RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10614
(70 letters)
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 109 bits (274), Expect = 3e-30
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
++ +YR P+GV GI PFNFP M+P WMFP+AIA GNT ++KPS
Sbjct: 133 VEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPS 177
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 108 bits (273), Expect = 3e-30
Identities = 29/45 (64%), Positives = 37/45 (82%)
Query: 1 MDIHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+D++S R P+G+ AGITPFNFP MIP+WMF AIACGN ++KPS
Sbjct: 154 IDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPS 198
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 64.5 bits (158), Expect = 2e-14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 3 IHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
YRV GV I+P+NFP + + A+A GN VIKP+
Sbjct: 142 NRVYRVAKGVVGVISPWNFPLNLSIRSVAPALAVGNAVVIKPA 184
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 63.7 bits (156), Expect = 4e-14
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P+G+ IT FNFP + W +A+ CGN + K +
Sbjct: 155 WNPVGLVGIITAFNFPVAVYGWNNAIAMICGNVCLWKGA 193
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 63.8 bits (156), Expect = 4e-14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ P+GVT I+P+NF I + I GNT V+KP+
Sbjct: 167 RYFYTPMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPA 208
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 63.9 bits (156), Expect = 4e-14
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
H + P GV A I P+NFP I + M AI GN V KPS
Sbjct: 661 HYFYEPKGVAAVIAPWNFPLAISMGMASAAIVTGNCVVFKPS 702
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 63.9 bits (156), Expect = 4e-14
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
H GV I FNFP+ A+ G ++KP+
Sbjct: 146 HVLSPTRGVALFINAFNFPSWGLWEKAAPALLSGVPVIVKPA 187
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 62.6 bits (153), Expect = 1e-13
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 7 RVPLGVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPS 45
P GV A P+NFP +P + P A+ GN V KPS
Sbjct: 137 HKPHGVVAVFGPYNFPGHLPNGHIVP-ALLAGNCVVFKPS 175
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 62.6 bits (153), Expect = 1e-13
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
S+ VPLG I P+NFP I M +A GNT + KP+
Sbjct: 168 ESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPA 209
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 60.3 bits (147), Expect = 7e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 3 IHSYRVPLGVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPS 45
R PLGV I+PFN+P + + P A+ GNT V KP+
Sbjct: 146 ALVEREPLGVVLAISPFNYPVNLAAAKIAP-ALVTGNTVVFKPA 188
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 60.3 bits (147), Expect = 8e-13
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R PLGV A ITPFN+P + + GN V+KPS
Sbjct: 155 REPLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPS 193
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 59.9 bits (146), Expect = 8e-13
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 3 IHSYRVPLGVTAGITPFNFPAMIPLW-MFPVAIACGNTHVIKPS 45
R P+G+ I+PFN+P + + P A+ GN KP
Sbjct: 137 AVVRREPVGLVLAISPFNYPVNLAGSKIAP-ALIAGNVIAFKPP 179
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 59.1 bits (144), Expect = 2e-12
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 IHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPS 45
YR+PLGV + I+PFNFP + + P AIA GN+ V KP
Sbjct: 137 NKIYRLPLGVISSISPFNFPMNLSMRSIAP-AIALGNSVVHKPD 179
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 58.7 bits (143), Expect = 3e-12
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+Y R PLGV AGI +N+P MI W A+ACGN V KPS
Sbjct: 146 GAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNAVVFKPS 191
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 58.3 bits (142), Expect = 4e-12
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
Y R PLGV AGI +N+P I LW A+A GN + KPS
Sbjct: 133 TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPS 178
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 57.6 bits (140), Expect = 7e-12
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
D R P+GV ITP+NFP +I P AI G T V+KPS
Sbjct: 152 DRLGLVLREPVGVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPS 197
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 57.2 bits (139), Expect = 7e-12
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 3 IHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
I + R P+G+ ITPFNFP + P AIA GN V PS
Sbjct: 124 IFTRREPVGIVGAITPFNFPLNLSAHKIAP------AIATGNVIVHHPS 166
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 57.2 bits (139), Expect = 8e-12
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 4 HSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+Y RVPLGV GI +N+P I W A+ GN V KPS
Sbjct: 143 FAYTKRVPLGVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPS 186
