RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10618
(339 letters)
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1,
phosphotyrosine binding domain, PTB, TNS2, KIAA1075,
struct genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Length = 157
Score = 139 bits (352), Expect = 6e-41
Identities = 63/106 (59%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 185 SITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQ 244
S+++A LL QGAAC+VLYL SV+TESLTGPQAV RA ++ P P AVVHFKVS+Q
Sbjct: 2 SLSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQ 61
Query: 245 GITLTDNKRQLFFRRHYPVASISYCGLDPEDSRCLTRPWCISKSHC 290
GITLTDN+R+LFFRRHYPV SI++ DP+D R T P +
Sbjct: 62 GITLTDNQRKLFFRRHYPVNSITFSSTDPQD-RRWTNPDGTTSKIF 106
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus
gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Length = 134
Score = 131 bits (330), Expect = 5e-38
Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 196 GAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQL 255
GAACNVL++ SV+ ESLTGPQA+++A+ P P A +VHFKVS+QGITLTDN+R+L
Sbjct: 1 GAACNVLFINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKL 60
Query: 256 FFRRHYPVASISYCGLDPEDSR 277
FFRRHYP+ ++++C LDP++ +
Sbjct: 61 FFRRHYPLNTVTFCDLDPQERK 82
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 86.5 bits (214), Expect = 4e-21
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 103 IRAHTNRYNITNDSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPL 162
++ T + +LVRHFLIE P+GV++KGC +EP F SLSALV QHS+ P+
Sbjct: 60 LKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPI 119
Query: 163 ALPCRLSLPD 172
+LPC L +P
Sbjct: 120 SLPCCLRIPS 129
>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera} SCOP:
a.133.1.1
Length = 134
Score = 84.7 bits (209), Expect = 3e-20
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 64 IIPGTKWCGTGDIADTYFDLGSEIKLDKCCRTHDLCPSKIRAHTNRYNITNDSMYT 119
I PGT WCG G+ + +LG D CCRTHD+CP + A +++ +TN + +T
Sbjct: 2 IYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHT 57
Score = 51.2 bits (122), Expect = 3e-08
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 286 SKSHCSCDKNFKSCLKST-KSAAADVMGEFYFNIFRVPCIIDTP 328
++ C CD F CLK++ + ++ +G+ YFN+ C
Sbjct: 57 TRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNLIDTKCYKLEH 100
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 68.9 bits (168), Expect = 2e-14
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 195 QGAACNVLYLVSVDTESLTGPQAVTRAINSL---FGTKPLPHAAVVHFKVSSQGITLTDN 251
V +L S++ +S P V + + + H V+ + L D
Sbjct: 14 LHQLFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLIDP 73
Query: 252 KRQLFFRRHYPVASISYCGLDPEDSRCL 279
+ Q+ R +P+ + E+ R
Sbjct: 74 QTQVT-RLTFPLPCVVLYATHQENKRLF 100
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 68.5 bits (167), Expect = 4e-14
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Query: 168 LSLPDSEPSLPPDAVSPSITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFG 227
L + + + V YL V+ E G A+ L
Sbjct: 13 LGTENLYFQSMASRPHQWQADEDAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLKA 72
Query: 228 TKPLPHAAVVHFKVSSQGITLTDNKRQLFFRRHYPVASISYCGLDPEDSRC 278
+ VS+ G+ + D+K + + +S+C D +
Sbjct: 73 MG--RKSVKSVLWVSADGLRVVDDKTKDLLVDQ-TIEKVSFCAPDRNLDKA 120
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 63.0 bits (153), Expect = 2e-12
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 195 QGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTK--PLPHAAVVHFKVSSQGITLTDNK 252
+G ++ YL E G + A+ + T V KVS +GI LTD+
Sbjct: 2 EGMVFSLKYLGMTLVERPKGEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDSL 61
Query: 253 RQLFFRRHYPVASISYCGLDPEDSRC 278
