Query psy10617
Match_columns 279
No_of_seqs 203 out of 521
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2458|consensus 100.0 1.9E-57 4.2E-62 431.6 14.2 252 19-275 74-448 (528)
2 PF05686 Glyco_transf_90: Glyc 100.0 1E-48 2.3E-53 375.8 16.1 224 47-275 38-322 (395)
3 smart00672 CAP10 Putative lipo 100.0 1.4E-45 3.1E-50 335.6 14.6 188 87-276 1-254 (256)
4 PF13524 Glyco_trans_1_2: Glyc 96.3 0.011 2.4E-07 44.6 5.8 43 222-264 48-90 (92)
5 PRK10307 putative glycosyl tra 87.5 1.8 3.8E-05 41.3 7.0 51 221-271 358-408 (412)
6 COG4641 Uncharacterized protei 86.6 0.54 1.2E-05 45.3 2.9 35 219-253 310-344 (373)
7 cd03795 GT1_like_4 This family 78.8 3.7 8.1E-05 37.2 5.1 40 221-260 317-356 (357)
8 PRK15427 colanic acid biosynth 78.4 6.3 0.00014 38.0 6.8 50 221-270 355-405 (406)
9 TIGR02472 sucr_P_syn_N sucrose 78.0 5.3 0.00011 38.8 6.1 49 221-269 391-439 (439)
10 TIGR03087 stp1 sugar transfera 77.8 6.2 0.00013 37.4 6.4 50 219-268 345-394 (397)
11 TIGR03088 stp2 sugar transfera 77.3 8 0.00017 35.9 6.9 50 221-270 323-372 (374)
12 PRK15484 lipopolysaccharide 1, 76.5 8 0.00017 36.8 6.8 52 220-272 328-379 (380)
13 smart00557 IG_FLMN Filamin-typ 74.3 7.8 0.00017 29.4 5.0 35 20-55 44-78 (93)
14 cd04962 GT1_like_5 This family 72.1 13 0.00028 34.1 6.8 48 222-269 322-369 (371)
15 cd03807 GT1_WbnK_like This fam 71.7 11 0.00024 33.5 6.1 47 221-267 317-363 (365)
16 cd03825 GT1_wcfI_like This fam 70.1 14 0.0003 33.5 6.5 48 221-268 315-362 (365)
17 PF00630 Filamin: Filamin/ABP2 67.3 16 0.00035 27.5 5.4 34 21-55 59-92 (101)
18 cd03801 GT1_YqgM_like This fam 66.6 14 0.0003 32.4 5.7 46 222-267 327-372 (374)
19 cd03799 GT1_amsK_like This is 65.7 12 0.00027 33.7 5.2 39 222-260 313-351 (355)
20 PRK05749 3-deoxy-D-manno-octul 65.4 12 0.00026 35.8 5.4 34 221-254 373-406 (425)
21 cd03794 GT1_wbuB_like This fam 63.9 13 0.00028 33.3 4.9 41 222-262 351-391 (394)
22 cd05844 GT1_like_7 Glycosyltra 63.0 15 0.00033 33.5 5.4 44 221-264 321-364 (367)
23 cd03808 GT1_cap1E_like This fa 61.8 19 0.00041 31.7 5.6 41 222-262 315-355 (359)
24 cd03822 GT1_ecORF704_like This 60.6 21 0.00046 32.0 5.8 45 221-266 319-363 (366)
25 TIGR02149 glgA_Coryne glycogen 58.5 33 0.00071 31.8 6.8 45 224-268 340-384 (388)
26 cd03813 GT1_like_3 This family 58.4 24 0.00051 34.7 6.1 46 221-266 427-472 (475)
27 cd03818 GT1_ExpC_like This fam 58.1 24 0.00052 33.3 5.9 40 221-260 351-390 (396)
28 cd04955 GT1_like_6 This family 56.8 25 0.00054 31.9 5.6 42 226-267 320-361 (363)
29 cd04946 GT1_AmsK_like This fam 52.8 26 0.00057 33.6 5.2 41 222-262 363-403 (407)
30 cd03800 GT1_Sucrose_synthase T 50.3 35 0.00076 31.4 5.6 42 222-263 354-395 (398)
31 cd03821 GT1_Bme6_like This fam 50.3 32 0.0007 30.5 5.2 42 220-261 329-370 (375)
32 cd03817 GT1_UGDG_like This fam 48.7 40 0.00088 29.9 5.5 31 225-255 332-362 (374)
33 cd03792 GT1_Trehalose_phosphor 45.8 63 0.0014 30.1 6.6 48 222-269 323-370 (372)
34 cd03819 GT1_WavL_like This fam 44.8 32 0.00069 31.1 4.3 39 221-259 315-354 (355)
35 cd03823 GT1_ExpE7_like This fa 44.3 54 0.0012 29.1 5.6 32 222-253 315-346 (359)
36 TIGR03449 mycothiol_MshA UDP-N 43.7 75 0.0016 29.8 6.8 48 221-269 353-400 (405)
37 cd03805 GT1_ALG2_like This fam 43.4 46 0.001 30.8 5.2 43 219-261 347-389 (392)
38 cd03820 GT1_amsD_like This fam 43.3 48 0.001 29.0 5.1 38 222-260 305-342 (348)
39 PLN02871 UDP-sulfoquinovose:DA 40.7 69 0.0015 31.2 6.1 34 221-254 385-418 (465)
40 PHA01630 putative group 1 glyc 38.8 82 0.0018 29.6 6.1 53 219-271 277-331 (331)
41 cd03798 GT1_wlbH_like This fam 38.8 77 0.0017 27.8 5.7 47 221-269 329-375 (377)
42 PLN02949 transferase, transfer 38.0 99 0.0022 30.6 6.8 49 222-271 408-457 (463)
43 PRK13609 diacylglycerol glucos 34.3 60 0.0013 30.4 4.5 48 220-268 322-369 (380)
44 cd03796 GT1_PIG-A_like This fa 33.9 1.5E+02 0.0032 28.0 7.1 52 220-271 317-368 (398)
45 TIGR02918 accessory Sec system 32.7 1.2E+02 0.0026 30.3 6.5 46 223-270 454-499 (500)
46 cd03809 GT1_mtfB_like This fam 32.4 75 0.0016 28.4 4.6 39 220-259 320-358 (365)
47 PF00017 SH2: SH2 domain; Int 32.4 68 0.0015 22.9 3.6 26 29-55 19-44 (77)
48 PF07520 SrfB: Virulence facto 31.7 52 0.0011 35.9 3.9 64 19-94 563-630 (1002)
