BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10619
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/172 (66%), Positives = 135/172 (78%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HV++ADEAV IGPP A QSYI +DK++ AIR T A AVHPGYGFLSEN+ F L+ EGV
Sbjct: 41 HVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGV 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
+F+GP I MGDK+ SKK+A+EA V+ +PG+ G+I DAD V+I+ IGYPVMIKAS
Sbjct: 101 IFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKAS 160
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGGKGMRIA NDQEA EGF+ S EAA SFGDDRI +EKF+ PRHIEIQ
Sbjct: 161 AGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 179 HIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQ 238
I +G K ++T ++ E A+L+P K D +K+L PMPGL+ V+ +VG ++ EGQ
Sbjct: 579 RIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQ 638
Query: 239 ELCVV 243
LC +
Sbjct: 639 ALCTI 643
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 122/173 (70%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
H+ LADE+VCIGP A QSY+ + II A T A A+HPGYGFL+ENA F +++ G
Sbjct: 41 HLSLADESVCIGPAPATQSYLQIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGF 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNG-IIRDADHCVEIARDIGYPVMIKA 130
F+GPTAE IR MGDK+ +K K AGV +PG +G + D + + IAR++GYPV+IKA
Sbjct: 101 TFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKA 160
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+ GGGG+GMR+ ++ E I+ KL+ EA A+FG+ + +EKF+ NPRH+E+Q
Sbjct: 161 AGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQ 213
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 43 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1069 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1108
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 43 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1069 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1108
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 43 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1069 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1108
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 66 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1092 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1131
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 66 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1092 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1131
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 66 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1092 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1131
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 66 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 125
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 126 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 186 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 238
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1092 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1131
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 126/174 (72%), Gaps = 3/174 (1%)
Query: 11 RHVKLADEAVCIGP-PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEE 69
RHVKLADEA IG P+ +Y+N +II+ + ADA+HPGYGFL+ENA F +E
Sbjct: 40 RHVKLADEAYMIGTDPL--DTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEA 97
Query: 70 GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIK 129
G+ FIGP + I MGDK SK++ K+AGV ++PG +G+++ + +AR+IGYPV++K
Sbjct: 98 GITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLK 157
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
A+AGGGG+G+RI N++E ++ ++ +S+EA +FG +L+EKFI+NP+HIE Q
Sbjct: 158 ATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQ 211
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
Query: 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENAS 61
++ DP + +HV AD +V + AA++Y+++DKII+A ++T A A+ PGYGFLSENA
Sbjct: 60 VYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENAD 119
Query: 62 FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121
F R +E +VF+GP+ + IR +G K ++++A+ A V ++PG +G+I+DA E+A+
Sbjct: 120 FSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPG-SGLIKDAKEAKEVAKK 178
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
+ YPVM+K++AGGGG G++ +++ + F+ + + FGD + +E+F+ N RH+E
Sbjct: 179 LEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVE 238
Query: 182 IQ 183
IQ
Sbjct: 239 IQ 240
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 61 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 120
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 121 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 180
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 181 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 234
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 40 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 60 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 119
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 120 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 179
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 180 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 233