+ + ISYC D +
Sbjct: 62 TSQL-IENVSIYRISYCTADKMHDKV 86
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 58.9 bits (142), Expect = 1e-10
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 176 SLPPDAVSPSITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSL---FGTKPLP 232
+ P + V +L S++ +S P V + + +
Sbjct: 8 HHHSSGLVPRGSHMTEDSILHQLFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIF 67
Query: 233 HAAVVHFKVSSQGITLTDNKRQLFFRRHYPVASISYCGLDPEDSR 277
H V+ + L D + Q R +P+ + E+ R
Sbjct: 68 RMTESHLLVTCDCLKLIDPQTQ-VTRLTFPLPCVVLYATHQENKR 111
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 56.1 bits (135), Expect = 8e-10
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 187 TSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLP-----HAAVVHFKV 241
G + D G + ++ L G H + +
Sbjct: 7 YLLARFKGDGVKYKAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNI 66
Query: 242 SSQGITLTDNKRQLFFRRHYPVASISYCGLDPEDSRCL 279
S GI + D K + H PV IS+ D D+R
Sbjct: 67 SLSGIKIIDEKTGVIEHEH-PVNKISFIARDVTDNRAF 103
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 49.5 bits (118), Expect = 1e-07
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 12/112 (10%)
Query: 200 NVLYLVSVDTESLTGPQAVTRAINSLFGTKPLP-----HAAVVHFKVSSQGITLTDNKRQ 254
+ + + G + ++ L G H + +S GI + D K
Sbjct: 21 KAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTG 80
Query: 255 LFFRRHYPVASISYCGLDPEDSRCLTRPWCISKSHCSCDKNFKSCLKSTKSA 306
H V ISY D D R +H +K+ ++A
Sbjct: 81 ALQHHH-AVHEISYIAKDITDHRAFGYVCGKEGNHRFV------AIKTAQAA 125
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB
domain, chimera protein, protein transport; HET: IPA
GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 45.9 bits (108), Expect = 2e-06
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 193 LAQGAACNVLYLVSVDTESLTGPQAVTR------AINSLFGTKPLPHAAVVHFKVSSQGI 246
L G YL S S P R A++ + V +S+Q I
Sbjct: 5 LIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRI 64
Query: 247 TLTDNKRQLFFRRHYPVASISYCGLDPEDSRCLTR 281
+ + Q H P+ +ISY + R
Sbjct: 65 KVLNADTQEPMMDH-PLRTISYIADIGNIVVLMAR 98
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member
2; phosphotyrosine-interaction domain, amyloid disease,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.2
PDB: 2roz_B
Length = 136
Score = 45.3 bits (107), Expect = 3e-06
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 200 NVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQLFFRR 259
V YL + + G + AI +L + V+ V+ +T+ K +
Sbjct: 19 RVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLV 78
Query: 260 HYPVASISYCGLD 272
V +S+ G+
Sbjct: 79 ECRVRFLSFMGVG 91
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 45.2 bits (107), Expect = 3e-06
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 200 NVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQLFFRR 259
V YL +V G + A+ S+ + H V+ +T+ + +
Sbjct: 11 QVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGE 70
Query: 260 HYPVASISYCGLD 272
V +S+ +
Sbjct: 71 C-RVRFLSFLAVG 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 3e-06
Identities = 52/321 (16%), Positives = 86/321 (26%), Gaps = 87/321 (27%)
Query: 1 METVTKEVGEPFLIDMTKMLQLMGQCQTLRAIPKSKFAVRSVKDKRPNPQITQTTSAYPL 60
M + E +P ++ + Q + K +V R P + + L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----YNVS--RLQPYLKLRQALLEL 147
Query: 61 --FNGII----PGT-KWCGTGDIADTY-----FDLGSE-IKLDKCCRTHD-------LC- 99
++ G+ K D+ +Y D + L C L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 100 ---PSKIRAHTNRYNITNDSMYTNNELVRHFLIEPTPRG------VR----LK----GC- 141
P+ + NI EL R +P V+ C
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 142 -----SNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEPSLPPDAVSPSITSAQLLLAQG 196