49 PF00534 Glycos_transf_1: Glyc 31.6 60 0.0013 26.3 3.5 30 221-250 143-172 (172)
50 cd04951 GT1_WbdM_like This fam 30.6 1.3E+02 0.0029 26.9 6.0 47 221-268 311-358 (360)
51 cd03816 GT1_ALG1_like This fam 29.9 57 0.0012 31.3 3.6 36 222-257 367-405 (415)
52 KOG0518|consensus 29.6 54 0.0012 35.9 3.5 46 9-55 788-833 (1113)
53 cd03814 GT1_like_2 This family 27.6 1.5E+02 0.0033 26.2 5.8 39 222-261 318-356 (364)
54 PRK00726 murG undecaprenyldiph 25.8 78 0.0017 29.2 3.6 30 223-252 311-340 (357)
55 TIGR01133 murG undecaprenyldip 25.3 59 0.0013 29.7 2.7 32 222-253 307-338 (348)
56 cd03785 GT1_MurG MurG is an N- 24.8 59 0.0013 29.7 2.6 31 222-252 310-340 (350)
57 COG0715 TauA ABC-type nitrate/ 24.4 73 0.0016 29.2 3.1 27 223-249 240-266 (335)
58 cd04949 GT1_gtfA_like This fam 22.7 1.4E+02 0.003 27.5 4.7 33 222-254 331-363 (372)
59 PRK13608 diacylglycerol glucos 22.7 1.5E+02 0.0033 28.2 5.0 49 221-270 323-371 (391)
60 PF10787 YfmQ: Uncharacterised 22.6 17 0.00038 30.5 -1.3 65 3-70 43-118 (149)
61 smart00648 SWAP Suppressor-of- 22.1 1.4E+02 0.0031 20.2 3.5 35 238-272 6-53 (54)
62 PF09084 NMT1: NMT1/THI5 like; 22.0 67 0.0015 27.2 2.2 18 223-240 199-216 (216)
63 cd07353 harmonin_N N-terminal 21.7 1.9E+02 0.0041 21.5 4.1 33 241-273 2-34 (79)
64 TIGR02468 sucrsPsyn_pln sucros 20.7 3.2E+02 0.007 30.3 7.4 49 221-270 622-670 (1050)
65 PF01805 Surp: Surp module; I 20.2 1.4E+02 0.0031 20.3 3.2 35 238-272 7-55 (55)
No 1
>KOG2458|consensus
Probab=100.00 E-value=1.9e-57 Score=431.63 Aligned_cols=252 Identities=28% Similarity=0.518 Sum_probs=218.8
Q ss_pred ceeEEe-eeeecCCCceEEEeeecccccc-eEEEEEecC-----------------------------------------
Q psy10617 19 QCRIWT-NVLHTTDGVIIVRYKLYEVCYS-FNIVIISKE----------------------------------------- 55 (279)
Q Consensus 19 ~~~~~~-~~~~~~dg~~~~r~~~~~~~~~-~~~~v~~~~----------------------------------------- 55 (279)
..++.+ +.+|+.+|+++.+|+|+.+..+ +++++..++
T Consensus 74 ~t~~~~P~~~~~~~~s~~~~~~l~cs~~s~~~~~~~~p~~~~~~s~~~~~~~~~~~~~tCPDyfrWIheDL~Pw~etgIt 153 (528)
T KOG2458|consen 74 TTRIPVPKPLDRKDGSFLRRYRLYCSLFSGLKREVLCPSSHVSKSPYILKNPVYHESCTCPDYFRWIHEDLCPWRETGIT 153 (528)
T ss_pred cccccCCcccccccCCcchhhhhhhhhhhcccccccccccccccCccccCCCCCCCCCCCCcHHHHHHHhcCccccccch
Confidence 577777 8899999999999999987655 577776644
Q ss_pred -------------------C--cceeeeccCccchhhHHHHHHHHHHhhhhc--CCCCeEEEeccCCCCCccC-------
Q psy10617 56 -------------------D--QTHVYRQCYGQHTGFKMFMDNLLLSLTRKV--HLPDLEFWSNLGDWPLAKS------- 105 (279)
Q Consensus 56 -------------------~--~~~~Yr~~~~~~~~f~~~~d~~Ll~L~r~~--~lPDvEf~~n~~D~P~~~~------- 105 (279)
| +++.|++++|+++.||+| ++++|+|+| .|||+|++|||+|||.+.+
T Consensus 154 re~~erak~~a~fr~vI~~g~~yv~~Y~ks~qtrd~ft~w---gilqLlr~ypgklPDlElmf~~~D~P~v~~~~~~~~~ 230 (528)
T KOG2458|consen 154 REMAERAKRKAHFRLVIKEGRLYVENYRKSIQTRDVFTIW---GILQLLRTYPGKLPDLELMFNCGDWPLVRKKDFQGTP 230 (528)
T ss_pred HHHhhhhhcccceeeeeecCceehhhhhhhhcccchHHHH---HHHHHHHhcCCCCCCceeeeecCCccccchhhccCCC
Confidence 0 155589999999999999 888888886 8999999999999999976
Q ss_pred CCCCeeeeccCCCccceeccCCCcccc---cccccchhhhhhhhhcCCCCCCcccccCcEEeecCCCchhHHHHHHHHcc
Q psy10617 106 AQYPMFSWCGSNETFDIIMPTYDITES---SLENMGRVSLDMLSVQGNNHKKWEQKEPKVFWRGRDSNRDRLKLIDIARQ 182 (279)
Q Consensus 106 ~~~Pifs~cks~~~~DIl~Pd~~f~e~---~~~~~~~~~~d~~~~~~~~~~pW~~K~~kafWRG~~s~~~R~~Lv~~s~~ 182 (279)
+|+|+||||+++++.|||||||+||.+ ++++|...+.++ +|||++++|.+|.|+|||||+++..+|.+|..++.+
T Consensus 231 ~ppPlF~yCg~~~s~DIVfPdwsfwgw~e~nik~w~~~~~~~--~egn~~~~W~~r~~yAywrGnp~v~e~~rl~ll~cn 308 (528)
T KOG2458|consen 231 PPPPLFSYCGSSESLDIVFPDWSFWGWAEVNIKPWEKLLEDI--VEGNKRPKWKNKNPYAYWRGNPSVAERLRLDLLSCN 308 (528)
T ss_pred CCCCeEeecCCcccccccccCccccCChhhcccccchHHHHH--HhhccCCCcccCCceeEecCCCCccccchhhhhhcC
Confidence 689999999999999999999999865 567777766666 899999999999999999999999889999999999
Q ss_pred CCCCccceeccccccchhHhhhCC-------CC-----------------------------CCCccccccc--------
Q psy10617 183 HPDLFNASLTNFFFFKSEEEKYGP-------KT-----------------------------KHVSFFEFFD-------- 218 (279)
Q Consensus 183 ~p~l~da~~t~~~~~~~~~~~~g~-------~~-----------------------------~~~~y~d~f~-------- 218 (279)
+|++.|+++|.+..+..+|.++|- +| -.+.|+|||.