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 43 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 216
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 43 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 216
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 40 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 43 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 216
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 40 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 60 KHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 119
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIK 129
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IK
Sbjct: 120 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 179
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AS GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 180 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 233
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 12 HVKLADEAVCIG---PPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
H ADEA +G P+ A Y++++ II+ + DA+HPGYGFLSEN F R +E
Sbjct: 45 HRYKADEAYLVGEGKKPIEA--YLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCRE 102
Query: 69 EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
EG++FIGP + GDK++++ A AG+ +IPG +G + + V A GYP++I
Sbjct: 103 EGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIII 162
Query: 129 KASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
KA+ GGGG+GMRI + E E F+ + EA A+FG D + VEK I+NP+HIE+Q
Sbjct: 163 KAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQ 217
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 123/183 (67%), Gaps = 2/183 (1%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
H ++ADEA C+GP ++ SY+N+ I+ T D VHPGYGFL+ENA F + +
Sbjct: 40 HTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQL 99
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP+ + I+ MG K +K +A V ++PG +G+++D +IA+ IGYPV+IKA+
Sbjct: 100 KFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKAT 159
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ--GTTYKF 189
AGGGGKG+R+A +++E GF+++ QEA +FG+ + +EKFI+N RHIEIQ G +Y
Sbjct: 160 AGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGN 219
Query: 190 LIQ 192
+I
Sbjct: 220 VIH 222
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 86/96 (89%)
Query: 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN 144
GDK+ESK LAK+A VN IPGF+G+++DA+ V IAR+IGYPVMIKASAGGGGKGMRIA +
Sbjct: 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHI 180
D+E +GF+LSSQEAA+SFGDDR+L+EKFI NPRHI
Sbjct: 67 DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 12 HVKLADEAVCIG--PPVAA-----QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS 64
H ADE+ +G P +A +SY+++D++I + + ADA+HPGYG LSE+ FV
Sbjct: 53 HRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVD 112
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
+ G++FIGP A+ +R +G+K+ ++ LA GV ++P + D ++A IGY
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
PVM+KAS GGGG+GMR+ ++ + + + +EA A+FG D + +EK ++ RH+E Q
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 12 HVKLADEAVCIG--PPVAA-----QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS 64
H ADE+ +G P +A +SY+++D++I + + ADA+HPGYG LSE+ FV
Sbjct: 53 HRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVD 112
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
+ G++FIGP A+ +R +G+K+ ++ LA GV ++P + D ++A IGY
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
PVM+KAS GGGG+GMR+ ++ + + + +EA A+FG D + +EK ++ RH+E Q
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 114/173 (65%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
RHV AD AV +G A SY+ D+II A + A A+HPGYGFLSENA F +E G
Sbjct: 46 RHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAG 105
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
++F+GP A I MG K +K L +EAGV ++PG++G +D + A IGYPV++KA
Sbjct: 106 LLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKA 165
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+AGGGGKGM++ + E E + +EA A+FGD R+LVEK++ PRH+EIQ
Sbjct: 166 AAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQ 218
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 118/183 (64%), Gaps = 6/183 (3%)
Query: 7 CVFQR------HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
CV+ ++K AD ++CIG +++SY+N+ II A ADA+ PGYGFLSEN
Sbjct: 34 CVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQ 93
Query: 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIAR 120
+FV + + FIGP+ E DK ++K++ + AGV +IPG +G + A+ ++A+
Sbjct: 94 NFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQVXQRAGVPVIPGSDGALAGAEAAKKLAK 153
Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHI 180
+IGYPV++KA+AGGGG+G R+ N+++ + + + EA +FGD EK+I+NPRHI
Sbjct: 154 EIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSAESEAXTAFGDGTXYXEKYIQNPRHI 213
Query: 181 EIQ 183
E+Q
Sbjct: 214 EVQ 216
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 30/198 (15%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + G+
Sbjct: 91 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGI 150