+ V LSA H +SL +L PD LLL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTH----------ISLDHHSMTLTPDE------VKSLLL--- 308
Query: 197 AACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQLF 256
YL + L + +T N P + + G+ DN + +
Sbjct: 309 -----KYL-DCRPQDLP-REVLT--TN------PRRLSIIAESI--RDGLATWDNWKHVN 351
Query: 257 FRRHYPVASISYCGLDPEDSR 277
+ + S L+P + R
Sbjct: 352 CDKLTTIIESSLNVLEPAEYR 372
Score = 31.4 bits (70), Expect = 0.56
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 37/100 (37%)
Query: 67 GTKWCGTGDIADTYFDLGSEIKLDKCCRTHDLCPSKIRAHTNRYNIT-NDSMYTNNELVR 125
T W +G I +T L + + I ND Y LV
Sbjct: 511 STAWNASGSILNTLQQL-----------------KFYKPY-----ICDNDPKYE--RLVN 546
Query: 126 ---HFLIEPTPRGVRLKGCSNEPVFSSL--SALVYQHSVL 160
FL + + K ++ L AL+ + +
Sbjct: 547 AILDFLPKIEENLICSK-------YTDLLRIALMAEDEAI 579
Score = 31.0 bits (69), Expect = 0.61
Identities = 18/165 (10%), Positives = 42/165 (25%), Gaps = 42/165 (25%)
Query: 179 PDAVSPSITSAQL--LLAQGAACNVLYLVSVDTESLTGPQAVTRAINSL------FGTKP 230
D ++ ++ ++ A + + T + V + + + F P
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 231 L------PHAAVVHFKVSSQGITLTDNK--RQLFFRRHYPVASISYC--GLDPEDSRCLT 280
+ P + + + DN+ + R P + L P + +
Sbjct: 98 IKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI- 155
Query: 281 RPWCISKSH----CSCDKNFKSCLKSTKSAAAD--VMGEFYFNIF 319
K+ + V + F IF
Sbjct: 156 --------DGVLGSG-----KTWV--ALDVCLSYKVQCKMDFKIF 185
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 45.2 bits (106), Expect = 7e-06
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 200 NVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQLFFRR 259
V YL + + G + AI +L + V+ V+ +T+ K +
Sbjct: 19 RVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLV 78
Query: 260 HYPVASISYCGLD 272
V +S+ G+
Sbjct: 79 ECRVRFLSFMGVG 91
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 44.3 bits (104), Expect = 1e-05
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 200 NVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQLFFRR 259
V YL + + G + AI +L + V+ V+ +T+ K +
Sbjct: 65 RVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLV 124
Query: 260 HYPVASISYCGLD 272
V +S+ G+
Sbjct: 125 ECRVRFLSFMGVG 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 50/301 (16%), Positives = 90/301 (29%), Gaps = 102/301 (33%)
Query: 23 MGQCQTLRAIPKSKFAVRSVKDK-----------------RPNPQITQTTSAYPLFNGII 65
MG L SK A + V ++ NP + F G
Sbjct: 1631 MGM--DLYK--TSK-AAQDVWNRADNHFKDTYGFSILDIVINNP-----VNLTIHFGG-- 1678
Query: 66 PGTKWCGTGDIADTYFDLGSEIKLDKCCRTHDLCPSKIRAHTNRYNITNDSMYTNNELVR 125
K I + Y + E +D +T + I H+ Y ++ L
Sbjct: 1679 EKGK-----RIRENYSAMIFETIVDGKLKTEKIFKE-INEHSTSYTFRSE----KGLL-- 1726
Query: 126 HFLIEPT-P----------RGVRLKGCSNEP-VFS--SL---SALVYQHSVLPLALPCRL 168
+ T P ++ KG F+ SL +AL V+ + +
Sbjct: 1727 -SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 169 ----------SLPDSEP--------SLPPDAVSPSITSAQLLL-------AQGAAC---- 199
++P E ++ P V+ S + L G
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 200 -NV---LYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQL 255
NV Y+ + D +L VT +N + + + ++ + S ++L + + L
Sbjct: 1846 YNVENQQYVAAGDLRAL---DTVTNVLNFI-KLQKID---IIELQKS---LSLEEVEGHL 1895
Query: 256 F 256
F
Sbjct: 1896 F 1896
Score = 42.3 bits (99), Expect = 2e-04
Identities = 50/260 (19%), Positives = 76/260 (29%), Gaps = 90/260 (34%)
Query: 93 CRTHDLCPSKIRAH-----TNRYNI----------TNDSMYTNNELVRH--FLIEPTPRG 135
+ P ++R++ + + + +S + + F I G
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-----G 307
Query: 136 VRLKGCSNE--PVFSSLSALVYQHSV-----LP---LALPCRLSLPDSEP-------SLP 178