T Consensus 309 ~s~~~d~~~~~y~qdw~~E~~~G~k~s~l~dqc~hrYkIyiEG~awsvs~kYilacDS~tL~v~p~YydfF~r~l~P~~H 388 (528)
T KOG2458|consen 309 NSELVDANATLYFQDWSKESKLGFKQSNLFDQCKHRYKIYIEGTAWSVSEKYILACDSMTLKVKPEYYDFFYRGLQPWKH 388 (528)
T ss_pred CchhhchhhhhHHHhhhhhhhccccccchhhhcceeeEEEEeeeeeeeecceeeecceeEEeecchHHHHHhhcccchhc
Confidence 999999888876544455555551 11 1467999987
Q ss_pred ---CCCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhccC
Q psy10617 219 ---VKEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNFNFMGS 275 (279)
Q Consensus 219 ---V~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eYa~~s 275 (279)
|+++|+||.+||+|+++|+++||+||++|++|+++.|.|++|||||+|||+|||++-
T Consensus 389 YwPIk~~c~slkfaV~Wgn~h~~~Aq~Igk~gs~f~r~~L~m~~vYdYmfhllqeYakL~ 448 (528)
T KOG2458|consen 389 YWPIKSNCRSLKFAVDWGNNHDEEAQKIGKEGSEFARKNLKMDYVYDYMFHLLQEYAKLQ 448 (528)
T ss_pred ccccccchhHHHHHHHhcccChHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999763
No 2
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=100.00 E-value=1e-48 Score=375.80 Aligned_cols=224 Identities=34% Similarity=0.596 Sum_probs=184.4
Q ss_pred eEEEEEecCCcceeeeccCccchhhHHHHHHHHHHhhhhc--CCCCeEEEeccCCCCCccC--------CCCCeeeeccC
Q psy10617 47 FNIVIISKEDQTHVYRQCYGQHTGFKMFMDNLLLSLTRKV--HLPDLEFWSNLGDWPLAKS--------AQYPMFSWCGS 116 (279)
Q Consensus 47 ~~~~v~~~~~~~~~Yr~~~~~~~~f~~~~d~~Ll~L~r~~--~lPDvEf~~n~~D~P~~~~--------~~~Pifs~cks 116 (279)
+++.|+.+.-+.+.|++++|+|+.|++| +|++|+|++ +|||+||+||++|+|.+.+ +++||||||++
T Consensus 38 ~r~~I~~g~lYv~~~~~~~~tR~~~t~~---~l~~ll~~~p~~lPD~Ef~~n~~D~P~~~~~~~~~~~~~~~Pifs~~~~ 114 (395)
T PF05686_consen 38 FRYVIKDGRLYVESYREMFQTRDMFTLW---GLLQLLRRYPGRLPDVEFMFNCDDWPVVRKDDYQGPSAPPPPIFSYCKS 114 (395)
T ss_pred eEEEEECCEEEEEecccccchhHHHHHH---HHHHHHHhCcCCCCCeeEEeECCCCccccccccCCCCcchhhheeeccc
Confidence 3444443333355556667788888877 999999998 9999999999999999876 37999999999
Q ss_pred CCccceeccCCCcccc---cccccchhhhhhhhhcCCCCCCcccccCcEEeecCCCch-hHHHHHHHHccCCCCccceec
Q psy10617 117 NETFDIIMPTYDITES---SLENMGRVSLDMLSVQGNNHKKWEQKEPKVFWRGRDSNR-DRLKLIDIARQHPDLFNASLT 192 (279)
Q Consensus 117 ~~~~DIl~Pd~~f~e~---~~~~~~~~~~d~~~~~~~~~~pW~~K~~kafWRG~~s~~-~R~~Lv~~s~~~p~l~da~~t 192 (279)
+++.||+||||+||.. ++++|......+ .+++..+||++|+|+|||||+++.. .|++|++|++.+|+++||+++
T Consensus 115 ~~~~DIl~Pd~~fwgw~e~~i~~w~~~~~~i--~~~~~~~pW~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~ 192 (395)
T PF05686_consen 115 SDTADILFPDFSFWGWPEINIGPWDEDRKDI--KEGNERVPWEDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARIT 192 (395)
T ss_pred cCcCccccCCccccccccccCCchHHHhhhh--hccccCCChhhcccceEECCCcCCCcchhHHHHHhccCCccceeeec
Confidence 9999999999999843 456666655555 4778899999999999999999855 599999999999999999999
Q ss_pred cccccchhH---------h--hhCCC-----------------C------CCCccccccc-----------CCC--Chhh
Q psy10617 193 NFFFFKSEE---------E--KYGPK-----------------T------KHVSFFEFFD-----------VKE--DLSD 225 (279)
Q Consensus 193 ~~~~~~~~~---------~--~~g~~-----------------~------~~~~y~d~f~-----------V~~--D~sD 225 (279)
.++|-.... + +|+.. + ..+.|.+||. |+. ||+|
T Consensus 193 ~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sd 272 (395)
T PF05686_consen 193 KQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSD 272 (395)
T ss_pred hhhhhhhccccccccCHHHHhhhheeecCCCceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhh
Confidence 887643211 1 12110 1 1467888887 777 8999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhccC
Q psy10617 226 LVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNFNFMGS 275 (279)
Q Consensus 226 L~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eYa~~s 275 (279)
|.++|+|+++||++|++||+||++|++++|+|++++|||++||+|||++-
T Consensus 273 L~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eYa~l~ 322 (395)
T PF05686_consen 273 LEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDVYCYWRRLLLEYAKLL 322 (395)
T ss_pred HHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999874
No 3
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=100.00 E-value=1.4e-45 Score=335.60 Aligned_cols=188 Identities=30% Similarity=0.533 Sum_probs=157.1
Q ss_pred CCCCeEEEeccCCCCCccC---------CCCCeeeeccCCCccceeccCCCcccc----cccccchhhhhhhhhcCCCCC
Q psy10617 87 HLPDLEFWSNLGDWPLAKS---------AQYPMFSWCGSNETFDIIMPTYDITES----SLENMGRVSLDMLSVQGNNHK 153 (279)
Q Consensus 87 ~lPDvEf~~n~~D~P~~~~---------~~~Pifs~cks~~~~DIl~Pd~~f~e~----~~~~~~~~~~d~~~~~~~~~~ 153 (279)
+|||+||+||++|+|.+.+ +++||||+||++++.||+||+|+||++ ++++++..+..+ .++++++
T Consensus 1 ~lPD~ef~~n~~D~p~~~~~~~~~~~~~~~~Pifs~~k~~~~~DIl~P~~~~w~~w~~~~~~~~~~~~~~~--~~~~~~~ 78 (256)
T smart00672 1 RVPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAGWPEVNGRPWDKDLMEL--EEGNKRT 78 (256)
T ss_pred CCCCeeeeeeCCCccccccCCCCCcccCCCCCeEEecCCCCCCceEecCHHHhCCCccccCcchHHHHHHH--HhhhcCC
Confidence 4899999999999998865 269999999999999999999999954 344455444444 3567799
Q ss_pred CcccccCcEEeecCCCch-hHHHHHHHHccCCCCccceeccccccchh--------------Hh--hhCCC---------
Q psy10617 154 KWEQKEPKVFWRGRDSNR-DRLKLIDIARQHPDLFNASLTNFFFFKSE--------------EE--KYGPK--------- 207 (279)
Q Consensus 154 pW~~K~~kafWRG~~s~~-~R~~Lv~~s~~~p~l~da~~t~~~~~~~~--------------~~--~~g~~--------- 207 (279)
||++|+++|||||++++. +|++|+++++++|+++||++|.++|+... ++ +|+..
T Consensus 79 pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~~S 158 (256)
T smart00672 79 KWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVAWS 158 (256)
T ss_pred CccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCccch
Confidence 999999999999999977 99999999999999999999987765211 11 11100
Q ss_pred --------C------CCCccccccc-----------CCCChhh--HHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhH
Q psy10617 208 --------T------KHVSFFEFFD-----------VKEDLSD--LVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDI 260 (279)
Q Consensus 208 --------~------~~~~y~d~f~-----------V~~D~sD--L~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v 260 (279)
+ ..+.|.+||. |+.|+|| |+++|+|+++||++||+||+||++|++++|+++++
T Consensus 159 ~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~ 238 (256)
T smart00672 159 VRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDV 238 (256)
T ss_pred hhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 0 1346778777 7889988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCC
Q psy10617 261 LCYHAVLFNFNFMGSK 276 (279)
Q Consensus 261 ~cY~~~LL~eYa~~s~ 276 (279)
+|||++||+|||++.+
T Consensus 239 ~~Y~~~ll~eya~l~~ 254 (256)
T smart00672 239 YDYMFHLLQEYAKLLK 254 (256)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 4
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.30 E-value=0.011 Score=44.58 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYH 264 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~ 264 (279)
|.+|+.++|+++.+||++.++||++|++++++..+-+.....+
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t~~~~~~~i 90 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARERVLKRHTWEHRAEQI 90 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999999999999999999999999888877776654
