RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10614
(70 letters)
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 107 bits (270), Expect = 2e-29
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+D +SYR PLGV AGITPFNFPAMIPLWMFP+AIACGNT V+KPS
Sbjct: 128 IDTYSYRQPLGVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPS 172
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 94.6 bits (235), Expect = 7e-25
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+D++S R PLGV AGITPFNFPAMIPLWMFP+AIACGNT V+KPS
Sbjct: 128 VDVYSIRQPLGVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPS 172
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 77.9 bits (191), Expect = 9e-19
Identities = 33/45 (73%), Positives = 38/45 (84%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+D +S R PLGV AGI PFNFPAMIPLWMFPVA+ CGNT ++KPS
Sbjct: 241 VDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPS 285
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 71.8 bits (177), Expect = 1e-16
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ R PLGV ITP+NFP ++ W A+A GNT V+KPS
Sbjct: 122 TRREPLGVVGAITPWNFPLLLAAWKIAPALAAGNTVVLKPS 162
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 69.2 bits (170), Expect = 9e-16
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV ITP+NFP ++ W A+A GNT V+KPS
Sbjct: 88 ELAIVRREPLGVVGAITPWNFPLLLAAWKLAPALAAGNTVVLKPS 132
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 68.5 bits (168), Expect = 1e-15
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV ITP+NFP + W A+A GNT V+KPS
Sbjct: 125 SKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPS 169
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 67.3 bits (165), Expect = 3e-15
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ + R PLGV ITP+NFP ++ W A+A GNT V+KPS
Sbjct: 84 GEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAGNTVVLKPS 128
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 66.2 bits (162), Expect = 8e-15
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 2 DIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
D + R P+GV A ITP+NFP IP W A+ CGNT V KP+
Sbjct: 128 DAMTRRQPIGVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPA 171
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 63.8 bits (156), Expect = 6e-14
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+++ + R PLGV ITP+NFP IP W A+A GNT V KP+
Sbjct: 127 VEVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPA 171
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 63.4 bits (155), Expect = 8e-14
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
PLGV IT FNFP +P W +A+ CGNT V KPS
Sbjct: 131 WNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPS 169
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 62.8 bits (153), Expect = 1e-13
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVF 47
R P+GV AGI P+NF MI +W A+A G T VIKPS F
Sbjct: 140 REPVGVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEF 180
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 62.2 bits (152), Expect = 3e-13
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVF 47
R PLGV A I P+NFP ++ W A+ GNT V+KPS F
Sbjct: 112 RKPLGVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPF 152
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 57.2 bits (139), Expect = 2e-11
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
RVPLGV I+PFNFP ++ + A+A GN V+KP
Sbjct: 93 MVRRVPLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPD 134
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 55.3 bits (134), Expect = 5e-11
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 6 YRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPS 45
++VP+GV AGI P+NFP +I + P A+ GNT VIKPS
Sbjct: 130 FKVPIGVVAGILPWNFPFFLIARKLAP-ALVTGNTIVIKPS 169
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 55.0 bits (133), Expect = 8e-11
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
S R PLGV AGITPFN+P ++ A+A GNT V+KPS
Sbjct: 115 SVRRPLGVVAGITPFNYPLILATKKVAFALAAGNTVVLKPS 155
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 54.6 bits (132), Expect = 1e-10
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV A I P+N+P M+ W A+A GNT V+KPS
Sbjct: 116 REPIGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPS 154
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 54.1 bits (131), Expect = 2e-10
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
D ++ R PLGV A ITP+N P ++ A+A GNT V+KPS
Sbjct: 110 DYLNFTRREPLGVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPS 155
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 53.5 bits (129), Expect = 3e-10
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV ITPFNFPA + AIA GN+ V+KPS
Sbjct: 121 REPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPS 159
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 52.6 bits (127), Expect = 5e-10
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 8 VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQSSFVTSTKYFKV 60
+PLGV I+P+NFP I M AI GNT ++KP+ + V + K+ +V
Sbjct: 170 IPLGVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPA--SDTPVIAAKFVEV 220
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 52.7 bits (127), Expect = 6e-10
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVF 47
R PLGV AGI +N+P I W A+ACGN V KPS F
Sbjct: 114 REPLGVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPF 154
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 52.4 bits (126), Expect = 6e-10
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV I P+NFP M W A+A GNT V+KP+
Sbjct: 115 REPVGVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPA 153
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 52.1 bits (125), Expect = 8e-10
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV GI +N+P I W A+A GN V KPS
Sbjct: 131 REPLGVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPS 169
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 52.0 bits (125), Expect = 9e-10
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQS 49
R P+GV ITP+NFP +I P A+A G T V+KPS F S
Sbjct: 117 REPIGVVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTS 159
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 51.8 bits (125), Expect = 1e-09
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV A I P+N+P M+ W A+A GNT V+KPS
Sbjct: 136 RDPVGVVASIAPWNYPLMMAAWKLAPALAAGNTVVLKPS 174
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 51.4 bits (124), Expect = 1e-09
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV + P+NFP ++ W A+A GN+ V+KP+
Sbjct: 122 REPLGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPA 160
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 51.4 bits (124), Expect = 2e-09
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV A ITPFNFP + AIA GN V+KP+
Sbjct: 120 IREPIGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLKPA 159
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 50.7 bits (122), Expect = 3e-09
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
PLGV A I+P+NFP I M A+ GNT V+KP+
Sbjct: 161 RYVYRPLGVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPA 202
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 50.7 bits (122), Expect = 3e-09
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV I P+NFP ++ W A+A GNT V+KP+
Sbjct: 139 REPIGVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPA 177
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 50.6 bits (122), Expect = 3e-09
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV ITP+N P M+ W A+A GNT V+KPS
Sbjct: 115 RQPVGVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPS 153
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 50.3 bits (121), Expect = 4e-09
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV A ITP+NFP + L A+A GNT V+KP+
Sbjct: 121 REPVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPA 159
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 50.3 bits (121), Expect = 4e-09
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV AGI +N+P I W A+A GN + KPS
Sbjct: 140 REPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPS 178
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 49.6 bits (119), Expect = 7e-09
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2 DIHSYRV--PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ S V P+GV ITP+N+P + W A+A GNT VIKPS
Sbjct: 125 HVISRTVREPVGVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPS 170
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 49.3 bits (118), Expect = 8e-09
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV I+P+N P ++ W A+ACGNT V+KPS
Sbjct: 137 RKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPS 175
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 49.0 bits (117), Expect = 1e-08
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 2 DIHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSVF 47
+I ++ LGVT GI P+NFP +I M P A+ GNT VIKPS F
Sbjct: 64 NILLFKRALGVTTGILPWNFPFFLIARKMAP-ALLTGNTIVIKPSEF 109
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 48.9 bits (117), Expect = 1e-08
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P GV I P+N+P + W A+A GNT VIKP+
Sbjct: 142 HEPYGVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPA 180
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 49.0 bits (118), Expect = 1e-08
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 3 IHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPS 45
I + P+GV A ITP+NFP AMI + P A+A G T V+KP+
Sbjct: 111 ILVIKQPVGVVAAITPWNFPAAMITRKIAP-ALAAGCTVVLKPA 153
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 48.5 bits (116), Expect = 2e-08
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
YR PLGV I+P+NFP + + A+A GN V+KP+
Sbjct: 127 YREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVLKPA 166
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 48.4 bits (116), Expect = 2e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P GV I+P+N+P + P+ A+A GN V+KPS