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 57.1 bits (138), Expect = 9e-12
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 4 HSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
GV I+P+NFP I L A+ GN+ V KP+
Sbjct: 644 ALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPA 685
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 57.2 bits (139), Expect = 1e-11
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
S R PLGV A I P+N+P M+ W A+A GN V+KPS
Sbjct: 150 GHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPS 195
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 56.4 bits (137), Expect = 2e-11
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
S+ R P+GV ITP+N+P ++ W A+A G ++KPS
Sbjct: 142 TFKSHVLREPIGVVGLITPWNYPMLMATWKVAPALAAGCAAILKPS 187
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 56.0 bits (136), Expect = 2e-11
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
D S + P+GV ITP+N+P + W A+A G + V+KPS
Sbjct: 161 DTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMKPS 206
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 56.0 bits (136), Expect = 2e-11
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
S R P+G+ I P+N+P M+ W AI GNT V KPS
Sbjct: 152 GHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPAIGGGNTVVFKPS 197
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 56.0 bits (136), Expect = 2e-11
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ + P+GV + P+N+P M+ W +A GNT VIKP+
Sbjct: 169 RNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPA 214
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 55.8 bits (135), Expect = 3e-11
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
P+G+ GI P P ++ +++ N + P
Sbjct: 100 IAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPH 139
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 55.8 bits (135), Expect = 3e-11
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 3 IHSYRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ VPLGV AG+ P P ++ ++I GN+ V P
Sbjct: 102 VMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPH 144
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 55.6 bits (135), Expect = 3e-11
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
D Y RVP G ITP+N P M+ W A+A GNT V+KP+
Sbjct: 153 DWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPALAFGNTVVLKPA 198
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 55.6 bits (135), Expect = 3e-11
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ +Y P+GV I P+NFP ++ LW A++CGNT V+KP+
Sbjct: 150 NFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPA 195
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 55.2 bits (134), Expect = 5e-11
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 DIHSY--RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
D SY P+GV I P+NFP ++ W A+A GN V+K +
Sbjct: 149 DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 194
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 52.9 bits (128), Expect = 2e-10
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 3 IHSYRVPLGVTAGITPFNFP-AMIPLWMFPVAIACGNTHVIKPS 45
I ++ LGVT GI P+NFP +I M P A+ GNT VIKPS
Sbjct: 136 ILLFKRALGVTTGILPWNFPFFLIARKMAP-ALLTGNTIVIKPS 178
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 53.1 bits (128), Expect = 3e-10
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 2 DIHSYRVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPS 45
DI ++ LG A NFP A+A G ++K
Sbjct: 129 DIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGH 174
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 52.5 bits (127), Expect = 4e-10
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
R P+GV I +N P + + A+ G T V+KP+
Sbjct: 144 REPVGVVGAIVAWNVPLFLAVNKIAPALLAGCTIVLKPA 182
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 51.4 bits (124), Expect = 1e-09
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+ +GV+ ITP+NFP A A G+ V+KPS
Sbjct: 137 KEAIGVSGLITPWNFPTNQTSLKLAAAFAAGSPVVLKPS 175
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 50.6 bits (122), Expect = 2e-09
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 7 RVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
+GV ITP+N+P A+ G T V+KPS
Sbjct: 159 YDAIGVVGLITPWNWPMNQVTLKVIPALLAGCTMVLKPS 197
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 50.8 bits (122), Expect = 2e-09
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 2 DIHSYRVPLGVTAGITPFNFPAMIPL--WMFPVAIACGNTHVIKPS 45
+I + P+G A NFP A+A G V+K
Sbjct: 162 EIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVVKGH 207
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 49.9 bits (120), Expect = 3e-09
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 3 IHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
I+ ++VP GV GIT +NFP A+ P A+ GNT V+KP+
Sbjct: 142 IYIHKVPRGVVVGITAWNFPLALAGRKIGP------ALITGNTMVLKPT 184
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 48.7 bits (117), Expect = 7e-09
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 12/49 (24%)