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=87.55 E-value=1.8 Score=41.28 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNFN 271 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eY 271 (279)
.|.++|.++|..+.++++..++++++|++++++.++.+.+..-+..++++.
T Consensus 358 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 358 ESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999988877777653
No 6
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=0.54 Score=45.30 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q psy10617 219 VKEDLSDLVERVRWAQDNEDLVVVMVRNAQILARE 253 (279)
Q Consensus 219 V~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~ 253 (279)
|-.|..|+.++++++..||+++++||++|.+=+..
T Consensus 310 v~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~ 344 (373)
T COG4641 310 VYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLA 344 (373)
T ss_pred EecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHH
Confidence 57799999999999999999999999999985543
No 7
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.84 E-value=3.7 Score=37.15 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDI 260 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v 260 (279)
.|.+++.++|..+.+++++.++++++|++++.++.+.+.+
T Consensus 317 ~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 317 GDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 4688999999999999999999999999999998887654
No 8
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=78.44 E-value=6.3 Score=37.98 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHhhh-ChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQD-NEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNF 270 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~-hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~e 270 (279)
.|.++|.++|..+.+ ++++.++++++|++++.+..+.+.+..=+..++++
T Consensus 355 ~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 355 NDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 478899999999988 99999999999999999999999888877776654
No 9
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=77.98 E-value=5.3 Score=38.79 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=42.8
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFN 269 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~ 269 (279)
.|.++|.++|..+.++++.+++++++|++++.+..+.+.+..=+..+|+
T Consensus 391 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 391 LDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999998888776666653
No 10
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=77.78 E-value=6.2 Score=37.42 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=43.0
Q ss_pred CCCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q psy10617 219 VKEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLF 268 (279)
Q Consensus 219 V~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL 268 (279)
|..|.+++.++|..+.++++.+++++++|++++.+..+.+.+..=+..+|
T Consensus 345 v~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 345 VAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred eCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 56678899999999999999999999999999998888887776655554
No 11
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=77.26 E-value=8 Score=35.94 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=42.8
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNF 270 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~e 270 (279)
.|.+++.++|..+.++++..++++++|++++.+.++.+.+..-+..+.++
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998887766665543
No 12
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=76.54 E-value=8 Score=36.76 Aligned_cols=52 Identities=8% Similarity=0.051 Sum_probs=46.1
Q ss_pred CCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHh
Q psy10617 220 KEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNFNF 272 (279)
Q Consensus 220 ~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eYa 272 (279)
..|.++|.++|..+.++++. ++++++|++.+.+..+.+.+..=+..+|+.|+
T Consensus 328 ~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 328 PMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred CCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 34678999999999999875 78999999999999999999998899998886
No 13
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=74.29 E-value=7.8 Score=29.45 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=28.0
Q ss_pred eeEEeeeeecCCCceEEEeeecccccceEEEEEecC
Q psy10617 20 CRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKE 55 (279)
Q Consensus 20 ~~~~~~~~~~~dg~~~~r~~~~~~~~~~~~~v~~~~ 55 (279)
.++-+++.|..||+|.+.|+-... ..-.|.|...+
T Consensus 44 ~~~~~~v~d~~dGty~v~y~P~~~-G~~~i~V~~~g 78 (93)
T smart00557 44 KKVPVEVKDNGDGTYTVSYTPTEP-GDYTVTVKFGG 78 (93)
T ss_pred CeeEeEEEeCCCCEEEEEEEeCCC-EeEEEEEEECC
Confidence 356678899999999999998874 46778877765
No 14
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=72.14 E-value=13 Score=34.12 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=42.2
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFN 269 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~ 269 (279)
|.+++.++|..+.++++..++++++|++++.+..+.+.+..-|..+++
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999999899999988877666654
No 15
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=71.68 E-value=11 Score=33.46 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVL 267 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~L 267 (279)
.|.+++.++|..+.+++++.++++++|++++++..+.+.+..=+..+
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999888776544433
No 16
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=70.11 E-value=14 Score=33.52 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=39.4
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLF 268 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL 268 (279)
.|.+++.++|..+.++++..++++++|++++.+..+.+.+..=+..++
T Consensus 315 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 315 GDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 368899999999999999999999999999988888776655444443
No 17
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=67.29 E-value=16 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=28.8
Q ss_pred eEEeeeeecCCCceEEEeeecccccceEEEEEecC
Q psy10617 21 RIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKE 55 (279)
Q Consensus 21 ~~~~~~~~~~dg~~~~r~~~~~~~~~~~~~v~~~~ 55 (279)
.+.+++.|..||+|.+.|.... +..-+|.|+..+
T Consensus 59 ~~~~~v~~~~~G~y~v~y~p~~-~G~y~i~V~~~g 92 (101)
T PF00630_consen 59 PVPVEVIDNGDGTYTVSYTPTE-PGKYKISVKING 92 (101)
T ss_dssp EEEEEEEEESSSEEEEEEEESS-SEEEEEEEEESS
T ss_pred ccceEEEECCCCEEEEEEEeCc-cEeEEEEEEECC
Confidence 6777889999999999999877 577888888765
No 18
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=66.63 E-value=14 Score=32.44 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=39.2
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVL 267 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~L 267 (279)
|.+++.++|..+.++++..+++++++++.+.+..+.+.+..=+..+
T Consensus 327 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03801 327 DPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEV 372 (374)
