Query psy10619
Match_columns 246
No_of_seqs 295 out of 2715
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 22:56:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 3.3E-39 7.2E-44 274.0 16.4 210 1-210 30-246 (645)
2 KOG0238|consensus 100.0 1.8E-38 3.8E-43 266.0 14.8 199 1-199 26-227 (670)
3 COG0439 AccC Biotin carboxylas 100.0 2.4E-35 5.2E-40 252.5 17.5 191 1-191 30-220 (449)
4 PRK08654 pyruvate carboxylase 100.0 2.6E-34 5.6E-39 253.3 20.6 190 1-190 30-219 (499)
5 PRK08462 biotin carboxylase; V 100.0 5.2E-33 1.1E-37 243.8 22.2 189 1-189 32-220 (445)
6 PRK12833 acetyl-CoA carboxylas 100.0 9.7E-33 2.1E-37 242.7 22.8 190 1-190 33-222 (467)
7 PRK07178 pyruvate carboxylase 100.0 1E-32 2.2E-37 242.8 21.7 189 1-190 30-218 (472)
8 COG1038 PycA Pyruvate carboxyl 100.0 6.2E-33 1.4E-37 243.1 16.2 208 1-208 35-250 (1149)
9 TIGR00514 accC acetyl-CoA carb 100.0 5.3E-32 1.2E-36 237.5 21.6 188 2-189 31-218 (449)
10 PRK08463 acetyl-CoA carboxylas 100.0 4.9E-32 1.1E-36 238.7 20.2 189 1-190 30-219 (478)
11 PRK05586 biotin carboxylase; V 100.0 9.9E-32 2.2E-36 235.6 21.4 189 2-190 31-219 (447)
12 PRK08591 acetyl-CoA carboxylas 100.0 5E-31 1.1E-35 231.8 22.5 189 2-190 31-219 (451)
13 KOG0369|consensus 100.0 8.1E-32 1.8E-36 232.4 14.5 190 1-190 61-251 (1176)
14 TIGR01235 pyruv_carbox pyruvat 100.0 1.4E-30 3E-35 245.7 21.9 190 1-190 27-219 (1143)
15 PRK12999 pyruvate carboxylase; 100.0 3.2E-30 6.9E-35 244.3 22.3 190 1-190 33-223 (1146)
16 TIGR02712 urea_carbox urea car 100.0 1.5E-29 3.2E-34 240.9 22.5 189 1-190 29-217 (1201)
17 PRK06111 acetyl-CoA carboxylas 100.0 9E-29 2E-33 217.5 22.6 188 2-189 31-218 (450)
18 PLN02257 phosphoribosylamine-- 99.9 1.3E-24 2.7E-29 188.9 21.3 170 11-190 32-203 (434)
19 PF15632 ATPgrasp_Ter: ATP-gra 99.9 1.4E-25 3.1E-30 186.0 14.6 183 1-191 26-222 (329)
20 PRK13789 phosphoribosylamine-- 99.9 1.2E-24 2.6E-29 188.8 19.3 153 29-190 52-209 (426)
21 TIGR01142 purT phosphoribosylg 99.9 1.6E-24 3.5E-29 186.8 19.5 172 2-187 26-198 (380)
22 PLN02735 carbamoyl-phosphate s 99.9 6.5E-25 1.4E-29 208.4 18.1 175 2-190 614-800 (1102)
23 PRK09288 purT phosphoribosylgl 99.9 1.7E-24 3.6E-29 187.6 16.8 174 2-189 39-213 (395)
24 PRK00885 phosphoribosylamine-- 99.9 4E-24 8.6E-29 186.4 18.5 158 30-191 47-204 (420)
25 PRK13790 phosphoribosylamine-- 99.9 4.2E-24 9.2E-29 183.4 17.8 153 30-190 12-164 (379)
26 PRK12767 carbamoyl phosphate s 99.9 3E-24 6.5E-29 181.4 16.0 170 2-187 29-201 (326)
27 TIGR01369 CPSaseII_lrg carbamo 99.9 4E-24 8.8E-29 203.4 15.8 227 3-245 593-837 (1050)
28 TIGR01161 purK phosphoribosyla 99.9 3.6E-23 7.9E-28 176.5 19.1 164 2-187 26-190 (352)
29 PRK05294 carB carbamoyl phosph 99.9 3.9E-24 8.4E-29 204.1 14.5 227 2-245 592-837 (1066)
30 TIGR01369 CPSaseII_lrg carbamo 99.9 1.6E-23 3.4E-28 199.4 18.5 229 3-245 45-298 (1050)
31 TIGR00877 purD phosphoribosyla 99.9 4.3E-23 9.2E-28 180.2 19.2 157 30-191 49-206 (423)
32 COG0458 CarB Carbamoylphosphat 99.9 9.6E-24 2.1E-28 175.7 14.2 227 4-245 37-286 (400)
33 PRK12815 carB carbamoyl phosph 99.9 9.5E-24 2.1E-28 201.0 15.8 171 3-191 594-766 (1068)
34 PRK06395 phosphoribosylamine-- 99.9 3.2E-23 7E-28 180.4 17.8 156 31-192 51-207 (435)
35 PLN02735 carbamoyl-phosphate s 99.9 3.8E-23 8.1E-28 196.5 18.0 230 2-245 61-317 (1102)
36 PRK05784 phosphoribosylamine-- 99.9 1.5E-22 3.3E-27 177.6 20.5 154 31-192 55-222 (486)
37 COG0151 PurD Phosphoribosylami 99.9 1.6E-22 3.4E-27 168.9 18.9 180 32-220 50-236 (428)
38 PRK06019 phosphoribosylaminoim 99.9 1.1E-22 2.4E-27 174.4 18.5 165 2-189 29-194 (372)
39 PRK14569 D-alanyl-alanine synt 99.9 6.2E-23 1.3E-27 170.8 15.9 139 37-188 48-187 (296)
40 KOG0368|consensus 99.9 2.3E-23 5E-28 191.9 13.4 182 5-190 97-302 (2196)
41 PRK14568 vanB D-alanine--D-lac 99.9 7.8E-23 1.7E-27 173.6 13.9 136 43-189 88-224 (343)
42 PLN02948 phosphoribosylaminoim 99.9 2.8E-22 6.1E-27 179.5 18.1 168 2-189 49-217 (577)
43 PRK14572 D-alanyl-alanine synt 99.9 1.3E-22 2.7E-27 172.5 15.1 135 44-187 87-228 (347)
44 PRK05294 carB carbamoyl phosph 99.9 2.3E-22 4.9E-27 192.1 18.1 229 3-245 46-300 (1066)
45 PRK12815 carB carbamoyl phosph 99.9 4E-22 8.7E-27 190.0 17.9 229 2-245 45-299 (1068)
46 PRK01966 ddl D-alanyl-alanine 99.9 1.8E-22 3.8E-27 170.7 13.9 134 45-187 81-219 (333)
47 PRK14570 D-alanyl-alanine synt 99.9 3.6E-22 7.7E-27 170.0 14.9 137 44-189 86-230 (364)
48 PRK07206 hypothetical protein; 99.9 2.4E-22 5.2E-27 175.2 14.1 207 32-245 57-284 (416)
49 PRK01372 ddl D-alanine--D-alan 99.9 3.9E-22 8.5E-27 166.9 14.4 145 36-189 47-192 (304)
50 COG0027 PurT Formate-dependent 99.9 2.1E-21 4.6E-26 155.3 15.9 172 1-186 38-210 (394)
51 PRK02186 argininosuccinate lya 99.9 7.5E-22 1.6E-26 185.6 15.5 212 15-245 46-273 (887)
52 PRK06524 biotin carboxylase-li 99.9 9.1E-21 2E-25 163.8 17.4 145 35-190 94-240 (493)
53 TIGR01205 D_ala_D_alaTIGR D-al 99.9 3.7E-21 7.9E-26 161.9 14.4 137 44-189 62-205 (315)
54 PRK14571 D-alanyl-alanine synt 99.9 1.1E-20 2.4E-25 157.7 15.0 132 44-189 52-184 (299)
55 PRK14573 bifunctional D-alanyl 99.9 1.4E-20 3E-25 175.9 16.2 139 44-190 525-671 (809)
56 PRK06849 hypothetical protein; 99.8 1.8E-20 4E-25 161.9 11.3 172 4-190 34-209 (389)
57 PRK14016 cyanophycin synthetas 99.8 3.6E-19 7.8E-24 163.7 16.5 159 5-188 141-308 (727)
58 PF02786 CPSase_L_D2: Carbamoy 99.8 3.4E-19 7.5E-24 140.4 12.8 105 86-190 1-105 (211)
59 PRK10446 ribosomal protein S6 99.8 4.1E-18 8.9E-23 142.3 15.4 135 45-188 57-196 (300)
60 KOG0237|consensus 99.8 8.1E-18 1.8E-22 144.4 16.6 174 32-212 55-233 (788)
61 COG0026 PurK Phosphoribosylami 99.8 1E-17 2.3E-22 138.2 16.7 166 3-190 29-195 (375)
62 TIGR03103 trio_acet_GNAT GNAT- 99.8 1.7E-18 3.7E-23 154.6 12.0 166 2-190 217-392 (547)
63 TIGR02144 LysX_arch Lysine bio 99.8 7.5E-18 1.6E-22 139.4 15.0 124 61-189 63-187 (280)
64 TIGR00768 rimK_fam alpha-L-glu 99.8 2.7E-17 5.9E-22 135.8 15.3 121 61-187 64-186 (277)
65 PRK13278 purP 5-formaminoimida 99.7 1.4E-16 3E-21 134.4 15.2 157 10-187 55-211 (358)
66 PF13535 ATP-grasp_4: ATP-gras 99.7 3.9E-17 8.5E-22 126.6 10.8 103 83-190 1-103 (184)
67 PF01071 GARS_A: Phosphoribosy 99.7 5.9E-17 1.3E-21 124.6 8.1 130 86-220 2-136 (194)
68 TIGR02068 cya_phycin_syn cyano 99.7 1.8E-16 3.8E-21 148.6 11.9 202 33-245 160-383 (864)
69 TIGR01435 glu_cys_lig_rel glut 99.7 7.9E-16 1.7E-20 139.7 14.0 161 76-245 465-647 (737)
70 PRK02471 bifunctional glutamat 99.7 9.2E-16 2E-20 141.0 14.5 204 32-245 432-661 (752)
71 COG0189 RimK Glutathione synth 99.7 2.2E-15 4.8E-20 125.7 13.7 139 45-191 78-220 (318)
72 COG1181 DdlA D-alanine-D-alani 99.6 4.3E-15 9.4E-20 123.7 12.8 137 44-189 60-201 (317)
73 PF07478 Dala_Dala_lig_C: D-al 99.6 8.2E-16 1.8E-20 120.8 6.9 89 93-190 1-93 (203)
74 PRK13277 5-formaminoimidazole- 99.6 6.7E-14 1.5E-18 116.8 12.8 153 14-187 59-218 (366)
75 PF08443 RimK: RimK-like ATP-g 99.5 1.7E-14 3.7E-19 112.6 8.2 99 84-190 1-102 (190)
76 KOG0370|consensus 99.5 5.5E-14 1.2E-18 126.6 7.4 162 13-190 969-1131(1435)
77 PF02222 ATP-grasp: ATP-grasp 99.5 2E-13 4.2E-18 104.0 8.3 87 94-190 1-88 (172)
78 PLN02941 inositol-tetrakisphos 99.5 8.4E-13 1.8E-17 110.1 12.0 141 34-190 38-210 (328)
79 PF00289 CPSase_L_chain: Carba 99.4 1.9E-13 4.1E-18 96.4 5.4 81 1-81 30-110 (110)
80 PRK12458 glutathione synthetas 99.4 9.7E-12 2.1E-16 105.2 12.6 110 66-188 110-224 (338)
81 PRK00696 sucC succinyl-CoA syn 99.3 7E-12 1.5E-16 108.3 10.6 102 86-189 4-117 (388)
82 TIGR01016 sucCoAbeta succinyl- 99.3 1.4E-11 3E-16 106.4 11.8 102 86-189 4-117 (386)
83 TIGR01380 glut_syn glutathione 99.3 3.1E-11 6.7E-16 101.3 13.2 131 45-188 78-216 (312)
84 PRK05246 glutathione synthetas 99.3 7.2E-11 1.6E-15 99.3 14.0 130 45-187 79-216 (316)
85 KOG0370|consensus 99.3 2.6E-12 5.6E-17 116.1 4.5 204 15-234 430-651 (1435)
86 PF13549 ATP-grasp_5: ATP-gras 99.3 4.2E-11 9.2E-16 94.9 10.2 103 85-189 10-122 (222)
87 PF02655 ATP-grasp_3: ATP-gras 99.2 6.9E-12 1.5E-16 95.2 3.8 85 84-190 1-85 (161)
88 COG3919 Predicted ATP-grasp en 99.2 2.4E-10 5.3E-15 91.6 11.5 138 33-179 59-204 (415)
89 TIGR02291 rimK_rel_E_lig alpha 99.0 4.6E-09 1E-13 87.3 11.0 69 76-146 27-98 (317)
90 COG0045 SucC Succinyl-CoA synt 99.0 2.7E-09 5.8E-14 89.1 8.3 102 87-190 5-116 (387)
91 PRK14046 malate--CoA ligase su 98.9 1.2E-08 2.5E-13 88.0 11.4 102 86-189 4-117 (392)
92 PF08442 ATP-grasp_2: ATP-gras 98.9 2.2E-09 4.8E-14 83.9 5.7 101 87-189 4-116 (202)
93 COG1759 5-formaminoimidazole-4 98.9 2.3E-08 4.9E-13 81.2 11.3 151 14-185 59-212 (361)
94 PLN00124 succinyl-CoA ligase [ 98.8 4.1E-08 8.8E-13 85.0 10.7 101 85-188 30-151 (422)
95 COG1821 Predicted ATP-utilizin 98.8 1.8E-08 3.9E-13 79.3 6.7 111 45-190 73-184 (307)
96 COG2232 Predicted ATP-dependen 98.7 5.1E-08 1.1E-12 79.6 7.8 127 32-190 68-199 (389)
97 PF14397 ATPgrasp_ST: Sugar-tr 98.6 2.5E-07 5.4E-12 76.6 7.8 100 76-176 16-127 (285)
98 PLN02235 ATP citrate (pro-S)-l 98.6 5E-07 1.1E-11 77.5 9.7 103 86-190 7-127 (423)
99 PF02955 GSH-S_ATP: Prokaryoti 98.3 2.8E-06 6E-11 64.8 6.8 79 101-187 12-93 (173)
100 COG0511 AccB Biotin carboxyl c 98.3 8.3E-07 1.8E-11 65.5 3.7 33 212-244 70-102 (140)
101 PF13533 Biotin_lipoyl_2: Biot 98.0 8.4E-06 1.8E-10 48.9 3.8 32 214-245 4-35 (50)
102 PF05770 Ins134_P3_kin: Inosit 98.0 2E-05 4.4E-10 65.3 7.2 115 62-192 69-198 (307)
103 PRK06748 hypothetical protein; 98.0 1E-05 2.3E-10 53.6 3.7 32 214-245 6-37 (83)
104 COG4770 Acetyl/propionyl-CoA c 97.9 1.3E-05 2.8E-10 70.2 4.6 39 206-244 569-607 (645)
105 PF14398 ATPgrasp_YheCD: YheC/ 97.9 0.00034 7.3E-09 57.4 11.8 109 66-190 4-143 (262)
106 PRK05889 putative acetyl-CoA c 97.8 2.7E-05 5.8E-10 50.5 3.8 31 214-244 4-34 (71)
107 KOG0238|consensus 97.6 9.5E-05 2E-09 64.1 4.5 35 210-244 599-633 (670)
108 KOG0369|consensus 97.5 0.00021 4.6E-09 64.1 6.0 42 203-244 1097-1138(1176)
109 PF14403 CP_ATPgrasp_2: Circul 97.5 0.0019 4E-08 56.5 11.6 134 32-176 200-385 (445)
110 PRK08225 acetyl-CoA carboxylas 97.5 0.00018 3.8E-09 46.5 3.8 31 214-244 3-33 (70)
111 PRK06549 acetyl-CoA carboxylas 97.4 0.00025 5.5E-09 51.3 4.8 33 213-245 62-94 (130)
112 PRK05641 putative acetyl-CoA c 97.4 0.00025 5.3E-09 53.0 4.7 34 212-245 84-117 (153)
113 PF02844 GARS_N: Phosphoribosy 97.4 0.00024 5.2E-09 48.9 4.1 50 30-83 47-99 (100)
114 TIGR01108 oadA oxaloacetate de 97.3 0.00055 1.2E-08 62.1 6.5 33 212-244 517-549 (582)
115 PRK14042 pyruvate carboxylase 97.3 0.00056 1.2E-08 62.0 6.4 33 212-244 525-557 (596)
116 TIGR00531 BCCP acetyl-CoA carb 97.1 0.00087 1.9E-08 50.4 4.3 33 213-245 81-120 (156)
117 PF00364 Biotin_lipoyl: Biotin 97.0 0.00071 1.5E-08 44.1 3.2 32 214-245 2-39 (74)
118 PF11379 DUF3182: Protein of u 97.0 0.0066 1.4E-07 50.5 9.4 82 100-186 113-196 (355)
119 COG1038 PycA Pyruvate carboxyl 97.0 0.0013 2.7E-08 60.4 5.2 32 213-244 1080-1111(1149)
120 PRK14040 oxaloacetate decarbox 97.0 0.002 4.3E-08 58.7 6.4 34 212-245 524-557 (593)
121 PF14305 ATPgrasp_TupA: TupA-l 96.9 0.0084 1.8E-07 48.4 9.3 105 80-187 14-136 (239)
122 PLN02983 biotin carboxyl carri 96.9 0.0015 3.2E-08 52.5 4.5 33 213-245 198-237 (274)
123 PRK08225 acetyl-CoA carboxylas 96.9 0.0017 3.7E-08 41.8 3.9 32 213-244 39-70 (70)
124 PRK12999 pyruvate carboxylase; 96.8 0.0023 4.9E-08 62.7 6.2 35 211-245 1075-1109(1146)
125 cd06850 biotinyl_domain The bi 96.8 0.002 4.3E-08 40.7 3.6 31 215-245 2-32 (67)
126 PRK07051 hypothetical protein; 96.7 0.0018 3.8E-08 42.9 3.4 33 213-245 4-43 (80)
127 KOG2799|consensus 96.7 0.01 2.2E-07 49.7 8.3 74 82-157 22-107 (434)
128 PRK06302 acetyl-CoA carboxylas 96.6 0.002 4.3E-08 48.4 3.3 33 213-245 80-119 (155)
129 TIGR01235 pyruv_carbox pyruvat 96.5 0.005 1.1E-07 60.2 6.1 33 212-244 1074-1106(1143)
130 PRK05889 putative acetyl-CoA c 96.5 0.0042 9.2E-08 40.1 3.9 32 213-244 40-71 (71)
131 COG0511 AccB Biotin carboxyl c 96.5 0.0031 6.8E-08 46.5 3.5 34 212-245 107-140 (140)
132 PRK07051 hypothetical protein; 96.3 0.0055 1.2E-07 40.5 3.7 31 214-244 49-79 (80)
133 PRK06748 hypothetical protein; 96.3 0.0065 1.4E-07 40.3 3.8 33 213-245 43-75 (83)
134 PF06849 DUF1246: Protein of u 96.1 0.0049 1.1E-07 43.6 2.7 84 14-104 39-122 (124)
135 PRK09282 pyruvate carboxylase 96.0 0.016 3.5E-07 52.9 6.1 35 211-245 521-555 (592)
136 KOG3895|consensus 96.0 0.024 5.2E-07 47.4 6.4 138 41-190 151-300 (488)
137 PF00364 Biotin_lipoyl: Biotin 95.6 0.016 3.4E-07 37.7 3.4 31 213-243 44-74 (74)
138 TIGR02712 urea_carbox urea car 95.6 0.014 3.1E-07 57.6 4.2 33 212-244 1132-1164(1201)
139 PF02750 Synapsin_C: Synapsin, 95.2 0.13 2.8E-06 39.7 7.5 106 77-193 2-114 (203)
140 cd06850 biotinyl_domain The bi 95.2 0.029 6.3E-07 35.2 3.4 31 213-243 37-67 (67)
141 TIGR00998 8a0101 efflux pump m 95.1 0.024 5.2E-07 48.1 3.6 33 213-245 43-75 (334)
142 PF03133 TTL: Tubulin-tyrosine 94.7 0.03 6.5E-07 46.6 3.4 43 125-176 67-109 (292)
143 PRK10476 multidrug resistance 94.6 0.037 8E-07 47.3 3.7 33 213-245 49-81 (346)
144 PRK10559 p-hydroxybenzoic acid 94.6 0.039 8.5E-07 46.4 3.7 33 213-245 48-80 (310)
145 PF07831 PYNP_C: Pyrimidine nu 94.4 0.049 1.1E-06 35.5 3.1 24 220-243 30-53 (75)
146 COG1042 Acyl-CoA synthetase (N 94.2 0.85 1.9E-05 41.9 11.5 140 35-188 395-566 (598)
147 PRK06549 acetyl-CoA carboxylas 94.0 0.077 1.7E-06 38.5 3.7 32 212-243 98-129 (130)
148 PRK11578 macrolide transporter 93.7 0.072 1.6E-06 46.0 3.6 33 212-244 61-93 (370)
149 TIGR00531 BCCP acetyl-CoA carb 93.7 0.098 2.1E-06 39.3 3.9 32 213-244 125-156 (156)
150 PRK15136 multidrug efflux syst 93.6 0.08 1.7E-06 46.1 3.7 33 213-245 62-94 (390)
151 KOG1447|consensus 93.5 0.68 1.5E-05 37.6 8.5 102 86-189 23-143 (412)
152 PRK03598 putative efflux pump 93.5 0.084 1.8E-06 44.8 3.7 32 214-245 45-76 (331)
153 PRK06302 acetyl-CoA carboxylas 93.4 0.11 2.4E-06 39.0 3.7 32 213-244 124-155 (155)
154 PRK15030 multidrug efflux syst 93.4 0.087 1.9E-06 46.0 3.6 34 212-245 65-98 (397)
155 PRK09859 multidrug efflux syst 93.3 0.092 2E-06 45.6 3.7 33 213-245 62-94 (385)
156 TIGR01843 type_I_hlyD type I s 93.3 0.092 2E-06 45.9 3.6 32 214-245 45-76 (423)
157 cd06663 Biotinyl_lipoyl_domain 93.1 0.13 2.9E-06 33.0 3.4 31 213-243 43-73 (73)
158 PRK09578 periplasmic multidrug 92.9 0.12 2.5E-06 45.0 3.7 33 213-245 64-96 (385)
159 TIGR01730 RND_mfp RND family e 92.9 0.11 2.4E-06 43.6 3.5 33 213-245 27-59 (322)
160 TIGR01000 bacteriocin_acc bact 92.7 0.13 2.8E-06 45.8 3.7 33 213-245 60-92 (457)
161 TIGR03794 NHPM_micro_HlyD NHPM 92.7 0.13 2.8E-06 45.2 3.7 32 214-245 60-91 (421)
162 PRK09783 copper/silver efflux 92.5 0.14 3.1E-06 44.8 3.7 32 213-244 124-156 (409)
163 PRK11556 multidrug efflux syst 92.2 0.16 3.5E-06 44.6 3.7 32 213-244 88-119 (415)
164 PRK05641 putative acetyl-CoA c 92.0 0.22 4.9E-06 37.2 3.7 31 213-243 122-152 (153)
165 PLN02983 biotin carboxyl carri 91.7 0.23 5E-06 40.2 3.7 32 213-244 242-273 (274)
166 PLN02226 2-oxoglutarate dehydr 91.1 0.21 4.7E-06 44.1 3.2 26 219-244 104-129 (463)
167 PF01820 Dala_Dala_lig_N: D-al 90.7 0.27 5.9E-06 35.0 2.9 34 43-76 83-117 (117)
168 PTZ00144 dihydrolipoamide succ 90.5 0.25 5.5E-06 43.2 3.2 26 219-244 57-82 (418)
169 KOG0559|consensus 90.5 0.26 5.7E-06 41.5 3.0 34 213-246 116-149 (457)
170 COG2308 Uncharacterized conser 90.0 1.3 2.8E-05 38.6 6.8 123 96-238 341-465 (488)
171 cd06663 Biotinyl_lipoyl_domain 89.7 0.48 1E-05 30.4 3.2 26 220-245 13-38 (73)
172 PLN02226 2-oxoglutarate dehydr 89.6 0.43 9.3E-06 42.2 3.8 33 213-245 135-167 (463)
173 TIGR03309 matur_yqeB selenium- 89.3 0.47 1E-05 38.4 3.5 33 211-244 163-195 (256)
174 PRK14875 acetoin dehydrogenase 88.9 0.49 1.1E-05 40.4 3.7 32 213-244 46-77 (371)
175 PTZ00144 dihydrolipoamide succ 88.3 0.6 1.3E-05 40.9 3.8 33 213-245 88-120 (418)
176 PRK14042 pyruvate carboxylase 88.1 0.65 1.4E-05 42.6 4.0 34 213-246 563-596 (596)
177 TIGR00998 8a0101 efflux pump m 87.9 0.61 1.3E-05 39.5 3.6 32 213-244 205-236 (334)
178 PRK13380 glycine cleavage syst 87.7 0.57 1.2E-05 34.7 2.9 31 215-245 38-69 (144)
179 PRK15136 multidrug efflux syst 87.5 0.65 1.4E-05 40.4 3.6 31 213-243 216-246 (390)
180 PF09370 TIM-br_sig_trns: TIM- 87.5 13 0.00027 30.5 10.5 114 29-160 92-209 (268)
181 PRK10476 multidrug resistance 87.5 0.58 1.3E-05 40.0 3.2 32 213-244 209-240 (346)
182 PRK09282 pyruvate carboxylase 87.3 0.7 1.5E-05 42.5 3.8 32 213-244 560-591 (592)
183 cd06848 GCS_H Glycine cleavage 86.5 0.97 2.1E-05 30.9 3.3 29 217-245 25-54 (96)
184 PRK14040 oxaloacetate decarbox 86.4 0.83 1.8E-05 42.0 3.8 31 213-243 562-592 (593)
185 TIGR00999 8a0102 Membrane Fusi 85.7 0.93 2E-05 36.9 3.5 29 215-243 91-119 (265)
186 TIGR01730 RND_mfp RND family e 85.7 0.9 1.9E-05 38.0 3.4 32 213-244 135-166 (322)
187 PRK10559 p-hydroxybenzoic acid 85.6 0.95 2.1E-05 38.1 3.5 31 213-243 155-185 (310)
188 PF04174 CP_ATPgrasp_1: A circ 85.5 1.5 3.2E-05 37.2 4.6 91 61-157 222-322 (330)
189 PRK03598 putative efflux pump 85.3 0.81 1.7E-05 38.8 3.0 31 213-243 204-234 (331)
190 PF10281 Ish1: Putative stress 84.8 3.5 7.6E-05 22.7 4.5 32 86-121 5-36 (38)
191 PRK05704 dihydrolipoamide succ 83.9 1.3 2.9E-05 38.7 3.8 33 213-245 46-78 (407)
192 COG1566 EmrA Multidrug resista 83.8 1.1 2.4E-05 38.3 3.1 30 214-243 210-239 (352)
193 TIGR02049 gshA_ferroox glutama 83.8 5.5 0.00012 34.1 7.1 50 126-175 260-312 (403)
194 COG0845 AcrA Membrane-fusion p 83.8 1.3 2.8E-05 37.4 3.6 32 214-245 68-99 (372)
195 PRK09783 copper/silver efflux 83.0 1.5 3.2E-05 38.5 3.7 31 214-244 211-241 (409)
196 TIGR01347 sucB 2-oxoglutarate 82.5 1.7 3.6E-05 38.1 3.8 32 213-244 44-75 (403)
197 cd06849 lipoyl_domain Lipoyl d 81.7 2.1 4.6E-05 26.4 3.2 30 214-243 45-74 (74)
198 PRK11854 aceF pyruvate dehydro 81.5 1.8 4E-05 40.2 3.9 33 213-245 44-76 (633)
199 KOG2156|consensus 80.6 3.6 7.8E-05 36.8 5.1 64 98-175 279-343 (662)
200 COG1566 EmrA Multidrug resista 79.2 2.4 5.1E-05 36.4 3.5 32 214-245 55-86 (352)
201 TIGR03077 not_gcvH glycine cle 79.2 2.5 5.4E-05 29.7 3.1 26 220-245 29-55 (110)
202 PF08886 GshA: Glutamate-cyste 78.7 4 8.7E-05 35.0 4.6 65 90-175 248-315 (404)
203 TIGR03794 NHPM_micro_HlyD NHPM 78.7 2.3 5E-05 37.4 3.5 32 213-244 254-285 (421)
204 COG0508 AceF Pyruvate/2-oxoglu 78.6 2.4 5.3E-05 37.1 3.5 33 213-245 46-78 (404)
205 PF05896 NQRA: Na(+)-transloca 78.5 1.8 3.9E-05 35.2 2.5 30 213-242 30-59 (257)
206 cd06251 M14_ASTE_ASPA_like_1 A 78.4 2.6 5.6E-05 35.1 3.5 30 213-243 220-249 (287)
207 cd06849 lipoyl_domain Lipoyl d 78.2 3.5 7.5E-05 25.4 3.4 30 216-245 10-39 (74)
208 TIGR01843 type_I_hlyD type I s 78.1 2.6 5.6E-05 36.8 3.6 31 213-243 272-303 (423)
209 TIGR02927 SucB_Actino 2-oxoglu 78.0 2.6 5.5E-05 38.9 3.6 32 213-244 179-210 (590)
210 COG1181 DdlA D-alanine-D-alani 77.7 0.11 2.4E-06 43.8 -4.8 103 82-190 47-153 (317)
211 cd06253 M14_ASTE_ASPA_like_3 A 76.9 2.9 6.4E-05 35.0 3.4 30 213-243 230-259 (298)
212 TIGR02927 SucB_Actino 2-oxoglu 76.5 2.5 5.4E-05 39.0 3.1 27 219-245 148-174 (590)
213 PRK12784 hypothetical protein; 76.2 3.8 8.2E-05 26.5 2.9 31 214-244 45-75 (84)
