RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10617
(279 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 3e-07
Identities = 44/202 (21%), Positives = 62/202 (30%), Gaps = 52/202 (25%)
Query: 10 HGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFN-IVIISKEDQ-THVYRQC--Y 65
GL+I W L Y L + S I +I Q H
Sbjct: 211 QGLNILE------W---LENPSNTPDKDY-LLSIPISCPLIGVI----QLAHYVVTAKLL 256
Query: 66 GQHTGFKMFMDNLLLSLTRKVHLPDL---EFWSNLGDWP----LAKSAQYPMFSWCG--S 116
G G ++ + L T H L + W + A +F + G
Sbjct: 257 GFTPG-ELR--SYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-FIGVRC 310
Query: 117 NETFDIIMPTYDITESSLEN-MGRVSLDMLSVQGNNHKKWEQKEPKVFWRGRDSNRDRL- 174
E + I E SLEN G S MLS+ EQ + V +N L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQ---EQVQDYV----NKTNS-HLP 361
Query: 175 --KLIDIARQHPDLFNASLTNF 194
K ++I+ L N + N
Sbjct: 362 AGKQVEIS-----LVNGA-KNL 377
Score = 28.5 bits (63), Expect = 3.2
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 26/98 (26%)
Query: 180 ARQHPDLFNASL---TNFFFFKSEEEKYGPKTK---HVSFFEFFDVKEDLSDLVERVRWA 233
A Q + FN L T F +++E P T F + +S LVE +
Sbjct: 30 ASQLQEQFNKILPEPTE--GFAADDE---PTTPAELVGKFLGY------VSSLVEPSKVG 78
Query: 234 QDNEDLVVVMVR-NAQILAREKLMPQDILCYHAVLFNF 270
Q ++ L + + L DI HA+
Sbjct: 79 QFDQVLNLCLTEFENCYLEGN-----DI---HALAAKL 108
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 43.1 bits (101), Expect = 1e-05
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 6 VVRVHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKEDQ 57
V +V R+ VL DG IVRY++Y + + I +
Sbjct: 58 VFQVKVSAPEEQF-TRVGVQVLDRKDGSFIVRYRMYASYKNLKVEIKFQGQH 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.16
Identities = 44/333 (13%), Positives = 103/333 (30%), Gaps = 81/333 (24%)
Query: 1 LLNNIVVRVHGLDINGSRQCRIWTNVLHTTDGVI-----IVRYKLYEVCY---------- 45
+L + ++ +D N + + +N+ + +++ K YE C
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 46 ---SFNI---VIISKEDQTHVYRQCYGQHTGFKMFMDNLLLSLTRKVHLPDLEFWSNL-- 97
+FN+ ++++ + V T + +D+ ++LT L + +
Sbjct: 258 AWNAFNLSCKILLTTRFKQ-VTDFLSAATT-THISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 98 GDWPLAKSAQYPM-FSWCGSNETFDIIMPTY--DITESSLENMGRVSLDMLSVQGNNHKK 154
D P P S + + + L + SL++L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA------ 369
Query: 155 WEQKE--------PK----------VFWRGRDSNRDRL---KLID--IARQHPDLFNASL 191
E ++ P + W + + KL + + P S+
Sbjct: 370 -EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 192 TNFFF---FKSEEEKYGPKTKHVSFFEFFDVKEDLSDLVERVRWAQDNEDLVVVMVRN-- 246
+ + K E E H S + +++ + D++DL+ +
Sbjct: 429 PSIYLELKVKLENEY----ALHRSIVDHYNIPKTF-----------DSDDLIPPYLDQYF 473
Query: 247 AQILA---REKLMPQDILCYHAVLFNFNFMGSK 276
+ + P+ + + V +F F+ K
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.57
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 153 KKW-EQKEPKVFWRGRDSNRDRLKLIDIARQHPDLFNA 189
+KW E++ ++ S + + A++ + +N
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 28.4 bits (63), Expect = 3.1
Identities = 11/112 (9%), Positives = 26/112 (23%), Gaps = 14/112 (12%)
Query: 166 GRDSNRDRLKLIDIARQHPDLFNASL----TNF-----FFFKSEEEKYGPKTKHVSFFEF 216
R + + +L+ A NF ++F++ T
Sbjct: 187 ASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTP-----GATGTDPSQLL 241
Query: 217 FDVKEDLSDLVERVRWAQDNEDLVVVMVRNAQILAREKLMPQDILCYHAVLF 268
+ W+ E+ ++ N + +F
Sbjct: 242 PKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWHQSNSAAGTPYASMHSVF 293
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 28.1 bits (63), Expect = 4.0
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 180 ARQHPDLFNASLTNFFFFKSEEEKYGPKTKHVSFF 214
AR HP L++A + E++ P TK + F
Sbjct: 336 ARSHPKLYSA-YKRLLEHYTFLEEFEPITKKSALF 369
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase,
transferase; HET: COA; 2.67A {Maricaulis maris} PDB:
3s7y_A 3s6h_A*
Length = 460
Score = 27.3 bits (61), Expect = 6.9
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 155 WEQKEPKVFWRGRDSNRDRLKLIDIARQHPDLFNA 189
+ E VFWRG + +++ A P A
Sbjct: 425 VRRDEWTVFWRGEMGPVEVADVVEKAFALPPTLEA 459
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.434
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,332,941
Number of extensions: 247736
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 14
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)