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
F+GP ++ + +GDK+ S +A+ AG+ +P
Sbjct: 151 AFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYE 210
Query: 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD 165
G ++D D ++ A ++GYPVMIKAS GGGGKG+R NN + F+ E S
Sbjct: 211 KGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS--- 267
Query: 166 DRILVEKFIKNPRHIEIQ 183
I V + K RH+E+Q
Sbjct: 268 -PIFVMRLAKQSRHLEVQ 284
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + GV
Sbjct: 106 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 165
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
F+GP +E + +GDK+ S +A+ V +P
Sbjct: 166 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 225
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
G ++D D +E A IG+P+MIKAS GGGGKG+R A E+ E F + ++ +
Sbjct: 226 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 281
Query: 165 DDRILVEKFIKNPRHIEIQ 183
I + K ++ RH+E+Q
Sbjct: 282 GSPIFLMKLAQHARHLEVQ 300
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + GV
Sbjct: 106 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 165
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
F+GP +E + +GDK+ S +A+ V +P
Sbjct: 166 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 225
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
G ++D D +E A IG+P+MIKAS GGGGKG+R A E+ E F + ++ +
Sbjct: 226 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 281
Query: 165 DDRILVEKFIKNPRHIEIQ 183
I + K ++ RH+E+Q
Sbjct: 282 GSPIFLMKLAQHARHLEVQ 300
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + GV
Sbjct: 90 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 149
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
F+GP +E + +GDK+ S +A+ V +P
Sbjct: 150 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 209
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
G ++D D +E A IG+P+MIKAS GGGGKG+R A E+ E F + ++ +
Sbjct: 210 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 265
Query: 165 DDRILVEKFIKNPRHIEIQ 183
I + K ++ RH+E+Q
Sbjct: 266 GSPIFLMKLAQHARHLEVQ 284
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + GV
Sbjct: 100 YIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGV 159
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-------------------------- 105
F+GP +E + +GDK+ S +A+ V +P
Sbjct: 160 AFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVY 219
Query: 106 -NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
G ++D D +E A IG+P+MIKAS GGGGKG+R A E+ E F + ++ +
Sbjct: 220 DKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKA----ESAEDFPILFRQVQSEIP 275
Query: 165 DDRILVEKFIKNPRHIEIQ 183
I + K ++ RH+E+Q
Sbjct: 276 GSPIFLMKLAQHARHLEVQ 294
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG- 70
++++AD+ + + +Y NVD I+D + DAV G+G SEN +L +
Sbjct: 97 YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 156
Query: 71 -VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC-------------- 115
V+FIGP +R +GDK+ S +A+ A V IP ++G D H
Sbjct: 157 KVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIP-WSGTGVDTVHVDEKTGLVSVDDDIY 215
Query: 116 -----------VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
++ A+ IG+PVMIKAS GGGGKG+R +++ I + ++ E S
Sbjct: 216 QKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS-- 273
Query: 165 DDRILVEKFIKNPRHIEIQ 183
I + K RH+E+Q
Sbjct: 274 --PIFIMKLAGRARHLEVQ 290
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG- 70
++++AD+ + + +Y NVD I+D + DAV G+G SEN +L +
Sbjct: 96 YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 155
Query: 71 -VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC-------------- 115
V+FIGP +R +GDK+ S +A+ A V IP ++G D H
Sbjct: 156 KVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIP-WSGTGVDTVHVDEKTGLVSVDDDIY 214
Query: 116 -----------VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164
++ A+ IG+PVMIKAS GGGGKG+R +++ I + ++ E S
Sbjct: 215 QKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS-- 272
Query: 165 DDRILVEKFIKNPRHIEIQ 183
I + K RH+E+Q
Sbjct: 273 --PIFIMKLAGRARHLEVQ 289
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
+G E GDK + K+ K+ VN F ++R+ + ++ PV++KA+
Sbjct: 96 LVGLNEEAAIXCGDKYKXKEAFKKYNVNTARHF--VVRNENELKNALENLKLPVIVKATD 153
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ 192
G KG+ IA ++EAI+GF E D +VE+FI+ Y+F Q
Sbjct: 154 LQGSKGIYIAKKEEEAIDGF----NETXNLTKRDYCIVEEFIEG----------YEFGAQ 199
Query: 193 TEKEFEYAK-LLPPKPKLDETKILHAPMP 220
F Y +L P DET H +P
Sbjct: 200 A---FVYKNDVLFVXPHGDETYXSHTAVP 225
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGK 137
+ I+ + D+L K+ K AG ++P + ++++ + +GYP ++K GG GK
Sbjct: 103 QAIQLLQDRLTEKETLKSAGTKVVPFIS--VKESTDIDKAIETLGYPFIVKTRFGGYDGK 160
Query: 138 GMRIANNDQEAIEGFKL 154
G + NN+++ EGFKL
Sbjct: 161 GQVLINNEKDLQEGFKL 177
>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
Length = 367
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53 YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA 112
+G L E+ S L+ + F+G DK +K+L ++AG+NI P F + R
Sbjct: 110 HGTLGEDGSLQGXLRVANLPFVGSDVLSSAACXDKDVAKRLLRDAGLNIAP-FITLTRTN 168
Query: 113 DHC---VEIARDIGYPVMIKASAGGGGKGM-RIANNDQEAIEGFKLSSQEAAASFG-DDR 167