T ss_pred CHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 4789999999999999999999999999998988888776544443
No 19
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=65.75 E-value=12 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDI 260 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v 260 (279)
|.+++.++|..+.++++..++++++|++++.+..+.+.+
T Consensus 313 ~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~ 351 (355)
T cd03799 313 DPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQ 351 (355)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 788999999999999999999999999999988877654
No 20
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=65.38 E-value=12 Score=35.83 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=31.0
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHh
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREK 254 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~ 254 (279)
.|.++|.++|..+.++++.+++++++|++++.++
T Consensus 373 ~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 373 EDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999876
No 21
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=63.88 E-value=13 Score=33.25 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILC 262 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~c 262 (279)
|.++|.++|.-+.+++++.++++++|++++.+..+.+.+..
T Consensus 351 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 391 (394)
T cd03794 351 DPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAE 391 (394)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 68899999999999999999999999999998888776643
No 22
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=63.00 E-value=15 Score=33.51 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYH 264 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~ 264 (279)
.|.++|.++|+.+.++++..++++++|++++.+.++.+.+..-+
T Consensus 321 ~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l 364 (367)
T cd05844 321 GDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKL 364 (367)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 46789999999999999999999999999999988888766543
No 23
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=61.76 E-value=19 Score=31.69 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILC 262 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~c 262 (279)
|..++.++|+.+.+|++..++++++|++++.+..+.+.+..
T Consensus 315 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 355 (359)
T cd03808 315 DAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVK 355 (359)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 57889999999999999999999999999888888777653
No 24
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=60.64 E-value=21 Score=31.96 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=37.5
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAV 266 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~ 266 (279)
.|.+++.++|+.+.++++..++++++|++++++ ++.+.+..=+..
T Consensus 319 ~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 319 GDPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHH
Confidence 467899999999999999999999999999988 777776544333
No 25
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=58.54 E-value=33 Score=31.77 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=37.9
Q ss_pred hhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q psy10617 224 SDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLF 268 (279)
Q Consensus 224 sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL 268 (279)
.+|.++|..+.++++..++++++|++.+.+..+.+.+..=+..++
T Consensus 340 ~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y 384 (388)
T TIGR02149 340 AELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMY 384 (388)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 689999999999999999999999999998888887765444333
No 26
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=58.41 E-value=24 Score=34.70 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=38.9
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAV 266 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~ 266 (279)
.|.++|.++|..+.++++..++++++|++.++++.+.+.+..-+..
T Consensus 427 ~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~ 472 (475)
T cd03813 427 ADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRR 472 (475)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4688999999999999999999999999999999886666554433
No 27
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=58.06 E-value=24 Score=33.32 Aligned_cols=40 Identities=18% Similarity=-0.058 Sum_probs=35.2
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDI 260 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v 260 (279)
.|.++|.++|..+.++++..++++++|++++.++.+.+.+
T Consensus 351 ~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~ 390 (396)
T cd03818 351 FDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVC 390 (396)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4678899999999999999999999999999988876544
No 28
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=56.83 E-value=25 Score=31.85 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=36.5
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q psy10617 226 LVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVL 267 (279)
Q Consensus 226 L~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~L 267 (279)
+.++|+.+.++++..++++++|++.+.+.++.+.+..=+..+
T Consensus 320 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 320 LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999999888888776655444
No 29
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=52.82 E-value=26 Score=33.61 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILC 262 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~c 262 (279)
|-++|.++|..+.++++..++++++|++++.+..+.+..+-
T Consensus 363 ~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~ 403 (407)
T cd04946 363 TPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYR 403 (407)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHH
Confidence 56789999999999999999999999999999888776543
No 30
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=50.35 E-value=35 Score=31.37 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCY 263 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY 263 (279)
|.++|.++|+.+.++++..++++++|++++.+..+.+.+..-
T Consensus 354 ~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 395 (398)
T cd03800 354 DPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAAR 395 (398)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 578899999999999999999999999999888887766543
No 31
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=50.32 E-value=32 Score=30.51 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHH
Q psy10617 220 KEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDIL 261 (279)
Q Consensus 220 ~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~ 261 (279)
..+-+++.++|+.+.++++..++++++|++++.+..+.+.+.