Sbjct: 116 EYRPYGVVGVISPWNYPLLTPMGDIIPALAAGNAVVLKPS 155
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 48.0 bits (115), Expect = 2e-08
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV A I P+N P + A+A G T V+KPS
Sbjct: 135 REPVGVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPS 173
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 48.1 bits (115), Expect = 2e-08
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 9 PLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPS 45
P+GV ITP+NFP AMI + P A+A G T V+KPS
Sbjct: 160 PVGVVGAITPWNFPLAMITRKVGP-ALAAGCTVVVKPS 196
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 47.8 bits (114), Expect = 3e-08
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV I P+NFP ++ W A+A GNT VIKPS
Sbjct: 134 REPIGVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPS 172
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 48.0 bits (114), Expect = 3e-08
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV A I P+NFP ++ W A+A GN+ ++KPS
Sbjct: 155 REPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPS 193
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 47.8 bits (114), Expect = 3e-08
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQS 49
P+GV I P+NFP ++ W A+A GNT V+KP+ +
Sbjct: 147 PVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTP 187
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 47.7 bits (113), Expect = 3e-08
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV A I P+N+P M+ W A+A GN V+KPS
Sbjct: 135 RDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPS 173
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 47.3 bits (113), Expect = 4e-08
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
PLGV I P+NFP ++ W A+A GNT V+KP+
Sbjct: 136 PLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPA 172
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 46.6 bits (111), Expect = 8e-08
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P+GV I P+NFP ++ W A+ACGNT V+KP+
Sbjct: 145 PVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPA 181
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 46.1 bits (110), Expect = 1e-07
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
RVPLGV I+PFNFP ++ + A+A GN V+KP
Sbjct: 108 RVPLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKP 145
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 46.0 bits (109), Expect = 1e-07
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVF 47
++ RVP+G ITP+N P M+ W A+A GNT V+KP+ +
Sbjct: 130 YTVRVPVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEW 173
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 45.8 bits (109), Expect = 1e-07
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 2 DIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV ITP+NFP ++ W A+A G T V+KPS
Sbjct: 113 KARVRREPVGVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPS 156
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 45.2 bits (107), Expect = 3e-07
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVF 47
P+GV I P+NFP ++ W A+A GNT V+KPS
Sbjct: 144 PIGVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSEL 182
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 45.0 bits (107), Expect = 3e-07
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIK 43
+ R PLGV I P+N P M+ A+ GNT V+K
Sbjct: 113 TVREPLGVVGAILPWNAPLMLAALKIAPALVAGNTVVLK 151
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 44.9 bits (107), Expect = 3e-07
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ R P GVT I P+N+P I A+A GN V+KP+
Sbjct: 113 TVREPHGVTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPA 153
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 44.9 bits (107), Expect = 3e-07
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
PLGV IT FNFP + W +A+ CGN V KPS
Sbjct: 132 PLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPS 168
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 44.8 bits (106), Expect = 3e-07
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
PLGV I P+NFP ++ W A+A GN V+KP+
Sbjct: 136 PLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPA 172
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 44.8 bits (106), Expect = 4e-07
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQSSFVTSTKY 57
R P+GV + P+N+P M+ W +A GNT V+KP+ Q + +T+ K+
Sbjct: 145 REPIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPA--QVTPLTALKF 193
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 44.4 bits (105), Expect = 4e-07
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P+GV I P+NFP ++ W A+ACGNT V+KP+
Sbjct: 141 PIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPA 177
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 44.3 bits (105), Expect = 5e-07
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV ITPFNFP + AIA G V+KP+
Sbjct: 121 REPVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPA 159
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 44.5 bits (105), Expect = 5e-07