H E+ +G P+ +K + G G+ ++AN Q Q A +F D +
Sbjct: 169 RHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQ--------YQQAVALAFEFDHK 220
Query: 168 ILVEKFIKNPRHIE 181
++VE+ IK R IE
Sbjct: 221 VVVEQGIKG-REIE 233
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 19 AVCIGPPVAAQSYIN------VDKIIDAIRQTRADAVHPGYGFLSE-NASF-VSR---LK 67
+ P +A +YI V KII+ + R DAV P G + N + + R L+
Sbjct: 53 TIMTDPEMADATYIEPIHWEVVRKIIE---KERPDAVLPTMGGQTALNCALELERQGVLE 109
Query: 68 EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVM 127
E GV IG TA+ I D+ K+ G+ +GI + + +A D+G+P +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 128 IKASAGGGGKGMRIANNDQE 147
I+ S GG G IA N +E
Sbjct: 168 IRPSFTMGGSGGGIAYNREE 187
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 66 LKEEGVVFIGPTAECIRGMGDK------LESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
L+ GV IG + + I D+ +E KL + A N + + VE A
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPA--------NATVTAIEMAVEKA 705
Query: 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH 179
++IGYP++++ S GG+ M I ++ + F Q A + D +L++ F+ +
Sbjct: 706 KEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF----QTAVSVSNDAPVLLDHFLDDAVE 761
Query: 180 IEI 182
+++
Sbjct: 762 VDV 764
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 19 AVCIGPPVAAQSYIN------VDKIIDAIRQTRADAVHPGYGFLSE-NASF-VSR---LK 67
+ P +A +YI V KII+ + R DAV P G + N + + R L+
Sbjct: 53 TIMTDPEMADATYIEPIHWEVVRKIIE---KERPDAVLPTMGGQTALNCALELERQGVLE 109
Query: 68 EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVM 127
E GV IG TA+ I D+ K+ G+ +GI + + +A D+G+P +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 128 IKASAGGGGKGMRIANNDQE 147
I+ S GG G IA N +E
Sbjct: 168 IRPSFTMGGSGGGIAYNREE 187
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 66 LKEEGVVFIGPTAECIRGMGDK------LESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
L+ GV IG + + I D+ +E KL + A N + + VE A
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPA--------NATVTAIEMAVEKA 705
Query: 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH 179
++IGYP++++ S GG+ M I ++ + F Q A + D +L++ F+ +
Sbjct: 706 KEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF----QTAVSVSNDAPVLLDHFLDDAVE 761
Query: 180 IEI 182
+++
Sbjct: 762 VDV 764
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 20 VCIGPPVAAQSYIN------VDKIIDAIRQTRADAVHPGYGFLSE-NASF-VSR---LKE 68
+ P +A +YI V KII+ + R DAV P G + N + + R L+E
Sbjct: 54 IMTDPEMADATYIEPIHWEVVRKIIE---KERPDAVLPTMGGQTALNCALELERQGVLEE 110
Query: 69 EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
GV IG TA+ I D+ K+ G+ +GI + + +A D+G+P +I
Sbjct: 111 FGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCII 168
Query: 129 KASAGGGGKGMRIANNDQE 147
+ S GG G IA N +E
Sbjct: 169 RPSFTMGGSGGGIAYNREE 187
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 66 LKEEGVVFIGPTAECIRGMGDK------LESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
L+ GV IG + + I D+ +E KL + A N + + VE A
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPA--------NATVTAIEMAVEKA 705
Query: 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH 179
++IGYP++++AS GG+ M I ++ + F Q A + D +L++ F+ +
Sbjct: 706 KEIGYPLVVRASYVLGGRAMEIVYDEADLRRYF----QTAVSVSNDAPVLLDHFLDDAVE 761
Query: 180 IEI 182
+++
Sbjct: 762 VDV 764
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53 YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA 112
+G L E+ S L+ + F+G DK +K+L ++AG+NI P F + R
Sbjct: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAP-FITLTRTN 165
Query: 113 DHC---VEIARDIGYPVMIKASAGGGGKGM-RIANNDQEAIEGFKLSSQEAAASFG-DDR 167
H E+ +G P+ +K + G G+ ++AN Q Q A +F D +
Sbjct: 166 RHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQ--------YQQAVALAFEFDHK 217
Query: 168 ILVEKFIKNPRHIE 181
++VE+ IK R IE
Sbjct: 218 VVVEQGIKG-REIE 230
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKK-LAKEAGVNIIPGFNGIIRDADHCVEIARD 121
V + G+ GPT + G K +K LA+ NI D + + R
Sbjct: 84 VDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARH---NIPSAEYQNFTDVEAALAYVRQ 140
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKFIKNPRH 179
G P++IKA GKG+ +A +EA ++ A +FGD RI+VE+F
Sbjct: 141 KGAPIVIKADGLAAGKGVIVAXTQEEAET--AVNDXLAGNAFGDAGHRIVVEEF------ 192
Query: 180 IEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKI-------------LHAPMPGLVKSV 226
+ G F++ + E +LP D ++ ++P P + V
Sbjct: 193 --LDGEEASFIVXVDGE----NVLPXATSQDHKRVGDGDTGPNTGGXGAYSPAPVVTDDV 246
Query: 227 NCKVGDQIM 235
+ +V DQ++
Sbjct: 247 HQRVXDQVI 255
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ +L +PMPG+V +V+ K GD + EGQE+CV+
Sbjct: 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVI 56
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
V ++ G+ GP E + G K +K K+ G I + D + E +
Sbjct: 79 VDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYG--IPTARYEVFTDFEKAKEYVEKV 136
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
G P+++KA GKG + ++AIE + +R+++E+F +E
Sbjct: 137 GAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEF------LEG 190
Query: 183 QGTTYKFLIQTEKEFEYAKLLPPKPKLDETK-------ILHAPMPGLVKSVNCKVGDQIM 235
+ +Y +I ++ K LDE K ++P P + + V ++ ++I+
Sbjct: 191 EEASYIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIV 250