VR E P +SL + + S+ +P L++ L+ + LP
Sbjct: 308 VR----CYEAYPN-TSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLP 361
Query: 179 PD-AVSPSITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGT--------- 228
V S L GA V VS +SL G R + G
Sbjct: 362 AGKQVEIS-------LVNGAKNLV---VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 229 -KP------LPHAAVVHFKVSS------QGITLTDNKRQLFFRRHY---PVASISYCGLD 272
K LP A+ H S I K + F PV Y D
Sbjct: 412 RKLKFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIPV----YDTFD 464
Query: 273 PEDSRCLTRPWCISKSHCSC 292
D R L+ IS+ C
Sbjct: 465 GSDLRVLSGS--ISERIVDC 482
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 39.9 bits (93), Expect = 2e-04
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 200 NVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHFKVSSQGITLTDNKRQLFFRR 259
LY+ ++ G + AI +L VS +T + +
Sbjct: 19 EALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEE 78
Query: 260 H----YPVASISYCGLDPEDSRC 278
PV +++ G+ +
Sbjct: 79 EPLWQCPVRLVTFIGVGRDPHTF 101
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 38.1 bits (89), Expect = 6e-04
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEP--VFSSLSALVYQHSVLPLALPCRLSLPDSEPSL 177
V+H+LI P+ RL ++ F+ L LV H + LPC L + +L
Sbjct: 62 VKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 117
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 116 SMYTNNELVRHFLIEPTPRG---VRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ N V + I P V+ + F+ L L+ + + L L P
Sbjct: 50 CVLYRNC-VYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYP 107
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 36.5 bits (85), Expect = 0.002
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 121 NELVRHFLIEPTPRGVRLKGCSNEP--VFSSLSALVYQHSVLPLALPCRLSLP 171
++ +++F I P + ++ FS L LV + + LPC+L
Sbjct: 50 HQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPCKLKHH 102
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEPSLPPD 180
V+HF + G K F+SL+ LV H ++ ++ L D E
Sbjct: 53 VQHFKVLRDGAG---KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQP 106
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 36.2 bits (84), Expect = 0.003
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLA-LPCRLSLPDSEPSLPPDA 181
HF+++ G + +SL ALV H P+ L+ P + P +
Sbjct: 61 CCHFMVKLLDDG-TFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSS 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.004
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 164 LPCRLSL--PDSEPSLPPDAVSPSI 186
L L L DS P+L A+ ++
Sbjct: 25 LQASLKLYADDSAPAL---AIKATM 46
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 35.8 bits (83), Expect = 0.004
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 120 NNELVRHFLIEPTPRGVRLK--GCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ + ++HF I P + F+ L LV + + LPC+L
Sbjct: 70 HGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPCKLKHY 123
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 37.3 bits (86), Expect = 0.005
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLA-----LPCRLSL 170
S+ + + +H +I T G ++ SL LV + L L L+
Sbjct: 232 SVVVDGD-TKHCVIYRTATGFGF--AEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAH 288
Query: 171 PDSEPSLPPDAVS 183
P P P + +
Sbjct: 289 PVRAPGPGPPSAA 301
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 35.4 bits (82), Expect = 0.005
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 124 VRHFLIEPTPRG---VRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ + + T G ++ F + L+ + L P
Sbjct: 51 IYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYP 101
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 35.4 bits (82), Expect = 0.005