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 9 PLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPS 45
P+GVTA ITP+NFP AMI P A+A G T V+KP+
Sbjct: 146 PIGVTAAITPWNFPAAMITRKAGP-ALAAGCTMVLKPA 182
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 44.0 bits (105), Expect = 6e-07
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 6 YRVPLGVTAGITPFNFP---AMIPLWMFPV-AIACGNTHVIKPS 45
Y P GV I P+N+P A+ PL + AIA GNT V+KPS
Sbjct: 97 YYEPYGVVLIIAPWNYPFQLALAPL----IGAIAAGNTAVLKPS 136
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 44.1 bits (105), Expect = 6e-07
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ PLGV I P+N+P ++ L AIA G T V+KPS
Sbjct: 106 KEPLGVVLIIGPWNYPVLLALSPLVGAIAAGCTVVLKPS 144
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 43.9 bits (104), Expect = 7e-07
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 3 IHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
I + R PLGV ITPFN P AIA N V+KPS
Sbjct: 114 IFTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVLKPS 156
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 43.4 bits (102), Expect = 1e-06
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
H YR P G I FNFP IPL A+A GN ++KP
Sbjct: 92 QQSHGYRWPYGPVLVIGAFNFPLWIPLLQLAGALAMGNPVIVKP 135
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 43.2 bits (102), Expect = 1e-06
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R +GV ITP+NFP I L A+A GNT V+KP+
Sbjct: 139 REAVGVVGAITPWNFPHQINLAKLGPALAAGNTVVLKPA 177
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 43.0 bits (101), Expect = 1e-06
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQSSFVTSTKYFKVVMSH 64
S+ V LG I+P+NFP I M +A GNT + KP+ + + V K F++
Sbjct: 150 SFYVGLGAGVVISPWNFPVAIFTGMIVAPVAVGNTVIAKPA--EDAVVVGYKVFEIFHEA 207
Query: 65 --PPNI 68
PP +
Sbjct: 208 GFPPGV 213
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 42.9 bits (102), Expect = 1e-06
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 7 RVPLGVTAGITPFNFPA-MIPLWMFPVAIACGNTHVIKPS 45
R P+GV ITP+N+P I L + P A+A G T V+KPS
Sbjct: 128 REPIGVCGLITPWNWPLNQIVLKVAP-ALAAGCTVVLKPS 166
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 42.8 bits (101), Expect = 2e-06
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 2 DIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ + PLGV ITP+N+P ++ W A+A G T V+KPS
Sbjct: 144 KGYVLKEPLGVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPS 187
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 42.6 bits (101), Expect = 2e-06
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPS 45
R P+G + ITPFNFP + L V AIA G V+KP+
Sbjct: 121 RFPIGPVSAITPFNFP--LNLVAHKVAPAIAAGCPFVLKPA 159
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 42.5 bits (100), Expect = 2e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIK 43
P+GV I P+NFP ++ W A+ACGNT V+K
Sbjct: 195 PIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLK 229
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 42.6 bits (101), Expect = 2e-06
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ P+GV GI P+N P ++ +A GNT V+K S
Sbjct: 95 VKEPVGVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKAS 134
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 42.1 bits (100), Expect = 3e-06
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 8/41 (19%)
Query: 9 PLGVTAGITPFNFP---AMIPLWMFPV-AIACGNTHVIKPS 45
PLGV I P+N+P A+ PL + AIA GNT V+KPS
Sbjct: 100 PLGVVLIIGPWNYPLQLALAPL----IGAIAAGNTVVLKPS 136
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 41.6 bits (98), Expect = 4e-06
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 7 RVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPSVFQSSFV 52
+ P+GV A ITP+NFP AMI A+A G T V+KP+ Q+
Sbjct: 115 KQPVGVCAAITPWNFPAAMITRKAGA-ALAAGCTVVVKPA-EQTPLS 159
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 41.2 bits (97), Expect = 7e-06
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSV 46
PLGV I +N+P + L AIA GNT V+KPS
Sbjct: 109 PLGVVLVIGAWNYPLNLTLIPLAGAIAAGNTVVLKPSE 146
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 41.0 bits (97), Expect = 7e-06
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 6 YRVPLGVTAGITPFNFP------AMIPLWMFPVAIACGNTHVIKPSVF 47
R PLGV I PFN+P +IP A+ GNT V KP+
Sbjct: 138 RREPLGVVLAIGPFNYPLNLTVSKLIP------ALIMGNTVVFKPATQ 179
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 39.8 bits (93), Expect = 2e-05
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 8 VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P GVT I+P+NFP I + M I GN V+KP+
Sbjct: 166 TPTGVTVVISPWNFPFAIMVGMTVAPIVTGNCVVLKPA 203
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 39.5 bits (93), Expect = 2e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV I P+N+P + + A+ GN ++K S
Sbjct: 114 REPLGVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHS 152
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 38.8 bits (91), Expect = 4e-05
