RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10617
(279 letters)
>gnl|CDD|218692 pfam05686, Glyco_transf_90, Glycosyl transferase family 90. This
family of glycosyl transferases are specifically
(mannosyl) glucuronoxylomannan/galactoxylomannan -beta
1,2-xylosyltransferases, EC:2.4.2.-.
Length = 281
Score = 120 bits (303), Expect = 1e-32
Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 21 RIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKEDQTHVYRQCYGQHTGFK-MFMDNLL 79
W T + V + K + F VII+ VY + YG+ + +F +
Sbjct: 18 EPWRETGITREMVERAKRKAH-----FRYVIINGR----VYVETYGESFQTRDVFTIWGI 68
Query: 80 LSLTRKV--HLPDLEFWSNLGDWPLAKSAQY--------PMFSWCGSNETFDIIMPTYDI 129
L L RK LPDLE N GDWP+ K Y P+FS+CG ++T DI+ P +
Sbjct: 69 LQLLRKYPGRLPDLELMFNCGDWPVVKKRDYRGPNANPPPLFSYCGDDDTLDIVFPDWSF 128
Query: 130 TESSLENMGRVSLDMLSV-QGNNHKKWEQKEPKVFWRGRDS 169
N+GR L + +GN KWE +EP +WRG S
Sbjct: 129 WGWPEVNIGRWDLLRKDLKEGNTRVKWEDREPYAYWRGNPS 169
>gnl|CDD|214773 smart00672, CAP10, Putative lipopolysaccharide-modifying enzyme.
Length = 256
Score = 110 bits (278), Expect = 3e-29
Identities = 58/246 (23%), Positives = 84/246 (34%), Gaps = 64/246 (26%)
Query: 88 LPDLEFWSNLGDWPLAKS---------AQYPMFSWCGSNETFDIIMPTYDITESSLENMG 138
+PDLE N DWPL A P+FS+CGS+E DI+ P + E G
Sbjct: 2 VPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAGWPEVNG 61
Query: 139 RV--SLDMLSVQGNNHKKWEQKEPKVFWRGRDS-NRDRLKLIDIARQHPDLFNASLT-NF 194
R M +GN KW K +WRG + +RL LI + P+L NA +T
Sbjct: 62 RPWDKDLMELEEGNKRTKWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQD 121
Query: 195 FFFKSEEEKYGPKTKHVSFFEFFD------------------------------------ 218
+ K + E+ P K E
Sbjct: 122 WPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVAWSVRLKYILACDSVVLKVKPEYYEF 181
Query: 219 -------------VKEDLSD--LVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCY 263
+K DLS L E V W +++ + + ++ L +D+ Y
Sbjct: 182 FSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYDY 241
Query: 264 HAVLFN 269
L
Sbjct: 242 MFHLLQ 247
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 32.5 bits (75), Expect = 0.27
Identities = 13/34 (38%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 211 VSFFEFFDVKEDLSDLVERVRWAQDNEDLVVVMV 244
+ F EFF++KE+L + +E++R ++ DL+++MV
Sbjct: 458 MDFEEFFELKEELLEALEKLR-EEEGYDLLLLMV 490
>gnl|CDD|226237 COG3714, COG3714, Predicted membrane protein [Function unknown].
Length = 212
Score = 31.6 bits (72), Expect = 0.31
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 14/76 (18%)
Query: 36 VRYKLYEVCYSFNIVIISKEDQTHVYRQCYGQHTGFKMFMDNLLLSLTRKVHLPDLEFW- 94
+ + V S + + + YR Q FK LL + + W
Sbjct: 2 MMWSFIAVVLSVWLSVSA------SYRGPLWQRPAFKPLGALLLALAAWQAPMLSGRRWL 55
Query: 95 -------SNLGDWPLA 103
S LGD L
Sbjct: 56 IVAGLALSALGDALLL 71
>gnl|CDD|226519 COG4032, COG4032, Predicted thiamine-pyrophosphate-binding protein
[General function prediction only].
Length = 172
Score = 30.2 bits (68), Expect = 0.84
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 75 MDNLLLSLTRKVHLPDLEFWSNLGDWPLAKSAQYPMFSWCGSNETFDII-MPTYDIT--E 131
N L SL +P L S+ G AQ PM + + +PTY I E
Sbjct: 80 SINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPK--ILEGLELPTYTIIGPE 137
Query: 132 SSLENMGRVSLDML 145
+L + LD
Sbjct: 138 EALPLIENAILDAF 151
>gnl|CDD|180695 PRK06792, flgD, flagellar basal body rod modification protein;
Validated.