214 TIGR00830 PTBA PTS system, glu 75.0 3.8 8.3E-05 29.3 3.1 29 216-244 74-102 (121)
215 TIGR01348 PDHac_trf_long pyruv 74.8 3.5 7.6E-05 37.7 3.6 32 213-244 159-190 (546)
216 PRK00624 glycine cleavage syst 74.5 4.1 8.8E-05 28.9 3.1 26 220-245 31-57 (114)
217 KOG2158|consensus 74.5 2.8 6.1E-05 36.8 2.7 43 108-150 211-253 (565)
218 KOG1057|consensus 73.7 17 0.00037 34.3 7.5 69 64-134 108-189 (1018)
219 PRK11854 aceF pyruvate dehydro 73.5 4 8.6E-05 38.0 3.7 32 213-244 248-279 (633)
220 TIGR02994 ectoine_eutE ectoine 71.7 4.8 0.0001 34.2 3.5 30 213-243 256-285 (325)
221 PRK11855 dihydrolipoamide acet 71.4 4.7 0.0001 36.9 3.6 32 213-244 162-193 (547)
222 TIGR01348 PDHac_trf_long pyruv 71.4 5 0.00011 36.7 3.7 33 213-245 43-75 (546)
223 TIGR00527 gcvH glycine cleavag 70.8 4.5 9.9E-05 29.2 2.7 27 219-245 34-61 (127)
224 cd06255 M14_ASTE_ASPA_like_5 A 70.6 5.4 0.00012 33.3 3.5 30 213-243 232-261 (293)
225 PF01551 Peptidase_M23: Peptid 70.5 5.3 0.00012 26.9 2.9 22 223-244 52-73 (96)
226 PLN02528 2-oxoisovalerate dehy 70.4 5.7 0.00012 35.0 3.8 32 213-244 42-73 (416)
227 cd00210 PTS_IIA_glc PTS_IIA, P 70.3 5.7 0.00012 28.6 3.1 27 217-243 75-101 (124)
228 PRK01202 glycine cleavage syst 70.3 5.1 0.00011 28.9 2.9 27 219-245 35-62 (127)
229 TIGR01349 PDHac_trf_mito pyruv 70.2 5.7 0.00012 35.2 3.7 32 213-244 43-75 (435)
230 cd06252 M14_ASTE_ASPA_like_2 A 70.2 5.5 0.00012 33.6 3.6 30 213-243 245-274 (316)
231 cd06254 M14_ASTE_ASPA_like_4 A 69.8 5.8 0.00012 33.0 3.5 30 213-243 224-253 (288)
232 TIGR03586 PseI pseudaminic aci 69.6 53 0.0012 27.9 9.2 91 61-175 81-171 (327)
233 cd06250 M14_PaAOTO_like An unc 69.2 5.9 0.00013 34.1 3.5 30 213-243 290-319 (359)
234 PF13375 RnfC_N: RnfC Barrel s 69.1 4.8 0.0001 27.8 2.5 24 221-244 39-62 (101)
235 PRK09578 periplasmic multidrug 69.0 5.4 0.00012 34.6 3.4 32 213-244 172-205 (385)
236 PRK12784 hypothetical protein; 67.6 7.2 0.00016 25.3 2.8 32 214-245 7-38 (84)
237 PF12700 HlyD_2: HlyD family s 67.2 4 8.8E-05 34.2 2.2 29 215-243 137-190 (328)
238 PF14243 DUF4343: Domain of un 66.9 8.3 0.00018 27.9 3.4 57 124-188 2-58 (130)
239 PRK11855 dihydrolipoamide acet 66.7 6.9 0.00015 35.8 3.6 33 213-245 45-77 (547)
240 COG0213 DeoA Thymidine phospho 66.3 17 0.00037 31.7 5.6 24 220-243 375-398 (435)
241 TIGR02645 ARCH_P_rylase putati 66.1 5.6 0.00012 35.6 2.8 24 220-243 445-468 (493)
242 PRK15030 multidrug efflux syst 65.9 6.9 0.00015 34.1 3.4 31 213-243 174-206 (397)
243 PRK11856 branched-chain alpha- 65.9 7.7 0.00017 34.1 3.7 32 213-244 46-77 (411)
244 PRK05820 deoA thymidine phosph 65.9 5.4 0.00012 35.3 2.7 24 220-243 379-402 (440)
245 PF00358 PTS_EIIA_1: phosphoen 65.8 5.2 0.00011 29.1 2.1 26 218-243 80-105 (132)
246 TIGR02643 T_phosphoryl thymidi 65.5 5.5 0.00012 35.1 2.6 24 220-243 378-401 (437)
247 PRK04350 thymidine phosphoryla 65.1 6 0.00013 35.4 2.8 24 220-243 437-460 (490)
248 cd00851 MTH1175 This uncharact 64.7 14 0.00031 24.9 4.2 70 2-75 5-89 (103)
249 PRK09439 PTS system glucose-sp 64.5 8.6 0.00019 29.3 3.2 28 217-244 97-124 (169)
250 PRK11892 pyruvate dehydrogenas 64.0 8.5 0.00018 34.4 3.6 33 213-245 46-79 (464)
251 KOG0557|consensus 63.6 6 0.00013 34.8 2.5 24 221-244 53-76 (470)
252 TIGR03327 AMP_phos AMP phospho 63.0 6.6 0.00014 35.2 2.7 24 220-243 446-469 (500)
253 PRK06078 pyrimidine-nucleoside 62.4 6.7 0.00015 34.6 2.6 24 220-243 374-397 (434)
254 TIGR02644 Y_phosphoryl pyrimid 62.0 7.3 0.00016 34.1 2.7 24 220-243 372-395 (405)
255 PLN02744 dihydrolipoyllysine-r 61.6 10 0.00022 34.5 3.7 32 213-244 156-188 (539)
256 COG0754 Gsp Glutathionylspermi 60.1 3 6.5E-05 35.4 0.1 100 62-176 243-342 (387)
257 TIGR02971 heterocyst_DevB ABC 59.0 9 0.00019 32.3 2.8 29 214-243 206-234 (327)
258 COG3608 Predicted deacylase [G 58.6 11 0.00024 31.9 3.1 30 213-243 257-286 (331)
259 COG1726 NqrA Na+-transporting 58.0 6.7 0.00014 33.4 1.7 29 213-241 30-58 (447)
260 PF02749 QRPTase_N: Quinolinat 57.9 13 0.00029 24.7 3.0 24 221-244 44-67 (88)
261 COG2190 NagE Phosphotransferas 57.4 12 0.00027 28.0 2.9 29 215-243 80-108 (156)
262 PRK13397 3-deoxy-7-phosphohept 57.3 1.1E+02 0.0023 25.1 10.3 131 20-175 18-161 (250)
263 PRK05849 hypothetical protein; 56.4 1.2E+02 0.0027 29.2 9.9 91 84-175 8-118 (783)
264 PF06898 YqfD: Putative stage 56.1 20 0.00042 31.3 4.4 177 32-241 19-225 (385)
265 TIGR01000 bacteriocin_acc bact 55.7 13 0.00027 33.2 3.3 31 213-243 317-348 (457)
266 TIGR02876 spore_yqfD sporulati 55.1 19 0.00042 31.3 4.2 98 110-241 116-222 (382)
267 smart00481 POLIIIAc DNA polyme 55.1 48 0.001 20.4 5.1 44 31-74 14-58 (67)
268 KOG2157|consensus 54.5 20 0.00043 32.3 4.2 53 123-176 199-251 (497)
269 PF13380 CoA_binding_2: CoA bi 53.8 38 0.00083 23.8 4.9 42 35-78 69-110 (116)
270 TIGR03450 mycothiol_INO1 inosi 53.7 38 0.00083 28.9 5.5 69 32-103 110-180 (351)
271 PRK11556 multidrug efflux syst 52.8 14 0.0003 32.6 3.0 31 213-243 196-228 (415)
272 PRK09859 multidrug efflux syst 52.6 14 0.00031 32.0 3.0 32 213-244 170-203 (385)
273 PRK11578 macrolide transporter 51.7 18 0.00039 31.2 3.5 30 214-243 185-217 (370)
274 PLN02744 dihydrolipoyllysine-r 50.8 18 0.00039 33.0 3.4 24 221-244 127-150 (539)
275 COG4942 Membrane-bound metallo 50.2 13 0.00028 32.6 2.3 20 224-243 371-390 (420)
276 COG0509 GcvH Glycine cleavage 49.5 14 0.0003 26.8 2.0 25 221-245 39-64 (131)
277 COG1149 MinD superfamily P-loo 49.1 57 0.0012 27.0 5.7 63 12-75 182-244 (284)
278 PRK13820 argininosuccinate syn 49.0 79 0.0017 27.7 6.9 67 34-103 98-165 (394)
279 PLN02522 ATP citrate (pro-S)-l 48.6 50 0.0011 30.7 5.9 57 16-78 79-138 (608)
280 TIGR03450 mycothiol_INO1 inosi 48.2 53 0.0012 28.1 5.5 71 35-105 140-211 (351)
281 TIGR02990 ectoine_eutA ectoine 47.8 57 0.0012 26.3 5.6 62 32-102 165-229 (239)
282 TIGR01108 oadA oxaloacetate de 46.6 15 0.00034 33.8 2.4 28 213-240 555-582 (582)
283 TIGR01936 nqrA NADH:ubiquinone 45.6 20 0.00043 32.0 2.8 27 216-242 33-59 (447)
284 PF00764 Arginosuc_synth: Argi 45.0 97 0.0021 27.1 6.8 70 32-104 92-164 (388)
285 PRK12342 hypothetical protein; 44.3 44 0.00095 27.3 4.4 59 16-74 78-140 (254)
286 PF01597 GCV_H: Glycine cleava 43.9 28 0.0006 24.9 2.9 17 229-245 40-56 (122)
287 TIGR00268 conserved hypothetic 43.7 1.7E+02 0.0038 23.6 8.3 111 35-154 97-226 (252)
288 cd00114 LIGANc NAD+ dependent 42.8 71 0.0015 26.9 5.6 36 86-122 228-263 (307)
289 PRK05352 Na(+)-translocating N 41.7 19 0.00041 32.1 2.1 28 216-243 34-61 (448)
290 PF03102 NeuB: NeuB family; I 41.3 47 0.001 26.9 4.2 17 36-52 60-76 (241)
291 COG0615 TagD Cytidylyltransfer 41.2 58 0.0013 24.0 4.2 50 12-71 62-112 (140)
292 PF09891 DUF2118: Uncharacteri 41.2 22 0.00047 26.5 2.0 31 213-243 81-111 (150)
293 COG1260 INO1 Myo-inositol-1-ph 41.1 95 0.0021 26.6 5.9 68 38-105 152-220 (362)
294 PRK10871 nlpD lipoprotein NlpD 40.2 22 0.00048 30.0 2.2 22 223-244 269-290 (319)
295 CHL00162 thiG thiamin biosynth 40.2 2.1E+02 0.0045 23.5 9.3 98 57-163 145-245 (267)
296 TIGR01361 DAHP_synth_Bsub phos 39.6 2.1E+02 0.0046 23.4 8.0 86 61-172 80-168 (260)
297 PF13378 MR_MLE_C: Enolase C-t 38.3 49 0.0011 22.7 3.5 48 30-77 3-53 (111)
298 TIGR03569 NeuB_NnaB N-acetylne 38.3 72 0.0016 27.2 5.0 77 61-156 80-156 (329)
299 PRK05370 argininosuccinate syn 38.0 1.9E+02 0.0042 25.8 7.6 72 31-103 108-185 (447)
300 cd00672 CysRS_core catalytic c 37.3 2.1E+02 0.0045 22.6 7.4 107 30-148 41-147 (213)
301 COG3473 Maleate cis-trans isom 37.1 49 0.0011 26.2 3.4 52 32-83 163-217 (238)
302 PRK04527 argininosuccinate syn 37.1 1.4E+02 0.003 26.3 6.6 69 33-104 97-171 (400)
303 PRK03359 putative electron tra 37.1 66 0.0014 26.3 4.4 59 16-74 81-143 (256)
304 KOG2310|consensus 37.1 18 0.00039 32.7 1.2 61 27-87 34-98 (646)
305 PRK10826 2-deoxyglucose-6-phos 36.9 2E+02 0.0044 22.4 7.3 112 31-148 94-215 (222)
306 TIGR01917 gly_red_sel_B glycin 36.8 86 0.0019 27.7 5.2 87 34-130 289-388 (431)
307 cd01424 MGS_CPS_II Methylglyox 36.4 98 0.0021 21.2 4.8 16 36-51 58-73 (110)
308 PRK00509 argininosuccinate syn 35.9 99 0.0022 27.2 5.6 66 34-103 98-168 (399)
309 COG2099 CobK Precorrin-6x redu 35.4 55 0.0012 26.7 3.6 76 30-123 51-128 (257)
310 PRK10558 alpha-dehydro-beta-de 35.3 2.5E+02 0.0054 22.9 9.2 80 35-125 30-116 (256)
311 PRK08057 cobalt-precorrin-6x r 35.2 59 0.0013 26.5 3.9 42 33-74 53-96 (248)
312 PF03808 Glyco_tran_WecB: Glyc 35.2 62 0.0014 24.5 3.8 40 33-72 89-128 (172)
313 PRK00208 thiG thiazole synthas 34.8 2.1E+02 0.0045 23.4 6.8 46 29-74 18-66 (250)
314 COG4029 Uncharacterized protei 34.5 1.5E+02 0.0032 21.3 5.2 44 109-157 16-60 (142)
315 TIGR02263 benz_CoA_red_C benzo 34.4 58 0.0013 28.3 3.9 42 33-74 309-355 (380)
316 PRK05678 succinyl-CoA syntheta 34.4 95 0.0021 26.0 5.0 49 35-83 79-129 (291)
317 PRK01045 ispH 4-hydroxy-3-meth 34.0 2.8E+02 0.0062 23.3 7.7 98 53-151 36-150 (298)
318 PRK12360 4-hydroxy-3-methylbut 33.9 2.8E+02 0.006 23.1 7.8 98 53-150 37-152 (281)
319 PF02571 CbiJ: Precorrin-6x re 33.9 54 0.0012 26.7 3.5 42 33-74 54-97 (249)
320 PF00018 SH3_1: SH3 domain; I 33.7 28 0.00061 19.9 1.3 14 233-246 15-28 (48)
321 COG1440 CelA Phosphotransferas 33.7 1.6E+02 0.0035 20.3 5.6 59 34-101 18-76 (102)
322 TIGR01918 various_sel_PB selen 33.6 1E+02 0.0022 27.3 5.1 15 89-103 355-369 (431)
323 PRK10128 2-keto-3-deoxy-L-rham 33.4 2E+02 0.0044 23.7 6.7 80 35-125 29-115 (267)
324 PF02421 FeoB_N: Ferrous iron 33.4 1.5E+02 0.0032 22.2 5.5 37 38-74 71-109 (156)
325 cd04728 ThiG Thiazole synthase 33.1 2.7E+02 0.0058 22.7 9.4 119 32-163 107-231 (248)
326 TIGR00034 aroFGH phospho-2-deh 33.0 1.5E+02 0.0032 25.5 6.0 62 110-179 239-305 (344)
327 TIGR03190 benz_CoA_bzdN benzoy 33.0 79 0.0017 27.4 4.5 64 11-74 277-347 (377)
328 PF01177 Asp_Glu_race: Asp/Glu 32.9 65 0.0014 25.0 3.8 47 35-81 161-212 (216)
329 PRK07945 hypothetical protein; 32.8 2.3E+02 0.0049 24.2 7.2 85 33-119 246-332 (335)
330 COG1775 HgdB Benzoyl-CoA reduc 32.8 57 0.0012 28.1 3.5 61 14-74 287-353 (379)
331 cd00248 Mth938-like Mth938-lik 32.7 1.7E+02 0.0037 20.3 6.3 44 31-74 38-83 (109)
332 PF02579 Nitro_FeMo-Co: Dinitr 32.7 1.2E+02 0.0026 19.8 4.6 37 35-75 43-79 (94)
333 COG4109 Predicted transcriptio 32.7 2.1E+02 0.0044 24.9 6.6 93 33-127 122-227 (432)
334 cd01423 MGS_CPS_I_III Methylgl 32.6 58 0.0013 22.7 3.1 40 35-74 61-105 (116)
335 COG1433 Uncharacterized conser 32.4 95 0.0021 22.2 4.1 63 9-75 16-91 (121)
336 TIGR03447 mycothiol_MshC cyste 32.4 3E+02 0.0064 24.4 7.9 85 31-122 58-142 (411)
337 cd05565 PTS_IIB_lactose PTS_II 32.3 1.7E+02 0.0036 20.1 5.4 62 32-102 15-76 (99)
338 PHA02117 glutathionylspermidin 32.3 24 0.00051 30.9 1.2 97 66-176 253-352 (397)
339 PF13419 HAD_2: Haloacid dehal 31.7 62 0.0013 23.6 3.3 90 32-127 80-174 (176)
340 PRK13398 3-deoxy-7-phosphohept 31.6 2.9E+02 0.0064 22.7 10.0 111 36-172 45-170 (266)
341 TIGR01454 AHBA_synth_RP 3-amin 31.1 2.4E+02 0.0053 21.5 8.9 114 31-151 77-202 (205)
342 COG0370 FeoB Fe2+ transport sy 30.7 3.9E+02 0.0084 25.3 8.6 83 37-119 73-159 (653)
343 TIGR00575 dnlj DNA ligase, NAD 30.6 1.2E+02 0.0027 28.5 5.6 36 86-122 225-260 (652)
344 cd00562 NifX_NifB This CD repr 30.4 1.2E+02 0.0025 20.2 4.3 69 2-74 4-86 (102)
345 cd01422 MGS Methylglyoxal synt 30.2 1.3E+02 0.0028 21.1 4.5 40 35-74 60-105 (115)
346 PF07085 DRTGG: DRTGG domain; 30.1 62 0.0013 22.1 2.8 47 35-82 51-97 (105)
347 PF04914 DltD_C: DltD C-termin 30.0 51 0.0011 23.9 2.4 61 30-103 34-94 (130)
348 COG0739 NlpD Membrane proteins 29.8 40 0.00087 27.4 2.1 20 225-244 215-234 (277)
349 PRK10255 PTS system N-acetyl g 29.5 52 0.0011 30.9 2.9 24 221-244 579-602 (648)
350 cd01995 ExsB ExsB is a transcr 29.4 2.4E+02 0.0051 20.9 6.4 16 111-126 125-140 (169)
351 PF01653 DNA_ligase_aden: NAD- 29.1 1.3E+02 0.0027 25.6 5.0 35 86-121 235-269 (315)
352 cd00532 MGS-like MGS-like doma 29.1 1.1E+02 0.0024 21.2 4.0 17 85-101 86-102 (112)
353 PRK05305 phosphatidylserine de 28.9 37 0.00079 26.7 1.7 17 225-241 186-202 (206)
354 COG0329 DapA Dihydrodipicolina 28.6 3.5E+02 0.0075 22.7 7.5 95 29-129 22-136 (299)
355 TIGR01995 PTS-II-ABC-beta PTS 28.4 55 0.0012 30.5 3.0 28 217-244 539-566 (610)
356 PF05690 ThiG: Thiazole biosyn 28.2 1.3E+02 0.0028 24.4 4.6 20 142-161 210-229 (247)
357 cd01572 QPRTase Quinolinate ph 28.1 72 0.0016 26.3 3.3 25 220-244 56-80 (268)
358 PRK09824 PTS system beta-gluco 27.8 53 0.0012 30.7 2.7 26 219-244 557-582 (627)
359 PRK12595 bifunctional 3-deoxy- 27.4 4.1E+02 0.0089 23.0 11.0 89 61-175 173-264 (360)
360 PRK05234 mgsA methylglyoxal sy 27.3 1.7E+02 0.0038 21.4 4.9 18 35-52 65-82 (142)
361 cd00951 KDGDH 5-dehydro-4-deox 27.3 3.6E+02 0.0078 22.3 7.6 91 33-129 22-131 (289)
362 PF11071 DUF2872: Protein of u 27.2 1.4E+02 0.003 21.8 4.1 113 32-154 9-138 (141)
363 COG1212 KdsB CMP-2-keto-3-deox 27.1 3.4E+02 0.0074 22.0 9.2 96 33-142 51-157 (247)
364 PF01333 Apocytochr_F_C: Apocy 27.0 26 0.00056 24.7 0.4 17 225-241 45-61 (118)
365 TIGR03191 benz_CoA_bzdO benzoy 26.9 92 0.002 27.6 4.0 20 33-52 349-368 (430)
366 PRK15447 putative protease; Pr 26.8 2.8E+02 0.0062 23.2 6.7 95 29-130 12-114 (301)
367 TIGR01945 rnfC electron transp 26.7 42 0.0009 29.8 1.8 24 220-243 39-62 (435)
368 smart00532 LIGANc Ligase N fam 26.4 1.8E+02 0.0038 26.0 5.6 36 86-122 232-267 (441)
369 PRK07956 ligA NAD-dependent DN 26.4 1.3E+02 0.0029 28.4 5.0 36 86-122 237-272 (665)
370 cd04728 ThiG Thiazole synthase 26.1 3.5E+02 0.0075 22.1 6.7 46 29-74 17-66 (248)
371 PF03652 UPF0081: Uncharacteri 26.1 1.9E+02 0.0041 21.0 4.9 22 32-53 38-59 (135)
372 PRK02929 L-arabinose isomerase 25.7 1.1E+02 0.0025 27.7 4.4 70 32-101 55-144 (499)
373 PRK12418 cysteinyl-tRNA synthe 25.7 4.3E+02 0.0092 23.2 7.7 85 31-122 31-115 (384)
374 TIGR03239 GarL 2-dehydro-3-deo 25.7 3.7E+02 0.0079 21.9 8.5 80 35-125 23-109 (249)
375 PRK15468 carboxysome structura 25.6 54 0.0012 22.8 1.8 17 167-184 4-20 (111)
376 TIGR00435 cysS cysteinyl-tRNA 25.6 4.6E+02 0.0099 23.6 8.1 85 31-122 43-127 (465)
377 cd05124 AFK Actin-Fragmin Kina 25.3 3.4E+02 0.0074 22.0 6.5 21 85-105 34-54 (238)
378 TIGR00164 PS_decarb_rel phosph 25.3 45 0.00097 25.8 1.6 17 225-241 166-182 (189)
379 TIGR03249 KdgD 5-dehydro-4-deo 25.3 4E+02 0.0086 22.1 8.3 91 32-129 26-136 (296)
380 PF03102 NeuB: NeuB family; I 25.3 1.1E+02 0.0024 24.7 3.9 92 60-175 59-150 (241)
381 PF00205 TPP_enzyme_M: Thiamin 25.2 87 0.0019 22.4 3.0 40 63-103 5-44 (137)
382 TIGR01019 sucCoAalpha succinyl 25.0 1.8E+02 0.0039 24.2 5.1 47 35-81 77-125 (286)
383 PRK00260 cysS cysteinyl-tRNA s 24.9 4.3E+02 0.0094 23.7 7.9 86 30-122 44-129 (463)
384 TIGR01986 glut_syn_euk glutath 24.7 1.4E+02 0.0031 26.8 4.7 42 125-175 361-402 (472)
385 TIGR00315 cdhB CO dehydrogenas 24.6 2.5E+02 0.0053 21.3 5.3 44 32-75 15-60 (162)
386 PF07805 HipA_N: HipA-like N-t 24.5 47 0.001 21.5 1.3 24 82-105 41-64 (81)
387 PF15632 ATPgrasp_Ter: ATP-gra 24.4 1.1E+02 0.0024 26.0 3.9 82 61-156 57-142 (329)
388 PF13727 CoA_binding_3: CoA-bi 24.3 61 0.0013 23.9 2.2 40 33-73 129-171 (175)
389 PLN02977 glutathione synthetas 24.2 56 0.0012 29.4 2.1 45 125-175 363-407 (478)
390 COG0157 NadC Nicotinate-nucleo 24.2 91 0.002 25.8 3.1 25 220-244 62-86 (280)
391 CHL00162 thiG thiamin biosynth 23.8 4E+02 0.0087 21.9 6.6 46 29-74 24-74 (267)
392 PF02593 dTMP_synthase: Thymid 23.7 1.9E+02 0.0041 23.1 4.8 39 87-126 92-134 (217)
393 PLN00200 argininosuccinate syn 23.5 3.4E+02 0.0073 24.0 6.7 66 34-103 102-172 (404)
394 cd01999 Argininosuccinate_Synt 23.1 5.1E+02 0.011 22.7 7.7 68 35-104 96-166 (385)
395 TIGR00715 precor6x_red precorr 22.9 1.1E+02 0.0023 25.1 3.4 43 32-74 52-96 (256)
396 PRK11637 AmiB activator; Provi 22.8 60 0.0013 28.7 2.1 22 223-244 378-399 (428)
397 COG4656 RnfC Predicted NADH:ub 22.7 53 0.0012 29.7 1.7 19 224-242 45-63 (529)
398 PRK11649 putative peptidase; P 22.7 67 0.0015 28.6 2.3 19 226-244 365-383 (439)
399 COG0137 ArgG Argininosuccinate 22.7 2.1E+02 0.0046 25.0 5.1 71 31-104 98-171 (403)
400 KOG0368|consensus 22.6 70 0.0015 33.1 2.5 32 213-244 686-717 (2196)
401 cd04865 LigD_Pol_like_2 LigD_P 22.6 3.6E+02 0.0078 21.7 6.1 72 115-190 124-202 (228)
402 COG2022 ThiG Uncharacterized e 22.5 4.3E+02 0.0093 21.5 7.8 67 29-96 24-94 (262)
403 PRK10481 hypothetical protein; 22.2 2.3E+02 0.005 22.7 5.0 49 33-83 167-219 (224)
404 PRK05035 electron transport co 22.1 58 0.0013 30.9 1.9 23 221-243 46-68 (695)
405 PF10070 DUF2309: Uncharacteri 22.1 1.4E+02 0.003 28.9 4.4 60 45-104 500-561 (788)
406 COG1378 Predicted transcriptio 22.1 4.3E+02 0.0094 21.4 6.9 44 61-104 4-47 (247)
407 COG1244 Predicted Fe-S oxidore 22.0 2.2E+02 0.0048 24.3 5.0 66 85-154 247-315 (358)
408 cd03557 L-arabinose_isomerase 21.9 1.5E+02 0.0033 26.8 4.3 70 32-101 49-138 (484)
409 PF13407 Peripla_BP_4: Peripla 21.4 2E+02 0.0044 22.6 4.8 40 36-75 46-85 (257)
410 PTZ00399 cysteinyl-tRNA-synthe 21.3 4.9E+02 0.011 24.7 7.7 91 30-126 81-175 (651)
411 PF03917 GSH_synth_ATP: Eukary 21.3 1.4E+02 0.0031 25.9 3.9 43 125-175 258-300 (370)
412 TIGR00032 argG argininosuccina 21.1 4.4E+02 0.0095 23.2 6.9 67 34-103 95-164 (394)
413 PF04296 DUF448: Protein of un 21.0 1.9E+02 0.0041 18.7 3.7 29 126-154 27-55 (78)
414 PRK00208 thiG thiazole synthas 20.8 4.7E+02 0.01 21.4 9.8 23 141-163 209-231 (250)
415 PRK02083 imidazole glycerol ph 20.7 4.5E+02 0.0098 21.1 8.8 89 33-126 154-251 (253)
416 TIGR03351 PhnX-like phosphonat 20.7 4E+02 0.0087 20.5 8.2 90 32-126 90-186 (220)
417 COG4072 Uncharacterized protei 20.5 1E+02 0.0022 22.5 2.4 31 213-243 92-122 (161)
418 PRK02261 methylaspartate mutas 20.5 3.4E+02 0.0075 19.7 5.9 17 34-50 43-59 (137)
419 cd03012 TlpA_like_DipZ_like Tl 20.5 1.2E+02 0.0027 21.1 3.0 35 69-103 55-89 (126)
420 PRK10676 DNA-binding transcrip 20.3 2.5E+02 0.0054 23.0 5.1 56 90-152 34-89 (263)
421 PRK13371 4-hydroxy-3-methylbut 20.2 6E+02 0.013 22.3 7.7 99 53-152 74-194 (387)
422 PRK08097 ligB NAD-dependent DN 20.2 2.4E+02 0.0051 26.2 5.3 37 86-122 232-268 (562)
423 cd00228 eu-GS Eukaryotic Gluta 20.2 1.9E+02 0.0042 26.0 4.6 42 125-175 357-399 (471)
424 TIGR02778 ligD_pol DNA polymer 20.2 4.1E+02 0.0089 21.7 6.1 72 115-190 139-217 (245)
425 COG1412 Uncharacterized protei 20.2 2.6E+02 0.0056 20.5 4.5 33 61-103 89-122 (136)
426 PRK08392 hypothetical protein; 20.1 4.3E+02 0.0094 20.6 6.6 92 35-130 107-212 (215)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=3.3e-39 Score=274.02 Aligned_cols=210 Identities=51% Similarity=0.844 Sum_probs=195.8
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
|||||.|.+++|+++||+++.++|.+..+||++.+.|++.+++.+.++|+|+|||++||+.+++.++..|+.++||++.+
T Consensus 30 AVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~a 109 (645)
T COG4770 30 AVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGA 109 (645)
T ss_pred EEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
++.+.||...|.++.++|+|+.|++.....+.+++..+++++|||++||+..|+||+|++++.+.+|+.+++.....++.