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+R P GV A PFNFP +P A+ GNT V KPS
Sbjct: 94 RHR-PHGVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPS 133
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 38.6 bits (90), Expect = 5e-05
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIK 43
YR P G A ITPFNFP IP A+ GN ++K
Sbjct: 137 SGYRWPYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLK 176
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 38.1 bits (89), Expect = 9e-05
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQSSFVTST 55
R P+GV I P+N P ++ + A+A G T V+KP+ Q++ + +
Sbjct: 115 REPMGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAG-QTAQINAA 162
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 37.4 bits (87), Expect = 1e-04
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
+ R P GV A I FN P M +A GNT V+KP
Sbjct: 112 TLREPYGVVARIVAFNHPLMFAAAKIAAPLAAGNTVVVKP 151
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 37.5 bits (87), Expect = 1e-04
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
++ + P+GV I P+NFP+ + A+A G T V+KP+
Sbjct: 153 YTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPA 194
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 37.2 bits (87), Expect = 1e-04
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 2 DIHSYRVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPS 45
D++ Y+ PLGV I +N+P + L + P+ AIA GN VIKPS
Sbjct: 93 DVYIYKEPLGVVLIIGAWNYP--LQLTLVPLVGAIAAGNCVVIKPS 136
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 37.1 bits (86), Expect = 2e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIK 43
PLG+ IT FNFP + W +A+ CGN V K
Sbjct: 154 PLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWK 188
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 36.3 bits (85), Expect = 3e-04
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 9 PLGVTAGITPFNFP---AMIPLWMFPVAIACGNTHVIKPS 45
PLGV I P+N+P A+ PL A+A GN +IKPS
Sbjct: 101 PLGVVGIIVPWNYPLYLALGPL---IAALAAGNRVMIKPS 137
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 36.6 bits (85), Expect = 3e-04
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPS 45
PLGV I+ +NFP L + PV AIA GN V+KPS
Sbjct: 101 PLGVVLVISAWNFP--FLLSLEPVIGAIAAGNAVVLKPS 137
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 35.7 bits (83), Expect = 6e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P GV A P+NFP +P A+ GNT V KPS
Sbjct: 134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPS 170
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 35.7 bits (82), Expect = 6e-04
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
GV I+P+NFP I A+A GNT + KP+
Sbjct: 160 SRGVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPA 196
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 35.6 bits (83), Expect = 7e-04
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 19/51 (37%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAI---------ACGNTHVIKPSVFQSS 50
GV I+P W FP+AI A GNT + KP+ Q+
Sbjct: 167 GRGVFVCISP---------WNFPLAIFTGQIAAALAAGNTVIAKPA-EQTP 207
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 35.1 bits (81), Expect = 8e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
++PLGV I PFN+P + + A+ GN V+KP
Sbjct: 156 KIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNAVVLKP 193
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 34.9 bits (81), Expect = 0.001
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 6 YRVPLGVTAGITPFNFPA------MIPLWMFPVAIACGNTHVIKP 44
R P GV I+P+N+P IP A+ GN V+KP
Sbjct: 151 LRQPKGVVGVISPWNYPLTLAVSDAIP------ALLAGNAVVLKP 189
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 34.3 bits (79), Expect = 0.002
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P GV A P+NFP +P A+ GNT V KPS
Sbjct: 132 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPS 168
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 34.4 bits (80), Expect = 0.002
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 9 PLGVTAGITPFNFPAMIPLW-MFPVAIAC---GNTHVIK--PSVFQSS 50
PLGV GI P+NF P W +F A GNT ++K +V +
Sbjct: 96 PLGVVLGIMPWNF----PFWQVFRFAAPNLMAGNTVLLKHASNVPGCA 139
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 34.1 bits (79), Expect = 0.002
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 9 PLGVTAGITPFNFP---AMIPLWMFPVAIACGNTHVIKPS 45
P GV I+P+N+P A PL AIA GNT ++KPS
Sbjct: 100 PKGVCLIISPWNYPFNLAFGPL---VSAIAAGNTAILKPS 136
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 34.2 bits (79), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
PLG I+P+NFP I A+A GN+ + KP
Sbjct: 768 PLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKP 803
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 33.7 bits (78), Expect = 0.003
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 5 SYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
PLG I+P+NFP I A+ GNT + KP
Sbjct: 672 PGHKPLGPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKP 711
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 33.3 bits (76), Expect = 0.004
