RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10617
         (279 letters)



>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human
           (Homo sapiens), isoform I [TaxId: 9606]}
          Length = 139

 Score = 26.8 bits (59), Expect = 2.0
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 7   VRVHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVII 52
             V+GL + G +   I  ++L   +  + +R K      +FN+ + 
Sbjct: 58  FYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVT 103


>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester
          phosphodiesterase UgpQ {Agrobacterium tumefaciens
          [TaxId: 358]}
          Length = 240

 Score = 26.5 bits (57), Expect = 3.4
 Identities = 7/53 (13%), Positives = 16/53 (30%)

Query: 22 IWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKEDQTHVYRQCYGQHTGFKMF 74
          I  +V  + DGV+ V +       +     +     + +     G     +  
Sbjct: 33 IELDVRESADGVLYVIHDETLDRTTNGTGPVGHMLSSEIDTLDAGGWFDDRFK 85


>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
           TRCF {Escherichia coli [TaxId: 562]}
          Length = 233

 Score = 26.3 bits (57), Expect = 3.6
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 4   NIVVRVHGLDINGSRQCRIWTNVLHTTDGVIIVRYKLYEVCYSFNIVIISKEDQTHVYRQ 63
            + + +     +   Q +I   V      ++I  +KL +    F  + +   D+ H  R 
Sbjct: 132 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH--RF 189

Query: 64  CYGQHTGFKMFMDN---LLLSLT 83
                   K    N   L L+ T
Sbjct: 190 GVRHKERIKAMRANVDILTLTAT 212


>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId:
           4844]}
          Length = 222

 Score = 25.6 bits (55), Expect = 5.9
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 76  DNLLLSLTRKVHLPDLEFWSNLGDWPLAKSAQYPMFSWCGSNETFDIIMPTYDITESSLE 135
             ++L++           ++  G WP   S  Y     C SN     I       +SSL 
Sbjct: 25  GLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKDSSLY 84

Query: 136 NMGRVSLDMLSVQGNNHKKWEQ 157
           N         S QGNN+  W  
Sbjct: 85  NSMLTY--WPSNQGNNNVFWSH 104


>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
           kinesin eg5 [TaxId: 9606]}
          Length = 345

 Score = 25.3 bits (54), Expect = 8.2
 Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 10/130 (7%)

Query: 45  YSFNIVIISKEDQTHVYRQCYGQHTGFKMFMDNLLL--------SLTRKVHLPDLEFWSN 96
           Y+F++V  +   Q  VYR          +   N  +          T  +          
Sbjct: 49  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 108

Query: 97  LGDWPLAKSAQYPMFSWCGSNETFDIIMPTYDITESSLENMGRVSLDMLSVQGNNHKKWE 156
             +                  E        + +  S LE       D+L+   +  ++ +
Sbjct: 109 TWEEDPLAGIIPRTLHQI--FEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 166

Query: 157 QKEPKVFWRG 166
             +     RG
Sbjct: 167 MFDDPRNKRG 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,088,645
Number of extensions: 50596
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 9
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)