T Consensus 110 I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~ 189 (645)
T COG4770 110 IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAK 189 (645)
T ss_pred HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecceee---cchhhhhh----hhcCCCCCCCC
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLI---QTEKEFEY----AKLLPPKPKLD 210 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v---~~~~~~~~----~~~~~~~~~~~ 210 (246)
.+|+++.++||+|+...+++.++|++|.++. ..+..|+. +|++..+|.+-
T Consensus 190 asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~ 246 (645)
T COG4770 190 ASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPF 246 (645)
T ss_pred hhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCC
Confidence 9999999999999999999999999999873 25555554 45555444433
No 2
>KOG0238|consensus
Probab=100.00 E-value=1.8e-38 Score=265.96 Aligned_cols=199 Identities=54% Similarity=0.864 Sum_probs=190.0
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
|||||.|.++.|+++||+++++++.+...+|++.+.+++.+++.+..+|+|++||++|+..+++.|+..|+.++||++.+
T Consensus 26 AV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~a 105 (670)
T KOG0238|consen 26 AVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSA 105 (670)
T ss_pred EEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchHHHHHHHHcCCeEECCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
++-+.||...|++++.+|+|+.|++.....|.+++...++++|||+++|+..|+||+|++++.+.+|+++.++....++.
T Consensus 106 IrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~ 185 (670)
T KOG0238|consen 106 IRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAA 185 (670)
T ss_pred HHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecceeec---chhhhhh
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ---TEKEFEY 199 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~---~~~~~~~ 199 (246)
.+|+++.+|+|+||...+++.|++++|+++-. .++.|..
T Consensus 186 ~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSv 227 (670)
T KOG0238|consen 186 KSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSV 227 (670)
T ss_pred hhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccch
Confidence 99999999999999999999999999998832 4555544
No 3
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=2.4e-35 Score=252.49 Aligned_cols=191 Identities=49% Similarity=0.863 Sum_probs=181.5
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
+|||+.|.++.|..+||+++.+++.....+|++.++++..++..+.|+|+|++||++++..+++.+++.|+.++||++++
T Consensus 30 av~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~ 109 (449)
T COG0439 30 AVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEA 109 (449)
T ss_pred EEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHH
Confidence 58999999999999999999999767778899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
++.|.||..+|++++++|+|+||+....+.+.+++.++++.+||||||||..|+||+|+++|++.++|.+++..+..++.
T Consensus 110 i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~ 189 (449)
T COG0439 110 IRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAE 189 (449)
T ss_pred HHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865456888999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecceee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v 191 (246)
..|+++.+++|+|+.+.+++.+++++|+.+.
T Consensus 190 ~~fg~~~v~iEk~i~~~rhievqv~gD~~g~ 220 (449)
T COG0439 190 AAFGNPRVYLEKFIEGPRHIEVQVLGDGHGN 220 (449)
T ss_pred HhcCCCcEEeeeeccCCceEEEEEEEcCccc
Confidence 8898888999999998889999999999863
No 4
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=2.6e-34 Score=253.27 Aligned_cols=190 Identities=44% Similarity=0.783 Sum_probs=174.6
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
+||++.|.++++.++||+++.+++.....+|++.+.+++++++.++|+|+|++|+.+|+..+++.+++.|++++|+++++
T Consensus 30 ~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~ 109 (499)
T PRK08654 30 AVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDV 109 (499)
T ss_pred EEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHH
Confidence 46888899999999999999998877778999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+..++||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.++++.....+.
T Consensus 110 i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~ 189 (499)
T PRK08654 110 IEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQ 189 (499)
T ss_pred HHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999763236889999999999999999999999999999999999999999998876665
Q ss_pred hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
..++++.+++|+|+.+++|+++++++|+.+
T Consensus 190 ~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G 219 (499)
T PRK08654 190 SAFGDSTVFIEKYLEKPRHIEIQILADKHG 219 (499)
T ss_pred HhCCCCeEEEEeCCCCCcEEEEEEEEcCCC
Confidence 566667899999999889999999998754
No 5
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=5.2e-33 Score=243.82 Aligned_cols=189 Identities=41% Similarity=0.721 Sum_probs=170.4
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
++|++.|.++++.++||+.+.+++...+.+|.+.+.++++|+++++|+|+|++|+++++..+++.+++.|++++|+++++
T Consensus 32 ~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~ 111 (445)
T PRK08462 32 AIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEV 111 (445)
T ss_pred EEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHH
Confidence 47889999999999999999998777777899999999999999999999999998999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+.+++||..++++|+++|||+|++++..+.+.+++.+++++++||+|+||.+|+||+|+++++|.+|+..++........
T Consensus 112 ~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~ 191 (445)
T PRK08462 112 MALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEAL 191 (445)
T ss_pred HHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999754457889999999999999999999999999999999999999999877655433
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
..++++.+++|+||++++|++++++++..
T Consensus 192 ~~~~~~~vlvEe~i~g~~e~~v~v~~~~~ 220 (445)
T PRK08462 192 SAFGDGTMYMEKFINNPRHIEVQILGDKH 220 (445)
T ss_pred hccCCCcEEEeccCCCCeEEEEEEEECCC
Confidence 34445679999999978899999998754
No 6
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=9.7e-33 Score=242.68 Aligned_cols=190 Identities=45% Similarity=0.758 Sum_probs=172.8
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
++|++.|.++++.++||+.+.++|...+.+|++.+.++++|+++++|+|+|++++++|+..+++.+++.|++++|+++++
T Consensus 33 ~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~a 112 (467)
T PRK12833 33 AACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQT 112 (467)
T ss_pred EEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHH
Confidence 36788899999999999999887766777899999999999999999999999999999988899999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+++++||..+|++|+++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|+++++|.+|+.+++......+.
T Consensus 113 i~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~ 192 (467)
T PRK12833 113 IRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQ 192 (467)
T ss_pred HHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999743467899999999999999999999999999999999999999999988766555
Q ss_pred hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
..+++..++||+|+++++|+++++++|+..
T Consensus 193 ~~~~~~~vlvEefi~~~~ei~v~v~~dg~~ 222 (467)
T PRK12833 193 AAFGDGGVYLERFIARARHIEVQILGDGER 222 (467)
T ss_pred HhcCCCcEEEEecCCCCEEEEEEEEeCCCc
Confidence 556667899999999889999999998764
No 7
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1e-32 Score=242.80 Aligned_cols=189 Identities=42% Similarity=0.694 Sum_probs=171.4
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
++|+|.|+.+++.++||+++.+|+... .+|++.+.++++|+++++|+|+|++|+++|+..+++.+++.|++++|+++++
T Consensus 30 ~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~ 108 (472)
T PRK07178 30 AIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEV 108 (472)
T ss_pred EEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHH
Confidence 478899999999999999999986544 6899999999999999999999999999999989999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+..++||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||+.|+||+|++++++.+|+.++++.+...+.
T Consensus 109 i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~ 188 (472)
T PRK07178 109 IRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEAT 188 (472)
T ss_pred HHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999753347889999999999999999999999999999999999999999988776655
Q ss_pred hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
..++...+++|+|+.+++|+++++++++.+
T Consensus 189 ~~~~~~~v~iE~~i~~~~eiev~v~~d~~G 218 (472)
T PRK07178 189 KAFGSAEVFLEKCIVNPKHIEVQILADSHG 218 (472)
T ss_pred HhcCCCCEEEEEcCCCCeEEEEEEEEECCC
Confidence 556567899999998899999999987654
No 8
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=6.2e-33 Score=243.11 Aligned_cols=208 Identities=39% Similarity=0.699 Sum_probs=190.2
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcC-CCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAA-QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE 79 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~ 79 (246)
|||+..|..+.|...||++|.++..-.+ .+|++++.+++++++.+.|+|+|++|+++|+.++++.|.+.|+.++||.++
T Consensus 35 AIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e 114 (1149)
T COG1038 35 AIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPE 114 (1149)
T ss_pred EEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHH
Confidence 6899999999999999999999876666 569999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
.+..+.||...+.+..++|+|+.|+....+.+.+++.++++..|||+++|...|+||+|++++.+.+++.+++.+...++
T Consensus 115 ~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEA 194 (1149)
T COG1038 115 VLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEA 194 (1149)
T ss_pred HHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887677888999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCceEEEecccCcceEEEEeeecceeec---chhhhhh----hhcCCCCCC
Q psy10619 160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ---TEKEFEY----AKLLPPKPK 208 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~---~~~~~~~----~~~~~~~~~ 208 (246)
+..|+++.+.||+|+.+.+++.|++++|.++.. .++.|+. ++.+.-+|.
T Consensus 195 kaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa 250 (1149)
T COG1038 195 KAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPA 250 (1149)
T ss_pred HHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeEEecCC
Confidence 999999999999999999999999999988732 4555544 355443333
No 9
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=5.3e-32 Score=237.51 Aligned_cols=188 Identities=49% Similarity=0.856 Sum_probs=168.2
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
++++.|+++++.++||+++.+++.....+|++.+.++++|+++++|+|+|++++.+|+..+++.+++.|++++|++++++
T Consensus 31 ~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~ 110 (449)
T TIGR00514 31 VHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESI 110 (449)
T ss_pred EEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHH
Confidence 45666889999999999999877667778999999999999999999999999888998888999999999999999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~ 161 (246)
.+++||..++++|+++|||+|+++...+.+.+++.+++++++||+|+||.+++||+|++++++.+|+..+++.+......
T Consensus 111 ~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~ 190 (449)
T TIGR00514 111 RLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKA 190 (449)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997533577899999999999999999999999999999999999999999887655444
Q ss_pred hcCCCceEEEecccCcceEEEEeeecce
Q psy10619 162 SFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.++...++||+||++++|+++++++++.
T Consensus 191 ~~~~~~vlvEe~i~g~~e~~v~v~~d~~ 218 (449)
T TIGR00514 191 AFGNDGVYIEKYIENPRHVEIQVLADKY 218 (449)
T ss_pred hCCCCCEEEEECCCCCeEEEEEEEEcCC
Confidence 4445789999999977899999998754
No 10
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=4.9e-32 Score=238.74 Aligned_cols=189 Identities=40% Similarity=0.739 Sum_probs=167.5
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
+||++.|.++++.++||+++.+++... .+|+|.+.++++|+++++|+|+|++++++|+..+++.+++.|++++|+++++
T Consensus 30 ~v~~~~d~~~~~~~~AD~~~~i~~~~~-~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~ 108 (478)
T PRK08463 30 AIYTEPDRECLHVKIADEAYRIGTDPI-KGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEV 108 (478)
T ss_pred EEECCCccCCcchhhcCEEEEcCCCch-hcccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHH
Confidence 367778888999999999999986543 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccc-cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGI-IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
+..++||..++++++++|||+|+++... ..+.+++.++++.+|||+|+||..|+||+|++++++.+|+..++......+
T Consensus 109 i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a 188 (478)
T PRK08463 109 IRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREA 188 (478)
T ss_pred HHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864311 257888988999999999999999999999999999999999998766555
Q ss_pred HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
...++++.++||+||.+++|+++++++++.+
T Consensus 189 ~~~~~~~~vlvEefI~~~~~iev~v~~d~~g 219 (478)
T PRK08463 189 LAYFNNDEVFMEKYVVNPRHIEFQILGDNYG 219 (478)
T ss_pred HHhcCCCcEEEEecCCCCeEEEEEEEEcCCC
Confidence 4445567899999999788999999988644
No 11
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=9.9e-32 Score=235.57 Aligned_cols=189 Identities=48% Similarity=0.837 Sum_probs=170.0
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
||++.|.++++..+||+++.+++..+..+|.+.+.++++|+++++|+|+|++++++|+..++..++..|++++|++++++
T Consensus 31 v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~ 110 (447)
T PRK05586 31 VYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETI 110 (447)
T ss_pred EcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHH
Confidence 56788899999999999999877666778999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~ 161 (246)
.+++||..++++|+++|||+|+++...+.+.+++.++++.++||+||||++|+||+|++++++.+|+.++++........
T Consensus 111 ~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~ 190 (447)
T PRK05586 111 ELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKA 190 (447)
T ss_pred HhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997433578899999889999999999999999999999999999999999887665544
Q ss_pred hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.++++.+++|+||++++|++++++++..+
T Consensus 191 ~~~~~~vivEe~i~g~~ei~v~v~~d~~G 219 (447)
T PRK05586 191 AFGDDSMYIEKFIENPKHIEFQILGDNYG 219 (447)
T ss_pred hcCCCeEEEEecCCCCeEEEEEEEECCCC
Confidence 45556899999999668999999988643
No 12
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=5e-31 Score=231.75 Aligned_cols=189 Identities=48% Similarity=0.821 Sum_probs=168.5
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
++++.|.++++.++||+.+.+++..+..+|.+.+.++++|+++++|+|+|++++.+++..++..+++.|++++|++++++
T Consensus 31 ~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~ 110 (451)
T PRK08591 31 VHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETI 110 (451)
T ss_pred EcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHH
Confidence 46677888899999999998866666678999999999999999999999998888988888999999999999999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~ 161 (246)
.+++||..++++|+++|||+|+++...+.+.+++.++++.++||+|+||+.++||+|+.+++|.+|+..+++.+......
T Consensus 111 ~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~ 190 (451)
T PRK08591 111 RLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKA 190 (451)
T ss_pred HHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997433578899999999999999999999999999999999999999999987665444
Q ss_pred hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.+++..++||+||++++|+++++++|+.+
T Consensus 191 ~~~~~~vlvEe~i~g~~e~~v~v~~d~~g 219 (451)
T PRK08591 191 AFGNPGVYMEKYLENPRHIEIQVLADGHG 219 (451)
T ss_pred hcCCCCEEEEeCCCCCcEEEEEEEEcCCC
Confidence 45567899999999778999999988753
No 13
>KOG0369|consensus
Probab=99.98 E-value=8.1e-32 Score=232.43 Aligned_cols=190 Identities=40% Similarity=0.742 Sum_probs=182.0
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcC-CCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAA-QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE 79 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~ 79 (246)
||||..|..+.|...||++|.++..-.+ ..|+.++.++++|+++++|+|+|++||++|+..+++.+...|+.++||+++
T Consensus 61 AiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspe 140 (1176)
T KOG0369|consen 61 AIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPE 140 (1176)
T ss_pred EEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHH
Confidence 6899999999999999999999865544 569999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
.+..+.||...|.+..++|+|+.|+.-..+++.+|+.+++++.|+|+|+|.++|+||+|++++++.++++++|++...++
T Consensus 141 Vi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA 220 (1176)
T KOG0369|consen 141 VIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEA 220 (1176)
T ss_pred HHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHH
Confidence 99999999999999999999999987778999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
...|++..++||+|++..+++.|++++|.++
T Consensus 221 ~aaFGnG~~FvEkF~ekPrHIEvQllgD~~G 251 (1176)
T KOG0369|consen 221 LAAFGNGTLFVEKFLEKPRHIEVQLLGDKHG 251 (1176)
T ss_pred HHhcCCceeeHHhhhcCcceeEEEEecccCC
Confidence 9999999999999999999999999999887
No 14
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.97 E-value=1.4e-30 Score=245.68 Aligned_cols=190 Identities=39% Similarity=0.738 Sum_probs=173.9
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCC---cCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCC
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPV---AAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPT 77 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~ 77 (246)
+||++.|..++|...||++|.+++.. ...+|+|.+.++++|+++++|+|+|++|+++|+..+++.+++.|++++|++
T Consensus 27 av~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps 106 (1143)
T TIGR01235 27 AIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPK 106 (1143)
T ss_pred EEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCC
Confidence 57899999999999999999998653 236799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHH
Q psy10619 78 AECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQ 157 (246)
Q Consensus 78 ~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~ 157 (246)
+++++.++||..++++++++|||+|+++...+.+.+++.++++++|||+||||..|+||+|++++++.+|+.+++..+..
T Consensus 107 ~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ 186 (1143)
T TIGR01235 107 AEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKS 186 (1143)
T ss_pred HHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999753456889999999999999999999999999999999999999999999877
Q ss_pred HHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 158 EAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 158 ~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
++...++++.++||+||++++|++|++++|+.+
T Consensus 187 ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G 219 (1143)
T TIGR01235 187 EAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHG 219 (1143)
T ss_pred HHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCC
Confidence 766667778899999999789999999998755
No 15
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.97 E-value=3.2e-30 Score=244.26 Aligned_cols=190 Identities=45% Similarity=0.786 Sum_probs=172.8
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCc-CCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE 79 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~ 79 (246)
+||++.|+++++..+||+++.+++... ..+|++.+.++++|+++++|+|+|++|+++|+..+++.+++.|++++|++++
T Consensus 33 av~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~e 112 (1146)
T PRK12999 33 AIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAE 112 (1146)
T ss_pred EEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHH
Confidence 478999999999999999999986533 3679999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
++..++||..+|++++++|||+|+++...+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.++++.+...+
T Consensus 113 ai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea 192 (1146)
T PRK12999 113 VLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREA 192 (1146)
T ss_pred HHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875325789999999999999999999999999999999999999999999887766
Q ss_pred HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
...+++..+++|+||++++|+++++++|+.+
T Consensus 193 ~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G 223 (1146)
T PRK12999 193 KAAFGNDEVYLEKYVENPRHIEVQILGDKHG 223 (1146)
T ss_pred HhhcCCCcEEEecCCCCCeEEEEEEEEECCC
Confidence 6666677899999999778999999998654
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.97 E-value=1.5e-29 Score=240.89 Aligned_cols=189 Identities=43% Similarity=0.762 Sum_probs=172.1
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
++++|.|..++++++||+.+.+++.....+|.+.+.++++|+++++|+|+|++++++|+..+++.+++.|++++|+++++
T Consensus 29 ~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea 108 (1201)
T TIGR02712 29 AVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQ 108 (1201)
T ss_pred EEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHH
Confidence 46788888999999999999998877778899999999999999999999999999999988999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
++++.||..+|++|+++|||+++++ ..+.+.+++.+++++++||+||||..++||+|+++|+|.+|+..+++.+.....
T Consensus 109 ~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~ 187 (1201)
T TIGR02712 109 IRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGE 187 (1201)
T ss_pred HHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998854 367899999999999999999999999999999999999999999998876555
Q ss_pred hhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
..+++..++||+||++++|+++++++|+.+
T Consensus 188 ~~f~~~~vlVEefI~g~~eveV~v~~Dg~g 217 (1201)
T TIGR02712 188 SFFGDAGVFLERFVENARHVEVQIFGDGKG 217 (1201)
T ss_pred HhcCCCcEEEEecCCCCEEEEEEEEECCCC
Confidence 555567899999999889999999998754
No 17
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.97 E-value=9e-29 Score=217.52 Aligned_cols=188 Identities=48% Similarity=0.836 Sum_probs=162.9
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
++++.+..+.+.++||+.+.+|+.....+|.+.+.++++|+++++|+|+|++++.+|+..+++.++..|++++|++.+++
T Consensus 31 ~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 110 (450)
T PRK06111 31 IYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADII 110 (450)
T ss_pred EechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHH
Confidence 45566777788889999999887666678889999999999999999999988778888888899999999999999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~ 161 (246)
.+++||..++++|+++|||+|++....+.+.+++.++++.++||+|+||++++||+|+.++++.+|+..+++........
T Consensus 111 ~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~ 190 (450)
T PRK06111 111 AKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAAN 190 (450)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996322468899998899999999999999999999999999999999999886543333
Q ss_pred hcCCCceEEEecccCcceEEEEeeecce
Q psy10619 162 SFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.+++..++||+|+++++|+++.++.+..
T Consensus 191 ~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 218 (450)
T PRK06111 191 FFGNGEMYIEKYIEDPRHIEIQLLADTH 218 (450)
T ss_pred hcCCCcEEEEcccCCCcEEEEEEEEcCC
Confidence 3345679999999966899999888753
No 18
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=1.3e-24 Score=188.88 Aligned_cols=170 Identities=20% Similarity=0.236 Sum_probs=140.7
Q ss_pred hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHH
Q psy10619 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLES 90 (246)
Q Consensus 11 ~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~ 90 (246)
++...+++.+.+|+ .++.|.+.++++|+++++|+|+++.+... ...+.+.|++.|++++|++..++++++||..+
T Consensus 32 ~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~~~id~vvvg~E~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~ 106 (434)
T PLN02257 32 AGIATSGDATCVPD----LDISDSAAVISFCRKWGVGLVVVGPEAPL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFM 106 (434)
T ss_pred HHHhhhccceeecC----CCCCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHH
Confidence 55555555544432 24567899999999999999998863211 13677888999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCce
Q psy10619 91 KKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRI 168 (246)
Q Consensus 91 ~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~ 168 (246)
|++|+++|||+|++. .+.+.+++.+++++++||+||||..+++|+||.++++.+|+.+++..++... .++ ...+
T Consensus 107 K~~l~~~GIptp~~~--~~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~--~fg~~~~~v 182 (434)
T PLN02257 107 KDLCDKYKIPTAKYE--TFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKG--AFGSAGSEV 182 (434)
T ss_pred HHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhh--hccCCCCeE
Confidence 999999999999965 6889999999999999999999999999999999999999999998875421 122 3579
Q ss_pred EEEecccCcceEEEEeeeccee
Q psy10619 169 LVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 169 lve~~i~~g~e~~v~v~~d~~~ 190 (246)
|||+||. |.|+++.++.|+..
T Consensus 183 lIEefi~-G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 183 VVEEFLD-GEEASFFALVDGEN 203 (434)
T ss_pred EEEECCC-CCEEEEEEEECCCc
Confidence 9999999 88999999888654
No 19
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.93 E-value=1.4e-25 Score=186.00 Aligned_cols=183 Identities=19% Similarity=0.231 Sum_probs=150.2
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeC-CCHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIG-PTAE 79 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g-~~~~ 79 (246)
.++||.+++++.+.+||+++.+|. +..+|. +.++++|+++++|+++|+..... .....+.|+..|++++. ++.+
T Consensus 26 i~~sh~~~~~~~~~~aD~~~~eP~--~~~~yv--~~~l~~C~~~~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~ 100 (329)
T PF15632_consen 26 IIASHRDPRAPILYAADEAYLEPA--DGEEYV--DWCLDFCKEHGIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAE 100 (329)
T ss_pred EEEEeCCCCchHHhcCceeeecCC--CHHHHH--HHHHHHHHHhCCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHH
Confidence 368999999999999999999876 555676 99999999999999999963211 23556788999999998 7799
Q ss_pred HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc---EEEEeccCCCCceeEEeC-CHHHHHHHHH--
Q psy10619 80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP---VMIKASAGGGGKGMRIAN-NDQEAIEGFK-- 153 (246)
Q Consensus 80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P---~vvKp~~g~g~~gv~~v~-~~~el~~~~~-- 153 (246)
+++++.||..+.+.++++|+|+|+++ .+++.+++..+++++++| ++|||+.|.||+|.++++ +.+++...+.
T Consensus 101 ~l~~~~dK~~~y~~~~~~~ipvp~~~--~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~ 178 (329)
T PF15632_consen 101 TLELADDKAAFYEFMEANGIPVPPYW--RVRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPD 178 (329)
T ss_pred HHHHHhhHHHHHHHHHhCCCCCCCEE--EeCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCC
Confidence 99999999999999999999999976 799999999999998777 999999999999999997 6666555443
Q ss_pred -------HHHHHHHhhcCCCceEEEecccCcceEEEEeeecceee
Q psy10619 154 -------LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191 (246)
Q Consensus 154 -------~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v 191 (246)
.+...........++||++|++ |.||||+++.+.+.+
T Consensus 179 ~~~i~~~~~~~~l~~~~~~~~llvMeyL~-G~EySVD~l~~~G~v 222 (329)
T PF15632_consen 179 SRRISLDELLAALQRSEEFPPLLVMEYLP-GPEYSVDCLADEGRV 222 (329)
T ss_pred cceeCHHHHHHHHhccCCCCCcEEecCCC-CCeEEEEEEecCCEE
Confidence 1111111111236899999999 999999999987654
No 20
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=1.2e-24 Score=188.81 Aligned_cols=153 Identities=21% Similarity=0.308 Sum_probs=134.8
Q ss_pred CCCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
.++.|.+.++++|+++++|+|+++. |.. .+++.+++.|++++|++..++.+++||..+|++|+++|||+|++.
T Consensus 52 ~~~~d~~~l~~~a~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~ 127 (426)
T PRK13789 52 FSILDKSSVQSFLKSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYK 127 (426)
T ss_pred cCcCCHHHHHHHHHHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeE
Confidence 4568999999999999999999886 444 456778899999999999999999999999999999999999964
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC--CCceEEEecccCcceEEEE
Q psy10619 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFIKNPRHIEIQ 183 (246)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lve~~i~~g~e~~v~ 183 (246)
.+++.+++.+++++++||+||||..+++|+||.++++.+|+.++++.++... .++ ...++||+||. |.|+++.
T Consensus 128 --~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~-G~E~Sv~ 202 (426)
T PRK13789 128 --TFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFME-GQEASIF 202 (426)
T ss_pred --eeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcC-CeEEEEE
Confidence 6889999999999999999999999999999999999999999999876432 222 24799999999 7999999
Q ss_pred eeeccee
Q psy10619 184 GTTYKFL 190 (246)
Q Consensus 184 v~~d~~~ 190 (246)
++.++..
T Consensus 203 ~~~dg~~ 209 (426)
T PRK13789 203 AISDGDS 209 (426)
T ss_pred EEECCCE
Confidence 9998754
No 21
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.93 E-value=1.6e-24 Score=186.75 Aligned_cols=172 Identities=20% Similarity=0.330 Sum_probs=143.6
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
+..|.++++++.++||+.+..+ +.|.+.+.++++++++|+|++.++... ......+++.|++++ ++++++
T Consensus 26 ~~~d~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e~v~--~~~~~~l~~~g~~~~-~~~~~~ 95 (380)
T TIGR01142 26 IAVDRYANAPAMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIEAIA--TDALFELEKEGYFVV-PNARAT 95 (380)
T ss_pred EEEeCCCCCchhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccCccC--HHHHHHHHhcCCeeC-CCHHHH
Confidence 4567788999999999998764 467899999999999999998875432 233456788898754 889999
Q ss_pred HHhcCHHHHHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 82 RGMGDKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 82 ~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
.+++||..+++++ +++|||+|+++ .+.+.+++.+++++++||+|+||+++++|+|+.+++|.+|+..+++.+.....
T Consensus 96 ~~~~dK~~~~~~~~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~ 173 (380)
T TIGR01142 96 KLTMNREGIRRLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGAR 173 (380)
T ss_pred HHhhCHHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcc
Confidence 9999999999985 89999999975 68899999888899999999999999999999999999999999988653211
Q ss_pred hhcCCCceEEEecccCcceEEEEeeec
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d 187 (246)
..++.+|||+||+++.|+++.++.+
T Consensus 174 --~~~~~~ivEe~i~~~~E~sv~~~~~ 198 (380)
T TIGR01142 174 --GGAGRVIVEEFIDFDYEITLLTVRH 198 (380)
T ss_pred --CCCCCEEEEEecCCCEEEEEEEEEc
Confidence 1235799999999768999988753
No 22
>PLN02735 carbamoyl-phosphate synthase
Probab=99.93 E-value=6.5e-25 Score=208.41 Aligned_cols=175 Identities=19% Similarity=0.301 Sum_probs=145.2
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHH---------c
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKE---------E 69 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~---------~ 69 (246)
|+++.+..+.+..+||+.|+++ ++.+.++++|+++++|+|+|.+|...... .+.+.|.+ .
