BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10618
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQC|A Chain A, Crystal Structure Of Phosphotyrosine-binding Domain From
The Human Tensin-like C1 Domain-containing Phosphatase
(tenc1)
Length = 157
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 74/93 (79%)
Query: 185 SITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQ 244
S+++A LL QGAAC+VLYL SV+TESLTGPQAV RA ++ P P AVVHFKVS+Q
Sbjct: 2 SLSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQ 61
Query: 245 GITLTDNKRQLFFRRHYPVASISYCGLDPEDSR 277
GITLTDN+R+LFFRRHYPV SI++ DP+D R
Sbjct: 62 GITLTDNQRKLFFRRHYPVNSITFSSTDPQDRR 94
>pdb|2LOZ|A Chain A, The Novel Binding Mode Of Dlc1 And Tensin2 Ptb Domain
Length = 147
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 73/92 (79%)
Query: 186 ITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQG 245
+++A LL QGAAC+VLYL SV+TESLTGPQAV RA ++ P P AVVHFKVS+QG
Sbjct: 1 MSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQG 60
Query: 246 ITLTDNKRQLFFRRHYPVASISYCGLDPEDSR 277
ITLTDN+R+LFFRRHYPV SI++ DP+D R
Sbjct: 61 ITLTDNQRKLFFRRHYPVNSITFSSTDPQDRR 92
>pdb|2DKQ|A Chain A, Solution Structure Of The Ptb Domain Of Kiaa1075 Protein
From Human
Length = 160
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 71/90 (78%)
Query: 188 SAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGIT 247
+A LL QGAAC+VLYL SV+TESLTGPQAV RA ++ P P AVVHFKVS+QGIT
Sbjct: 10 TAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGIT 69
Query: 248 LTDNKRQLFFRRHYPVASISYCGLDPEDSR 277
LTDN+R+LFFRRHYPV SI++ DP+D R
Sbjct: 70 LTDNQRKLFFRRHYPVNSITFSSTDPQDRR 99
>pdb|1WVH|A Chain A, Crystal Structure Of Tensin1 Ptb Domain
Length = 134
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 196 GAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQL 255
GAACNVL++ SV+ ESLTGPQA+++A+ P P A +VHFKVS+QGITLTDN+R+L
Sbjct: 1 GAACNVLFINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKL 60
Query: 256 FFRRHYPVASISYCGLDPEDSR 277
FFRRHYP+ ++++C LDP++ +
Sbjct: 61 FFRRHYPLNTVTFCDLDPQERK 82
>pdb|2GJY|A Chain A, Nmr Solution Structure Of Tensin1 Ptb Domain
Length = 144
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 196 GAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQL 255
GAACNVL++ SV+ ESLTGPQA+++A+ P P A +VHFKVS+QGITLTDN+R+L
Sbjct: 5 GAACNVLFINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKL 64
Query: 256 FFRRHYPVASISYCGLDPEDSR 277
FFRRHYP+ ++++C LDP++ +
Sbjct: 65 FFRRHYPLNTVTFCDLDPQERK 86
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 121 NELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPC 166
+LVRHFLIE P+GV++KGC +EP F SLSALV QHS+ P++LPC
Sbjct: 78 EQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPC 123
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 121 NELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPC 166
+LVRHFLIE P+GV++KGC +EP F SLSALV QHS+ P++LPC
Sbjct: 63 EQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPC 108
>pdb|1POC|A Chain A, Crystal Structure Of Bee-venom Phospholipase A2 In A
Complex With A Transition-state Analogue
Length = 134
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 64 IIPGTKWCGTGDIADTYFDLGSEIKLDKCCRTHDLCPSKIRAHTNRYNITNDSMYT 119
I PGT WCG G+ + +LG D CCRTHD+CP + A +++ +TN + +T
Sbjct: 2 IYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHT 57
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 290 CSCDKNFKSCLK-STKSAAADVMGEFYFNIFRVPC 323
C CD F CLK S + ++ +G+ YFN+ C
Sbjct: 61 CDCDDKFYDCLKNSADTISSYFVGKMYFNLIDTKC 95
>pdb|1OZY|A Chain A, Crystal Structure Of Phospholipase A2 (mipla3) From
Micropechis Ikaheka
pdb|1OZY|B Chain B, Crystal Structure Of Phospholipase A2 (mipla3) From
Micropechis Ikaheka
Length = 121
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 88 KLDKCCRTHDLCPSKIRAH 106
+LD+CC+THD C K + H
Sbjct: 40 ELDRCCQTHDYCYDKAKIH 58
>pdb|2QQP|A Chain A, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|C Chain C, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|E Chain E, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|G Chain G, Crystal Structure Of Authentic Providence Virus
Length = 556
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 25/97 (25%)
Query: 234 AAVVHFKVSSQGITLTDNKRQLFFRRHYPVASISYCGLDPED----------------SR 277
A +VH+K+++ +T + F+ HYP G DPE+ S
Sbjct: 438 AYIVHYKMNNPVFEMTGEENFGGFQFHYP-------GYDPENNALGLRGIVDTFENNFSS 490
Query: 278 CLTRPWCISKSHCSCDKNFKSCLKSTKSAAADVMGEF 314
+ W IS+S K + +T A +G+F
Sbjct: 491 AVVHFWGISQSATIVCKTYDGWEGTTN--AGSTVGQF 525
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,203,211
Number of Sequences: 62578
Number of extensions: 347073
Number of successful extensions: 591
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 34
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)