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 119 TNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ N ++H+ I+ T + + + VF S+ L+ H L RL P
Sbjct: 56 SENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYP 108
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 35.5 bits (82), Expect = 0.006
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 124 VRHFLIEPTPRG---VRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEPSLPPD 180
+ + + T G ++ F + L+ + L P + S
Sbjct: 51 IYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARS 110
Query: 181 AVSPS 185
+
Sbjct: 111 TQGTT 115
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 36.8 bits (85), Expect = 0.007
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ + V H+ I+ G F +L LV +S L L++P
Sbjct: 198 CLLHEGK-VLHYRIDKDKTGKLS--IPEGKKFDTLWQLVEHYSYKADGLLRVLTVP 250
Score = 32.6 bits (74), Expect = 0.14
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEPSLPPD 180
H+ IE G + +S + L + HS L C L P + P
Sbjct: 53 AHHYTIERELNGTY--AIAGGRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQP 107
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 34.6 bits (80), Expect = 0.008
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 124 VRHFLIEPTPRG---VRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
V + I G + + +F +L LV ++ L LS P
Sbjct: 50 VYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSKYGKPGQGLVVHLSNP 100
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 34.5 bits (80), Expect = 0.008
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
S+ VRH+ I G RL + F SL LV H L+ RL+ P
Sbjct: 43 SVRDTQA-VRHYKIWRRAGG-RL-HLNEAVSFLSLPELVNYHRAQSLSHGLRLAAP 95
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 35.0 bits (81), Expect = 0.008
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 115 DSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ + ++H+ I+ G + + F S+ L++ H L RL P
Sbjct: 59 GARRSTEAAIKHYQIKKNDSG-QW-YVAERHAFQSIPELIWYHQHNAAGLMTRLRYP 113
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 35.6 bits (81), Expect = 0.009
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 19/107 (17%)
Query: 193 LAQGAACNVLYLVSVDTESLTGPQAVTR------AINSLFGTKPLPHAAV---------- 236
L G YL S S P R A++ + + L +
Sbjct: 4 LIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPM 63
Query: 237 --VHFKVSSQGITLTDNKRQLFFRRHYPVASISYCGLDPEDSRCLTR 281
V + +Q I + + Q H P+ +ISY + R
Sbjct: 64 TEVDLFILTQRIKVLNADTQETMMDH-PLRTISYIADIGNIVVLMAR 109
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 34.6 bits (80), Expect = 0.010
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ T E+V+H+ I G S F +L ALV +S L +L+LP
Sbjct: 56 DITTQGEVVKHYKIRSLDNG-GYY-ISPRITFPTLQALVQHYSKKGDGLCQKLTLP 109
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 34.6 bits (80), Expect = 0.010
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKG-CSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
S+ V+H+ I G + VFS+L+ V ++ L +L P
Sbjct: 57 SVLDEGV-VKHYRIRRLDEG---GFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKP 109
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 34.2 bits (79), Expect = 0.012
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALV--YQHSVLPL----ALPCRLS 169
S+ N V H I+ T L G F++L+ LV Y L L
Sbjct: 47 SVRRNGA-VTHIKIQNTGDYYDLYG---GEKFATLAELVQYYMEHHGQLKEKNGDVIELK 102
Query: 170 LP 171
P
Sbjct: 103 YP 104
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 34.1 bits (79), Expect = 0.014
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ ++ + V H+ I + + E F +L LV ++ L RL P
Sbjct: 47 CVSSDGK-VEHYRIMYHASKLSI---DEEVYFENLMQLVEHYTSDADGLCTRLIKP 98