Query: 236 E 236
E
Sbjct: 251 E 251
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 48 AVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNG 107
A+H YG E+ + L+ G+ + G DK SKK+ + G+ P +
Sbjct: 62 ALHGKYG---EDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIET-PDWIE 117
Query: 108 IIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR 167
+ + D + +G+P+++K ++GG G++I + E I S E + D
Sbjct: 118 LTKXEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELI-----SXLETVFEW-DSE 171
Query: 168 ILVEKFIK 175
+++EK+IK
Sbjct: 172 VVIEKYIK 179
>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
Length = 452
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 60 ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
A V L+ GV GPTAE + K +K+ G+ + + + C I
Sbjct: 102 AGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQ-WKAFTKPEEACSFIL 160
Query: 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
+++KAS GKG+ +A + +EA + + QE A + I++E+ +
Sbjct: 161 SADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELL 215
>pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
Length = 367
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 47 DAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN 106
+ VH G G E+ S L+ + FIGP E +K +K AK+ G+ +
Sbjct: 113 NLVHGGDG---EDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVL 169
Query: 107 GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD 166
++ + +++ + +P ++K S G G+ + ++E I ++A + +
Sbjct: 170 LNEKNRANALDLM-NFNFPFIVKPSNAGSSLGVNVVKEEKELIYAL-----DSAFEYSKE 223
Query: 167 RILVEKFIKNPRHIEIQGTTYK 188
+L+E FI+ + + G K
Sbjct: 224 -VLIEPFIQGVKEYNLAGCKIK 244
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 58 ENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE 117
EN + + EG + + P A+ + D+L K + GV P F+ + D E
Sbjct: 68 ENVPVEAARRLEGRLPLYPPAKALEVAQDRLREKTFFQGLGVPTPP-FHPVDGPED-LEE 125
Query: 118 IARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176
+ +G P ++K GG GKG + ++EA+E K + G +++E F+
Sbjct: 126 GLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALK--------ALGGRGLILEGFVPF 177
Query: 177 PRHIEI 182
R + +
Sbjct: 178 DREVSL 183
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 57 SENASFVSRLKEE--GVVFIGPTAECIRGMGDKLESKKL---AKEAGVNIIPGFNGIIRD 111
S++A VS K+ G+ +GP I G+ D+ E L II G +D
Sbjct: 49 SDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKD 108
Query: 112 A-----------------DHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
D ++ G P++IKA GKG+ +A ++EAI
Sbjct: 109 LXKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAXTEEEAI 163
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCV-EIARDIG 123
+L+EEG+ + P A + ++ ++LA E +P D++ E DIG
Sbjct: 92 QLEEEGLNVV-PCARATKLTMNREGIRRLAAEE--LQLPTSTYRFADSESLFREAVADIG 148
Query: 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
YP ++K GKG + ++ + +K + Q A G R++VE +K
Sbjct: 149 YPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAG--RVIVEGVVK 198
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
E DIGYP ++K GKG + ++ + +K + Q A G R++VE +K
Sbjct: 143 EAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAG--RVIVEGVVK 199
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 57 SENASFVSRLKEE--GVVFIGPTAECIRGMGDKLESKKL---AKEAGVNIIPGFNGIIRD 111
S++A VS K+ G+ +GP I G+ D+ E L II G +D
Sbjct: 49 SDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKD 108
Query: 112 A-----------------DHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
D ++ G P++IKA GKG+ +A ++EAI
Sbjct: 109 LMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAI 163
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
Length = 380
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 14 KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVF 73
++ADE + G + + ++I D ++ + Y + + +L EG
Sbjct: 40 QVADEQIVAG-------FFDSERIEDLVKGSDVTT----YDLEHIDVQTLKKLYNEGYK- 87
Query: 74 IGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAG 133
I P+ + + DK K+ K+ G+ + P + +++D + V R+ G+PV+ KA G
Sbjct: 88 IHPSPYTLEIIQDKFVQKEFLKKNGIPV-PEYK-LVKDLESDV---REFGFPVVQKARKG 142
Query: 134 G-GGKGMRIANNDQE 147
G G+G+ I N+++
Sbjct: 143 GYDGRGVFIIKNEKD 157
>pdb|1NZA|A Chain A, Divalent Cation Tolerance Protein (Cut A1) From Thermus
Thermophilus Hb8
pdb|1V6H|A Chain A, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
pdb|1V6H|B Chain B, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
pdb|1V6H|C Chain C, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
Length = 103
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 68 EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE 117
EE V+ P+ E R + L ++LA A VNI+PG I R VE
Sbjct: 2 EEVVLITVPSEEVARTIAKALVEERLA--ACVNIVPGLTSIYRWQGEVVE 49
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 71 VVFIGPTAECIRGMGDKLES---KKLAKEAGVNIIPGFNGIIRD--ADHCVEIA------ 119
+ +GP A ++G+ D + K AG + G +D A H + A
Sbjct: 69 LTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFT 128
Query: 120 ---------RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRI 168
R+ G P++IKA GKG+ +A +EA + A +FGD RI
Sbjct: 129 EVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAA--VHDMLAGNAFGDAGHRI 186