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 3 IHSYRVPL-GVTAGITPFNFPA-MIPLWMFPVAIACGNTHVIKPS 45
+ + R PL GV + ITPFN P + + P AIA N V+KPS
Sbjct: 132 VFTQREPLLGVISAITPFNHPMNQVAHKIAP-AIATNNRMVVKPS 175
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 33.2 bits (76), Expect = 0.004
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPSVFQ---SSFVTST 55
PLGV + +NFP I L + P+ AIA GN V+KPS S+F+ +
Sbjct: 108 PLGVVLIFSSWNFP--IGLSLEPLIGAIAAGNAVVLKPSELAPATSAFLAAN 157
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 32.8 bits (75), Expect = 0.006
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
PLG I+P+NFP I A+A GN+ + KP
Sbjct: 236 PLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKP 271
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 32.7 bits (75), Expect = 0.007
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
R P GV I+P+N+P + + A+ GN V+KP
Sbjct: 115 NRRPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKP 153
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 31.0 bits (70), Expect = 0.027
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMF-----PVAIACGNTHVIKPS 45
YR PLG I P+NF PLW P+ +A GN +++K +
Sbjct: 124 YR-PLGTILAIMPWNF----PLWQVMRGAVPILLA-GNGYLLKHA 162
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 30.8 bits (69), Expect = 0.037
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
PLGV I+ +N+P ++ + AI+ GN V+KPS
Sbjct: 112 PLGVVLVISAWNYPFLLSIDPVIGAISAGNAVVLKPS 148
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 30.3 bits (69), Expect = 0.041
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 9 PLGVTAGITPFNFP------AMIPLWMFPVAIACGNTHVIKPS 45
PLGV I +N+P +I A+ GN V+K S
Sbjct: 120 PLGVVGAIVSWNYPFHNLLGPIIA------ALFAGNAIVVKVS 156
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 29.4 bits (66), Expect = 0.093
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 8 VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
VP+GV AG+ P P ++ ++I N V P
Sbjct: 103 VPVGVVAGLIPSTNPTSTAIYKTLISIKARNAIVFSP 139
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 29.0 bits (66), Expect = 0.14
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 11 GVTAGITPFNFPAMIPLWMF--PV--AIACGNTHVIKP 44
GV I+P+NFP I F V A+A GNT + KP
Sbjct: 686 GVFVCISPWNFPLAI----FLGQVAAALAAGNTVIAKP 719
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 27.6 bits (62), Expect = 0.38
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 15/47 (31%)
Query: 6 YRVPL-GVTAGITPFNFPAM------IPLWMFPVAIACGNTHVIKPS 45
YR PL G ++PFNF A+ P M GN + KPS
Sbjct: 167 YR-PLEGFVYAVSPFNFTAIGGNLAGAPALM-------GNVVLWKPS 205
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 27.6 bits (61), Expect = 0.44
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 8 VPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P+GVT I P P IA N + +P
Sbjct: 99 FPIGVTMHILPSTNPLSGITSAL-RGIATRNQCIFRPH 135
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 27.0 bits (60), Expect = 0.80
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV I+ FN P + + AIA G ++KP+
Sbjct: 122 REPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPA 160
>gnl|CDD|180353 PRK06026, PRK06026, 5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Validated.
Length = 212
Score = 26.5 bits (59), Expect = 0.81
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 5 SYR----VPLGVTAGITPF-NFPAMIPL 27
SYR PLG G+TPF + PA + L
Sbjct: 87 SYRDMDASPLGFEKGVTPFLDLPATVEL 114
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 26.7 bits (59), Expect = 0.94
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 13/46 (28%)
Query: 6 YRVPLGVTAGITPFNFPAM------IPLWMFPVAIACGNTHVIKPS 45
YR G I+PFNF A+ P M GNT + KPS
Sbjct: 166 YRPLEGFVYAISPFNFTAIAGNLAGAPALM-------GNTVIWKPS 204
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 26.6 bits (59), Expect = 0.97
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 9 PLGVTAGITPFNFPAMIPLWM---FPV-AIACGNTHVIK 43
PLGV + P+NF PLW F A+ GN ++K
Sbjct: 123 PLGVVLAVMPWNF----PLWQVVRFAAPALMAGNVGLLK 157
>gnl|CDD|236720 PRK10577, PRK10577, iron-hydroxamate transporter permease subunit;
Provisional.
Length = 668
Score = 26.0 bits (58), Expect = 1.6
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 10 LGVTAG------ITPFNFPAMIPLWMFPVAIA 35
LG+++G + F P W+ A+
Sbjct: 432 LGISSGAGLGVVLALFLVPGAGFGWLLAAALL 463
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 26.0 bits (57), Expect = 1.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 21 FPAMIPLWMFPVAIACGNTHVIKPSVFQSSFVTSTKYFKVVMSHPP 66
P MI +FP +AC + + K S + Y K+V+ P
Sbjct: 298 IPGMISRILFPDQVACADPEICKEICGNPSGCSDIAYPKLVIELLP 343
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 25.6 bits (57), Expect = 2.2
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 14/51 (27%)
Query: 1 MDIHSYRVPLGVTAGITPFNFP-AMIPLWMFPV-------AIACGNTHVIK 43
D+ VPLG A NFP A F V A+A G V+K
Sbjct: 97 PDLRRMLVPLGPVAVFGASNFPLA------FSVAGGDTASALAAGCPVVVK 141
>gnl|CDD|179207 PRK01024, PRK01024, Na(+)-translocating NADH-quinone reductase
subunit B; Provisional.