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 35.6 bits (82), Expect = 0.015
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
S+ V H+LI G F +L LV + L L
Sbjct: 199 SLIYGKT-VYHYLISQDKAGKYC--IPEGTKFDTLWQLVEYLKLKADGLIYCLKEA 251
Score = 31.0 bits (70), Expect = 0.45
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEP 175
HF IE G + + L +S P LPC L P + P
Sbjct: 54 FHHFPIERQLNGTY--AIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRP 103
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 33.8 bits (78), Expect = 0.016
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
V+H+ + +L + F S+ L++ H + RL P
Sbjct: 63 VKHYHVHTNAEN-KL-YLAENYCFDSIPKLIHYHQHNSAGMITRLRHP 108
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 35.4 bits (82), Expect = 0.021
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 109 RYNITNDSMYT----NNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLAL 164
R + YT V H+ I + E F +L LV ++ L
Sbjct: 107 RESTNYPGDYTLCVSCEGKVEHYRIMYHASKLS---IDEEVYFENLMQLVEHYTTDADGL 163
Query: 165 PCRLSLPDSEPSLPPD 180
RL P
Sbjct: 164 CTRLIKPKVMEGTVAA 179
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 34.9 bits (80), Expect = 0.023
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
S + ++H ++ + V L F SL L+ + PL +L P
Sbjct: 161 SFRAEGK-IKHCRVQQEGQTVMLGN----SEFDSLVDLISYYEKHPLYRKMKLRYP 211
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 33.4 bits (77), Expect = 0.029
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLS--LPDS 173
TN ++ F I PTP + ++S+ ++ + + L +P
Sbjct: 56 YFRTNEN-IQRFKICPTPNN---QFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQ 111
Query: 174 EPSLPP 179
+ S P
Sbjct: 112 DQSGPS 117
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 33.4 bits (77), Expect = 0.029
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+ + V+H I R L F SL LV + L RL P
Sbjct: 58 TFRARGK-VKHCRINRDGRHFVL---GTSAYFESLVELVSYYEKHALYRKMRLRYP 109
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 33.0 bits (76), Expect = 0.029
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALV--YQHSVLPL---ALPCRLSL 170
S+ + E V+H +I T G ++SSL LV YQH+ L +L L+
Sbjct: 48 SVVVDGE-VKHCVINKTATGYGF--AEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAY 104
Query: 171 P 171
P
Sbjct: 105 P 105
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 32.6 bits (75), Expect = 0.034
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 115 DSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
D E+V+H+ I G S F L LV ++ L RLS P
Sbjct: 48 DFDQNQGEVVKHYKIRNLDNG--GFYISPRITFPGLHELVRHYTNASDGLCTRLSRP 102
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 33.0 bits (76), Expect = 0.036
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKG-CSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
S+ V H+ I T G K + E FS+L+ LV+ HS + L L P
Sbjct: 55 SLRYEGR-VYHYRINTTADG---KVYVTAESRFSTLAELVHHHSTVADGLVTTLHYP 107
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 32.5 bits (75), Expect = 0.037
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
V H+ + + + F +L +V +S A+ +L P
Sbjct: 51 VIHYRVLHRDGHLTI---DEAVFFCNLMDMVEHYSKDKGAICTKLVRP 95
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 34.7 bits (80), Expect = 0.039
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 115 DSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSE 174
D V+H+ I G ++ F+SL LV +S L RL+
Sbjct: 109 DFDNAKGLNVKHYKIRKLDSG--GFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT 166
Query: 175 PSLPPDAVSP 184
++
Sbjct: 167 SKPQTQGLAK 176
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 32.6 bits (75), Expect = 0.042
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