Query: 169 LVEKFI 174
++E+F+
Sbjct: 187 VIEEFL 192
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVEIARD-IGYP 125
V ++G DKL K+L + G+ +P + + + + + +++ D + YP
Sbjct: 114 VPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYP 173
Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
V +K + G G+ NN+ E EG K +F DR LV + N R IE+
Sbjct: 174 VFVKPANLGSSVGISKCNNEAELKEGIK-------EAFQFDRKLVIEQGVNAREIEV 223
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVEIARD-IGYP 125
V ++G DKL K+L + G+ +P + + + + + +++ D + YP
Sbjct: 114 VPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYP 173
Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
V +K + G G+ NN+ E EG K +F DR LV + N R IE+
Sbjct: 174 VFVKPANLGSSVGISKCNNEAELKEGIK-------EAFQFDRKLVIEQGVNAREIEV 223
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVEIARD-IGYP 125
V ++G DKL K+L + G+ +P + + + + + +++ D + YP
Sbjct: 114 VPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYP 173
Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
V +K + G G+ NN+ E EG K +F DR LV + N R IE+
Sbjct: 174 VFVKPANLGSSVGISKCNNEAELKEGIK-------EAFQFDRKLVIEQGVNAREIEV 223
>pdb|1D4O|A Chain A, Crystal Structure Of Transhydrogenase Domain Iii At 1.2
Angstroms Resolution
Length = 184
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 28 AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF-----VSRLKEEG 70
+ IN+D ID IR+ + + PGYG + A + V L E+G
Sbjct: 6 THTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQG 53
>pdb|1DJL|A Chain A, The Crystal Structure Of Human Transhydrogenase Domain
Iii With Bound Nadp
pdb|1DJL|B Chain B, The Crystal Structure Of Human Transhydrogenase Domain
Iii With Bound Nadp
pdb|1PT9|A Chain A, Crystal Structure Analysis Of The Diii Component Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
pdb|1PT9|B Chain B, Crystal Structure Analysis Of The Diii Component Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
pdb|1U31|A Chain A, Recombinant Human Heart Transhydrogenase Diii Bound With
Nadph
pdb|1U31|B Chain B, Recombinant Human Heart Transhydrogenase Diii Bound With
Nadph
Length = 207
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 28 AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF-----VSRLKEEG 70
+ IN+D ID IR+ + + PGYG + A + V L E+G
Sbjct: 29 THTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQG 76
>pdb|3QPZ|A Chain A, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|B Chain B, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|C Chain C, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|D Chain D, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3QQ0|A Chain A, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|B Chain B, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|C Chain C, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|D Chain D, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 279
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|2QKF|A Chain A, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|B Chain B, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|C Chain C, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|D Chain D, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
Length = 280
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3QQ1|A Chain A, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|B Chain B, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|C Chain C, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|D Chain D, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 279
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3QPY|A Chain A, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|B Chain B, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|C Chain C, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|D Chain D, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3STE|A Chain A, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|B Chain B, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|C Chain C, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|D Chain D, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3STG|A Chain A, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|B Chain B, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|C Chain C, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|D Chain D, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
Length = 268
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3STF|A Chain A, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|B Chain B, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|C Chain C, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|D Chain D, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3STC|A Chain A, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|B Chain B, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|C Chain C, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|D Chain D, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 269
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+N++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GINVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