T Consensus 614 v~~npetvstd~~~aD~~y~~p--------l~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~ 685 (1102)
T PLN02735 614 MNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNG 685 (1102)
T ss_pred EeCCCccccCCcccCCeEEEEe--------CCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcC
Confidence 3444444456688899999875 67899999999999999999886422111 12222332 3
Q ss_pred CCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHH
Q psy10619 70 GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149 (246)
Q Consensus 70 g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~ 149 (246)
|++++|++++++.++.||..++++|+++|||+|++. .+.+.+++.++++.+|||+||||.+++||+|+.+++|.+|+.
T Consensus 686 gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~--~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~ 763 (1102)
T PLN02735 686 NVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGG--IARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLK 763 (1102)
T ss_pred CeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCee--EeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHH
Confidence 899999999999999999999999999999999975 678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.+++.+... .+.+.++||+||++|+|++|++++|+.+
T Consensus 764 ~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G 800 (1102)
T PLN02735 764 TYLETAVEV----DPERPVLVDKYLSDATEIDVDALADSEG 800 (1102)
T ss_pred HHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECCCC
Confidence 999887643 2245799999998789999999998653
No 23
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.92 E-value=1.7e-24 Score=187.55 Aligned_cols=174 Identities=20% Similarity=0.316 Sum_probs=144.2
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
+..|.++++++..+||..+..+ +.|.+.++++++++++|+|++..+... ......+++.|++++ ++.+++
T Consensus 39 ~~~~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~~e~~~--~~~~~~l~~~g~~~~-~~~~a~ 108 (395)
T PRK09288 39 IAVDRYANAPAMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPEIEAIA--TDALVELEKEGFNVV-PTARAT 108 (395)
T ss_pred EEEeCCCCCchHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEeeCcCC--HHHHHHHHhcCCeeC-CCHHHH
Confidence 3456778888889999887764 357799999999999999998874321 233456677898865 889999
Q ss_pred HHhcCHHHHHHHHH-HhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 82 RGMGDKLESKKLAK-EAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 82 ~~~~dK~~~~~~l~-~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
.+++||..+|++|. ++|||+|++. .+++.+++.++++.++||+|+||..+++|+|+.+++|.+|+.++++.+.....
T Consensus 109 ~~~~dK~~~k~~l~~~~gip~p~~~--~~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~ 186 (395)
T PRK09288 109 RLTMNREGIRRLAAEELGLPTSPYR--FADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGR 186 (395)
T ss_pred HHHhCHHHHHHHHHHhCCCCCCCce--EECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhcc
Confidence 99999999999995 7999999965 78999999999999999999999999999999999999999999988654211
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.....+|||+||+++.|+++.++.++.
T Consensus 187 --~~~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 187 --GGAGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred --ccCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 113579999999988899999888755
No 24
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.92 E-value=4e-24 Score=186.40 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII 109 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 109 (246)
++.+.+.++++|+++++|+++++.+.. -...+.+.+++.|++++|++.+++.+++||..+|++|+++|||+|++. .+
T Consensus 47 ~~~d~~~l~~~~~~~~id~vi~~~e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~ 123 (420)
T PRK00885 47 DVTDIEALVAFAKEEGIDLTVVGPEAP-LVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYE--TF 123 (420)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCchH-HHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeE--Ee
Confidence 457889999999999999999875321 112456788899999999999999999999999999999999999965 68
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.+.+++.++++.++||+|+||..++||+|+++++|.+|+.++++.+............+|||+|++ |.|+++.++.++.
T Consensus 124 ~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 124 TDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 899999999999999999999999999999999999999999988764211001135799999999 8999999998876
Q ss_pred ee
Q psy10619 190 LI 191 (246)
Q Consensus 190 ~v 191 (246)
.+
T Consensus 203 ~~ 204 (420)
T PRK00885 203 NV 204 (420)
T ss_pred ce
Confidence 53
No 25
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.92 E-value=4.2e-24 Score=183.36 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=133.2
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII 109 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 109 (246)
++.|.+.++++|+++++|.|+++++.. -...+.+.|++.|++++|++.+++.+++||..+|++|+++|||+|++. .+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~-l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~--~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQP-LIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYK--EV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHH-HHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEE--EE
Confidence 457889999999999999999887431 112567789999999999999999999999999999999999999965 67
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.+.+++.++++.++||+||||..+++|+||.+++|.+|+..+++.++.. .. ...+|||+|+. |.|+++.++.++.
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~---~~-~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGD---EE-EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc---CC-CCeEEEEEccc-CceEEEEEEeeCC
Confidence 8899999999999999999999999999999999999999999886531 11 35799999999 7999999998876
Q ss_pred e
Q psy10619 190 L 190 (246)
Q Consensus 190 ~ 190 (246)
.
T Consensus 164 ~ 164 (379)
T PRK13790 164 L 164 (379)
T ss_pred E
Confidence 4
No 26
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.92 E-value=3e-24 Score=181.39 Aligned_cols=170 Identities=16% Similarity=0.229 Sum_probs=142.6
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
+++|.++++++...||+.+.+|... +.. ..+.++++++++++|+++|+.+... ......+.++..|++++++++++
T Consensus 29 i~~d~~~~~~~~~~~d~~~~~p~~~-~~~--~~~~l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~ 105 (326)
T PRK12767 29 IGADISELAPALYFADKFYVVPKVT-DPN--YIDRLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEV 105 (326)
T ss_pred EEECCCCcchhhHhccCcEecCCCC-Chh--HHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHH
Confidence 5678889999999999998886432 222 3489999999999999999863211 11234566788899999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHH--HHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE--IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE 158 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~--~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~ 158 (246)
+.+++||..++++|+++|+|+|+++ .+++.+++.+ +...++||+|+||.++.+|+|+++++|.+|+.+++...
T Consensus 106 ~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~--- 180 (326)
T PRK12767 106 IEICNDKWLTYEFLKENGIPTPKSY--LPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV--- 180 (326)
T ss_pred HHHHhcHHHHHHHHHHcCCCCCCEE--cccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC---
Confidence 9999999999999999999999975 6788888877 45678999999999999999999999999998887652
Q ss_pred HHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619 159 AAASFGDDRILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 159 ~~~~~~~~~~lve~~i~~g~e~~v~v~~d 187 (246)
..++||+||. |.|+++.++.+
T Consensus 181 -------~~~lvqeyi~-G~e~~v~~~~~ 201 (326)
T PRK12767 181 -------PNLIIQEFIE-GQEYTVDVLCD 201 (326)
T ss_pred -------CCeEEEeccC-CceEEEEEEEc
Confidence 4799999998 89999999887
No 27
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.92 E-value=4e-24 Score=203.39 Aligned_cols=227 Identities=19% Similarity=0.300 Sum_probs=170.9
Q ss_pred cCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 3 FPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 3 ~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
..+.+++. .....+|..+..+ .+.+.++++++++++|+|++.++.. ....++..+++.|++++|+++++
T Consensus 593 ~v~~npetvs~d~~~~D~ly~ep--------~~~e~vl~i~~~e~idgVI~~~gg~-~~~~la~~le~~Gi~i~G~s~~~ 663 (1050)
T TIGR01369 593 MINYNPETVSTDYDTSDRLYFEP--------LTFEDVMNIIELEKPEGVIVQFGGQ-TPLNLAKALEEAGVPILGTSPES 663 (1050)
T ss_pred EEecCCccccccccccceEEEec--------CCHHHHHHHHhhcCCCEEEEccCcH-hHHHHHHHHHHCCCcEECCCHHH
Confidence 34555554 3456788877653 4679999999999999999887542 12256778899999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+..+.||..++++|+++|||+|++. .+.+.+++.++++++|||+||||.++.||+|+.+++|.+|+..+++.+...
T Consensus 664 i~~~~DK~~f~~lL~~~GIp~P~~~--~v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~-- 739 (1050)
T TIGR01369 664 IDRAEDREKFSELLDELGIPQPKWK--TATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEV-- 739 (1050)
T ss_pred HHHHCCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHh--
Confidence 9999999999999999999999975 689999999999999999999999999999999999999999999987542
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecceeecchhhhhh---h--------hcCCCCC-CCCcccceeccccceeeeeee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEY---A--------KLLPPKP-KLDETKILHAPMPGLVKSVNC 228 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~~~~~~~~---~--------~~~~~~~-~~~~~~~l~sp~pg~i~~l~~ 228 (246)
....+++||+||++|.|++++++.++..+.....++. . ...|+.. .......++..+..++..+++
T Consensus 740 --s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi 817 (1050)
T TIGR01369 740 --SPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNV 817 (1050)
T ss_pred --CCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 2246799999999889999999998765432111110 0 1112211 111123455555556666666
Q ss_pred cCC----CeeeCCCeEEEEcc
Q psy10619 229 KVG----DQIMEGQELCVVGK 245 (246)
Q Consensus 229 ~~G----~~v~~g~~~~v~e~ 245 (246)
. | |..-.++.+.+||.
T Consensus 818 ~-G~~~vqf~~~~~~~yvIEv 837 (1050)
T TIGR01369 818 K-GLMNIQFAVKDGEVYVIEV 837 (1050)
T ss_pred c-ceEEEEEEEECCeEEEEEE
Confidence 4 5 44445677888885
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.91 E-value=3.6e-23 Score=176.45 Aligned_cols=164 Identities=21% Similarity=0.413 Sum_probs=136.8
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
+..|.++++++.++||+.+.. +|.|.+.+.+++++ +|++...++.. .......+++.|++++ ++.+++
T Consensus 26 ~~~d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e~i--~~~~l~~l~~~g~~~~-p~~~~~ 93 (352)
T TIGR01161 26 HVLDPDANSPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFEHV--DVEALEKLEARGVKLF-PSPDAL 93 (352)
T ss_pred EEECCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcCcC--CHHHHHHHHhCCCeEC-CCHHHH
Confidence 456788999999999998843 36788999999887 67765443221 2345677888888754 999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
.+++||..++++|+++|||+|+++ .+.+.+++.+++++++||+|+||..++ +|+|++++++.+|+.++++.+.
T Consensus 94 ~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~---- 167 (352)
T TIGR01161 94 AIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG---- 167 (352)
T ss_pred HHhcCHHHHHHHHHHcCCCCCCcc--EeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----
Confidence 999999999999999999999975 688999999999999999999999986 8999999999999998887642
Q ss_pred hhcCCCceEEEecccCcceEEEEeeec
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d 187 (246)
...+|+|+||+++.|+++.++++
T Consensus 168 ----~~~~lvEe~I~~~~E~sv~~~~~ 190 (352)
T TIGR01161 168 ----DRECIVEEFVPFERELSVIVARS 190 (352)
T ss_pred ----CCcEEEEecCCCCeEEEEEEEEc
Confidence 35799999999779999998764
No 29
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.91 E-value=3.9e-24 Score=204.12 Aligned_cols=227 Identities=18% Similarity=0.290 Sum_probs=169.1
Q ss_pred CcCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH
Q psy10619 2 LFPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE 79 (246)
Q Consensus 2 v~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~ 79 (246)
|..|.+|+. ....+||..|..+ .+.+.++++++++++|+|++.+|.... ..++..+++.|++++|++++
T Consensus 592 i~v~~npetvs~~~~~aD~~y~e~--------~~~e~v~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ 662 (1066)
T PRK05294 592 IMVNCNPETVSTDYDTSDRLYFEP--------LTLEDVLEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPD 662 (1066)
T ss_pred EEEeCCccccccccchhhheeecC--------CCHHHHHHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHH
Confidence 455667765 4466789888654 467999999999999999987654221 26678899999999999999
Q ss_pred HHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 80 CIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 80 ~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
++.++.||..++++|+++|||+|++. .+.+.+++.++++.++||+||||.++.||+|+.+++|.+|+..+++.....
T Consensus 663 ai~~~~DK~~~~~~L~~~GIp~P~~~--~~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~- 739 (1066)
T PRK05294 663 AIDLAEDRERFSKLLEKLGIPQPPNG--TATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV- 739 (1066)
T ss_pred HHHHhCCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh-
Confidence 99999999999999999999999976 688999999999999999999999999999999999999999999886542
Q ss_pred HhhcCCCceEEEecccCcc-eEEEEeeecceeecchhhhhh-----------hhcCCCCC-CCCcccceeccccceeeee
Q psy10619 160 AASFGDDRILVEKFIKNPR-HIEIQGTTYKFLIQTEKEFEY-----------AKLLPPKP-KLDETKILHAPMPGLVKSV 226 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~-e~~v~v~~d~~~v~~~~~~~~-----------~~~~~~~~-~~~~~~~l~sp~pg~i~~l 226 (246)
.....++||+||+ |. |++|++++++..+.....++. ....|+.. .......++..+..++..+
T Consensus 740 ---s~~~~vlIEefI~-G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aL 815 (1066)
T PRK05294 740 ---SPDHPVLIDKFLE-GAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALEL 815 (1066)
T ss_pred ---CCCCcEEEEecCC-CCEEEEEEEEecCCeEEEeeeEEeeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1246799999999 66 999999998764322111110 01112211 1111133444455555556
Q ss_pred eecCC----CeeeCCCeEEEEcc
Q psy10619 227 NCKVG----DQIMEGQELCVVGK 245 (246)
Q Consensus 227 ~~~~G----~~v~~g~~~~v~e~ 245 (246)
++. | |.+-.++.+.|||.
T Consensus 816 g~~-G~~~vqf~~~~~~~yViEi 837 (1066)
T PRK05294 816 NVV-GLMNVQFAVKDDEVYVIEV 837 (1066)
T ss_pred CCe-eeEEEEEEEECCeEEEEEE
Confidence 664 4 33445667888885
No 30
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.91 E-value=1.6e-23 Score=199.38 Aligned_cols=229 Identities=21% Similarity=0.281 Sum_probs=172.3
Q ss_pred cCCCCCC--ChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-C----CCHHHHHHHHHcCCeEeC
Q psy10619 3 FPDPCVF--QRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-S----ENASFVSRLKEEGVVFIG 75 (246)
Q Consensus 3 ~~d~~~~--~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~----e~~~~~~~~~~~g~~~~g 75 (246)
..+.+++ ..+..+||+.|..| .+.+.+.++++++++|+|+|++|+. + ........+++.|++++|
T Consensus 45 ~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G 116 (1050)
T TIGR01369 45 LVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLG 116 (1050)
T ss_pred EEecchhhccCChhcCCEEEECC--------CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEEC
Confidence 3445554 46677899999875 4678999999999999999987641 1 112335678999999999
Q ss_pred CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHH
Q psy10619 76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLS 155 (246)
Q Consensus 76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~ 155 (246)
++++++.+++||..++++|+++|+|+|++. .+++.+++.++++++|||+||||+.+.||+|+.+++|.+|+..++...
T Consensus 117 ~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~ 194 (1050)
T TIGR01369 117 TPVEAIKKAEDRELFREAMKEIGEPVPESE--IAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERA 194 (1050)
T ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHH
Confidence 999999999999999999999999999975 789999999999999999999999999999999999999999988776
Q ss_pred HHHHHhhcCCCceEEEecccCcceEEEEeeeccee--ec--chhhhh-----hhh--cCCCCCCCC--cccceeccccce
Q psy10619 156 SQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL--IQ--TEKEFE-----YAK--LLPPKPKLD--ETKILHAPMPGL 222 (246)
Q Consensus 156 ~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~--v~--~~~~~~-----~~~--~~~~~~~~~--~~~~l~sp~pg~ 222 (246)
... .....+|||+|++|.+|+++.+++|..+ +. ....+. ... ...|....+ ....++..+..+
T Consensus 195 ~~~----s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i 270 (1050)
T TIGR01369 195 LSA----SPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKI 270 (1050)
T ss_pred Hhc----CCCCcEEEEEcccCceEEEEEEEEeCCCCEEEEeeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHH
Confidence 542 1125799999999558999999988543 11 100110 000 011222111 224566677778
Q ss_pred eeeeeecCCCee----e-CCCeEEEEcc
Q psy10619 223 VKSVNCKVGDQI----M-EGQELCVVGK 245 (246)
Q Consensus 223 i~~l~~~~G~~v----~-~g~~~~v~e~ 245 (246)
+.++++.-|..| . .++.+.++|.
T Consensus 271 ~~~Lg~~G~~~Vef~l~~~~g~~~viEi 298 (1050)
T TIGR01369 271 IRELGIEGGCNVQFALNPDSGRYYVIEV 298 (1050)
T ss_pred HHHcCCcceeEEEEEEECCCCcEEEEEe
Confidence 888888877555 2 3567888885
No 31
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.91 E-value=4.3e-23 Score=180.22 Aligned_cols=157 Identities=20% Similarity=0.333 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII 109 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 109 (246)
++.|.+.++++|+++++|+++++.+.. -...+++.+++.|++++|++.+++.+++||..++++|+++|||+|++. .+
T Consensus 49 ~~~d~~~l~~~~~~~~id~vi~~~e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~ 125 (423)
T TIGR00877 49 SITDIEALVEFAKKKKIDLAVIGPEAP-LVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VF 125 (423)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCchH-HHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeE--EE
Confidence 346889999999999999999875321 012467788999999999999999999999999999999999999965 68
Q ss_pred CCHHHHHHHHHHhCCc-EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619 110 RDADHCVEIARDIGYP-VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~P-~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
.+.+++.++++.++|| +|+||..++||+|+.+++|.+|+.+++..+...... .....+|||+|++ |.|+++.++.++
T Consensus 126 ~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g-~~~~~~lvEe~i~-G~E~sv~~~~dg 203 (423)
T TIGR00877 126 TDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFG-DAGERVVIEEFLD-GEEVSLLAFVDG 203 (423)
T ss_pred CCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcC-CCCCeEEEEECcc-CceEEEEEEEcC
Confidence 8999999999999999 999999999999999999999999999887653200 0135799999999 799999999887
Q ss_pred eee
Q psy10619 189 FLI 191 (246)
Q Consensus 189 ~~v 191 (246)
..+
T Consensus 204 ~~~ 206 (423)
T TIGR00877 204 KTV 206 (423)
T ss_pred CeE
Confidence 653
No 32
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.91 E-value=9.6e-24 Score=175.65 Aligned_cols=227 Identities=25% Similarity=0.330 Sum_probs=173.9
Q ss_pred CCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCH--HH--HHHHHHcCCeEeCCCH
Q psy10619 4 PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENA--SF--VSRLKEEGVVFIGPTA 78 (246)
Q Consensus 4 ~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~--~~--~~~~~~~g~~~~g~~~ 78 (246)
+...+......+||..|+.| .+.+.+..+++++++|+++|++|... .+. .+ ...|++.|++++|++.
T Consensus 37 snpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~ 108 (400)
T COG0458 37 SNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDP 108 (400)
T ss_pred CCCccccCCchhcceeeeec--------CcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCH
Confidence 33334445558999999987 57899999999999999999987532 222 22 2245677999999999
Q ss_pred HHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHH
Q psy10619 79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQE 158 (246)
Q Consensus 79 ~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~ 158 (246)
+++..+.||.+++++|+++|+|+| +. ...+.+++.+....+|||+||||.++.||.|..+++|.+|+.+........
T Consensus 109 eaI~iaeDr~~fke~m~eigi~~P-~~--~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~ 185 (400)
T COG0458 109 EAIEIAEDKKLFKEAMREIGIPVP-SR--IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRA 185 (400)
T ss_pred HHhhhhhhHHHHHHHHHHcCCCCC-cc--ccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhcccc
Confidence 999999999999999999999999 33 678999999999999999999999999999999999999999988876543
Q ss_pred HHhhcCCCceEEEecccCcceEEEEeeecceeec----chhhhhh-------hhcCCCCCCCCcc--cceeccccceeee
Q psy10619 159 AAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQ----TEKEFEY-------AKLLPPKPKLDET--KILHAPMPGLVKS 225 (246)
Q Consensus 159 ~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~----~~~~~~~-------~~~~~~~~~~~~~--~~l~sp~pg~i~~ 225 (246)
+ +..++|+|+++.|+.|+...+++|..... ....++. ...+.|++..... +.++..+...++.
T Consensus 186 s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~ 261 (400)
T COG0458 186 S----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIRE 261 (400)
T ss_pred C----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 1 24689999999989999999999887621 1111111 1223355544333 6678788888888
Q ss_pred eeecCCCeee----CC-CeEEEEcc
Q psy10619 226 VNCKVGDQIM----EG-QELCVVGK 245 (246)
Q Consensus 226 l~~~~G~~v~----~g-~~~~v~e~ 245 (246)
+++.-|..++ .+ -.+.+||.
T Consensus 262 igi~G~~niQ~av~~~~~~~~viEv 286 (400)
T COG0458 262 IGIEGGCNIQFAVDPGGGELYVIEI 286 (400)
T ss_pred hcccCCCceeEEEcCCCceEEEEEe
Confidence 8888554432 33 26777774
No 33
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.91 E-value=9.5e-24 Score=200.98 Aligned_cols=171 Identities=19% Similarity=0.320 Sum_probs=146.6
Q ss_pred cCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 3 FPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 3 ~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
..+.+|++ .....||..|..| .+.+.++++++++++|+|++.++.. ....++..+++.|++++|+++++
T Consensus 594 ~vn~npetvs~~~~~aD~~y~ep--------~~~e~vl~I~~~e~~dgVI~~~g~~-~~~~la~~le~~Gi~ilG~s~e~ 664 (1068)
T PRK12815 594 MINNNPETVSTDYDTADRLYFEP--------LTLEDVLNVAEAENIKGVIVQFGGQ-TAINLAKGLEEAGLTILGTSPDT 664 (1068)
T ss_pred EEeCCccccccccccCceEEEcc--------CCHHHHHHHHhhcCCCEEEEecCcH-HHHHHHHHHHHCCCeEECCcHHH
Confidence 44556654 4556799988764 4679999999999999999987542 12356778899999999999999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+..+.||..++++|+++|||+|++. .+.+.+++.++++.+|||+|+||.++.||+|+.+++|.+|++.+++...
T Consensus 665 i~~~~DK~~f~~ll~~~GIp~P~~~--~~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~---- 738 (1068)
T PRK12815 665 IDRLEDRDRFYQLLDELGLPHVPGL--TATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA---- 738 (1068)
T ss_pred HHHHcCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh----
Confidence 9999999999999999999999976 6899999999999999999999999999999999999999999988761
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecceee
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v 191 (246)
....++|||+||+ |.|++++++.|+..+
T Consensus 739 --s~~~~vlIeefI~-G~E~~Vd~i~dg~~v 766 (1068)
T PRK12815 739 --SQLYPILIDQFID-GKEYEVDAISDGEDV 766 (1068)
T ss_pred --cCCCCEEEEEeec-CceEEEEEEEcCCce
Confidence 1256799999998 889999999987654
No 34
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.91 E-value=3.2e-23 Score=180.41 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
..+.+.++++|+++++|+|+++.+... ...+...|++.|++++|++.+++.+++||..+|++|+++|||+|+++. .+.
T Consensus 51 ~~d~e~l~~~~~~~~id~Vi~~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~-~~~ 128 (435)
T PRK06395 51 EKDYDLIEDFALKNNVDIVFVGPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFN-ACF 128 (435)
T ss_pred CCCHHHHHHHHHHhCCCEEEECCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccc-eeC
Confidence 468899999999999999999874311 124566788899999999999999999999999999999999986542 455
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCH-HHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 111 DADHCVEIARDIGYPVMIKASAGGGGKGMRIANND-QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 111 ~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+.+++..++..++||+||||.+++||+||.++++. +++++++..+.... . ....+|||||+. |.|++++++.|+.
T Consensus 129 ~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~-G~E~Svd~~~dg~ 204 (435)
T PRK06395 129 SEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMT-GEEFSLQAFSDGK 204 (435)
T ss_pred ChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecC-CceEEEEEEEcCC
Confidence 67788777788899999999999999999999543 23344443332210 1 135799999999 8899999999887
Q ss_pred eec
Q psy10619 190 LIQ 192 (246)
Q Consensus 190 ~v~ 192 (246)
.+.
T Consensus 205 ~~~ 207 (435)
T PRK06395 205 HLS 207 (435)
T ss_pred eEE
Confidence 753
No 35
>PLN02735 carbamoyl-phosphate synthase
Probab=99.91 E-value=3.8e-23 Score=196.48 Aligned_cols=230 Identities=21% Similarity=0.283 Sum_probs=170.0
Q ss_pred CcCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCHH--H--HHHHHHcCCeEe
Q psy10619 2 LFPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENAS--F--VSRLKEEGVVFI 74 (246)
Q Consensus 2 v~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~~--~--~~~~~~~g~~~~ 74 (246)
|..|.+++. .+..+||+.|+.| .+.+.+.++++++++|+|+|++|.. +.+.. + ...|+..|++++
T Consensus 61 i~vd~np~t~~~~~~~aD~~yi~p--------~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~ 132 (1102)
T PLN02735 61 VLINSNPATIMTDPETADRTYIAP--------MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELI 132 (1102)
T ss_pred EEEeCCcccccCChhhCcEEEeCC--------CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEE
Confidence 345556643 3446799988765 4678899999999999999987532 22221 1 356889999999
Q ss_pred CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC-CcEEEEeccCCCCceeEEeCCHHHHHHHHH
Q psy10619 75 GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAGGGGKGMRIANNDQEAIEGFK 153 (246)
Q Consensus 75 g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~g~g~~gv~~v~~~~el~~~~~ 153 (246)
|++++++.+++||..++++|+++|+|+|++. .+.+.+++.++++++| ||+||||+++.||+|+.+++|.+|+..++.
T Consensus 133 G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~ 210 (1102)
T PLN02735 133 GAKLDAIKKAEDRELFKQAMEKIGLKTPPSG--IATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICK 210 (1102)
T ss_pred CCCHHHHHHhcCHHHHHHHHHHCCCCCCCee--EeCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHH
Confidence 9999999999999999999999999999975 6888999988899998 999999999999999999999999999998
Q ss_pred HHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee-e---cchhhhh---hh--h--cCCCCCCCC--cccceecccc
Q psy10619 154 LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL-I---QTEKEFE---YA--K--LLPPKPKLD--ETKILHAPMP 220 (246)
Q Consensus 154 ~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~-v---~~~~~~~---~~--~--~~~~~~~~~--~~~~l~sp~p 220 (246)
..... ...+.+|||+|+.|.+|+++++++|..+ + ......+ ++ . .+.|.+..+ ....++..+-
T Consensus 211 ~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ 286 (1102)
T PLN02735 211 AGLAA----SITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSV 286 (1102)
T ss_pred HHHhc----CCCCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 76532 1257899999999558999999987432 1 1110011 00 0 011222222 2256777777
Q ss_pred ceeeeeeecCCC-e----ee-CCCeEEEEcc
Q psy10619 221 GLVKSVNCKVGD-Q----IM-EGQELCVVGK 245 (246)
Q Consensus 221 g~i~~l~~~~G~-~----v~-~g~~~~v~e~ 245 (246)
.++..++++.|- . +. ++..+.+||.
T Consensus 287 ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEV 317 (1102)
T PLN02735 287 AIIREIGVECGGSNVQFAVNPVDGEVMIIEM 317 (1102)
T ss_pred HHHHHhCCCcCceEEEEEEECCCCcEEEEEe
Confidence 888888886553 2 33 3567888885
No 36
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.91 E-value=1.5e-22 Score=177.57 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=125.1
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcc
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNG 107 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~ 107 (246)
..|.+.++++|+++++|+|+++. |.+ .+++.|++.|++++|++.+++.+++||..+|++|+++|||+|+.+ .
T Consensus 55 ~~d~~~l~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~ 129 (486)
T PRK05784 55 INSPEEVKKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-K 129 (486)
T ss_pred CCCHHHHHHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-e
Confidence 46789999999999999999885 444 567889999999999999999999999999999999999997432 2
Q ss_pred ccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHH-----HHHHH----HHHHHHHHhhcC--CCceEEEecccC
Q psy10619 108 IIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQE-----AIEGF----KLSSQEAAASFG--DDRILVEKFIKN 176 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~e-----l~~~~----~~~~~~~~~~~~--~~~~lve~~i~~ 176 (246)
.+++.+++.++++.. +|+||||..++||+||.++++.++ +.+++ +.++... ..++ +..+|||||+.
T Consensus 130 ~~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~-~~~g~~~~~VlIEEfL~- 206 (486)
T PRK05784 130 VFYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS-AYYKDVEPKILVEEKVD- 206 (486)
T ss_pred EeCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH-hhccCCCCeEEEEEccC-
Confidence 678899998888655 699999999999999999999873 44444 3332210 1122 35799999999
Q ss_pred cceEEEEeeecceeec
Q psy10619 177 PRHIEIQGTTYKFLIQ 192 (246)
Q Consensus 177 g~e~~v~v~~d~~~v~ 192 (246)
|.|++|.++.|+..+.