T Consensus 329 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 370 (375)
T cd03821 329 DDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIA 370 (375)
T ss_pred CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 444589999999999999999999999999988888877654
No 32
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=48.71 E-value=40 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=29.2
Q ss_pred hHHHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy10617 225 DLVERVRWAQDNEDLVVVMVRNAQILAREKL 255 (279)
Q Consensus 225 DL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L 255 (279)
++.++|..+.++++..++++++|++++.++.
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998766
No 33
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=45.76 E-value=63 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFN 269 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~ 269 (279)
+.+++.++|..+.++++..++++++|++.+.+..+.+.+..=|..+++
T Consensus 323 ~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 456778899988899999999999999999888888777765555543
No 34
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=44.85 E-value=32 Score=31.10 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=32.5
Q ss_pred CChhhHHHHHH-HhhhChHHHHHHHHHHHHHHHHhcCchh
Q psy10617 221 EDLSDLVERVR-WAQDNEDLVVVMVRNAQILAREKLMPQD 259 (279)
Q Consensus 221 ~D~sDL~e~I~-w~~~hd~~A~~IA~~a~~f~~~~L~~~~ 259 (279)
.|.+++.++|. .+..++++.++++++|++++.++.+.+.
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 46788999994 6667899999999999999988876543
No 35
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=44.33 E-value=54 Score=29.08 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=28.6
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILARE 253 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~ 253 (279)
|..+|.++|..+.+|++..+++++++++....
T Consensus 315 d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 346 (359)
T cd03823 315 DAEDLAAALERLIDDPDLLERLRAGIEPPRSI 346 (359)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH
Confidence 57889999999999999999999999887754
No 36
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=43.69 E-value=75 Score=29.77 Aligned_cols=48 Identities=13% Similarity=-0.044 Sum_probs=37.7
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFN 269 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~ 269 (279)
.|.+++.++|..+.++++..++++++|+++++ .++.+.+..=+..+.+
T Consensus 353 ~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~-~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 353 HDPADWADALARLLDDPRTRIRMGAAAVEHAA-GFSWAATADGLLSSYR 400 (405)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999885 4677766654444443
No 37
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=43.40 E-value=46 Score=30.83 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHH
Q psy10617 219 VKEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDIL 261 (279)
Q Consensus 219 V~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~ 261 (279)
++.|.+++.++|..+.++++..++++++|++++++..+.+.+.
T Consensus 347 ~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~ 389 (392)
T cd03805 347 CEPTPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFA 389 (392)
T ss_pred eCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 4557788999999999999999999999999998888877654
No 38
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=43.33 E-value=48 Score=28.96 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=31.3
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDI 260 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v 260 (279)
|.+++.++|..+.++|+..++++++|++++++ .+.+.+
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~ 342 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAER-FSIENI 342 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-hCHHHH
Confidence 57899999999999999999999999877754 454443
No 39
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=40.68 E-value=69 Score=31.21 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHh
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREK 254 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~ 254 (279)
.|.++|.++|..+.++++..++++++|++++.+|
T Consensus 385 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~f 418 (465)
T PLN02871 385 GDVDDCVEKLETLLADPELRERMGAAAREEVEKW 418 (465)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999988653
No 40
>PHA01630 putative group 1 glycosyl transferase
Probab=38.82 E-value=82 Score=29.62 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=38.9
Q ss_pred CCCChhhHHHHHHHhhhCh--HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy10617 219 VKEDLSDLVERVRWAQDNE--DLVVVMVRNAQILAREKLMPQDILCYHAVLFNFN 271 (279)
Q Consensus 219 V~~D~sDL~e~I~w~~~hd--~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eY 271 (279)
+..|-.++.+++.-+..++ ++.++...++..++.+..+.+.+..-+.+++++|
T Consensus 277 v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~~ 331 (331)
T PHA01630 277 LDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEKY 331 (331)
T ss_pred cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 3446666766666655553 6677777777777788899999999888988876
No 41
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=38.81 E-value=77 Score=27.85 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=37.9
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFN 269 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~ 269 (279)
.|.+++.++|..+.+++.. ++++++++.+.+..+.+.+..-+..+++
T Consensus 329 ~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 329 GDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred CCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4678899999999999887 7888999998888888877665555554
No 42
>PLN02949 transferase, transferring glycosyl groups
Probab=38.01 E-value=99 Score=30.64 Aligned_cols=49 Identities=8% Similarity=-0.066 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHhhh-ChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQD-NEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNFN 271 (279)
Q Consensus 222 D~sDL~e~I~w~~~-hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eY 271 (279)
|.+++.++|..+.+ +++++++++++|++.+.+ .+.+....=+..++.+.
T Consensus 408 ~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~-FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 408 TVEEYADAILEVLRMRETERLEIAAAARKRANR-FSEQRFNEDFKDAIRPI 457 (463)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence 45788899998877 568889999999999855 88887766665555544
No 43
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=34.30 E-value=60 Score=30.39 Aligned_cols=48 Identities=8% Similarity=-0.031 Sum_probs=37.5
Q ss_pred CCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q psy10617 220 KEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLF 268 (279)
Q Consensus 220 ~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL 268 (279)
..|.++|.++|+.+.++++..++++++++++..++ ..+.+...+..++
T Consensus 322 ~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~-s~~~i~~~i~~~~ 369 (380)
T PRK13609 322 IRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPE-PADHIVDDILAEN 369 (380)
T ss_pred ECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHhh
Confidence 35778999999999999999999999998877555 6666666555544
No 44
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=33.93 E-value=1.5e+02 Score=28.03 Aligned_cols=52 Identities=8% Similarity=-0.053 Sum_probs=41.3
Q ss_pred CCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy10617 220 KEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNFN 271 (279)
Q Consensus 220 ~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eY 271 (279)
..|-.+|.++|..+.+++.+.+.+.+++.+++++..+.+.+.--+..+.++-
T Consensus 317 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 317 EPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred CCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 4467789999999988888888889999999999888887776655555543
No 45
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=32.67 E-value=1.2e+02 Score=30.33 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=37.9
Q ss_pred hhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy10617 223 LSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNF 270 (279)
Q Consensus 223 ~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~e 270 (279)
.+.|.++|..+. +++..++++++|.+.+ +..+.+.+..-|..||++
T Consensus 454 ~~~la~~I~~ll-~~~~~~~~~~~a~~~a-~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 454 ITALAEKIVEYF-NSNDIDAFHEYSYQIA-EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred HHHHHHHHHHHh-ChHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Confidence 456788888887 5667999999999976 558889999999998875
No 46
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=32.44 E-value=75 Score=28.36 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=31.9
Q ss_pred CCChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchh
Q psy10617 220 KEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQD 259 (279)
Q Consensus 220 ~~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~ 259 (279)
..|..++.++|+.+.++++..++++++|++++.+ .+.+.