Length = 190
Score = 29.2 bits (65), Expect = 1.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 148 QGNNHKKWEQKEPKVFWRGRDSNRDRLKLIDIARQHPDLFNA 189
Q N QK P + +D D LKL + QH D FNA
Sbjct: 36 QANGVSASTQKTPGIM--DKD---DFLKLFLASFQHQDPFNA 72
>gnl|CDD|176267 cd04265, DUF619-NAGS-U, DUF619 domain of various N-acetylglutamate
Synthases (NAGS) of the urea (U) cycle of humans and
fish. This family includes the DUF619 domain of various
N-acetylglutamate synthases (NAGS) of the urea cycle
found in humans and fish, the DUF619 domain of the NAGS
of the fungal arginine-biosynthetic pathway (FABP), as
well as the DUF619 domain present in C-terminal of a NAG
kinase-like domain in a limited number of predicted
NAGSs found in bacteria and Dictyostelium. Ureogenic
NAGS is a mitochondrial enzyme catalyzing the formation
of NAG from acetylcoenzyme A and L-glutamate. NAGS is an
essential allosteric activator of carbamylphosphate
synthase I, the first and rate limiting enzyme of the
urea cycle. Domain architecture of ureogenic and fungal
NAGS consists of an N-terminal NAG kinase-like domain
and a C-terminal DUF619 domain. The DUF619 domain
function has yet to be characterized.
Length = 99
Score = 27.0 bits (60), Expect = 4.5
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 129 ITESSLENMGRVSLDMLSV------QGNNHKKWE---QKEPKVFWRGRDSNR 171
+T ++ + LD +V +G W + PK+FWR R +N
Sbjct: 26 VTNEEVDGV--PYLDKFAVSSSAQGEGTGEALWRRLRRDFPKLFWRSRSTNP 75
>gnl|CDD|176266 cd04264, DUF619-NAGS, DUF619 domain of various N-acetylglutamate
Synthases of the fungal arginine-biosynthetic pathway
and urea cycle found in humans and fish. DUF619-NAGS:
This family includes the DUF619 domain of various
N-acetylglutamate synthases (NAGS) of the urea cycle
found in humans and fish, the DUF619 domain of the NAGS
of the fungal arginine-biosynthetic pathway (FABP), as
well as the DUF619 domain present in C-terminal of a NAG
kinase-like domain in a limited number of predicted
NAGSs found in bacteria and Dictyostelium. Ureogenic
NAGS is a mitochondrial enzyme catalyzing the formation
of NAG from acetylcoenzyme A and L-glutamate. NAGS is an
essential allosteric activator of carbamylphosphate
synthase I, the first and rate limiting enzyme of the
urea cycle. Domain architecture of ureogenic and fungal
NAGS consists of an N-terminal NAG kinase-like domain
and a C-terminal DUF619 domain. The DUF619 domain
function has yet to be characterized.
Length = 99
Score = 26.2 bits (58), Expect = 7.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 129 ITESSLENMGRVSLDMLSV------QGNNHKKWE---QKEPKVFWRGRDSNR 171
E + LD +V +G + W + PK+FWR R +N
Sbjct: 26 TYEGVNNGV--PYLDKFAVSSSAQGEGTSDALWRRLRRDFPKLFWRSRKTNP 75
>gnl|CDD|178641 PLN03093, PLN03093, Protein SENSITIVITY TO RED LIGHT REDUCED 1;
Provisional.
Length = 273
Score = 27.5 bits (61), Expect = 8.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 111 FSWCGSNETFDIIMPTYDITESS-LENMGRVSLDMLSVQGNNHKKWEQKEPKVFW 164
F W G E FD P TES LE++G +LSV N + E +P +F+
Sbjct: 129 FDWIGDIEVFD---PVLSATESRVLESLG---CSVLSV--NEQGRREATKPTLFF 175
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 27.6 bits (61), Expect = 8.5
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 21/79 (26%)
Query: 97 LGDWPLAKSAQYPMFSWCGS----NETFDIIMPTYDITESSLENMG------RVSL---- 142
+G W + ++ P + CGS N TF++ + Y + L+N V L
Sbjct: 39 VGKWKIQRTQTSPKVTTCGSSQPNNNTFNVKITDY--KKYLLDNHYKFTSELYVILSDDF 96
Query: 143 ----DMLSVQGNNH-KKWE 156
DM GN H K W+
Sbjct: 97 VLYGDMHDTTGNEHRKNWK 115
>gnl|CDD|237418 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 639
Score = 27.7 bits (62), Expect = 9.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 180 ARQHPDLFNA--SLTNFFFFKSEEEKYGPKTKHVSFF 214
R HP L A L + + EKY P +K +FF
Sbjct: 329 CRSHPKLLEAYRRLLEYMDYL---EKYDPVSKKSAFF 362
>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
Length = 479
Score = 27.2 bits (61), Expect = 9.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 103 AKSAQYPMFSW 113
KSAQ P +SW
Sbjct: 219 GKSAQLPFYSW 229
>gnl|CDD|188126 TIGR01283, nifE, nitrogenase molybdenum-iron cofactor biosynthesis
protein NifE. This protein is part of the NifEN complex
involved in biosynthesis of the molybdenum-iron cofactor
used by the homologous NifDK complex of nitrogenase. In
a few species, the protein is found as a NifEN fusion
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 453
Score = 27.3 bits (61), Expect = 9.6
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 201 EEKYGPKTKHVSFFEFFDVKEDLSDLVERVRWAQDNEDLVVVMVRNAQILARE--KLMP 257
EEKYG SF+ D + L D+ + + +L + R +++ARE K+ P
Sbjct: 261 EEKYGIPYFEGSFYGIEDTSKALRDIADLF----GDPEL---LKRTEELIAREEAKIRP 312
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.434
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,211,182
Number of extensions: 1329827
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 27
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)