T Consensus 207 G~E~SV~al~dG~~~~ 222 (486)
T PRK05784 207 GVEYTLQVLTDGETVI 222 (486)
T ss_pred CeEEEEEEEECCCeEE
Confidence 8999999999876543
No 37
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.90 E-value=1.6e-22 Score=168.88 Aligned_cols=180 Identities=19% Similarity=0.287 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI 108 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 108 (246)
.+.+.|.+++++.++|.++++. |.+ .+.+.|++.|+++|||+.+++++-.+|..+|++|+++|||++.+ ..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGP----E~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~ 123 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGP----EAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EV 123 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECC----cHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cc
Confidence 4689999999999999999997 443 56889999999999999999999999999999999999999885 47
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC--CceEEEecccCcceEEEEeee
Q psy10619 109 IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKFIKNPRHIEIQGTT 186 (246)
Q Consensus 109 ~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~--~~~lve~~i~~g~e~~v~v~~ 186 (246)
+++.+++.+++++.+.|+||||..-.+|+||.++.+.++..++++.++... .|++ ..++||+|+. |.|+|+.++.
T Consensus 124 f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~--~fg~~g~~VVIEEfL~-GeE~S~~a~~ 200 (428)
T COG0151 124 FTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGN--AFGSAGARVVIEEFLD-GEEFSLQAFV 200 (428)
T ss_pred cCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhc--cccCCCCcEEEEeccc-ceEEEEEEEE
Confidence 889999999999999999999999999999999999999999999887642 2322 4599999999 9999999999
Q ss_pred cceeec-chhhhhhhhcCCCCCCCCccc-ceecccc
Q psy10619 187 YKFLIQ-TEKEFEYAKLLPPKPKLDETK-ILHAPMP 220 (246)
Q Consensus 187 d~~~v~-~~~~~~~~~~~~~~~~~~~~~-~l~sp~p 220 (246)
|+..+. ++...++.+....+..+.+.+ .-.||.|
T Consensus 201 DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P 236 (428)
T COG0151 201 DGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAP 236 (428)
T ss_pred cCCeEEECccccccccccCCCCCCCCCCCCCCCCCC
Confidence 998864 555566655555555555443 2445554
No 38
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.90 E-value=1.1e-22 Score=174.39 Aligned_cols=165 Identities=20% Similarity=0.337 Sum_probs=136.0
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
+..|.++++++..+||+.+.. +|.|.+.+.++++. +|+|...++. ......+.+++. . .++++++++
T Consensus 29 ~~~d~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a~~--~dvit~e~e~--i~~~~l~~l~~~-~-~~~p~~~~~ 95 (372)
T PRK06019 29 IVLDPDPDSPAAQVADEVIVA-------DYDDVAALRELAEQ--CDVITYEFEN--VPAEALDALAAR-V-PVPPGPDAL 95 (372)
T ss_pred EEEeCCCCCchhHhCceEEec-------CCCCHHHHHHHHhc--CCEEEeCcCC--CCHHHHHHHhcC-C-eeCcCHHHH
Confidence 345788899999999998875 36788999999884 8887644322 223444556555 3 356999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
.+++||..+|++|+++|||+|++. .+.+.+++.++.+++|||+|+||+.++ +|+|++++++.+|+..++..+
T Consensus 96 ~~~~dK~~~k~~l~~~Gip~p~~~--~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~----- 168 (372)
T PRK06019 96 AIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL----- 168 (372)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc-----
Confidence 999999999999999999999975 689999999989999999999999864 899999999999999998764
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+...++||+||++++|+++.+.++..
T Consensus 169 ---~~~~~ivEe~I~~~~E~sv~~~~~~~ 194 (372)
T PRK06019 169 ---GSVPCILEEFVPFEREVSVIVARGRD 194 (372)
T ss_pred ---CCCCEEEEecCCCCeEEEEEEEECCC
Confidence 24689999999988999999887643
No 39
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.90 E-value=6.2e-23 Score=170.81 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=118.0
Q ss_pred HHHHHHHhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHH
Q psy10619 37 IIDAIRQTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC 115 (246)
Q Consensus 37 l~~~~~~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~ 115 (246)
++..+.+.++|++++.. |...|+..++..|+..|+|++|+++.++.+|+||..+|++|+++|||+|++. .+.+..
T Consensus 48 ~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~~-- 123 (296)
T PRK14569 48 LVAKLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDKL-- 123 (296)
T ss_pred HHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchhh--
Confidence 34445566899998875 5677888999999999999999999999999999999999999999999964 343321
Q ss_pred HHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619 116 VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 116 ~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
.....++||+||||.++++|.|+.+++|.+|+..+++.+.. .+.+|||+||+ |+|++|.+++++
T Consensus 124 -~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~-G~E~tv~vl~~~ 187 (296)
T PRK14569 124 -VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVT-GKEITVAIVNDE 187 (296)
T ss_pred -hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccc-cEEEEEEEECCc
Confidence 23467899999999999999999999999999999887532 25799999999 899999999765
No 40
>KOG0368|consensus
Probab=99.90 E-value=2.3e-23 Score=191.87 Aligned_cols=182 Identities=36% Similarity=0.592 Sum_probs=168.5
Q ss_pred CCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHh
Q psy10619 5 DPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGM 84 (246)
Q Consensus 5 d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~ 84 (246)
|...|+.+++|||.++.+|++++...|.+.+.+++++.+.+.|+|++++|..+||+.+.+.|.+.|+.++||+..++..+
T Consensus 97 dl~anaeyIrmADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sL 176 (2196)
T KOG0368|consen 97 DLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRAL 176 (2196)
T ss_pred HHHhhHHHhhhhhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhCCCCCCCC------------------------ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619 85 GDKLESKKLAKEAGVNIIPGF------------------------NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140 (246)
Q Consensus 85 ~dK~~~~~~l~~~gip~p~~~------------------------~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~ 140 (246)
.||....-..+.+|+|+.+|. .+++.+.+|..++++.+|||+++|...|+||+|++
T Consensus 177 GDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIR 256 (2196)
T KOG0368|consen 177 GDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIR 256 (2196)
T ss_pred cchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCccee
Confidence 999999999999999998871 12367788999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.|++.+++...|++...+ .+..++++.+...+.+++.|+++.|.++
T Consensus 257 kv~n~ddF~~lf~qv~~E----vPGSPIFlMK~a~~ARHlEVQlLaDqYG 302 (2196)
T KOG0368|consen 257 KVENEDDFKALFKQVQNE----VPGSPIFLMKLADQARHLEVQLLADQYG 302 (2196)
T ss_pred eccchHHHHHHHHHHHhh----CCCCceeeeecccCcceeeeehhhhhcC
Confidence 999999999999998765 4578899999999899999999999887
No 41
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.90 E-value=7.8e-23 Score=173.57 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=118.6
Q ss_pred HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619 43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121 (246)
Q Consensus 43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~ 121 (246)
..++|++++. +|..+|++.++.+|+..|+|++|++..++.+|+||..++++|+++|||+|+++ .+.+.++.. ...
T Consensus 88 ~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~--~~~ 163 (343)
T PRK14568 88 TIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--TVTADERPD--AAT 163 (343)
T ss_pred cccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEECCchhh--hhh
Confidence 3579999988 67788999999999999999999999999999999999999999999999975 455444332 356
Q ss_pred hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 122 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
++||+||||+++++|.|+.+++|.+|+.++++.+.. + +..+|||+||+ |+|+++.+++++.
T Consensus 164 l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~-----~-~~~vlVEe~I~-G~E~sv~vl~~~~ 224 (343)
T PRK14568 164 LTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ-----Y-DSKVLIEEAVV-GSEVGCAVLGNGA 224 (343)
T ss_pred cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEECCcC-CEEEEEEEEcCCC
Confidence 899999999999999999999999999999987653 2 46799999999 8999999998754
No 42
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.89 E-value=2.8e-22 Score=179.48 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=140.2
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
+..|.++++++..+||+.+.. +|.|.+.+.+++++ +|++....+. -+....+.+++.|+++ +++++++
T Consensus 49 i~ld~~~~apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvIt~e~e~--v~~~~l~~le~~gi~v-~ps~~al 116 (577)
T PLN02948 49 KVLDPLEDCPASSVAARHVVG-------SFDDRAAVREFAKR--CDVLTVEIEH--VDVDTLEALEKQGVDV-QPKSSTI 116 (577)
T ss_pred EEEeCCCCCchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEEEEecCC--CCHHHHHHHHhcCCcc-CCCHHHH
Confidence 455788899999999998864 35788999999988 7877654322 2234557889999875 5999999
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
.+++||..+|++|+++|||+|+++ .+.+.+++.++.+++|||+|+||+.++ +|+|++++++.+|+..+++.+..
T Consensus 117 ~i~~DK~~~K~~l~~~GIptp~~~--~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~--- 191 (577)
T PLN02948 117 RIIQDKYAQKVHFSKHGIPLPEFM--EIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGG--- 191 (577)
T ss_pred HHhcCHHHHHHHHHHCCcCCCCeE--EeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhC---
Confidence 999999999999999999999975 678899998888999999999999877 79999999999999999887542
Q ss_pred hhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 161 ASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 ~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+ +..+|||+||++.+|++|.+.++..
T Consensus 192 --~-~~~vlvEefI~~~~EisV~v~r~~~ 217 (577)
T PLN02948 192 --F-ERGLYAEKWAPFVKELAVMVARSRD 217 (577)
T ss_pred --C-CCcEEEEecCCCCeEEEEEEEECCC
Confidence 2 4679999999966999999997543
No 43
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.89 E-value=1.3e-22 Score=172.49 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=117.1
Q ss_pred hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC------CHHHHH
Q psy10619 44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR------DADHCV 116 (246)
Q Consensus 44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------~~~~~~ 116 (246)
.++|++++. +|..+|++.++..|+.+|+|++|++..++.+++||..++++|+++|||+|+++ .+. +.+++.
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~~~~~~ 164 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNSPRKTL 164 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccChHHHH
Confidence 468888877 57788999999999999999999999999999999999999999999999975 332 334444
Q ss_pred HHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619 117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 117 ~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d 187 (246)
...++++||+||||+++++|.|+.+++|.+|+..+++.++. + ++.+|||+||+ |+|++|.++++
T Consensus 165 ~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~-----~-~~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 165 LKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE-----S-DSKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred HHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCCEEEEcCcc-cEEEEEEEEeC
Confidence 45667899999999999999999999999999999988753 1 46799999999 89999999974
No 44
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.89 E-value=2.3e-22 Score=192.09 Aligned_cols=229 Identities=21% Similarity=0.261 Sum_probs=168.1
Q ss_pred cCCCCCCC--hhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCH--HH--HHHHHHcCCeEeC
Q psy10619 3 FPDPCVFQ--RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENA--SF--VSRLKEEGVVFIG 75 (246)
Q Consensus 3 ~~d~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~--~~--~~~~~~~g~~~~g 75 (246)
..|.++.. ....+||+.|..| .+.+.+.++++++++|+|+|+.+.. ..+. .+ ...|++.|++++|
T Consensus 46 ~v~~~p~~~~~~~~~aD~~y~~p--------~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g 117 (1066)
T PRK05294 46 LVNSNPATIMTDPEMADATYIEP--------ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIG 117 (1066)
T ss_pred EEcCCcccccCCcccCCEEEECC--------CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEEC
Confidence 44555543 4556899988865 4679999999999999999987542 1111 11 3468899999999
Q ss_pred CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHH
Q psy10619 76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLS 155 (246)
Q Consensus 76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~ 155 (246)
++++++..++||..++++|+++|+|+|++. .+++.+++.++++++|||+||||+.|.||+|+.++++.+|+.++++..
T Consensus 118 ~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~ 195 (1066)
T PRK05294 118 AKLEAIDKAEDRELFKEAMKKIGLPVPRSG--IAHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERG 195 (1066)
T ss_pred CCHHHHHHhcCHHHHHHHHHHCCcCCCCee--eeCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHH
Confidence 999999999999999999999999999975 789999999999999999999999999999999999999999998865
Q ss_pred HHHHHhhcCCCceEEEecccCcceEEEEeeeccee-ec-ch--hhhhh-----hh--cCCCCCCCC--cccceeccccce
Q psy10619 156 SQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL-IQ-TE--KEFEY-----AK--LLPPKPKLD--ETKILHAPMPGL 222 (246)
Q Consensus 156 ~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~-v~-~~--~~~~~-----~~--~~~~~~~~~--~~~~l~sp~pg~ 222 (246)
... .....+|||+||+|.+|+++.+++|..+ +. .. ...+. .. ...|....+ ....++..+-.+
T Consensus 196 ~~~----s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki 271 (1066)
T PRK05294 196 LDL----SPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAI 271 (1066)
T ss_pred Hhh----CCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 432 1135799999999557999999988654 11 10 00100 00 011221111 223466666677
Q ss_pred eeeeeecCCCe-----ee-CCCeEEEEcc
Q psy10619 223 VKSVNCKVGDQ-----IM-EGQELCVVGK 245 (246)
Q Consensus 223 i~~l~~~~G~~-----v~-~g~~~~v~e~ 245 (246)
+.++++..|-. +. .+..+.++|.
T Consensus 272 ~~aLg~~~G~~~vef~~~~~~g~~~viEi 300 (1066)
T PRK05294 272 IREIGVETGGCNVQFALNPKDGRYIVIEM 300 (1066)
T ss_pred HHHcCCccCceEEEEEEECCCCcEEEEEe
Confidence 77788875532 23 4567888885
No 45
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.89 E-value=4e-22 Score=189.95 Aligned_cols=229 Identities=20% Similarity=0.265 Sum_probs=166.3
Q ss_pred CcCCCCCCChhh--hccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCC-CCHH--H--HHHHHHcCCeEe
Q psy10619 2 LFPDPCVFQRHV--KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLS-ENAS--F--VSRLKEEGVVFI 74 (246)
Q Consensus 2 v~~d~~~~~~~~--~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~-e~~~--~--~~~~~~~g~~~~ 74 (246)
|..+.++..... .+||..|..| .+.+.+.++++++++|+|+|+.|+.. .+.. + ...|++.|++++
T Consensus 45 i~v~~np~~~~~d~~~ad~~y~ep--------~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~ 116 (1068)
T PRK12815 45 VLVNPNPATIMTDPAPADTVYFEP--------LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELL 116 (1068)
T ss_pred EEEeCCcchhhcCcccCCeeEECC--------CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEE
Confidence 344555543322 4688887654 46799999999999999999875421 1111 1 236788999999
Q ss_pred CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHH
Q psy10619 75 GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKL 154 (246)
Q Consensus 75 g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~ 154 (246)
|++.+++..++||..++++|+++|||+|+++ .+.+.+++.++++.+|||+||||+.+.||+|+.+++|.+|+.++++.
T Consensus 117 g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~ 194 (1068)
T PRK12815 117 GTNIEAIQKGEDRERFRALMKELGEPVPESE--IVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQ 194 (1068)
T ss_pred CCCHHHHHHhcCHHHHHHHHHHcCcCCCCce--eeCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHH
Confidence 9999999999999999999999999999975 78999999999999999999999999999999999999999999977
Q ss_pred HHHHHHhhcCCCceEEEecccCcceEEEEeeeccee-ec---chhhhhhhhc-------CCCCCCCC--cccceeccccc
Q psy10619 155 SSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL-IQ---TEKEFEYAKL-------LPPKPKLD--ETKILHAPMPG 221 (246)
Q Consensus 155 ~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~-v~---~~~~~~~~~~-------~~~~~~~~--~~~~l~sp~pg 221 (246)
.... ....++|||+|++|.+|+++.+++|..+ +. .....+.... +.|....+ ....++..+..
T Consensus 195 ~~~~----s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~k 270 (1068)
T PRK12815 195 GLQA----SPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLK 270 (1068)
T ss_pred HHhc----CCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence 6542 1135799999999557999999988643 11 1000110000 11221111 12446666777
Q ss_pred eeeeeeecCC-Ce----ee-CCCeEEEEcc
Q psy10619 222 LVKSVNCKVG-DQ----IM-EGQELCVVGK 245 (246)
Q Consensus 222 ~i~~l~~~~G-~~----v~-~g~~~~v~e~ 245 (246)
++..+++ .| .. +. .|+.+.++|.
T Consensus 271 i~~~Lg~-~G~~~vef~l~~~~g~~~ViEI 299 (1068)
T PRK12815 271 IISALGV-VGGCNIQFALDPKSKQYYLIEV 299 (1068)
T ss_pred HHHHcCC-CCceEEEEEEECCCCcEEEEEE
Confidence 7778888 45 22 22 3567899985
No 46
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.89 E-value=1.8e-22 Score=170.73 Aligned_cols=134 Identities=27% Similarity=0.399 Sum_probs=118.2
Q ss_pred CCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH----HHHHH
Q psy10619 45 RADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH----CVEIA 119 (246)
Q Consensus 45 ~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~----~~~~~ 119 (246)
++|++++. +|..+|+..++..|+..|+|++|++..++.+++||..++++|+++|||+|++. .+.+.++ +....
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~~ 158 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEASLAEIE 158 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhhHHHHH
Confidence 69999988 57788999999999999999999999999999999999999999999999975 4444333 34456
Q ss_pred HHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 120 ~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d 187 (246)
+.++||+||||.++++|.|+.++++.+|+.++++.++. + ++.+|||+||+ |+|++|.++++
T Consensus 159 ~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 159 AKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFE-----Y-DRKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEcCcC-CEEEEEEEECC
Confidence 78899999999999999999999999999999988653 2 46899999999 89999999986
No 47
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.89 E-value=3.6e-22 Score=169.99 Aligned_cols=137 Identities=23% Similarity=0.291 Sum_probs=118.1
Q ss_pred hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC------CHHHHH
Q psy10619 44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR------DADHCV 116 (246)
Q Consensus 44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------~~~~~~ 116 (246)
.++|++++. +|..+|++.++.+|+.+|+|++|++..++.+++||..++++|+++|||+|+++ .+. +.+++.
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~--~~~~~~~~~~~~~~~ 163 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFI--GFRKYDYFLDKEGIK 163 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEE--EEeccccccchHHHH
Confidence 469999988 46778999999999999999999999999999999999999999999999964 222 344554
Q ss_pred HH-HHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 117 EI-ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 117 ~~-~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+. ...++||+||||.++++|.|+.++++.+|+..+++.++. + ++.+|||+||. |+|++|.+++++.
T Consensus 164 ~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~-----~-~~~vlVEefI~-GrEi~v~Vlg~~~ 230 (364)
T PRK14570 164 KDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFK-----Y-DLTVVIEKFIE-AREIECSVIGNEQ 230 (364)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHh-----C-CCCEEEECCcC-CEEEEEEEECCCC
Confidence 33 356899999999999999999999999999999988763 2 46799999999 9999999998753
No 48
>PRK07206 hypothetical protein; Provisional
Probab=99.89 E-value=2.4e-22 Score=175.17 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCHHHHH-HHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVS-RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~-~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
.+.+.++++++++++|+|+++.+. ...+++ +.+..|++ ++++++++..++||..|+++|+++|||+|+++ .+.
T Consensus 57 ~~~~~l~~~~~~~~~d~vi~~~e~---~~~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~--~~~ 130 (416)
T PRK07206 57 GDIDDLVEFLRKLGPEAIIAGAES---GVELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQI--NTA 130 (416)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCc---cHHHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEE--ecC
Confidence 567899999999999999998522 123333 34456665 36889999999999999999999999999965 688
Q ss_pred CHHHHHHHHHHhCC---cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh-hcCCCceEEEecccCcceEEEEeee
Q psy10619 111 DADHCVEIARDIGY---PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA-SFGDDRILVEKFIKNPRHIEIQGTT 186 (246)
Q Consensus 111 ~~~~~~~~~~~~~~---P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lve~~i~~g~e~~v~v~~ 186 (246)
+.+++.++++.++| |+||||..|+||+|+.+++|.+|++.+++++...... ......++||+||+ |.|++++++.
T Consensus 131 ~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~-G~E~sv~~~~ 209 (416)
T PRK07206 131 DWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI-GTEYVVNFVS 209 (416)
T ss_pred CHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc-cEEEEEEEEE
Confidence 99999999999888 9999999999999999999999999999887542110 01135799999999 8999999886
Q ss_pred cceeecchhhhhhh-hcCCC----------CC-CCCcccceeccccceeeeeeecCCC----eeeCCCeEEEEcc
Q psy10619 187 YKFLIQTEKEFEYA-KLLPP----------KP-KLDETKILHAPMPGLVKSVNCKVGD----QIMEGQELCVVGK 245 (246)
Q Consensus 187 d~~~v~~~~~~~~~-~~~~~----------~~-~~~~~~~l~sp~pg~i~~l~~~~G~----~v~~g~~~~v~e~ 245 (246)
.+..+.......+. ..... .+ ..+....+...+..++.+++++.|- ..-..+...+||.
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEi 284 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEI 284 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEE
Confidence 43332110000000 00000 00 0111234556666777788877662 2333344577886
No 49
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.88 E-value=3.9e-22 Score=166.93 Aligned_cols=145 Identities=22% Similarity=0.351 Sum_probs=125.6
Q ss_pred HHHHHHHHhCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH
Q psy10619 36 KIIDAIRQTRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH 114 (246)
Q Consensus 36 ~l~~~~~~~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~ 114 (246)
.+++.++.+++|+|++.+ |..+++..+...++..|++++|++..++.++.||..++++|+++|||+|+++ .+.+.++
T Consensus 47 ~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~ 124 (304)
T PRK01372 47 DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWI--VLTREED 124 (304)
T ss_pred chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcch
Confidence 355566677899998875 3456777788999999999999999999999999999999999999999976 6788888
Q ss_pred HHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 115 CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 115 ~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+..++..++||+|+||..+++|+|+.++++.+++.++++.... + ...+|||+||+ |+|+++.++++..
T Consensus 125 ~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~E~~v~vi~~~~ 192 (304)
T PRK01372 125 LLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIK-GRELTVAVLGGKA 192 (304)
T ss_pred HHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccC-CEEEEEEEECCCc
Confidence 8888889999999999999999999999999999988877642 2 46799999999 8999999987753
No 50
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.88 E-value=2.1e-21 Score=155.25 Aligned_cols=172 Identities=18% Similarity=0.314 Sum_probs=148.0
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
+|..|.=.++|+++.|+..+.+.+ +|.++|..+++++++|+|+|-.+... ......+++.|..++ |...+
T Consensus 38 ViAVDrY~~APAmqVAhrs~Vi~M-------lD~~al~avv~rekPd~IVpEiEAI~--td~L~elE~~G~~VV-P~ArA 107 (394)
T COG0027 38 VIAVDRYANAPAMQVAHRSYVIDM-------LDGDALRAVVEREKPDYIVPEIEAIA--TDALVELEEEGYTVV-PNARA 107 (394)
T ss_pred EEEecCcCCChhhhhhhheeeeec-------cCHHHHHHHHHhhCCCeeeehhhhhh--HHHHHHHHhCCceEc-cchHH
Confidence 367788899999999999998754 89999999999999999999875432 233456889999987 99999
Q ss_pred HHHhcCHHHHHHHHH-HhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAK-EAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~-~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
..+++|+...|++.. ++|+|+.++. ...+.+++.++++++||||++||..+++|+|-+++++.++++.+|+......
T Consensus 108 t~ltMnRegiRrlAAeeLglpTs~Y~--fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~ 185 (394)
T COG0027 108 TKLTMNREGIRRLAAEELGLPTSKYR--FADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGG 185 (394)
T ss_pred HHhhhcHHHHHHHHHHHhCCCCcccc--ccccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcC
Confidence 999999999999865 6999999965 6899999999999999999999999999999999999999999999987543
Q ss_pred HhhcCCCceEEEecccCcceEEEEeee
Q psy10619 160 AASFGDDRILVEKFIKNPRHIEIQGTT 186 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~e~~v~v~~ 186 (246)
+ .+...++||+|+++..|+++-.++
T Consensus 186 R--~~~~RVIVE~fv~fd~EiTlLtvr 210 (394)
T COG0027 186 R--GGSGRVIVEEFVKFDFEITLLTVR 210 (394)
T ss_pred C--CCCCcEEEEEEecceEEEEEEEEE
Confidence 2 335789999999977777766654
No 51
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.88 E-value=7.5e-22 Score=185.65 Aligned_cols=212 Identities=13% Similarity=0.196 Sum_probs=154.3
Q ss_pred ccceeEEcCCCCcCCCCCCHHHHHHHHHHh-CCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHH
Q psy10619 15 LADEAVCIGPPVAAQSYINVDKIIDAIRQT-RADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL 93 (246)
Q Consensus 15 ~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~ 93 (246)
.+|..+.. ++.|.+.+++.+++. .+++|+++.+.. ....+.+.+..|++ |++++++.+++||..++++
T Consensus 46 ~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~V~~~se~~--v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~ 114 (887)
T PRK02186 46 IRVVTISA-------DTSDPDRIHRFVSSLDGVAGIMSSSEYF--IEVASEVARRLGLP--AANTEAIRTCRDKKRLART 114 (887)
T ss_pred cceeEEEc-------CCCCHHHHHHHHHhcCCCCEEEeCchhh--HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHH
Confidence 35655544 346789999999986 678888775221 12345566778876 6899999999999999999
Q ss_pred HHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEec
Q psy10619 94 AKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKF 173 (246)
Q Consensus 94 l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~ 173 (246)
|+++|||+|+++ .+.+.+++.++.+.++||+||||.+++||+||++|+|.+|+.++++.+.. .....++||+|
T Consensus 115 L~~~GIp~P~~~--~v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~-----~~~~~~lvEEf 187 (887)
T PRK02186 115 LRDHGIDVPRTH--ALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR-----AGTRAALVQAY 187 (887)
T ss_pred HHHcCCCCCCEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh-----cCCCcEEEeec
Confidence 999999999965 68889999988899999999999999999999999999999999887653 12568999999
Q ss_pred ccCcceEEEEeeecceeecchhhhh-----------hhhcCCCCCCCCcccceeccccceeeeeeecCC----CeeeCCC
Q psy10619 174 IKNPRHIEIQGTTYKFLIQTEKEFE-----------YAKLLPPKPKLDETKILHAPMPGLVKSVNCKVG----DQIMEGQ 238 (246)
Q Consensus 174 i~~g~e~~v~v~~d~~~v~~~~~~~-----------~~~~~~~~~~~~~~~~l~sp~pg~i~~l~~~~G----~~v~~g~ 238 (246)
|+ |.||+|+++.++.++......+ ..+..|.....+....+...+...+..++++.| +..-.++
T Consensus 188 I~-G~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~ 266 (887)
T PRK02186 188 VE-GDEYSVETLTVARGHQVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGD 266 (887)
T ss_pred cc-CCcEEEEEEEECCcEEEEEEEeeecCCCCCeEEeccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECC
Confidence 99 8999999987654321110000 001112111112224466667777788888777 3333345
Q ss_pred eEEEEcc
Q psy10619 239 ELCVVGK 245 (246)
Q Consensus 239 ~~~v~e~ 245 (246)
.+.+||.
T Consensus 267 g~~liEI 273 (887)
T PRK02186 267 TVVIIEI 273 (887)
T ss_pred CEEEEEE
Confidence 6888886
No 52
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.87 E-value=9.1e-21 Score=163.82 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=118.8
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHH
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADH 114 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~ 114 (246)
..+++.+++++...-. -++++++.++.+|+..|+++++++..++.+|+||..++++++++|||+|+++.....+.++
T Consensus 94 ~~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 4455666666543222 1346899999999999999999999999999999999999999999999986322466777
Q ss_pred HHHHHHH--hCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 115 CVEIARD--IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 115 ~~~~~~~--~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
+.+.++. +|||+||||+.|++|+|++++++.+|++.++..+.. ...++||+||. |+|++|+++.+..+
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~-------~~~viVEe~I~-GrEitVev~vd~dG 240 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG-------QPEIKVMKRIR-NVEVCIEACVTRHG 240 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC-------CCCEEEEeccC-cEEEEEEEEEeCCC
Confidence 7666665 999999999999999999999999999998776532 36789999999 89999988876543
No 53
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.86 E-value=3.7e-21 Score=161.85 Aligned_cols=137 Identities=23% Similarity=0.360 Sum_probs=115.8
Q ss_pred hCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC-CHHH---H--H
Q psy10619 44 TRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR-DADH---C--V 116 (246)
Q Consensus 44 ~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~-~~~~---~--~ 116 (246)
.++|+|++.. |..+++..+...++..|+|++|+++.++.++.||..++++|+++|||+|++. .++ +.++ + .
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~ 139 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECE 139 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHH
Confidence 6799999875 3456777889999999999999999999999999999999999999999975 344 3332 2 2
Q ss_pred HHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 117 ~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.+...++||+|+||..+++|.|+.+++|.+++.++++.+.. + ...++||+||+ |+|+++.+++++.