T Consensus 320 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~sw~~ 358 (365)
T cd03809 320 PLDPEALAAAIERLLEDPALREELRERGLARAKR-FSWEK 358 (365)
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-CCHHH
Confidence 4468899999999999999999999999987754 44433
No 47
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=32.39 E-value=68 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=19.7
Q ss_pred cCCCceEEEeeecccccceEEEEEecC
Q psy10617 29 TTDGVIIVRYKLYEVCYSFNIVIISKE 55 (279)
Q Consensus 29 ~~dg~~~~r~~~~~~~~~~~~~v~~~~ 55 (279)
..||+|++|...- ....+.+.|...+
T Consensus 19 ~~~G~FLvR~s~~-~~~~~~Lsv~~~~ 44 (77)
T PF00017_consen 19 KPDGTFLVRPSSS-KPGKYVLSVRFDG 44 (77)
T ss_dssp SSTTEEEEEEESS-STTSEEEEEEETT
T ss_pred CCCCeEEEEeccc-ccccccccccccc
Confidence 5799999999875 3455777777766
No 48
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=31.72 E-value=52 Score=35.93 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=44.9
Q ss_pred ceeEEeeeeecCCCc---eEEEeeecccccceEEEEEecCCcceeeeccCc-cchhhHHHHHHHHHHhhhhcCCCCeEEE
Q psy10617 19 QCRIWTNVLHTTDGV---IIVRYKLYEVCYSFNIVIISKEDQTHVYRQCYG-QHTGFKMFMDNLLLSLTRKVHLPDLEFW 94 (279)
Q Consensus 19 ~~~~~~~~~~~~dg~---~~~r~~~~~~~~~~~~~v~~~~~~~~~Yr~~~~-~~~~f~~~~d~~Ll~L~r~~~lPDvEf~ 94 (279)
.-.+.|..+|..-|+ .|..|++-+. .| +-++...-+ .|+||++.+|-+|+.+.+++-||-++-.
T Consensus 563 ~~slriASIDIGGGTTDL~It~Y~ld~G-----------~g-~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~a 630 (1002)
T PF07520_consen 563 GPSLRIASIDIGGGTTDLMITQYRLDDG-----------QG-SNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQA 630 (1002)
T ss_pred CCceEEEEEecCCCcceeeEEEEEeccC-----------Cc-ceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHH
Confidence 356778899999997 6888887541 11 112222333 3899999999999999998877765544
No 49
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=31.61 E-value=60 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQIL 250 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f 250 (279)
.|..++.++|+-+.++++..+.++++|+++
T Consensus 143 ~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 143 NDIEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 367899999999999999999999999985
No 50
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=30.55 E-value=1.3e+02 Score=26.92 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=34.9
Q ss_pred CChhhHHHHHHHhhhC-hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDN-EDLVVVMVRNAQILAREKLMPQDILCYHAVLF 268 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~h-d~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL 268 (279)
.|.+++.++|..+.++ ++..+.++++ ++++.+.++.+.+..-+..++
T Consensus 311 ~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 311 SDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHh
Confidence 4678899999988754 5555555555 888888889888877666664
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=29.92 E-value=57 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHhhhC---hHHHHHHHHHHHHHHHHhcCc
Q psy10617 222 DLSDLVERVRWAQDN---EDLVVVMVRNAQILAREKLMP 257 (279)
Q Consensus 222 D~sDL~e~I~w~~~h---d~~A~~IA~~a~~f~~~~L~~ 257 (279)
|.++|.++|..+.++ |++.++++++|+++.+.....
T Consensus 367 d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~~~ 405 (415)
T cd03816 367 DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRWDE 405 (415)
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCHHH
Confidence 778999999999888 899999999999998655443
No 52
>KOG0518|consensus
Probab=29.64 E-value=54 Score=35.89 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=38.4
Q ss_pred ecccccCCCCceeEEeeeeecCCCceEEEeeecccccceEEEEEecC
Q psy10617 9 VHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKE 55 (279)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~r~~~~~~~~~~~~~v~~~~ 55 (279)
.|||+++.++.-.+.+++.|+.||++=|-|.--+ .+.-+|+|+..+
T Consensus 788 yGgLsi~~~Gpskvd~~~~d~~dGt~kV~ytPte-pG~Y~I~i~Fad 833 (1113)
T KOG0518|consen 788 YGGLSISVQGPSKVDLNVEDREDGTCKVSYTPTE-PGTYIINIKFAD 833 (1113)
T ss_pred CCceEEEEeCCcccccceeecCCCeEEEEEeCCC-CceEEEEEEEcC
Confidence 4889999999999999999999999999887654 555777777665
No 53
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=27.63 E-value=1.5e+02 Score=26.25 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=32.0
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDIL 261 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~ 261 (279)
|-.++.++|+.+.+|++..+++++++.+++ +..+.+.+.
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 356 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFL 356 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHH
Confidence 456699999999999999999999999998 555655553
No 54
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=25.85 E-value=78 Score=29.23 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.6
Q ss_pred hhhHHHHHHHhhhChHHHHHHHHHHHHHHH
Q psy10617 223 LSDLVERVRWAQDNEDLVVVMVRNAQILAR 252 (279)
Q Consensus 223 ~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~ 252 (279)
.++|.++|+.+.++++..++++++|+++++
T Consensus 311 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (357)
T PRK00726 311 PEKLAEKLLELLSDPERLEAMAEAARALGK 340 (357)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999988863
No 55
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=25.32 E-value=59 Score=29.67 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=28.0
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILARE 253 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~ 253 (279)
+.++|.++|+.+.++++..++++++|++++.+
T Consensus 307 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 338 (348)
T TIGR01133 307 LPEKLLEALLKLLLDPANLEAMAEAARKLAKP 338 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCc
Confidence 37899999999999999999999999887644
No 56
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.76 E-value=59 Score=29.66 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHH
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAR 252 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~ 252 (279)
|.++|.++|+.+.++++..++++++|+++++
T Consensus 310 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 310 TPERLAAALLELLSDPERLKAMAEAARSLAR 340 (350)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 6889999999988899999999999988765
No 57
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=24.44 E-value=73 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=21.7
Q ss_pred hhhHHHHHHHhhhChHHHHHHHHHHHH
Q psy10617 223 LSDLVERVRWAQDNEDLVVVMVRNAQI 249 (279)
Q Consensus 223 ~sDL~e~I~w~~~hd~~A~~IA~~a~~ 249 (279)
+.-+.++.+|+++||++|.+|......
