BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10617
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZXL|A Chain A, Engineering The Active Site Of A Gh43 Glycoside Hydrolase
           Generates A Biotechnologically Significant Enzyme That
           Displays Both Endo-Xylanase And Exo-Arabinofuranosidase
           Activity
 pdb|3ZXL|B Chain B, Engineering The Active Site Of A Gh43 Glycoside Hydrolase
           Generates A Biotechnologically Significant Enzyme That
           Displays Both Endo-Xylanase And Exo-Arabinofuranosidase
           Activity
          Length = 542

 Score = 32.7 bits (73), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 3   NNIVVRVHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKEDQTHVYR 62
            N  + V  L  +G+RQ R+   V     G  +   ++Y++  ++ I++    D  +V R
Sbjct: 159 GNPTINVAQLSPDGTRQVRVQQRVYAHPQGQTVAGARMYKIRGNYYILVTRPADAEYVLR 218

Query: 63  QCYGQHTG 70
              G   G
Sbjct: 219 STTGSPFG 226


>pdb|3ZXK|A Chain A, Engineering The Active Site Of A Gh43 Glycoside Hydrolase
           Generates A Biotechnologically Significant Enzyme That
           Displays Both Endo-Xylanase And Exo-Arabinofuranosidase
           Activity
 pdb|3ZXK|B Chain B, Engineering The Active Site Of A Gh43 Glycoside Hydrolase
           Generates A Biotechnologically Significant Enzyme That
           Displays Both Endo-Xylanase And Exo-Arabinofuranosidase
           Activity
          Length = 542

 Score = 31.6 bits (70), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 3   NNIVVRVHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKEDQTHVYR 62
            N  + V  L  +G+RQ R+   V     G  +   ++Y++  ++ I++    D  +V R
Sbjct: 159 GNPTINVAQLSPDGTRQVRVQQRVYAHPQGQTVEGARMYKIRGNYYILVTRPADAEYVLR 218

Query: 63  QCYGQHTG 70
              G   G
Sbjct: 219 STTGSPFG 226


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,512,762
Number of Sequences: 62578
Number of extensions: 349241
Number of successful extensions: 1118
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 6
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)