T Consensus 140 ~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-----Y-DEEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred HHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEcCCC-CEEEEEEEECCCC
Confidence 33467899999999999999999999999999999887653 2 46799999999 9999999998654
No 54
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=1.1e-20 Score=157.73 Aligned_cols=132 Identities=21% Similarity=0.262 Sum_probs=111.8
Q ss_pred hCCCEEcccc-ccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 44 TRADAVHPGY-GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 44 ~~~d~v~~~~-~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
.++|++++.. |..+++..+...++..|+|++|+++.++.+++||..++++|+ +|||+|++. .+.+.. ....+
T Consensus 52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l 124 (299)
T PRK14571 52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPL 124 (299)
T ss_pred cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhc
Confidence 4689988774 455678889999999999999999999999999999999998 589999965 444322 23568
Q ss_pred CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 123 ~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+||+|+||.++++|.|+.+++|.+|+.++++..+.. ...+|||+||+ |+|+++.+++++.
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~-G~E~sv~vl~~~~ 184 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIP-GREMTVSILETEK 184 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEcccc-ceEEEEEEEcCCC
Confidence 999999999999999999999999999988765431 35799999999 8999999998764
No 55
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.85 E-value=1.4e-20 Score=175.89 Aligned_cols=139 Identities=21% Similarity=0.282 Sum_probs=120.5
Q ss_pred hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCC------HH-HH
Q psy10619 44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRD------AD-HC 115 (246)
Q Consensus 44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~------~~-~~ 115 (246)
.++|++++. +|..+|++.++.+|+..|+|++|++..++.+++||..+|++|+++|||+|++. .+.. .+ .+
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~~~ 602 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPELCL 602 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHHHH
Confidence 469999988 47788999999999999999999999999999999999999999999999975 3332 22 23
Q ss_pred HHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 116 VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 116 ~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.++.+.++||+||||.++++|.|+.++++.+|+..+++.++. + +..+|||+|+.+|+|++|.+++++.+
T Consensus 603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~-----~-~~~vlVEe~i~~grEi~v~vl~~~~~ 671 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL-----Y-DTDVFVEESRLGSREIEVSCLGDGSS 671 (809)
T ss_pred HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEeccCCCEEEEEEEEeCCCC
Confidence 455678999999999999999999999999999999988753 2 46799999998789999999998654
No 56
>PRK06849 hypothetical protein; Provisional
Probab=99.84 E-value=1.8e-20 Score=161.90 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=126.9
Q ss_pred CCCCCC--ChhhhccceeEEcCCCC-cCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 4 PDPCVF--QRHVKLADEAVCIGPPV-AAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 4 ~d~~~~--~~~~~~ad~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
.|.++. +...+.+|+++.+|.+. ++..| .+.|+++++++++|+|+|+.+.........+.++ .+..+++++.++
T Consensus 34 ~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~ 110 (389)
T PRK06849 34 ADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALLSIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCEVLHFDFEL 110 (389)
T ss_pred EeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHHHHHHHcCCCEEEECChHHHhHHhhhhhhc-CCcEEEcCCHHH
Confidence 344544 34567899999885322 22334 4899999999999999999743211111223333 357788899999
Q ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHH
Q psy10619 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEA 159 (246)
Q Consensus 81 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~ 159 (246)
+..++||..++++++++|||+|+++ .+++.+++.++..+. +||+|+||..+++|.|+.++.+.+.+....
T Consensus 111 ~~~~~DK~~~~~~~~~~GipvP~t~--~v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~------- 181 (389)
T PRK06849 111 LLLLHNKWEFAEQARSLGLSVPKTY--LITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELP------- 181 (389)
T ss_pred HHHhhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccc-------
Confidence 9999999999999999999999975 688999988877766 899999999999999999988854432211
Q ss_pred HhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 160 AASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 160 ~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.....++++||||+ |.|+++..+..++.
T Consensus 182 --~~~~~~~ivQe~I~-G~e~~~~~~~~~G~ 209 (389)
T PRK06849 182 --ISKDNPWVMQEFIQ-GKEYCSYSIVRSGE 209 (389)
T ss_pred --cCCCCCeEEEEEec-CCeEEEEEEEECCE
Confidence 01124699999999 78888776654443
No 57
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.82 E-value=3.6e-19 Score=163.70 Aligned_cols=159 Identities=26% Similarity=0.403 Sum_probs=133.6
Q ss_pred CCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCE--------EccccccCCCCHHHHHHHHHcCCeEeCC
Q psy10619 5 DPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADA--------VHPGYGFLSENASFVSRLKEEGVVFIGP 76 (246)
Q Consensus 5 d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~--------v~~~~~~~~e~~~~~~~~~~~g~~~~g~ 76 (246)
|.|....+++.+++.+.++| +...|++.|++.++++ +.+++|+.+ +.++..+.. ++
T Consensus 141 ~~~~~~~~~~~~~~~~~lgp--------st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~------~~i~~~~~~--~~ 204 (727)
T PRK14016 141 DLEAALARLRELDEDERLGP--------STAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQ------RRIQAAETD--QT 204 (727)
T ss_pred CHHHHHHHHHHHHHhcccCC--------CHHHHHHHHHHcCCCEEEeCCCCeEecCCcHHH------HHHHHhcCC--CC
Confidence 55677788888999988876 4579999999999998 556665533 334444443 58
Q ss_pred CHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE-eCCHHHHHHHHHHH
Q psy10619 77 TAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANNDQEAIEGFKLS 155 (246)
Q Consensus 77 ~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~-v~~~~el~~~~~~~ 155 (246)
+..++.++.||..++++|+++|||+|++. .+.+.+++.++++++|||+|+||..|++|+||.+ +++.+++.++++.+
T Consensus 205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~~--~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 205 SAIAVDIACDKELTKRLLAAAGVPVPEGR--VVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred cHHHHHHhCCHHHHHHHHHHCCcCCCCee--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 88999999999999999999999999975 6889999999999999999999999999999998 89999999999876
Q ss_pred HHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619 156 SQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 156 ~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
... ...++||+|++ |.|+++.+++++
T Consensus 283 ~~~------~~~viVEe~I~-G~d~Rv~Vvgg~ 308 (727)
T PRK14016 283 SKE------SSDVIVERYIP-GKDHRLLVVGGK 308 (727)
T ss_pred HHh------CCeEEEEEecC-CceEEEEEECCE
Confidence 542 36799999999 899999887654
No 58
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.81 E-value=3.4e-19 Score=140.37 Aligned_cols=105 Identities=47% Similarity=0.747 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD 165 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~ 165 (246)
||..++++++++|+|+|++....+.+.+++.++++++|||+++||..++||+|+.+++|.++|.++++.....+...|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999987434599999999999999999999999999999999999999999999999988888888
Q ss_pred CceEEEecccCcceEEEEeeeccee
Q psy10619 166 DRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 166 ~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
..+++|+|+.+.+|+.|++++|+.+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~g 105 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKG 105 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTS
T ss_pred ceEEEeeehhhhhhhhhhhhhcccc
Confidence 9999999999779999999999876
No 59
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.79 E-value=4.1e-18 Score=142.27 Aligned_cols=135 Identities=22% Similarity=0.274 Sum_probs=108.1
Q ss_pred CCCEEccccccC-CCC-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 45 RADAVHPGYGFL-SEN-ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 45 ~~d~v~~~~~~~-~e~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
++|++++..+.. ... ...+..++..|. ++++++.++.+++||..++++|+++|||+|++. .+.+.+++.+++..+
T Consensus 57 ~~d~v~~~~~~~~~~~~~~~~~~le~~g~-~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~ 133 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTAALRQFEMLGS-YPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDMV 133 (300)
T ss_pred CCCEEEEcCCCchhhHHHHHHHHHHHCCC-ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHHh
Confidence 688888754221 111 123567889995 456999999999999999999999999999975 567788888877777
Q ss_pred -CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc--CcceEEEEeeecc
Q psy10619 123 -GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK--NPRHIEIQGTTYK 188 (246)
Q Consensus 123 -~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~--~g~e~~v~v~~d~ 188 (246)
+||+|+||.+|++|+|++++++.+++..++..+.. . +..++||+||+ .|+|+++.+++++
T Consensus 134 ~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~-----~-~~~~lvQe~I~~~~g~d~rv~vig~~ 196 (300)
T PRK10446 134 GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRG-----L-NAHILVQEYIKEAQGCDIRCLVVGDE 196 (300)
T ss_pred CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHh-----c-CCCEEEEeeeccCCCceEEEEEECCE
Confidence 79999999999999999999999998887776432 2 36799999995 3899999998754
No 60
>KOG0237|consensus
Probab=99.78 E-value=8.1e-18 Score=144.45 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI 108 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 108 (246)
.|.+++.++|+++++.+|+++. |.+ .+...|.+.|+++|||+.+++.+..+|..+|++|.++|||+..+. .
T Consensus 55 ~d~~ala~f~~e~~I~lVvvGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~--~ 128 (788)
T KOG0237|consen 55 ADFEALASFCKEHNINLVVVGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYK--T 128 (788)
T ss_pred hhHHHHHHHHHHcceeEEEECC----chhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceee--e
Confidence 4788999999999999999997 444 567889999999999999999999999999999999999999964 7
Q ss_pred cCCHHHHHHHHHHhCC-cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeec
Q psy10619 109 IRDADHCVEIARDIGY-PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 109 ~~~~~~~~~~~~~~~~-P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d 187 (246)
+++.+++..+.++.+| ++|||...-..|+||.+..+.+|..++++.++.......-...++|||+++ |.|+++-.+.|
T Consensus 129 ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LE-GeEvS~laftD 207 (788)
T KOG0237|consen 129 FTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLE-GEEVSFLAFTD 207 (788)
T ss_pred eCCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcC-cceEEEEEEec
Confidence 8999999999999985 599999999999999999999999999999886533211136799999999 99999999999
Q ss_pred ceeec-chhhhhhhhcCCCCCCCCcc
Q psy10619 188 KFLIQ-TEKEFEYAKLLPPKPKLDET 212 (246)
Q Consensus 188 ~~~v~-~~~~~~~~~~~~~~~~~~~~ 212 (246)
++.+. ++..-++.++...+..+.+.
T Consensus 208 G~s~~~mp~aQDHKRl~dgD~GpNTG 233 (788)
T KOG0237|consen 208 GYSVRPLPPAQDHKRLGDGDTGPNTG 233 (788)
T ss_pred CcccccCCcccchhhhcCCCCCCCCC
Confidence 98864 44444444444444334333
No 61
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.78 E-value=1e-17 Score=138.24 Aligned_cols=166 Identities=20% Similarity=0.301 Sum_probs=135.6
Q ss_pred cCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619 3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR 82 (246)
Q Consensus 3 ~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~ 82 (246)
.-|.++++|+..+||..+.. .|.|.+++.+++.+ +|+|.--++. -.....+.+... .++. |+++++.
T Consensus 29 vLdp~~~~PA~~va~~~i~~-------~~dD~~al~ela~~--~DViT~EfE~--V~~~aL~~l~~~-~~v~-p~~~~l~ 95 (375)
T COG0026 29 VLDPDADAPAAQVADRVIVA-------AYDDPEALRELAAK--CDVITYEFEN--VPAEALEKLAAS-VKVF-PSPDALR 95 (375)
T ss_pred EecCCCCCchhhcccceeec-------CCCCHHHHHHHHhh--CCEEEEeecc--CCHHHHHHHHhh-cCcC-CCHHHHH
Confidence 45789999999999999874 46789999999998 7777644322 233445556555 5555 9999999
Q ss_pred HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-CCceeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~~~~~~~~ 161 (246)
+.+||...|++|+++|+|+|+|. .+.+.+++..+++++|+|+|+|.+.|+ .|+|.+++++.+++...+.....
T Consensus 96 ~~qdR~~eK~~l~~~Gi~va~~~--~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~---- 169 (375)
T COG0026 96 IAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE---- 169 (375)
T ss_pred HHhhHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc----
Confidence 99999999999999999999975 799999999999999999999999877 99999999999888775554321
Q ss_pred hcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 162 SFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 162 ~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
....++|+|++..+|+||-+.++..+
T Consensus 170 ---~~~~vlE~fV~F~~EiSvi~aR~~~G 195 (375)
T COG0026 170 ---GGVPVLEEFVPFEREISVIVARSNDG 195 (375)
T ss_pred ---cCceeEEeecccceEEEEEEEEcCCC
Confidence 23349999999999999999876544
No 62
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.78 E-value=1.7e-18 Score=154.57 Aligned_cols=166 Identities=19% Similarity=0.293 Sum_probs=127.8
Q ss_pred CcCCCCCCChhhhccceeEEcCCCCcCCCCCCH--HHHHHHHHHhCCCEEccccccCCCCHHH-------HHHHHHcCCe
Q psy10619 2 LFPDPCVFQRHVKLADEAVCIGPPVAAQSYINV--DKIIDAIRQTRADAVHPGYGFLSENASF-------VSRLKEEGVV 72 (246)
Q Consensus 2 v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~d~v~~~~~~~~e~~~~-------~~~~~~~g~~ 72 (246)
+|+..|.++. |+.+.++|.+... +++ +.|++.|++.++++++... ++..+ ...+++ .+.
T Consensus 217 ~y~~~d~~~~-----~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~s----e~~~~~L~~g~~~~~~~~-s~~ 284 (547)
T TIGR03103 217 VFALKRKNAI-----NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLDA----EGGLFRLSLGGRSIRCRE-SLS 284 (547)
T ss_pred EEEEeccCCc-----CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEECC----CCCEEEecCCceEEEEEe-ccC
Confidence 4566666666 8888887654432 555 8999999999999998653 11100 001111 111
Q ss_pred EeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE-eCCHHHHHHH
Q psy10619 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANNDQEAIEG 151 (246)
Q Consensus 73 ~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~-v~~~~el~~~ 151 (246)
..+++.++.+|.||..++++|+++|||+|++. .+.+.+++.++++++| |+||||..|++|+|+.+ +++.+++..+
T Consensus 285 -~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~--~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a 360 (547)
T TIGR03103 285 -ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQ--LAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAA 360 (547)
T ss_pred -CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHH
Confidence 12688999999999999999999999999976 5788888988888998 69999999999999997 8999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 152 FKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 152 ~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
+...... ...+|||+|++ |.|+++.|+++...
T Consensus 361 ~~~a~~~------~~~vlvEe~i~-G~d~Rv~Vigg~vv 392 (547)
T TIGR03103 361 IAKARQF------CDRVLLERYVP-GEDLRLVVIDFEVV 392 (547)
T ss_pred HHHHHhc------CCcEEEEEecc-CCeEEEEEECCEEE
Confidence 9886532 35799999999 89999987765443
No 63
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.78 E-value=7.5e-18 Score=139.45 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~ 140 (246)
.+...++..|++++ ++++++.++.||..++++|+++|||+|++. .+.+.+++..+...++||+|+||..|++|+|+.
T Consensus 63 ~~~~~le~~g~~~~-n~~~~~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~ 139 (280)
T TIGR02144 63 YSARLLEALGVPVI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTY--LAFDREAALKLAEALGYPVVLKPVIGSWGRLVA 139 (280)
T ss_pred HHHHHHHHCCCcEE-CcHHHHHHHhhHHHHHHHHHHCCcCCCCeE--eeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEE
Confidence 45667888999998 567999999999999999999999999975 567888888888889999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeecce
Q psy10619 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYKF 189 (246)
Q Consensus 141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~ 189 (246)
++++.+++.++++..... .......+++|+||++ ++++++.++++..
T Consensus 140 ~v~~~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig~~~ 187 (280)
T TIGR02144 140 LIRDKDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIGDEA 187 (280)
T ss_pred EECCHHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEECCEE
Confidence 999999998876542211 0111356999999985 7889998886653
No 64
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.76 E-value=2.7e-17 Score=135.75 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=100.4
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~ 140 (246)
.+.+.++..|++++ ++++++..+.||..++++|+++|+|+|++. .+.+.+++.++..+++||+|+||..|++|+|+.
T Consensus 64 ~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~--~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~ 140 (277)
T TIGR00768 64 AVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTG--LAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVS 140 (277)
T ss_pred HHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHhcCCCEEEEECcCCCCCceE
Confidence 56778888999998 568999999999999999999999999975 678899998889999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc--ceEEEEeeec
Q psy10619 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP--RHIEIQGTTY 187 (246)
Q Consensus 141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g--~e~~v~v~~d 187 (246)
++++.+++..++....... .....+++|+||++. .++++.++++
T Consensus 141 ~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~~~ 186 (277)
T TIGR00768 141 LARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVVGD 186 (277)
T ss_pred EEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEECC
Confidence 9999999988776543210 012479999999952 4666666544
No 65
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.73 E-value=1.4e-16 Score=134.39 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=111.4
Q ss_pred ChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHH
Q psy10619 10 QRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLE 89 (246)
Q Consensus 10 ~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~ 89 (246)
.+..+++|+++.+... .+..+.+...++++. +.++..+|.+..... .+.+...+++++| +.+++++.+||..
T Consensus 55 y~~~~~~De~i~v~~~---~di~~~~~~~~l~~~---~~iiIp~gs~v~y~~-~d~l~~~~~p~~g-n~~~l~~e~dK~~ 126 (358)
T PRK13278 55 YKRFPVADEFIIVDDF---SDILNEAVQEKLREM---NAILIPHGSFVAYLG-LENVEKFKVPMFG-NREILRWEADRDK 126 (358)
T ss_pred cccccccceEEEEcch---hhhcCHHHHHHHhhc---CcEEEeCCCcceeec-HHHHHHCCCCcCC-CHHHHHHhcCHHH
Confidence 4566778998887411 011222333333333 443333344332223 3344478899885 7789999999999
Q ss_pred HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceE
Q psy10619 90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRIL 169 (246)
Q Consensus 90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~l 169 (246)
++++|+++|||+|++ +.+.++ ++||+||||..+.||+|+++++|.+|+.++++.+........ ...++
T Consensus 127 ~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~i 194 (358)
T PRK13278 127 ERKLLEEAGIRIPRK----YESPED-------IDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAI 194 (358)
T ss_pred HHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEE
Confidence 999999999999994 344443 579999999999999999999999999999988754211111 46799
Q ss_pred EEecccCcceEEEEeeec
Q psy10619 170 VEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 170 ve~~i~~g~e~~v~v~~d 187 (246)
|||||. |.||+++.+..
T Consensus 195 IEEfI~-G~e~sv~~f~s 211 (358)
T PRK13278 195 IQEYVV-GVPYYFHYFYS 211 (358)
T ss_pred EEecCC-CcEEEEEEEEe
Confidence 999999 89999998864
No 66
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.72 E-value=3.9e-17 Score=126.60 Aligned_cols=103 Identities=21% Similarity=0.418 Sum_probs=80.6
Q ss_pred HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAAS 162 (246)
Q Consensus 83 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~ 162 (246)
+++||..++++++++|+|+|++. .+.+.+++..+...++||+|+||..++||.|++++++.+++.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~--~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTR--IVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EE--EECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 47899999999999999999965 78999999999999999999999999999999999999999999988865321
Q ss_pred cCCCceEEEecccCcceEEEEeeeccee
Q psy10619 163 FGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 163 ~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.....+++|+||+ |.|+++.++.....
T Consensus 77 ~~~~~~ivqe~i~-g~e~~~~~~~~~G~ 103 (184)
T PF13535_consen 77 LGNGPVIVQEYIP-GDEYSVDGVVDDGE 103 (184)
T ss_dssp -HSSSEEEEE----SEEEEEEEEEETTE
T ss_pred cCCccEEEEEeee-eeeEEEEEEEEcce
Confidence 1136799999999 89999998765433
No 67
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.69 E-value=5.9e-17 Score=124.57 Aligned_cols=130 Identities=22% Similarity=0.340 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcE-EEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcC
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPV-MIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFG 164 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~-vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~ 164 (246)
+|..+|++|+++|||++++. .+++.+++.+++++.++|+ |||+....+|+||.++++.+|..+++++++.. ..++
T Consensus 2 SK~faK~fm~~~~IPTa~~~--~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~fg 77 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYK--VFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKFG 77 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EE--EESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STTC
T ss_pred CHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--cccC
Confidence 79999999999999999864 7999999999999999999 99999999999999999999999999998753 2233
Q ss_pred --CCceEEEecccCcceEEEEeeecceeec-chhhhhhhhcCCCCCCCCccc-ceecccc
Q psy10619 165 --DDRILVEKFIKNPRHIEIQGTTYKFLIQ-TEKEFEYAKLLPPKPKLDETK-ILHAPMP 220 (246)
Q Consensus 165 --~~~~lve~~i~~g~e~~v~v~~d~~~v~-~~~~~~~~~~~~~~~~~~~~~-~l~sp~p 220 (246)
...++||||+. |.|+|+.++.|+..+. ++...++.+.......+.+.+ .-.+|.|
T Consensus 78 ~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p 136 (194)
T PF01071_consen 78 DAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVP 136 (194)
T ss_dssp CCGSSEEEEE----SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTT
T ss_pred CCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCccceeecc
Confidence 36799999999 9999999999998754 455556655555444444442 2444444
No 68
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.69 E-value=1.8e-16 Score=148.64 Aligned_cols=202 Identities=20% Similarity=0.261 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
+...|++.|.+++|++.....+.+-.. +...+..+. -..-..+..++.++.||..++++|+++|||+|++. .+.
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~--~~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~--~~~ 235 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQA--TETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGT--VVQ 235 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEe--ecCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEC
Confidence 457788888888888766442211000 000010100 01112567889999999999999999999999975 688
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCCCCceeEE-eCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 111 DADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 111 ~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~-v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
+.+++.++++++|||+|+||.++++|+||.+ +++.+++.++++.+... ...+|||+|++ |+||++.+++++-
T Consensus 236 s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~-G~e~rvlVv~~~v 308 (864)
T TIGR02068 236 SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFIT-GRDHRLLVVGGKV 308 (864)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEecc-CCEEEEEEECCEE
Confidence 9999999999999999999999999999998 99999999999887542 36799999999 8999998876543
Q ss_pred eecc---------hhhhhhhhcCC-----CCCCCCcc-----cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 190 LIQT---------EKEFEYAKLLP-----PKPKLDET-----KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 190 ~v~~---------~~~~~~~~~~~-----~~~~~~~~-----~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.... ........++. |....... -.+-..+...+.+-++..-+-..+|+.|..-++
T Consensus 309 vaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~ 383 (864)
T TIGR02068 309 VAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRAT 383 (864)
T ss_pred EEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecc
Confidence 3221 11111111111 11110000 112222334556667777777888888876654
No 69
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.67 E-value=7.9e-16 Score=139.69 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCC---HHHHHHH
Q psy10619 76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANN---DQEAIEG 151 (246)
Q Consensus 76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~---~~el~~~ 151 (246)
.+..+..+|.||..++++|+++|||+|++. .+.+.+++.+....+ +||+||||.++++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~--~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGD--EFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 466778999999999999999999999975 677877777766666 6999999999999999999765 7888888
Q ss_pred HHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee---------ecchhhhhhhhcCC-----CCCCCC----ccc
Q psy10619 152 FKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL---------IQTEKEFEYAKLLP-----PKPKLD----ETK 213 (246)
Q Consensus 152 ~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~---------v~~~~~~~~~~~~~-----~~~~~~----~~~ 213 (246)
+..++. + +..+|||+||+ |+||++.|++++.. |...+......++. |.-... ...
T Consensus 543 l~~A~~-----~-~~~VLVEefI~-G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~ 615 (737)
T TIGR01435 543 LNIAFS-----E-DSSVIIEEFLP-GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEK 615 (737)
T ss_pred HHHHHh-----c-CCeEEEEeccc-CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCccc
Confidence 876543 2 46799999999 99999999977644 22222223322221 100000 001
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.........+.+-++..-+-..+|+.|...++
T Consensus 616 I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~ 647 (737)
T TIGR01435 616 ITGPEETLMLKEQGLTIDSIPKKEQIVYLREN 647 (737)
T ss_pred ccchHHHHHHHHcCCCccccCCCCCEEEEcCC
Confidence 11111223455677777888999999987765
No 70
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.67 E-value=9.2e-16 Score=141.01 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHhCCCEEccccc-cCCCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYG-FLSEN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI 108 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~-~~~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 108 (246)
.+...+++.|.+.++++.+.... .+... ..-...+...+. ...++..+..+|.||..++++|+++|||+|++. .
T Consensus 432 ~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~~~-t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~--~ 508 (752)
T PRK02471 432 LSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNM-TSKDNYISPLIMENKVVTKKILAEAGFPVPAGD--E 508 (752)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEeccc-cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEE--E
Confidence 56689999999999998875531 10000 000000011111 112445567888999999999999999999975 6
Q ss_pred cCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEe---CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEe
Q psy10619 109 IRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIA---NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG 184 (246)
Q Consensus 109 ~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v---~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v 184 (246)
+.+.+++..++..+ |||+||||.+|++|+||.++ ++.+++.+++..++. + +..+|||+||+ |+||+|.+
T Consensus 509 ~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~-----~-~~~vlVEEfI~-G~E~Rv~V 581 (752)
T PRK02471 509 FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFR-----E-DSSVLVEEFIV-GTEYRFFV 581 (752)
T ss_pred EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHh-----c-CCcEEEEeccc-CCEEEEEE
Confidence 78888887777664 89999999999999999985 568888888877543 2 46799999999 99999998
Q ss_pred eeccee---------ecchhhhhhhhcCC---CCC--CCCccc-----ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 185 TTYKFL---------IQTEKEFEYAKLLP---PKP--KLDETK-----ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 185 ~~d~~~---------v~~~~~~~~~~~~~---~~~--~~~~~~-----~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
++++.. |...+......++. ..+ ...... .+-......+.+-++..-+-..+||.|...++
T Consensus 582 iggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~ 661 (752)
T PRK02471 582 LDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLREN 661 (752)
T ss_pred ECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCC
Confidence 865432 11222222222221 100 000000 01112223455677788888899999887665
No 71
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.2e-15 Score=125.67 Aligned_cols=139 Identities=23% Similarity=0.373 Sum_probs=107.7
Q ss_pred CCCEEccccccCCCC-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHH-Hh
Q psy10619 45 RADAVHPGYGFLSEN-ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIAR-DI 122 (246)
Q Consensus 45 ~~d~v~~~~~~~~e~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~ 122 (246)
..|++++..+..... ..+.+.++..|++++ +++.++..|+||..+.++|..+|+|+|++. ...+.+++..+.+ .+
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~--i~~~~~~~~~~~~~~~ 154 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTL--ITRDPDEAAEFVAEHL 154 (318)
T ss_pred cCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEE--EEcCHHHHHHHHHHhc
Confidence 567777664322222 356778999999999 999999999999999999999999999975 6777666665554 56
Q ss_pred CCcEEEEeccCCCCceeEEeCCHH-HHHHHHHHHHHHHHhhcCCCceEEEecccCcc-eEEEEeeecceee
Q psy10619 123 GYPVMIKASAGGGGKGMRIANNDQ-EAIEGFKLSSQEAAASFGDDRILVEKFIKNPR-HIEIQGTTYKFLI 191 (246)
Q Consensus 123 ~~P~vvKp~~g~g~~gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~-e~~v~v~~d~~~v 191 (246)
|||+|+||.+|++|+||++++|.+ ++.+.+..+.. .+...+|+|+||+... +...-+++++..+
T Consensus 155 g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~-----~~~~~~ivQeyi~~~~~~~rrivv~~~~~~ 220 (318)
T COG0189 155 GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQ-----EGRKLIIVQEYIPKAKRDDRRVLVGGGEVV 220 (318)
T ss_pred CCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhc-----cccceEehhhhcCcccCCcEEEEEeCCEEe
Confidence 899999999999999999999999 88877776543 1123599999998743 5555566665543
No 72
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=4.3e-15 Score=123.67 Aligned_cols=137 Identities=23% Similarity=0.372 Sum_probs=117.7
Q ss_pred hCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCC----HHHHHHH
Q psy10619 44 TRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRD----ADHCVEI 118 (246)
Q Consensus 44 ~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~----~~~~~~~ 118 (246)
.++|+++|. +|+..|+..++.+++..|+|++|++..+...++||..+|.+++..|+|++++. .++. .....+.
T Consensus 60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~--~~~~~~~~~~~~e~~ 137 (317)
T COG1181 60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYV--ALTRDEYSSVIVEEV 137 (317)
T ss_pred ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCcccee--eeecccchhHHHHHh
Confidence 457777776 57788999999999999999999999999999999999999999999999975 3332 2223455
Q ss_pred HHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecce
Q psy10619 119 ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 119 ~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
...++||++|||...++|.|+..+++.+|+..+++.++.. +.++++|+++. ++|++|.++++..
T Consensus 138 ~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 138 EEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred hcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc
Confidence 6678999999999999999999999999999977776652 68899999999 9999999998854
No 73
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.62 E-value=8.2e-16 Score=120.80 Aligned_cols=89 Identities=26% Similarity=0.479 Sum_probs=70.1
Q ss_pred HHHHhCCCCCCCCccccCCHHH----HHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCce
Q psy10619 93 LAKEAGVNIIPGFNGIIRDADH----CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRI 168 (246)
Q Consensus 93 ~l~~~gip~p~~~~~~~~~~~~----~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 168 (246)
+|+.+|||+|+++ .+...+. .......++||++|||.++++|.|+.+++|.+++..++..++. + ++.+
T Consensus 1 l~~~~gI~tp~~~--~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~-----~-~~~v 72 (203)
T PF07478_consen 1 LLKSAGIPTPPYV--VVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK-----Y-DDDV 72 (203)
T ss_dssp HHHHTT-BB-SEE--EEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT-----T-HSEE
T ss_pred ChhhcCCCCCCEE--EEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh-----h-cceE
Confidence 5889999999986 3443322 2345678999999999999999999999999999999988653 3 4789
Q ss_pred EEEecccCcceEEEEeeeccee
Q psy10619 169 LVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 169 lve~~i~~g~e~~v~v~~d~~~ 190 (246)
|||+||+ |+|++|.+++++..