Query: 3 IHSYRVPLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
+ P+GV A ITP+NFP AMI A+A G T V+KP+
Sbjct: 140 ALVLKQPIGVAAVITPWNFPSAMITRKVGA------ALAAGCTVVVKPA 182
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 48.3 bits (116), Expect = 1e-08
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 12/43 (27%)
Query: 9 PLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
P+GVTA ITP+NFP AMI P A+A G T V+KP+
Sbjct: 145 PIGVTAAITPWNFPAAMITRKAGP------ALAAGCTMVLKPA 181
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 48.0 bits (115), Expect = 2e-08
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 12/43 (27%)
Query: 9 PLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
P+GVTA ITP+NFP AMI P A+A G T +++P+
Sbjct: 168 PVGVTAAITPWNFPAAMITRKAAP------ALAAGCTMIVRPA 204
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 47.9 bits (115), Expect = 2e-08
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 12/43 (27%)
Query: 9 PLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
P+GV A ITP+NFP AMI P A+A G V+KP+
Sbjct: 148 PIGVCAAITPWNFPAAMIARKVGP------ALAAGCPIVVKPA 184
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 47.6 bits (114), Expect = 2e-08
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 9 PLGVTAGITPFNFP-AMI-----PLWMFPVAIACGNTHVIKPS 45
P+GVT I P+NFP MI A+A G VIKP+
Sbjct: 147 PVGVTGLIVPWNFPIGMIAKKLSA------ALAAGCPSVIKPA 183
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 45.3 bits (108), Expect = 1e-07
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPVAIACGNTHVIKPS 45
YR G A I+PFNF A I + GN + KPS
Sbjct: 197 YRGLEGFVAAISPFNFTA-IGGNLAGAPALMGNVVLWKPS 235
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 45.2 bits (108), Expect = 1e-07
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 9 PLGVTAGITPFNFPAMIPLWMF-----PVAIACGNTHVIKPS--VFQS 49
PLGV I P+NF PLW P + GN++++K + V
Sbjct: 126 PLGVILAIMPWNF----PLWQVLRGAVP-ILLAGNSYLLKHAPNVTGC 168
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 44.8 bits (107), Expect = 2e-07
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 9 PLGVTAGITPFNFPAMIPLWMF-----PVAIACGNTHVIKPS--VFQS 49
GV P+NF PL+ P GN ++K + V S
Sbjct: 123 STGVIMACEPWNF----PLYQVIRVFAP-NFIVGNPILLKHAHNVPGS 165
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 44.5 bits (106), Expect = 3e-07
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPS 45
+ PLGV I +N+P L + P+ AIA GN V+KPS
Sbjct: 117 HSEPLGVVLVIGTWNYPFN--LTIQPMVGAIAAGNAVVLKPS 156
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 43.5 bits (103), Expect = 6e-07
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 6 YRVPLGVTAGITPFNFPAMIPLWMFPV--AIACGNTHVIKPS 45
+ P GVT I PFN+P L + P+ AI GNT +IKPS
Sbjct: 127 VQEPYGVTYIIGPFNYPVN--LTLTPLIGAIIGGNTCIIKPS 166
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703}
Length = 282
Score = 25.7 bits (57), Expect = 1.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 30 FPVAIACGNTHV 41
+AIA G+T V
Sbjct: 250 MELAIAEGSTIV 261
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 25.7 bits (57), Expect = 1.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 10 LGVTAGITPFNFPAMIPLWMFPVAIACGNTHVI 42
LG+ G + P +I ++ACG +
Sbjct: 318 LGLGEGAEEKSIPTLISRLPAVSSVACGASVGY 350
Score = 23.8 bits (52), Expect = 4.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 10 LGVTAGITPFNFPAMIPLWMFPVAIACGNTH 40
LG+ + PA++ + V G H
Sbjct: 40 LGLGENVMERKKPALVSIPEDVVQAEAGGMH 70
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 25.6 bits (56), Expect = 1.2
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 18 PFNFPAMIPLWMFPVAIACGNTHVIK 43
++ M W A+A ++
Sbjct: 347 AYHSTLMAAGWS---ALALQRGDILH 369
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics,
PSI-biology, protei structure initiative; HET: MES;
1.47A {Escherichia coli} PDB: 1w8g_A*
Length = 245
Score = 25.6 bits (57), Expect = 1.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 30 FPVAIACGNTHV 41
AIA G+T V
Sbjct: 209 MEAAIAAGSTMV 220
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 25.2 bits (55), Expect = 1.9
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 19 FNFPAMIPLWMFPVAIACGNTHVIK 43
++ M+ LW ++A NT + +
Sbjct: 357 YHNSLMVQLWS---SLASRNTRLFE 378
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 24.0 bits (52), Expect = 4.7
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 19 FNFPAMIPLWMFPVAIACGNTHVIK 43
+N M LW +A +++
Sbjct: 349 YNPLQMALLWN---TLATREVNLLH 370
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
structural genomi research consortium, TIM barrel; HET:
PLP; 1.90A {Agrobacterium tumefaciens}
Length = 244
Score = 23.7 bits (52), Expect = 6.0
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 30 FPVAIACGNTHV 41
F A+ G T V
Sbjct: 201 FETAVEFGATSV 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.443
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,081,467
Number of extensions: 46736
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 54
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)