V+H+ I G + F +L LV +S L RL +P
Sbjct: 58 VKHYKIRKLDNG-GY-YITTRAQFETLQQLVQHYSERAAGLSSRLVVP 103
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 32.6 bits (75), Expect = 0.051
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEP 175
S+ V H+ I G +L S+E F++L+ LV+ HS + L L P +
Sbjct: 44 SLRYEGR-VYHYRINTASDG-KLY-VSSESRFNTLAELVHHHSTVADGLITTLHYPAPKR 100
Query: 176 SLPP 179
+ P
Sbjct: 101 NKPT 104
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 32.7 bits (75), Expect = 0.054
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
+RH+++ TP+ + + +FS++ L+ H L RL P
Sbjct: 63 IRHYVVCSTPQS--QYYLAEKHLFSTIPELINYHQHNSAGLISRLKYP 108
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 34.2 bits (78), Expect = 0.062
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 109 RYNITNDSMYT----NNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLAL 164
R + + Y ++ HF IE G + + L +S P L
Sbjct: 37 RQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY--AIAGGKAHCGPAELCEFYSRDPDGL 94
Query: 165 PCRLSLP 171
PC L P
Sbjct: 95 PCNLRKP 101
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.078
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 115 DSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLP 171
D E+V+H+ I G S F L LV ++ L RLS P
Sbjct: 118 DFDQNQGEVVKHYKIRNLDNGGFY--ISPRITFPGLHELVRHYTNASDGLCTRLSRP 172
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 33.6 bits (77), Expect = 0.087
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 109 RYNITNDSMYT----NNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLAL 164
R + ++ + V H+ I G S+E F++L+ LV+ HS + L
Sbjct: 132 RESESSPGQRSISLRYEGRVYHYRINTASDGKL--YVSSESRFNTLAELVHHHSTVADGL 189
Query: 165 PCRLSLPDSEPSLPPDAVSP 184
L P + + P
Sbjct: 190 ITTLHYPAPKRNKPTIYGVS 209
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 33.7 bits (77), Expect = 0.094
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 115 DSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSE 174
D V+H+ I G ++ F+SL LV +S L RL+
Sbjct: 192 DFDNAKGLNVKHYKIRKLDSG--GFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT 249
Query: 175 PSLPPDAVSP 184
++
Sbjct: 250 SKPQTQGLAK 259
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPD 172
V+HF + G K F+SL+ LV H ++ ++ L D
Sbjct: 50 VQHFKVLRDGAG---KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRD 95
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 33.1 bits (76), Expect = 0.12
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 115 DSMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSE 174
D + V+H+ I G S FS+L LV + L +LS+P
Sbjct: 114 DYDPRQGDTVKHYKIRTLDNGGFY--ISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMS 171
Query: 175 PSLPP 179
Sbjct: 172 SKPQK 176
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 31.7 bits (71), Expect = 0.22
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 217 AVTRAINSLFGTKPLPHAAV-VHFKVSSQGITLTDNKRQLFFRRHYPVASISYCGLDPED 275
+R ++S+ G L A + + VS+ + L + H + SIS+ D
Sbjct: 101 PCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANH-HMQSISFASGGDPD 159
Query: 276 SRCLTRPWCISKSHCSCDKNFKSCLKSTKSAAADVM 311
+ ++K ++ L+ + A DV+
Sbjct: 160 TAEYVAY--VAKDP--VNQRACHILECPEGLAQDVI 191
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 30.0 bits (68), Expect = 0.43
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALV--YQHSVLPL----ALPCRLSLP 171
+H + G + F S+ ++ ++ +PL + L
Sbjct: 58 AKHLRLSLNAAG---QCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSY 108
>3d59_A Platelet-activating factor acetylhydrolase; secreted protein,
alpha/beta-hydrolase-fold, LDL-bound, lipoprotein
associated phospholipase A2, LP-PLA2; 1.50A {Homo
sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*
Length = 383
Score = 31.4 bits (70), Expect = 0.46
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 239 FKVSSQGITLTDNKRQLFFRRHYPVASISYCGLDPEDSRCLTRPWCISKSHCSCDKNFKS 298
+ V + + F R +YP +D+ L W +K + F
Sbjct: 17 YSVGCTDLMFDHTNKGTFLRLYYPS----------QDNDRLDTLWIPNKEYFWGLSKF-- 64
Query: 299 CLKSTKSAAADVMGEFYFNIFRVPCIIDTPSGKKFKFPGV 338
L + + F P ++P K+P V
Sbjct: 65 -LGTHWLMGNIL--RLLFGSMTTPANWNSPLRPGEKYPLV 101
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 29.9 bits (67), Expect = 0.62
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 124 VRHFLIEPTPRGVRL----KGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEPSLPP 179
++ I+ L + P F + LV+ + P L + +P
Sbjct: 69 TKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPE 128
Query: 180 DAVSPSI 186
+ ++
Sbjct: 129 QPPAQAL 135
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 116 SMYTNNELVRHFLIEPTPRGVRLKGCSNEPVFSSLSALVYQHSVLPLALPCRLSLPDSEP 175
S+ + RHF+I+ R F S+ L+ L + +
Sbjct: 49 SVLWDGL-PRHFIIQSLDNLYR----LEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRA 103
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
{Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
Length = 130
Score = 28.7 bits (63), Expect = 1.4
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 272 DPEDSRCLTRPWCISKS-----HCSCDKNFKSCLKSTKSA 306
D D+ C+ C+ + C++N SC+ A
Sbjct: 54 DALDACCMVHDHCVDTHNDDYLNTMCNENLLSCIDRVSGA 93
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 27.9 bits (62), Expect = 2.8
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 116 SMYTNNELVRHFLIEPTPRG---VRLKGCSNEPVFSSLSALV--YQHSVLPL-------A 163
+ N V + + K + E F S+ +V +QH+ L L
Sbjct: 65 VAFFNKR-VYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTK 123
Query: 164 LPCRLSLPDSEPSLPPDA 181
RL S P
Sbjct: 124 DSTRLKYAVKVSSGPSSG 141
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.8
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 180 DAVSPSITSAQLLLAQGAACNVLYLVSVDTESLTGPQAVTRAINSLFGTKPLPHAAVVHF 239
D + A L ++ T + + + IN + V
Sbjct: 1317 DPRIAPLRGA-LATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPV-- 1373
Query: 240 KVSSQ 244
Q
Sbjct: 1374 IGVFQ 1378
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 27.8 bits (62), Expect = 3.0
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALV---YQHSVLPLALPCRLSLPDSEP 175
H IE + + +S+ L+ S R LP S
Sbjct: 70 TLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSAT 124
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding,
glutathione biosynthesis, nucleotide-binding,
phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces
cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Length = 692
Score = 28.9 bits (64), Expect = 3.2
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 12 FLIDMTKMLQLMGQCQTLRAIPKSKFAVRSVKDKRPNPQITQTTSAYPLFNGIIPGTKWC 71
I M+K+ + M AI KF + + + + + N +
Sbjct: 506 AYIHMSKVWENMKIAHHRDAILFEKFHWKKSFRNDTDVETEDYSISEIFHNP--ENGIFP 563
Query: 72 GTGDIADTYFD-LGSEIKLDKCCRTH 96
+ + K K H
Sbjct: 564 QFVTPILCQKGFVTKDWKELKHSSKH 589
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 26.5 bits (59), Expect = 4.9
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 124 VRHFLIEPTPRGVRLKGCSNEPVFSSLSALV--YQHSVLPL---ALPCRLSLP 171
+H L+ VR K F S+S L+ + + LP+ L P
Sbjct: 51 PKHLLLVDPEGVVRTKD----HRFESVSHLISYHMDNHLPIISAGSELCLQQP 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.419
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,948,726
Number of extensions: 276257
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 110
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)