Steroid Sulfotransferase
pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
Arabidopsis Thaliana Putative Steroid Sulphotransferase
Length = 326
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 196 EFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKV 230
+F+++ L P P+L T I H +P VKS +CK+
Sbjct: 125 DFDFSSL--PSPRLMNTHISHLSLPESVKSSSCKI 157
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 74/181 (40%), Gaps = 48/181 (26%)
Query: 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI-ARDIGYPVMIKASAGGGGKGMR 140
+G+ + +E+ L K+ G + F+ ++ A+ + I R++G S K R
Sbjct: 57 KGIDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNIILRELG------QSYISVKKTWR 110
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKF-----------------IKNPRHIEIQ 183
+ A++G L+ E AA +G+D++L+ + IK+PR+ I
Sbjct: 111 LNERHYGALQG--LNKSETAAKYGEDKVLIWRRSYDVPPXSLDESDDRHPIKDPRYKHI- 167
Query: 184 GTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
PK +L T+ L + ++ ++ +++EG+++ V
Sbjct: 168 ---------------------PKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVA 206
Query: 244 G 244
Sbjct: 207 A 207
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 180 IEIQGTTYKFLI---QTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIME 236
E+ G L+ Q KE + PK D + APMPG V + G ++ +
Sbjct: 618 FELNGQLRSILVKDTQAMKEMHFH----PKALKDVKGQIGAPMPGKVIDIKVVAGAKVAK 673
Query: 237 GQELCVV 243
GQ LCV+
Sbjct: 674 GQPLCVL 680
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 180 IEIQGTTYKFLI---QTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIME 236
E+ G L+ Q KE + PK D + APMPG V + G ++ +
Sbjct: 618 FELNGQLRSILVKDTQAMKEMHFH----PKALKDVKGQIGAPMPGKVIDIKVVAGAKVAK 673
Query: 237 GQELCVV 243
GQ LCV+
Sbjct: 674 GQPLCVL 680
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
++ APMPG V V +VGD++ GQ L V+
Sbjct: 7 VVSAPMPGKVLRVLVRVGDRVRVGQGLLVL 36
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
Length = 417
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
+ G++ GPT + G K +K L + G+ + R+ + ++G P
Sbjct: 81 FQARGLLLFGPTQKAAXIEGSKAFAKGLXERYGIPT--ARYRVFREPLEALAYLEEVGVP 138
Query: 126 VMIKASAGGGGKGMRIANNDQEA 148
V++K S GKG+ +A + +A
Sbjct: 139 VVVKDSGLAAGKGVTVAFDLHQA 161
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKG 138
E I GDK + +AG+ + D + + + GYPV++K G G+
Sbjct: 81 EVIEACGDKWATSVALAKAGLP--QPKTALATDREEALRLMEAFGYPVVLKPVIGSWGR- 137
Query: 139 MRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP 177
+ D+ A E L +E F ++++++ P
Sbjct: 138 LLAKVTDRAAAEAL-LEHKEVLGGFQHQLFYIQEYVEKP 175
>pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase
From Ehrlichia Chaffeensis
Length = 442
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
L EEG++ GP+ R K +K+L G I G D + + P
Sbjct: 103 LTEEGILVFGPSKAAARLESSKGFTKELCMRYG--IPTAKYGYFVDTNSAYKFIDKHKLP 160
Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD--RILVEKFIK 175
+++KA GKG I + +EA + + FG+ I++E+F++
Sbjct: 161 LVVKADGLAQGKGTVICHTHEEAYNA--VDAMLVHHKFGEAGCAIIIEEFLE 210
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 60 ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
+ V R EG+ GP+ G K +K+L K+ G I ADH +
Sbjct: 97 SGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYG----------IPTADHAAFTS 146
Query: 120 RD--------IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVE 171
+ G P++IKA GKG+ +A +EA+ K + + ++++E
Sbjct: 147 YEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIE 206
Query: 172 KFIKN 176
++++
Sbjct: 207 EYLEG 211
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 26 VAAQSYI----NVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81
VA +SY+ + D + + + + DA+ P ++ +A F +++G F+ P A
Sbjct: 59 VAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINLDALF--EFEKDGY-FVVPNARAT 115
Query: 82 R-GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
M + + L KEA V D E IGYP KA GKG
Sbjct: 116 WIAMHRERLRETLVKEAKVPTSRYMYATT--LDELYEACEKIGYPCHTKAIMSSSGKGSY 173
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
++ + ++ + +A S ++I+VE+ I
Sbjct: 174 FVKGPEDIPKAWEEAKTKARGS--AEKIIVEEHI 205
>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
Length = 412
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 74 IGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAG 133
GP E R G K+ +K+ K+ G+ F + + E + P +IKA
Sbjct: 94 FGPVKEVARLEGSKVYAKRFXKKYGIRTAR-FE-VAETPEELREKIKKFSPPYVIKADGL 151
Query: 134 GGGKGMRIANNDQEAIE 150
GKG+ I ++ +E IE
Sbjct: 152 ARGKGVLILDSKEETIE 168
>pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
Length = 373
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 24 PPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRG 83
PP A + +VD + + H YG E+ + L+ GV ++G
Sbjct: 100 PPGAGEVLESVDVVFPVL--------HGPYG---EDGTIQGLLELAGVPYVGAGVLASAV 148
Query: 84 MGDKLESKKLAKEAGVNIIPGFNGIIR---DADHCVEIARDIGYPVMIKASAGGGGKGM- 139
DK +KKL G+ + G ++R H E R +G PV +K + GG G+
Sbjct: 149 GMDKEFTKKLLAADGLPV--GAYAVLRPPRSTLHRQECER-LGLPVFVKPARGGSSIGVS 205
Query: 140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
R+++ DQ L + A A D +++VE I R +E
Sbjct: 206 RVSSWDQ-------LPAAVARARRHDPKVIVEAAISG-RELE 239
>pdb|1T8H|A Chain A, 1.8 A Crystal Structure Of An Uncharacterized B.