T Consensus 73 lVEefI~-G~E~tv~vl~~~~~ 93 (203)
T PF07478_consen 73 LVEEFIS-GREFTVGVLGNGEP 93 (203)
T ss_dssp EEEE--S-SEEEEEEEEESSST
T ss_pred EEEeeec-ccceEEEEEecCCc
Confidence 9999998 99999999997653
No 74
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.56 E-value=6.7e-14 Score=116.77 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=108.9
Q ss_pred hccceeEEcCCCCcCCCCCC--HHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHh--cCHHH
Q psy10619 14 KLADEAVCIGPPVAAQSYIN--VDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGM--GDKLE 89 (246)
Q Consensus 14 ~~ad~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~--~dK~~ 89 (246)
.++|+++.++ +|.+ .+.+.+.+++. ++|+.-++.+.+.........+..+|++|+. ..+++- +||..
T Consensus 59 ~~~d~~i~~~------~f~~~~~~~~~~~l~~~--n~i~iPh~sf~~y~g~~~ie~~~~vp~fGnr-~~lrwE~~~dKk~ 129 (366)
T PRK13277 59 GIVDEVIVLD------KFKDILSEKVQDELREE--NAIFVPNRSFAVYVGYDAIENEFKVPIFGNR-YLLRWEERTGEKN 129 (366)
T ss_pred cccceEEEec------chhhhhhHHHHHHHHHC--CeEEecCCCeEEEecHHHHhhcCCCCcccCH-HHhhhhhccCHHH
Confidence 3689999875 2332 23555555553 4666666665554444444446899999776 455444 78888
Q ss_pred HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCC--CceeEEeCCHHHHHHHHHHHHHHHHh-hcCCC
Q psy10619 90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGG--GKGMRIANNDQEAIEGFKLSSQEAAA-SFGDD 166 (246)
Q Consensus 90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g--~~gv~~v~~~~el~~~~~~~~~~~~~-~~~~~ 166 (246)
+.++|+++||++|+.+ .++ .++.+|++|||..++| |+|+++++|.+|+......+.....- .....
T Consensus 130 ~yk~L~~aGI~~Pk~~----~~p-------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~ 198 (366)
T PRK13277 130 YYWLLEKAGIPYPKLF----KDP-------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLK 198 (366)
T ss_pred HHHHHHHcCCCCceee----cCc-------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccc
Confidence 8889999999999964 333 3568999999999999 99999999999998887665421000 00114
Q ss_pred ceEEEecccCcceEEEEeeec
Q psy10619 167 RILVEKFIKNPRHIEIQGTTY 187 (246)
Q Consensus 167 ~~lve~~i~~g~e~~v~v~~d 187 (246)
+++|||||. |.||+++++.+
T Consensus 199 ~~iIQEyI~-G~ey~~d~F~s 218 (366)
T PRK13277 199 NARIEEYVI-GAHFNFNYFYS 218 (366)
T ss_pred cceeEeccC-CCEEEEEEEEe
Confidence 567999999 89999999987
No 75
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.55 E-value=1.7e-14 Score=112.56 Aligned_cols=99 Identities=24% Similarity=0.397 Sum_probs=64.3
Q ss_pred hcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619 84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAAS 162 (246)
Q Consensus 84 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~ 162 (246)
+.||..+.++|+++|||+|++. .+.+.+++.++.+.+ ++|+|+||..|+.|.||.++++.+++...+.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~--~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~----- 73 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETR--VTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKR----- 73 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EE--EESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHh-----
Confidence 3699999999999999999965 788999999999999 89999999999999999999999999888776432
Q ss_pred cCCCceEEEecccCc--ceEEEEeeeccee
Q psy10619 163 FGDDRILVEKFIKNP--RHIEIQGTTYKFL 190 (246)
Q Consensus 163 ~~~~~~lve~~i~~g--~e~~v~v~~d~~~ 190 (246)
.+..+++|+||+.. ++++|.++++...
T Consensus 74 -~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv 102 (190)
T PF08443_consen 74 -LENPILVQEFIPKDGGRDLRVYVIGGKVV 102 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEETTEEE
T ss_pred -ccCcceEeccccCCCCcEEEEEEECCEEE
Confidence 14678999999863 5999999987654
No 76
>KOG0370|consensus
Probab=99.49 E-value=5.5e-14 Score=126.58 Aligned_cols=162 Identities=17% Similarity=0.309 Sum_probs=138.5
Q ss_pred hhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHH
Q psy10619 13 VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENASFVSRLKEEGVVFIGPTAECIRGMGDKLESK 91 (246)
Q Consensus 13 ~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~ 91 (246)
...||..|+.. ++.+.++++-..++...++...|+. ..| ++-.|.+.|++++|.+++.+..+.|+..+-
T Consensus 969 yDecdrLYFee--------is~E~vmDiYe~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS 1038 (1435)
T KOG0370|consen 969 YDECDRLYFEE--------ISYERVMDIYELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFS 1038 (1435)
T ss_pred hHHHhhHhHhh--------hhhhhhhhhhhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHH
Confidence 34577666542 5678899999999999998887653 333 455688999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEE
Q psy10619 92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVE 171 (246)
Q Consensus 92 ~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve 171 (246)
+.|.+.|+..|+|. .+++.+++.++++..||||++.|.+--+|..+.++++.++|+..++++...+ .++++++.
T Consensus 1039 ~~Ld~i~v~Qp~Wk--elt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVis 1112 (1435)
T KOG0370|consen 1039 RMLDSIGVDQPAWK--ELTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVIS 1112 (1435)
T ss_pred HHHHHcCCCchhhh--hhccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhH
Confidence 99999999999986 6899999999999999999999999999999999999999999998876542 36889999
Q ss_pred ecccCcceEEEEeeeccee
Q psy10619 172 KFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 172 ~~i~~g~e~~v~v~~d~~~ 190 (246)
+||++.+|+.++.+.....
T Consensus 1113 Kfie~AkEidvDAVa~~G~ 1131 (1435)
T KOG0370|consen 1113 KFIEGAKEIDVDAVASDGK 1131 (1435)
T ss_pred HhhcccceechhhhccCCe
Confidence 9999999999997765444
No 77
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.47 E-value=2e-13 Score=104.04 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=72.0
Q ss_pred HHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEecc-CCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEe
Q psy10619 94 AKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA-GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEK 172 (246)
Q Consensus 94 l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~-g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~ 172 (246)
|+++|||+|++. .+.+.+++.++++++|||+|+|+.. |..|+|..++++.+|+..+++.+ +...+++|+
T Consensus 1 l~~~gip~~~~~--~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPYA--TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EEE--EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 688999999975 7999999999999999999999655 55999999999999999999875 257899999
Q ss_pred cccCcceEEEEeeeccee
Q psy10619 173 FIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 173 ~i~~g~e~~v~v~~d~~~ 190 (246)
|++..+|+++.+.++..+
T Consensus 71 ~v~f~~EiSvivaR~~~G 88 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDG 88 (172)
T ss_dssp ---ESEEEEEEEEEETTS
T ss_pred ccCCcEEEEEEEEEcCCC
Confidence 999999999999997765
No 78
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.46 E-value=8.4e-13 Score=110.12 Aligned_cols=141 Identities=11% Similarity=0.172 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhCCCEEccccc-cC--------------CCC-H-HH-HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHH
Q psy10619 34 VDKIIDAIRQTRADAVHPGYG-FL--------------SEN-A-SF-VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAK 95 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~~-~~--------------~e~-~-~~-~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~ 95 (246)
...+++.+++++++++..... .+ +.. . .+ ....+..|++++ ++++++..|.||..+..+|.
T Consensus 38 ~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~ 116 (328)
T PLN02941 38 QPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVA 116 (328)
T ss_pred hHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHH
Confidence 355788999999888765432 11 100 0 11 223456789988 99999999999999999999
Q ss_pred HhC-------CCCCCCCccccCCHHHHH---HHHHHhCCcEEEEeccC---CCCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619 96 EAG-------VNIIPGFNGIIRDADHCV---EIARDIGYPVMIKASAG---GGGKGMRIANNDQEAIEGFKLSSQEAAAS 162 (246)
Q Consensus 96 ~~g-------ip~p~~~~~~~~~~~~~~---~~~~~~~~P~vvKp~~g---~g~~gv~~v~~~~el~~~~~~~~~~~~~~ 162 (246)
++| ||+|+++ ++.+.+.+. ....+++||+|+||..| +.|+++.++.+++.+...
T Consensus 117 ~~~~~~~~~~i~~P~t~--v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l----------- 183 (328)
T PLN02941 117 DLKLSDGYGSVGVPKQL--VVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL----------- 183 (328)
T ss_pred HcCCcccCCCCCCCCEE--EEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc-----------
Confidence 999 9999975 677766533 33467899999999999 788899999999887651
Q ss_pred cCCCceEEEecccC-cceEEEEeeeccee
Q psy10619 163 FGDDRILVEKFIKN-PRHIEIQGTTYKFL 190 (246)
Q Consensus 163 ~~~~~~lve~~i~~-g~e~~v~v~~d~~~ 190 (246)
...+++||||+. |+.|.|-|+++...
T Consensus 184 --~~p~~lQEfVnh~g~d~RVfVvGd~v~ 210 (328)
T PLN02941 184 --EPPLVLQEFVNHGGVLFKVYVVGDYVK 210 (328)
T ss_pred --CCcEEEEEecCCCCEEEEEEEECCEEE
Confidence 246999999955 88999999998864
No 79
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.43 E-value=1.9e-13 Score=96.40 Aligned_cols=81 Identities=46% Similarity=0.813 Sum_probs=74.8
Q ss_pred CCcCCCCCCChhhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH
Q psy10619 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC 80 (246)
Q Consensus 1 ~v~~d~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~ 80 (246)
+|+++.|..+.+..+||+.|.+|+.+...+|++.+.++++++++++|+++|++++++|+..+++.+++.|+.++||++++
T Consensus 30 ~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~ 109 (110)
T PF00289_consen 30 AVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEA 109 (110)
T ss_dssp EEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHH
T ss_pred eccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHh
Confidence 47889999999999999999999888889999999999999999999999999999999999999999999999999987
Q ss_pred H
Q psy10619 81 I 81 (246)
Q Consensus 81 ~ 81 (246)
+
T Consensus 110 i 110 (110)
T PF00289_consen 110 I 110 (110)
T ss_dssp H
T ss_pred C
Confidence 5
No 80
>PRK12458 glutathione synthetase; Provisional
Probab=99.36 E-value=9.7e-12 Score=105.23 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=85.0
Q ss_pred HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCceeEEeCC
Q psy10619 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGKGMRIANN 144 (246)
Q Consensus 66 ~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~gv~~v~~ 144 (246)
++..|++++ ++++++..+.||..+..+++ +++|++. ...+.+++.++++..++| +|+||..|++|+|++++++
T Consensus 110 ~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~--v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~ 183 (338)
T PRK12458 110 AARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTH--ISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEK 183 (338)
T ss_pred HHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEE--EeCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEec
Confidence 356788877 99999999999999977665 6788864 567888888888888765 9999999999999999976
Q ss_pred HHH--HHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeecc
Q psy10619 145 DQE--AIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTYK 188 (246)
Q Consensus 145 ~~e--l~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d~ 188 (246)
.++ +...++.+.. ...+|+|+||++ +.++++-++++.
T Consensus 184 ~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv~g~ 224 (338)
T PRK12458 184 SAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLLNGE 224 (338)
T ss_pred CChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEECCE
Confidence 653 4444443321 357999999984 357777766554
No 81
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.34 E-value=7e-12 Score=108.31 Aligned_cols=102 Identities=23% Similarity=0.298 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+++.+|++|+++|||+|++. .+++.+++.+++.++ +||+|+||....+++ ||.+.+|.+++.++++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~--~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGI--VATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCe--eeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 67889999999999999975 789999999999999 999999998654444 89999999999999988875311
Q ss_pred ---hh--cC--CCceEEEecccCcceEEEEeeecce
Q psy10619 161 ---AS--FG--DDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 ---~~--~~--~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
.. .+ -..++||+|++++.|+.+.+..|..
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~ 117 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRA 117 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCC
Confidence 00 01 1359999999989999999999864
No 82
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.33 E-value=1.4e-11 Score=106.42 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC-CcEEEEeccC--C--CCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAG--G--GGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~g--~--g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+.+..|++|+++|||+|++. .+++.+++.++++++| ||+|+||... + ++.||.+++|.+++.+++++++....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~--~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGY--VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 56788999999999999976 6789999999999999 9999999822 2 23389999999999999988764211
Q ss_pred hhc-----C--CCceEEEecccCcceEEEEeeecce
Q psy10619 161 ASF-----G--DDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 ~~~-----~--~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
... + -..++||+|+++|+|+.+.++.|+.
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS 117 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence 100 0 1369999999989999999999864
No 83
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.32 E-value=3.1e-11 Score=101.29 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=97.3
Q ss_pred CCCEEccccccC-CC-C---HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH
Q psy10619 45 RADAVHPGYGFL-SE-N---ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119 (246)
Q Consensus 45 ~~d~v~~~~~~~-~e-~---~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 119 (246)
++|++++..... .. . ..+.+.++..|++++ +++.+++.+.||..+.+++. ++|++. ...+.+++.+++
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~--v~~~~~~~~~~~ 150 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTL--VTRDKAEIRAFL 150 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEE--EeCCHHHHHHHH
Confidence 588888664211 11 1 256788888999988 99999999999999887753 789965 567888999998
Q ss_pred HHhCCcEEEEeccCCCCceeEEeCCH-HHHHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeecc
Q psy10619 120 RDIGYPVMIKASAGGGGKGMRIANND-QEAIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTYK 188 (246)
Q Consensus 120 ~~~~~P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d~ 188 (246)
+..+ |+|+||..|++|+|++++++. .++...++.+. ..+...+++|+||+. +.++++-++++.
T Consensus 151 ~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~ 216 (312)
T TIGR01380 151 AEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLIDGE 216 (312)
T ss_pred HHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEECCe
Confidence 8887 999999999999999998653 33333332221 112357999999974 569999888764
No 84
>PRK05246 glutathione synthetase; Provisional
Probab=99.30 E-value=7.2e-11 Score=99.35 Aligned_cols=130 Identities=14% Similarity=0.229 Sum_probs=95.5
Q ss_pred CCCEEccccccC-CC----CHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH
Q psy10619 45 RADAVHPGYGFL-SE----NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119 (246)
Q Consensus 45 ~~d~v~~~~~~~-~e----~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 119 (246)
.+|+|++..... .. ...+.+.++..|++++ +++.++..+.||..+.+++. ++|++. ...+.+++.+++
T Consensus 79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~--~~~~~~~~~~~~ 151 (316)
T PRK05246 79 DFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTL--VTRDKAEIRAFR 151 (316)
T ss_pred cCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEE--EeCCHHHHHHHH
Confidence 378888653211 11 1245677777899988 88999999999999888765 788864 677888888888
Q ss_pred HHhCCcEEEEeccCCCCceeEEeCC-HHHHHHHHHHHHHHHHhhcCCCceEEEecccC--cceEEEEeeec
Q psy10619 120 RDIGYPVMIKASAGGGGKGMRIANN-DQEAIEGFKLSSQEAAASFGDDRILVEKFIKN--PRHIEIQGTTY 187 (246)
Q Consensus 120 ~~~~~P~vvKp~~g~g~~gv~~v~~-~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g~e~~v~v~~d 187 (246)
++.+ |+|+||..|++|+|+.++.. ..++...++.+.. .+...+++|+||+. +.++++-++++
T Consensus 152 ~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv~g 216 (316)
T PRK05246 152 AEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLVDG 216 (316)
T ss_pred HHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEECC
Confidence 8887 99999999999999999943 3444433333221 22467999999975 46899888854
No 85
>KOG0370|consensus
Probab=99.28 E-value=2.6e-12 Score=116.08 Aligned_cols=204 Identities=20% Similarity=0.293 Sum_probs=163.7
Q ss_pred ccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCC-H--HH--HHHHHHcCCeEeCCCHHHHHHhcCHHH
Q psy10619 15 LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSEN-A--SF--VSRLKEEGVVFIGPTAECIRGMGDKLE 89 (246)
Q Consensus 15 ~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~-~--~~--~~~~~~~g~~~~g~~~~~~~~~~dK~~ 89 (246)
+||+.|.+| .+.+.+-..++.+++|++..++|+.... . .+ .-.+++.|++++|.+.+++....|+..
T Consensus 430 lAD~vyflp--------vT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~l 501 (1435)
T KOG0370|consen 430 LADKVYFLP--------VTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDL 501 (1435)
T ss_pred cceEEEEee--------cCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHH
Confidence 799999997 6789999999999999999998742111 1 12 347788999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceE
Q psy10619 90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRIL 169 (246)
Q Consensus 90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~l 169 (246)
+.+.|.+.+.+..++. .+.+.+++.++++++|||+++..++.-||-|--.++|++||.+.....++ ....+|
T Consensus 502 fa~am~ei~e~ia~s~--a~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a------~s~Qil 573 (1435)
T KOG0370|consen 502 FARALNEINEKIAPSE--AVSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALA------LSPQIL 573 (1435)
T ss_pred HHHHHHhhcccccchh--hHhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccc------cCceee
Confidence 9999999999999965 78999999999999999999999998899998899999999888777654 147899
Q ss_pred EEecccCcceEEEEeeecceee----cchhhhhhh-------hcCCCCCCCCcc--cceeccccceeeeeeecCCCee
Q psy10619 170 VEKFIKNPRHIEIQGTTYKFLI----QTEKEFEYA-------KLLPPKPKLDET--KILHAPMPGLVKSVNCKVGDQI 234 (246)
Q Consensus 170 ve~~i~~g~e~~v~v~~d~~~v----~~~~~~~~~-------~~~~~~~~~~~~--~~l~sp~pg~i~~l~~~~G~~v 234 (246)
||+-+.|..|+..++++|.... .....++.. ..+.|.+..+++ +++|..+-.+|+-+++---+.+
T Consensus 574 vekSlkGwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcni 651 (1435)
T KOG0370|consen 574 VEKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNI 651 (1435)
T ss_pred ehhhhccccceEEEEEeccccchhhhcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccc
Confidence 9999998889999999987762 222223322 223466655544 7899999888888887544444
No 86
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=99.27 E-value=4.2e-11 Score=94.92 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=72.4
Q ss_pred cCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-----CCceeEE-eCCHHHHHHHHHHHHHH
Q psy10619 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-----GGKGMRI-ANNDQEAIEGFKLSSQE 158 (246)
Q Consensus 85 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-----g~~gv~~-v~~~~el~~~~~~~~~~ 158 (246)
.+....+++|+.+|||+|++. .+++.+++.++++.+|||+++|..+.. ...||.+ ++|.++++++++++...
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~--~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~ 87 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTR--LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRER 87 (222)
T ss_dssp E-HHHHHHHHHTTT------E--EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCee--EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHH
Confidence 467789999999999999975 799999999999999999999999765 2237777 78999999999999887
Q ss_pred HHhhcCC---CceEEEeccc-CcceEEEEeeecce
Q psy10619 159 AAASFGD---DRILVEKFIK-NPRHIEIQGTTYKF 189 (246)
Q Consensus 159 ~~~~~~~---~~~lve~~i~-~g~e~~v~v~~d~~ 189 (246)
.....+. .+++||++++ +|.|+.+++..|..
T Consensus 88 ~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~ 122 (222)
T PF13549_consen 88 VAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQ 122 (222)
T ss_dssp HHHH-TT----EEEEEE------EEEEEEEEEETT
T ss_pred HHHhCCCCccceEEEEEcccCCcEEEEEEEEECCC
Confidence 6653332 5799999999 89999999998863
No 87
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.23 E-value=6.9e-12 Score=95.23 Aligned_cols=85 Identities=26% Similarity=0.347 Sum_probs=44.2
Q ss_pred hcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhc
Q psy10619 84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF 163 (246)
Q Consensus 84 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~ 163 (246)
|.||.+++++|+++|||+|..+. .... ....+|+|+||.+|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~--~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLR--DSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCccc--cccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 68999999999999999994321 1111 12378999999999999999999999887665432
Q ss_pred CCCceEEEecccCcceEEEEeeeccee
Q psy10619 164 GDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 164 ~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
..++|+||+ |.++|+.++.++..
T Consensus 63 ---~~i~Qe~i~-G~~~Sv~~l~~~~~ 85 (161)
T PF02655_consen 63 ---LRIVQEFIE-GEPYSVSFLASGGG 85 (161)
T ss_dssp -----EEEE----SEEEEEEEEE-SSS
T ss_pred ---ceEEeeeeC-CEEeEEEEEEeCCc
Confidence 239999999 99999999987754
No 88
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=91.64 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII 109 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 109 (246)
.+..+.+++.+++....+...++.++.. ...+.|.+. ..++-++...++..-+|-.++..+.++|+|.|.++ .+
T Consensus 59 aiafLrd~Aekhglkg~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v 135 (415)
T COG3919 59 AIAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LV 135 (415)
T ss_pred HHHHHHHHHhhcCcCceEEEecCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Ee
Confidence 3578889999988775544333323322 222333222 23344899999999999999999999999999986 57
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCC-----ceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcce
Q psy10619 110 RDADHCVEIARDIGYPVMIKASAGGGG-----KGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH 179 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~-----~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e 179 (246)
+|..+. ...++.||+|+||..|++- .-.+.+.|.+|++.++..+..+ .+.++++||+||+||.|
T Consensus 136 ~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE 204 (415)
T COG3919 136 NSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGE 204 (415)
T ss_pred cchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCc
Confidence 765544 4678899999999988742 2345678999999998887654 34688999999998765
No 89
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.00 E-value=4.6e-09 Score=87.30 Aligned_cols=69 Identities=23% Similarity=0.362 Sum_probs=53.5
Q ss_pred CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh--CC-cEEEEeccCCCCceeEEeCCHH
Q psy10619 76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI--GY-PVMIKASAGGGGKGMRIANNDQ 146 (246)
Q Consensus 76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--~~-P~vvKp~~g~g~~gv~~v~~~~ 146 (246)
++.+...++.||..+..+|+++|||+|+++ .+.+.+...+.+.++ ++ |+|+||..|++|+|+.++++.+
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~ 98 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRK 98 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEecc
Confidence 666777889999999999999999999965 445444333333333 56 6999999999999999986653
No 90
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.96 E-value=2.7e-09 Score=89.06 Aligned_cols=102 Identities=22% Similarity=0.374 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC-CcEEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHH--
Q psy10619 87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEA-- 159 (246)
Q Consensus 87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~-- 159 (246)
.+..+++|+++|||+|+++ +..+.+++..++.++| .|+|+|+.-..|+| ||.++.|.+|+.++.++++...
T Consensus 5 EYqaKelf~~~GiPvp~g~--v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCce--eeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 5678999999999999986 7899999999999998 79999998777666 6899999999999999887611
Q ss_pred --HhhcCCCceEEEecccC-cceEEEEeeeccee
Q psy10619 160 --AASFGDDRILVEKFIKN-PRHIEIQGTTYKFL 190 (246)
Q Consensus 160 --~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~~ 190 (246)
.....-..+|||++++. .+||.+.++.|+..
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~ 116 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSS 116 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCC
Confidence 11111256899999984 45999999988764
No 91
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.93 E-value=1.2e-08 Score=88.02 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCC----ceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGG----KGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~----~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+.+..+++|+++|||+|++. .+++.+++.++++++||| +|+|.....++ .||.+..|.+++.++++++.....
T Consensus 4 ~E~eak~lL~~yGIpvp~~~--~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 4 HEYQAKELLASFGVAVPRGA--LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred cHHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchh
Confidence 35678999999999999976 789999999999999995 59998543333 378888999999999999886421
Q ss_pred --hhc-----CCCceEEEecccCcceEEEEeeecce
Q psy10619 161 --ASF-----GDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 161 --~~~-----~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
... .-..++||++++.++|+.+.+..|..
T Consensus 82 ~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~ 117 (392)
T PRK14046 82 VTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRK 117 (392)
T ss_pred hhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCC
Confidence 101 12469999999989999999998864
No 92
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.91 E-value=2.2e-09 Score=83.86 Aligned_cols=101 Identities=24% Similarity=0.369 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCc----eeEEeCCHHHHHHHHHHHHHHHHh
Q psy10619 87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGK----GMRIANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 87 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~----gv~~v~~~~el~~~~~~~~~~~~~ 161 (246)
.+..+++|+++|||+|++. ++++++++.+++..++.+ +|+||.-..|+| ||.+++|++|+.++..+++.....
T Consensus 4 EyqaK~ll~~~gi~vp~g~--~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGV--VATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SEE--EESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 5678999999999999976 789999999999999875 799998777666 688999999999999887653111
Q ss_pred -------hcCCCceEEEecccCcceEEEEeeecce
Q psy10619 162 -------SFGDDRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 162 -------~~~~~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
...-..+|||++++..+|+.+.++.|+.
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE 116 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence 0001468999999988899999887754
No 93
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.90 E-value=2.3e-08 Score=81.21 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=105.8
Q ss_pred hccceeEEcCCCCcCCCCCCH--HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHH
Q psy10619 14 KLADEAVCIGPPVAAQSYINV--DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESK 91 (246)
Q Consensus 14 ~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~ 91 (246)
..||+.+.+. +|.+. +.+.+..++ -++|+.-++.+.....+.....+.-+|++|+. ..+++-.|....+
T Consensus 59 ~~a~e~i~v~------~f~dil~~~iqe~L~~--~n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR-~lLrwE~~~~~~~ 129 (361)
T COG1759 59 PVADEVIIVD------KFSDILNEEIQEELRE--LNAIFIPHGSFVAYVGYDGIENEFEVPMFGNR-ELLRWEEDRKLEY 129 (361)
T ss_pred chhheEEEec------hhHHHhhHHHHHHHHH--cCeEEecCCceEEEecchhhhhcccCcccccH-hHhhhhcchhhHH
Confidence 3466777664 23321 233444555 34666555554444444446677889999765 6777777999999
Q ss_pred HHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh-hcCCCceEE
Q psy10619 92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA-SFGDDRILV 170 (246)
Q Consensus 92 ~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lv 170 (246)
.+|+++||+.|+ ...+++++ ..|+|||.....|++|.+++.|.+|+.+..+++.....- .-.-.++.|
T Consensus 130 ~lLekAgi~~P~----~~~~PeeI-------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~I 198 (361)
T COG1759 130 KLLEKAGLRIPK----KYKSPEEI-------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARI 198 (361)
T ss_pred HHHHHcCCCCCc----ccCChHHc-------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhcee
Confidence 999999999999 45777764 569999999999999999999999999998887752110 001246889
Q ss_pred EecccCcceEEEEee
Q psy10619 171 EKFIKNPRHIEIQGT 185 (246)
Q Consensus 171 e~~i~~g~e~~v~v~ 185 (246)
|||+- |..+....+
T Consensus 199 eEYv~-G~~f~~~yF 212 (361)
T COG1759 199 EEYVV-GAPFYFHYF 212 (361)
T ss_pred eEEee-ccceeeeee
Confidence 99998 655554443
No 94
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.81 E-value=4.1e-08 Score=84.97 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=77.9
Q ss_pred cCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh---CCcEEEEeccCCCCc-----------eeEEeCCHHHHHH
Q psy10619 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI---GYPVMIKASAGGGGK-----------GMRIANNDQEAIE 150 (246)
Q Consensus 85 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~---~~P~vvKp~~g~g~~-----------gv~~v~~~~el~~ 150 (246)
...+..+++|+++|||+|++. .+.+.+++.++++++ ++|+|+|+.-..||| ||.++++ +++.+
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~--va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~ 106 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGA--AASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE 106 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence 467788999999999999975 789999999999998 699999999544433 4666766 99999
Q ss_pred HHHHHHHHHH--hhc-----CCCceEEEecccCcceEEEEeeecc
Q psy10619 151 GFKLSSQEAA--ASF-----GDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 151 ~~~~~~~~~~--~~~-----~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
++++++.... ... .-..++|++.+..++|+.+.+..|.