Length = 503
Score = 25.5 bits (56), Expect = 2.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 10 LGVTAGITPFNFPAMIPLWMFPVAIACG 37
L VT + P P IP WM + IA G
Sbjct: 151 LLVTGILYPLILPPTIPYWMAALGIAFG 178
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 25.3 bits (56), Expect = 2.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 8 VPL-GVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPSVFQSSFVT 53
P GV I FNFP L F A+ G ++KP+ ++++T
Sbjct: 142 TPRRGVAVHINAFNFPVWGMLEKFAPALLAGVPVIVKPAT-ATAYLT 187
>gnl|CDD|153389 cd07952, ED_3B_like, Uncharacterized class III extradiol
dioxygenases. This subfamily is composed of proteins of
unknown function with similarity to the catalytic B
subunit of class III extradiol dioxygenases. Class III
extradiol dioxygenases use a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. They play key roles in
the degradation of aromatic compounds.
Length = 256
Score = 25.0 bits (55), Expect = 3.6
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 3 IHSYRVPLGVTAG---ITPFNFPAMIPLWMFP 31
I + ++G P ++ +IPL
Sbjct: 95 IPVLGINFATSSGDNSDFPLDWGELIPLSFLK 126
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 24.9 bits (54), Expect = 4.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 9 PLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKP 44
P+GV A ITP P ++ +++ N+ + P
Sbjct: 95 PIGVVASITPSTNPTSTVIFKSLISLKTRNSIIFSP 130
>gnl|CDD|188082 TIGR00766, TIGR00766, inner membrane protein YhjD. This family,
including YhjD in E. coli, is a conserved inner
membrane protein homologous YihY, which in turn was
incorrectly assigned to be ribonuclease BN. This, any
suggestion this family is similar to ribonucleases
should be removed [Transcription, Degradation of RNA].
Length = 263
Score = 24.5 bits (53), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 14 AGITPFNFPAMIPLWMFPVAIA 35
A IT F+F ++IP+ M A+
Sbjct: 20 AAITYFSFLSIIPILMVSFAVF 41
>gnl|CDD|217374 pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of
bacterial proteins includes a sodium-translocating
NADH-ubiquinone oxidoreductase (i.e. a respiration
linked sodium pump). In Vibrio cholerae, it negatively
regulates the expression of virulence factors through
inhibiting (by an unknown mechanism) the transcription
of the transcriptional activator ToxT. The family also
includes proteins involved in nitrogen fixation, RnfD
and RnfE. The similarity of these proteins to
NADH-ubiquinone oxidoreductases was previously noted.
Length = 319
Score = 24.3 bits (54), Expect = 5.2
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 12 VTAGITPFNFPAMIPLWMFPVAIACG 37
VT + P P WM +
Sbjct: 77 VTGLLLALILPPTAPWWMVAIGTVFA 102
>gnl|CDD|235425 PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase
subunit B; Provisional.
Length = 405
Score = 24.4 bits (54), Expect = 5.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 12 VTAGITPFNFPAMIPLWMFPVAIACG 37
VT+ + P IPLW + I+ G
Sbjct: 152 VTSILFALILPPTIPLWQVALGISFG 177
>gnl|CDD|130992 TIGR01937, nqrB, NADH:ubiquinone oxidoreductase,
Na(+)-translocating, B subunit. This model represents
the NqrB subunit of the six-protein, Na(+)-pumping
NADH-quinone reductase of a number of marine and
pathogenic Gram-negative bacteria. This oxidoreductase
complex functions primarily as a sodium ion pump
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 413
Score = 24.0 bits (52), Expect = 7.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 12 VTAGITPFNFPAMIPLWMFPVAIACG 37
VT + P P IPLWM + IA G
Sbjct: 153 VTGILFPLIVPPTIPLWMAALGIAFG 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.137 0.443
Gapped
Lambda K H
0.267 0.0859 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,541,070
Number of extensions: 250100
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 124
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)