Stearothermophilus Protein
Length = 277
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 10 QRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQT 44
+ H+ +D V IGP + Y D+++D++R T
Sbjct: 166 REHIAPSDIYVAIGPAIGPCCYTVDDRVVDSLRPT 200
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
+KEE V I + R + E+K++ K G+ + + + D +E A++IGYP
Sbjct: 1 MKEEAVRVIEEVLKQGRTAMVEYEAKQVLKAYGLPV--PEEKLAKTLDEALEYAKEIGYP 58
Query: 126 VMIK 129
V++K
Sbjct: 59 VVLK 62
>pdb|3SE7|A Chain A, Ancient Vana
pdb|3SE7|B Chain B, Ancient Vana
pdb|3SE7|C Chain C, Ancient Vana
pdb|3SE7|D Chain D, Ancient Vana
pdb|3SE7|E Chain E, Ancient Vana
pdb|3SE7|F Chain F, Ancient Vana
Length = 346
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 45 RADAVHPG-YGFLSENASFVSRLKEEGVVFIG----PTAECIRGMGDKLESKKLAKEAGV 99
R D V P +G L E+ + L+ G+ ++G +A C+ DK + +A+ AG+
Sbjct: 90 RLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCM----DKSLTYLVARSAGI 145
Query: 100 NIIPGFNGIIRDADHCVEIARD-IGYPVMIKASAGGGGKGM-RIANNDQEAIEGFKLSSQ 157
P F + D +I D + YPV +K + G G+ ++A +E ++G +
Sbjct: 146 A-TPNFWTVTADE----KIPTDQLTYPVFVKPARSGSSFGVSKVAR--EEDLQG----AV 194
Query: 158 EAAASFGDDRILVEKFI 174
EAA + D ++L+E+ +
Sbjct: 195 EAAREY-DSKVLIEEAV 210
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a
Resolution Using Crystals Grown At Ph 6.5
Length = 691
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSE 58
GPPV+ + + I AI + RADAV GF+ E
Sbjct: 31 GPPVSCVKRDSPTQCIQAIAENRADAVTLDGGFIYE 66
>pdb|3FYO|A Chain A, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|B Chain B, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|C Chain C, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|D Chain D, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+ ++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GICVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|3FYP|A Chain A, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|B Chain B, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|C Chain C, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|D Chain D, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
Length = 280
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
G+ ++ + ++ H VE+ R +G P + KAS
Sbjct: 21 GICVLESLDSTLQTCAHYVEVTRKLGIPYIFKAS 54
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 184 GTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEG 237
G + L++T E + L + + +P G+VKSV+ K+GD++ EG
Sbjct: 13 GEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEG 66
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 108 IIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSS 156
++++ + E ++ YP ++K + GG GKG + ++ + E KL++
Sbjct: 126 LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN 175
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 108 IIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSS 156
++++ + E ++ YP ++K + GG GKG + ++ + E KL++
Sbjct: 132 LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN 181
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 108 IIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSS 156
++++ + E ++ YP ++K + GG GKG + ++ + E KL++
Sbjct: 132 LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,071
Number of Sequences: 62578
Number of extensions: 311273
Number of successful extensions: 906
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 134
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)