T Consensus 240 l~a~~~a~~~~~~~p~~a~~~~~~~~~ 266 (335)
T COG0715 240 LKALAKATAWANAHPDEAAEILAKAAG 266 (335)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHhc
Confidence 456888899999999998888776644
No 58
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=22.74 E-value=1.4e+02 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=29.1
Q ss_pred ChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHh
Q psy10617 222 DLSDLVERVRWAQDNEDLVVVMVRNAQILAREK 254 (279)
Q Consensus 222 D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~ 254 (279)
|.++|.++|..+.++++..++++++|++.+.+|
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999886443
No 59
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=22.66 E-value=1.5e+02 Score=28.21 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=39.3
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNF 270 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~e 270 (279)
.|.++|.++|+-+.++++..+++++|+++.++. ...+.+...+..++.+
T Consensus 323 ~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~-~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 323 DTPEEAIKIVASLTNGNEQLTNMISTMEQDKIK-YATQTICRDLLDLIGH 371 (391)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhh
Confidence 467788999998889999999999999998755 5666777777777655
No 60
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=22.60 E-value=17 Score=30.49 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=47.1
Q ss_pred ccceeeecccccCCCCceeEEeeeeecCCCceEEEeeeccccc-----------ceEEEEEecCCcceeeeccCccchh
Q psy10617 3 NNIVVRVHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCY-----------SFNIVIISKEDQTHVYRQCYGQHTG 70 (279)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~r~~~~~~~~-----------~~~~~v~~~~~~~~~Yr~~~~~~~~ 70 (279)
.|+|++++|-.+.+++..|+- -+=+++-|+.+|=++..-+ -|.|+.+.+....+.|.-.|+.+.+
T Consensus 43 ~~~tVti~G~~Lege~K~~~I---~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkGK~dv~f~vYsYdDHVD 118 (149)
T PF10787_consen 43 ENTTVTIDGKRLEGEDKSQII---DQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKGKKDVTFFVYSYDDHVD 118 (149)
T ss_pred cceEEEECCeecCchHHHHHH---HHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccCcceeEEEEEecccHHH
Confidence 478999999999876655432 2446788999998876433 3777777776668888888876544
No 61
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=22.13 E-value=1.4e+02 Score=20.18 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHH------------HhcCc-hhHHHHHHHHHHHHh
Q psy10617 238 DLVVVMVRNAQILAR------------EKLMP-QDILCYHAVLFNFNF 272 (279)
Q Consensus 238 ~~A~~IA~~a~~f~~------------~~L~~-~~v~cY~~~LL~eYa 272 (279)
..|+-+|++|.+|-. .||.+ .....|+..++.+|.
T Consensus 6 ~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~~~~~h~yy~~~l~~~~ 53 (54)
T smart00648 6 KTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYR 53 (54)
T ss_pred HHHHHHHHhhHHHHHHHHHhcCCCCCCccCCCCCCCcHHHHHHHHHHh
Confidence 457777778877653 23444 456788888888885
No 62
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=21.99 E-value=67 Score=27.24 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=15.9
Q ss_pred hhhHHHHHHHhhhChHHH
Q psy10617 223 LSDLVERVRWAQDNEDLV 240 (279)
Q Consensus 223 ~sDL~e~I~w~~~hd~~A 240 (279)
+.-+.++++|+++||++|
T Consensus 199 ~~a~~~a~~~~~~~p~eA 216 (216)
T PF09084_consen 199 LKAYAKAIDWIRANPDEA 216 (216)
T ss_dssp HHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhChhhC
Confidence 567889999999999997
No 63
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=21.68 E-value=1.9e+02 Score=21.52 Aligned_cols=33 Identities=6% Similarity=-0.085 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Q psy10617 241 VVMVRNAQILAREKLMPQDILCYHAVLFNFNFM 273 (279)
Q Consensus 241 ~~IA~~a~~f~~~~L~~~~v~cY~~~LL~eYa~ 273 (279)
++||+.-+.=+.-.+.-+++.+|.+.+|+.|.+
T Consensus 2 ~~iarefr~kV~~~ie~EaEkd~lY~~Lr~YHq 34 (79)
T cd07353 2 RKIAREFRHKVELLIDNEAEKDYLYDVLRMYHQ 34 (79)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 367777766666678899999999999999974
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=20.67 E-value=3.2e+02 Score=30.34 Aligned_cols=49 Identities=6% Similarity=-0.136 Sum_probs=37.8
Q ss_pred CChhhHHHHHHHhhhChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy10617 221 EDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLFNF 270 (279)
Q Consensus 221 ~D~sDL~e~I~w~~~hd~~A~~IA~~a~~f~~~~L~~~~v~cY~~~LL~e 270 (279)
.|.++|.++|..+.++++..++++++|++.+++ .+-+.+..=+..++..
T Consensus 622 ~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 622 HDQQAIADALLKLVADKQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIAS 670 (1050)
T ss_pred CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999875 5655555544444443
No 65
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=20.25 E-value=1.4e+02 Score=20.31 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHH------------HhcCc--hhHHHHHHHHHHHHh
Q psy10617 238 DLVVVMVRNAQILAR------------EKLMP--QDILCYHAVLFNFNF 272 (279)
Q Consensus 238 ~~A~~IA~~a~~f~~------------~~L~~--~~v~cY~~~LL~eYa 272 (279)
..|+-||++|.+|-. .||.+ ...+.|+...|.+|.
T Consensus 7 ~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y~ 55 (55)
T PF01805_consen 7 KTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEYK 55 (55)
T ss_dssp HHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHhC
Confidence 345666666665541 46774 577889999999883
Done!