T Consensus 107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 9999876411 100 0135786666666899999999997
No 95
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.77 E-value=1.8e-08 Score=79.34 Aligned_cols=111 Identities=22% Similarity=0.200 Sum_probs=82.7
Q ss_pred CCCEEcc-ccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC
Q psy10619 45 RADAVHP-GYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG 123 (246)
Q Consensus 45 ~~d~v~~-~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~ 123 (246)
++|+.+. ..+.......+.+..++. +..+|+++++++.|.||+++.+.|+.+ +++|+++. ....+
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e------------~~~~~ 138 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE------------WAEEP 138 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc------------cccCC
Confidence 5775432 232222334667777777 778899999999999999999999999 99999641 11234
Q ss_pred CcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 124 ~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
--.|+||++|.||.|+.+..+..++ .|+|+||+ |.++||. +.+|..
T Consensus 139 ~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIe-G~~lSVS-L~~GEk 184 (307)
T COG1821 139 KKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIE-GEHLSVS-LSVGEK 184 (307)
T ss_pred ceEEecccccCCcceeeccCCCcch-------------------hhHHHhcC-CcceEEE-EecCCc
Confidence 4689999999999999877664442 57899999 9999999 444433
No 96
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.72 E-value=5.1e-08 Score=79.58 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHhC--CCE-EccccccCCCCHHHHHHHHHcCCeEeCCCHH-HHHHhcCHHHHHHHHHHhCCCCCCCCcc
Q psy10619 32 INVDKIIDAIRQTR--ADA-VHPGYGFLSENASFVSRLKEEGVVFIGPTAE-CIRGMGDKLESKKLAKEAGVNIIPGFNG 107 (246)
Q Consensus 32 ~~~~~l~~~~~~~~--~d~-v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~-~~~~~~dK~~~~~~l~~~gip~p~~~~~ 107 (246)
.+.++|++++.+.. +|+ +++..++-.. +.--+.+.++.|+++. ....+.||..+.+.+..+|+|.|+..
T Consensus 68 ~de~~li~~~~~~~~dvD~~ii~~sg~e~l-----~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~-- 140 (389)
T COG2232 68 LDEQKLIEAAEDLAEDVDAPIIPFSGFEAL-----RTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK-- 140 (389)
T ss_pred CCHHHHHHHHHhhhhhcceeeeeccccccc-----cccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--
Confidence 57789999988754 555 3444332111 1112456777888887 88889999999999999999999853
Q ss_pred ccCCHHHHHHHHHHhCCcEEEEeccCCCCc-eeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeee
Q psy10619 108 IIRDADHCVEIARDIGYPVMIKASAGGGGK-GMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTT 186 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~-gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~ 186 (246)
.. +. ...-.+++|+||.+|+||. ++...+ ++. ...++++|+||+ |+.+|+.++.
T Consensus 141 ~~---e~----~~~gekt~IlKPv~GaGG~~el~~~~--Ee~---------------~~~~~i~Qefi~-G~p~Svs~is 195 (389)
T COG2232 141 KI---EP----LEEGEKTLILKPVSGAGGLVELVKFD--EED---------------PPPGFIFQEFIE-GRPVSVSFIS 195 (389)
T ss_pred hh---hh----hhhcceeeEEeeccCCCceeeecccc--ccc---------------CCcceehhhhcC-CceeEEEEEe
Confidence 11 11 1222368999999999884 332111 111 025799999999 9999999999
Q ss_pred ccee
Q psy10619 187 YKFL 190 (246)
Q Consensus 187 d~~~ 190 (246)
++..
T Consensus 196 ~g~~ 199 (389)
T COG2232 196 NGSD 199 (389)
T ss_pred cCcc
Confidence 8765
No 97
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.56 E-value=2.5e-07 Score=76.60 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=68.4
Q ss_pred CCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcc---------ccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCH
Q psy10619 76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNG---------IIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANND 145 (246)
Q Consensus 76 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~---------~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~ 145 (246)
++.+...++.||..+++++.++|||+|+.+.. ...+.+++.++++.. ..++|+||..|++|+|+.+++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 66788889999999999999999999993210 124567777777664 57999999999999999987554
Q ss_pred HH--HHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619 146 QE--AIEGFKLSSQEAAASFGDDRILVEKFIKN 176 (246)
Q Consensus 146 ~e--l~~~~~~~~~~~~~~~~~~~~lve~~i~~ 176 (246)
+. +............. ....++|||++|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~liqe~i~q 127 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-LGGKDYLIQERIEQ 127 (285)
T ss_pred cCcccccchhHHHHHHHh-cCCccEEEEecccC
Confidence 31 11111111111111 11128999999973
No 98
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.55 E-value=5e-07 Score=77.49 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHh-----CCCCCCCCcccc-CCHHHHHHHHHH---hCCc-EEEEeccCCCCc----eeEEeCCHHHHHHH
Q psy10619 86 DKLESKKLAKEA-----GVNIIPGFNGII-RDADHCVEIARD---IGYP-VMIKASAGGGGK----GMRIANNDQEAIEG 151 (246)
Q Consensus 86 dK~~~~~~l~~~-----gip~p~~~~~~~-~~~~~~~~~~~~---~~~P-~vvKp~~g~g~~----gv~~v~~~~el~~~ 151 (246)
..+..+++|+++ |||+|.+. ++ ++.+++.+++++ ++.| +||||.-..|+| ||.+++|++|+.++
T Consensus 7 ~EyqaK~ll~~~~~~~~gipvP~~~--v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~ 84 (423)
T PLN02235 7 REYDSKRLLKEHLKRLAGIDLPIRS--AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATF 84 (423)
T ss_pred cHHHHHHHHHHhhcccCCCCCCCCe--eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHH
Confidence 356678889998 99999975 45 899999998888 7765 699999877777 58889999999999
Q ss_pred HHHHHHHHHhhc----CCCceEEEecccCcceEEEEeeeccee
Q psy10619 152 FKLSSQEAAASF----GDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 152 ~~~~~~~~~~~~----~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
.++++....... .-..+|||++++.-+||.+.++.|+..
T Consensus 85 a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~ 127 (423)
T PLN02235 85 VKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLG 127 (423)
T ss_pred HHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCC
Confidence 999876321100 114689999998889999999887654
No 99
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.28 E-value=2.8e-06 Score=64.82 Aligned_cols=79 Identities=19% Similarity=0.292 Sum_probs=48.7
Q ss_pred CCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCH-HHHHHHHHHHHHHHHhhcCCCceEEEecccC--c
Q psy10619 101 IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND-QEAIEGFKLSSQEAAASFGDDRILVEKFIKN--P 177 (246)
Q Consensus 101 ~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lve~~i~~--g 177 (246)
+|+++ +.++.+++.++.++.+. +|+||..|.||+||+++... ..+...++.+. ..+...+++|+|++. .
T Consensus 12 ~P~T~--vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~-----~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPTL--VSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLT-----KNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--EE--EES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHT-----TTTTS-EEEEE--GGGGG
T ss_pred CcCEE--EECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHH-----hcCCccEEEEeccccccC
Confidence 46754 66789999999999988 99999999999999998653 33444444332 122457999999985 2
Q ss_pred ceEEEEeeec
Q psy10619 178 RHIEIQGTTY 187 (246)
Q Consensus 178 ~e~~v~v~~d 187 (246)
-|.++-++..
T Consensus 84 GDkRii~~nG 93 (173)
T PF02955_consen 84 GDKRIILFNG 93 (173)
T ss_dssp -EEEEEEETT
T ss_pred CCEEEEEECC
Confidence 2777776644
No 100
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=98.27 E-value=8.3e-07 Score=65.46 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=31.4
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
...++|||+|++.++.+++||.|++||+||+||
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence 356999999999999999999999999999999
No 101
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=98.02 E-value=8.4e-06 Score=48.90 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=29.9
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.+|.+|.|.++.++.||.|++||+|++|+-
T Consensus 4 ~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 4 TIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 47899999999999999999999999999974
No 102
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.00 E-value=2e-05 Score=65.35 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=76.0
Q ss_pred HHHHHHH-cCCeEeCCCHHHHHHhcCHHHHHHHHHHh-------CCCCCCCCccccC-CHHHHHHHH--HHhCCcEEEEe
Q psy10619 62 FVSRLKE-EGVVFIGPTAECIRGMGDKLESKKLAKEA-------GVNIIPGFNGIIR-DADHCVEIA--RDIGYPVMIKA 130 (246)
Q Consensus 62 ~~~~~~~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp 130 (246)
+.+..++ -.+.++ .+.++++.+.|+..+.+++.++ .+.+|++. .+. +.+++.+.. +.+.||+|+||
T Consensus 69 l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agL~fPlI~KP 145 (307)
T PF05770_consen 69 LEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFV--VINSDAESLPELLKEAGLKFPLICKP 145 (307)
T ss_dssp HHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EE--EESSSHCCHHHHHHCTTS-SSEEEEE
T ss_pred HHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceE--EEcCCHHHHHHHHHHCCCcccEEeee
Confidence 3344444 356666 8889999999999999998876 66788854 444 444454444 35789999999
Q ss_pred ccCCC---CceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeecceeec
Q psy10619 131 SAGGG---GKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTYKFLIQ 192 (246)
Q Consensus 131 ~~g~g---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d~~~v~ 192 (246)
....| |-.+.++.+.+.|.+. ..++++||||+- |.-|-|-++|+...+.
T Consensus 146 lvA~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~v~~v 198 (307)
T PF05770_consen 146 LVACGSADSHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDKVFVV 198 (307)
T ss_dssp SB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTEEEEE
T ss_pred hhhcCCccceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCEEEEE
Confidence 87654 4578999999988542 367999999976 6788899998877643
No 103
>PRK06748 hypothetical protein; Validated
Probab=97.95 E-value=1e-05 Score=53.58 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=29.8
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.|||||.+.+..++.||.|++||+|++||-
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 58899999999999999999999999999983
No 104
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.91 E-value=1.3e-05 Score=70.19 Aligned_cols=39 Identities=38% Similarity=0.505 Sum_probs=34.9
Q ss_pred CCCCCcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 206 KPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 206 ~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
+......+.+.+||||+|.++.|+.|+.|.+||+|+|||
T Consensus 569 ~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE 607 (645)
T COG4770 569 KVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE 607 (645)
T ss_pred cccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence 334455688999999999999999999999999999998
No 105
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=97.85 E-value=0.00034 Score=57.35 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=77.3
Q ss_pred HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhC-CC--CCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEe
Q psy10619 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAG-VN--IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142 (246)
Q Consensus 66 ~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~g-ip--~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v 142 (246)
-++.|++++.+. ..||+.+.++|.+.. +. .|++. .+.+.+++.+++...+ -++|||..|+.|+||.++
T Consensus 4 k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~--~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETE--LLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCce--EcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 356789998653 589999999999864 33 46743 6788899988888765 699999999999998654
Q ss_pred C----------------------CHHHHHHHHHHHHHHHHhhcCCCceEEEecccC----cc--eEEEEeeeccee
Q psy10619 143 N----------------------NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN----PR--HIEIQGTTYKFL 190 (246)
Q Consensus 143 ~----------------------~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~----g~--e~~v~v~~d~~~ 190 (246)
+ +.+++...+... .+...+|||+.|+- |+ +++|.+-.++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G 143 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSG 143 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCC
Confidence 2 234555555443 23568999999953 44 566666655443
No 106
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.81 E-value=2.7e-05 Score=50.47 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=29.2
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.+++|++|.+.++.++.||.|++||+|+++|
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve 34 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLE 34 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 4899999999999999999999999999987
No 107
>KOG0238|consensus
Probab=97.56 E-value=9.5e-05 Score=64.12 Aligned_cols=35 Identities=46% Similarity=0.775 Sum_probs=32.0
Q ss_pred CcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 210 DETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 210 ~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.....+.+||||.|.++.++.||.|++||.++|||
T Consensus 599 ~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 599 DGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred CCCCceecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 34466899999999999999999999999999997
No 108
>KOG0369|consensus
Probab=97.50 E-value=0.00021 Score=64.05 Aligned_cols=42 Identities=33% Similarity=0.532 Sum_probs=36.6
Q ss_pred CCCCCCCCcccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 203 LPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 203 ~~~~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..|+..+...+.+.+||||.+..+.++.|+.|+|||+|+||-
T Consensus 1097 ~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1097 TRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred ccccCCCCCcccccCCCCCceEEEEEecCceecCCCceEeee
Confidence 345556667788999999999999999999999999999983
No 109
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.49 E-value=0.0019 Score=56.46 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHhCCCEEccccc------------c------------------CCCCHHHHHHHHHcCCeEeCCCHHHH
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYG------------F------------------LSENASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~------------~------------------~~e~~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
...+.+.+..+++++++++.... . ..+...+.++....-+.++|+ -..
T Consensus 200 ~Ef~~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vgs--frs 277 (445)
T PF14403_consen 200 SEFEVFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVGS--FRS 277 (445)
T ss_pred chHHHHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEecc--hhh
Confidence 34577788888889988874421 0 011112333444445565543 344
Q ss_pred HHhcCHHHHHHHHHHhCCC------------CCCCCccccCC--------HHHHHHHHHHhCCcEEEEeccCCCCceeEE
Q psy10619 82 RGMGDKLESKKLAKEAGVN------------IIPGFNGIIRD--------ADHCVEIARDIGYPVMIKASAGGGGKGMRI 141 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip------------~p~~~~~~~~~--------~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~ 141 (246)
.++.||..+.-+-....-. ..|+ ++.++. ..++.+.+....--+|+||.++.||+||++
T Consensus 278 ~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~-T~~l~~~~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~ 356 (445)
T PF14403_consen 278 QLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPW-TRLLTAGRTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYI 356 (445)
T ss_pred hhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCc-eEEEcCccccccccchhHHHHHHhchhcEEeccccccCCCCeEE
Confidence 5566777655443322211 1122 123333 345555555555679999999999999988
Q ss_pred e--CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619 142 A--NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176 (246)
Q Consensus 142 v--~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~ 176 (246)
- .++++.+++++++. .+++|+|||+.-
T Consensus 357 G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~ 385 (445)
T PF14403_consen 357 GWETSPEEWEAALEEAA--------REPYILQEYVRP 385 (445)
T ss_pred CCcCCHHHHHHHHHHHh--------cCCcEEEEEecC
Confidence 4 57888888888865 368999999984
No 110
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.46 E-value=0.00018 Score=46.46 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=25.3
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.+.+|++|.+.+..++.||.|++||+|+++|
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3678888888888888888888888888876
No 111
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.44 E-value=0.00025 Score=51.32 Aligned_cols=33 Identities=36% Similarity=0.614 Sum_probs=31.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+++||+|.+.++.++.||.|++||.|++||-
T Consensus 62 ~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 62 DAMPSPMPGTILKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred cEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 569999999999999999999999999999983
No 112
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.43 E-value=0.00025 Score=52.97 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=31.7
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
...+++|++|.+.++.++.||.|++||.|++||-
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEa 117 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEA 117 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEee
Confidence 3569999999999999999999999999999984
No 113
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=97.40 E-value=0.00024 Score=48.86 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHH
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRG 83 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~ 83 (246)
+..+.+.++++|+++++|.++++. |.+ .+.+.|++.|++++||+.++.++
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGP----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGP----EAPLVAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESS----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECC----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence 357889999999999999999996 333 46889999999999999888765
No 114
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.31 E-value=0.00055 Score=62.12 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=31.5
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
...+.+||||.+.++.++.||.|++||+|++||
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE 549 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 457999999999999999999999999999998
No 115
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.30 E-value=0.00056 Score=61.99 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=31.2
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.+.+.+||||.+.++.++.||.|++||+|++||
T Consensus 525 ~~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE 557 (596)
T PRK14042 525 PGDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE 557 (596)
T ss_pred CCeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence 356999999999999999999999999999998
No 116
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=97.05 E-value=0.00087 Score=50.37 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=30.0
Q ss_pred cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~ 245 (246)
..++|||+|.+.+ ..++.||.|++||+||+||-
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence 4699999999997 48999999999999999984
No 117
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=97.03 E-value=0.00071 Score=44.13 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.9
Q ss_pred ceeccccceeee------eeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKS------VNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~------l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+++|++|.... ..++.||.|++||+|+.||-
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet 39 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIET 39 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEES
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEc
Confidence 367888887666 99999999999999999983
No 118
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=97.02 E-value=0.0066 Score=50.52 Aligned_cols=82 Identities=16% Similarity=0.326 Sum_probs=64.7
Q ss_pred CCCCCCccccCCHHHHHHHHHHh--CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCc
Q psy10619 100 NIIPGFNGIIRDADHCVEIARDI--GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP 177 (246)
Q Consensus 100 p~p~~~~~~~~~~~~~~~~~~~~--~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g 177 (246)
-+-+++ .+.+.+++..+...+ +.|+=+||..+.||+|..++.+.++|+.++..+-..... ..++++|+-+..-
T Consensus 113 ~vL~G~--tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~ 187 (355)
T PF11379_consen 113 AVLPGY--TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEV 187 (355)
T ss_pred hccCCc--cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCC
Confidence 344455 478899998887765 679999999999999999999999999999876543322 3678999999866
Q ss_pred ceEEEEeee
Q psy10619 178 RHIEIQGTT 186 (246)
Q Consensus 178 ~e~~v~v~~ 186 (246)
.-|||+-+.
T Consensus 188 ~T~SVGqv~ 196 (355)
T PF11379_consen 188 VTYSVGQVR 196 (355)
T ss_pred ceeeEEEEE
Confidence 678887554
No 119
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=96.97 E-value=0.0013 Score=60.41 Aligned_cols=32 Identities=41% Similarity=0.703 Sum_probs=30.7
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.-+-+||||.+.++.|+.||.|++||.|++||
T Consensus 1080 ~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1080 GHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred cccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 56999999999999999999999999999998
No 120
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.95 E-value=0.002 Score=58.68 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=31.6
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
...+.+||+|.+.++.++.||.|++||+|++||-
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3479999999999999999999999999999983
No 121
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=96.93 E-value=0.0084 Score=48.42 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=65.7
Q ss_pred HHHHhcCHHHHHHHHHHhC--CCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHH---HHHHHHH
Q psy10619 80 CIRGMGDKLESKKLAKEAG--VNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQE---AIEGFKL 154 (246)
Q Consensus 80 ~~~~~~dK~~~~~~l~~~g--ip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~e---l~~~~~~ 154 (246)
....+.||...|+++++.+ ...||.+ .+.++.+++. ...+.-++||||..|+|+..+....+.-+ +...+..
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~ 90 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNR 90 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHH
Confidence 3456899999999999986 2334532 3566666653 34566789999999999888877544333 3322322
Q ss_pred HHHHHHh------hcC--CCceEEEecccC--c---ceEEEEeeec
Q psy10619 155 SSQEAAA------SFG--DDRILVEKFIKN--P---RHIEIQGTTY 187 (246)
Q Consensus 155 ~~~~~~~------~~~--~~~~lve~~i~~--g---~e~~v~v~~d 187 (246)
.+..... .+. ...++||+++.. + .+|.+-++..
T Consensus 91 wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G 136 (239)
T PF14305_consen 91 WLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNG 136 (239)
T ss_pred HhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECC
Confidence 2211000 010 257899999965 3 3677776654
No 122
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=96.90 E-value=0.0015 Score=52.53 Aligned_cols=33 Identities=33% Similarity=0.620 Sum_probs=30.6
Q ss_pred cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.+||+|.+.+ +.++.||.|++||+|++||-
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEA 237 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEA 237 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEe
Confidence 5699999999999 49999999999999999984
No 123
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.86 E-value=0.0017 Score=41.79 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.++..|.+.++.++.||.|..||+|+.||
T Consensus 39 ~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 39 IPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred ceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 35899999999999999999999999999997
No 124
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.84 E-value=0.0023 Score=62.66 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=32.1
Q ss_pred cccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
....+.+||||.+.++.++.||.|++||+|++||-
T Consensus 1075 ~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1075 NPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred CCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 34569999999999999999999999999999983
No 125
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.76 E-value=0.002 Score=40.71 Aligned_cols=31 Identities=45% Similarity=0.682 Sum_probs=27.7
Q ss_pred eeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
++||+.|.+.+..++.|+.|++||.|+.+|.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 6789999999999999999999999998873
No 126
>PRK07051 hypothetical protein; Validated
Probab=96.75 E-value=0.0018 Score=42.93 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=30.1
Q ss_pred cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+++|++|.+.+ +.++.||.|++||+++.+|-
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~ 43 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEV 43 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEE
Confidence 3589999999999 99999999999999999984
No 127
>KOG2799|consensus
Probab=96.74 E-value=0.01 Score=49.72 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=61.1
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC-cEEEEeccCCCCc-----------eeEEeCCHHHHH
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKASAGGGGK-----------GMRIANNDQEAI 149 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~g~g~~-----------gv~~v~~~~el~ 149 (246)
.+....+...++|+++|+.+|+++ +..|++++..++++++. -+|||...-.||+ ||.++.+++|.+
T Consensus 22 ~L~~hey~~~~ll~~~Gv~vp~g~--vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak 99 (434)
T KOG2799|consen 22 SLGIHEYRSAALLRKYGINVPLGY--VAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAK 99 (434)
T ss_pred hhhHHHHHHHHHHHHcCCCCCCCc--ccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHH
Confidence 344456677899999999999987 78999999999999974 5999998765554 688999999998
Q ss_pred HHHHHHHH
Q psy10619 150 EGFKLSSQ 157 (246)
Q Consensus 150 ~~~~~~~~ 157 (246)
....++..
T Consensus 100 ~va~qmiG 107 (434)
T KOG2799|consen 100 AVASQMIG 107 (434)
T ss_pred HHHHHhhc
Confidence 88877764
No 128
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.64 E-value=0.002 Score=48.42 Aligned_cols=33 Identities=33% Similarity=0.662 Sum_probs=30.2
Q ss_pred cceeccccceeee-------eeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKS-------VNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~-------l~~~~G~~v~~g~~~~v~e~ 245 (246)
..++|||.|++.. ..++.||.|++||+||+||-
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEa 119 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEA 119 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEe
Confidence 4699999999987 67999999999999999984
No 129
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.53 E-value=0.005 Score=60.20 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=31.2
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
...+.+||+|.+.++.++.||.|++||+|++||
T Consensus 1074 ~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235 1074 PAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred CceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence 356999999999999999999999999999998
No 130
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.51 E-value=0.0042 Score=40.07 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=29.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+++|..|.+.++.++.||.|+.||.|++|+
T Consensus 40 ~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 40 IPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred eEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 45899999999999999999999999999985
No 131
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.48 E-value=0.0031 Score=46.50 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=31.8
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.+.||..|.+.++.++.||.|..||+|++||+
T Consensus 107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 4679999999999999999999999999999985
No 132
>PRK07051 hypothetical protein; Validated
Probab=96.34 E-value=0.0055 Score=40.54 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=29.6
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.+++|..|.+.++.++.|+.|+.||.|+.||
T Consensus 49 ~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 49 EVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 5899999999999999999999999999987
No 133
>PRK06748 hypothetical protein; Validated
Probab=96.30 E-value=0.0065 Score=40.31 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.6
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.+|..|.+.++.++.||.|..||.|++||-
T Consensus 43 ~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 43 VEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 358999999999999999999999999999973
No 134
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.13 E-value=0.0049 Score=43.64 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=48.3
Q ss_pred hccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHH
Q psy10619 14 KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL 93 (246)
Q Consensus 14 ~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~ 93 (246)
.++|+++.++... ..-.+.+.+..++ -++|+.-++.+.+....-..-.+..+|++|+. ..++.-.|...-+.+
T Consensus 39 ~~iDe~i~~d~f~----di~~~~~q~~L~~--~N~I~VPhgSfv~Y~G~d~ie~~~~vP~FGNR-~lLrwEseR~~~~~l 111 (124)
T PF06849_consen 39 PFIDEVIVLDSFS----DILSEEVQEKLRE--MNAIFVPHGSFVAYVGYDRIENEFKVPIFGNR-NLLRWESERDKERNL 111 (124)
T ss_dssp TT-SEEEEESSCG----HCCSHHHHHHHHH--TTEEE--BTTHHHHH-HHHHHHT-SS-EES-C-CGGHCCCSHHHHHHH
T ss_pred CcCcEEEEeCCHH----HHHhHHHHHHHHH--CCeEEecCCCeeEeecHHHHhhcCCCCeecCh-HHHHhhhhhhhHHHH
Confidence 3789999885211 1112456666666 34777666655443333333344999999876 566776788888999
Q ss_pred HHHhCCCCCCC
Q psy10619 94 AKEAGVNIIPG 104 (246)
Q Consensus 94 l~~~gip~p~~ 104 (246)
|+++|||.|+.
T Consensus 112 L~~AgI~~P~~ 122 (124)
T PF06849_consen 112 LEKAGIPMPRK 122 (124)
T ss_dssp HHHTT-BB--B
T ss_pred HHHcCCCCCcc
Confidence 99999999984
No 135
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.00 E-value=0.016 Score=52.92 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=32.1
Q ss_pred cccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
....+.+||+|.+.++.++.||.|++||+|++||-
T Consensus 521 ~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~iea 555 (592)
T PRK09282 521 APGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEA 555 (592)
T ss_pred CCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEec
Confidence 34679999999999999999999999999999983
No 136
>KOG3895|consensus
Probab=95.98 E-value=0.024 Score=47.41 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=86.8
Q ss_pred HHHhCCCEEccccccC--CC--C-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHH-HHH---HHHHhC---CCCCCCCccc
Q psy10619 41 IRQTRADAVHPGYGFL--SE--N-ASFVSRLKEEGVVFIGPTAECIRGMGDKLE-SKK---LAKEAG---VNIIPGFNGI 108 (246)
Q Consensus 41 ~~~~~~d~v~~~~~~~--~e--~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~-~~~---~l~~~g---ip~p~~~~~~ 108 (246)
.|.+.+|+|+..-+.+ .. + ..+...+.-.|+|.+ ++...+-.+-||.. +++ +.+..| +|..+..+
T Consensus 151 ~RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~-- 227 (488)
T KOG3895|consen 151 VRSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF-- 227 (488)
T ss_pred eeeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee--
Confidence 4667788888774321 22 2 245566788999988 77777666666654 333 334455 55544221
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619 109 IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 109 ~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
.-+- ......-.||+|||--.+..|.|-.+|+|.+|+.+.-.-+ +.. ....-+|.||....++.|+=++..
T Consensus 228 yPnH---K~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svv-al~-----~Tyat~epFiDaKYDiriQKIG~n 298 (488)
T KOG3895|consen 228 YPNH---KEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVV-ALT-----KTYATAEPFIDAKYDIRIQKIGHN 298 (488)
T ss_pred cCCc---hhhccCCCCcEEEEecccccccceeeecchhhhHhHHHHH-HHH-----hhhhhccccccccceeehhhhhhh
Confidence 1121 2223344699999999999999999999998876543222 111 244668999986667888777655
Q ss_pred ee
Q psy10619 189 FL 190 (246)
Q Consensus 189 ~~ 190 (246)
+.
T Consensus 299 YK 300 (488)
T KOG3895|consen 299 YK 300 (488)
T ss_pred HH
Confidence 44
No 137
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.65 E-value=0.016 Score=37.69 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=29.3
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+.||..|.+.++.++.||.|..||.|++|
T Consensus 44 ~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 44 MEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred eEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999999999987
No 138
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.55 E-value=0.014 Score=57.61 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=31.3
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
...+.|||+|.++++.++.||.|++||+|++||
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999998
No 139
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=95.22 E-value=0.13 Score=39.71 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=62.0
Q ss_pred CHHHHHHhcCHHHH----HHHHHHh---CCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHH
Q psy10619 77 TAECIRGMGDKLES----KKLAKEA---GVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149 (246)
Q Consensus 77 ~~~~~~~~~dK~~~----~~~l~~~---gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~ 149 (246)
+..++-.+.||... .++.+++ .+|..+.. ...+..+. .....||+|||--...+|.|-.+++|..++.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~q 76 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQ 76 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHHH
Confidence 44566667777542 2233344 45554422 13333332 2335799999999999999999999999887
Q ss_pred HHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecceeecc
Q psy10619 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQT 193 (246)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~v~~ 193 (246)
+...-+... +.-+.+|+||.-..++.++-+++.....+
T Consensus 77 Di~sll~~~------~~Y~T~EPfId~kyDirvqkIG~~ykA~~ 114 (203)
T PF02750_consen 77 DIASLLAIT------KDYATTEPFIDAKYDIRVQKIGNNYKAYM 114 (203)
T ss_dssp HHHHHHHHH------TS-EEEEE---EEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHhc------CceEEeeccccceeEEEEEEEcCeEEEEE
Confidence 765544321 35678999998677889988887766443
No 140
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.16 E-value=0.029 Score=35.20 Aligned_cols=31 Identities=42% Similarity=0.648 Sum_probs=28.7
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+++|..|.+..+.++.|+.|..|+.|+.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4599999999999999999999999999875
No 141
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.06 E-value=0.024 Score=48.09 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=30.7
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
-.+.++..|.+.++.++.||.|++||+|+.|+-
T Consensus 43 ~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 43 LQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred EEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 458999999999999999999999999999974
No 142
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=94.74 E-value=0.03 Score=46.61 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=23.7
Q ss_pred cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176 (246)
Q Consensus 125 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~ 176 (246)
-+|+||..++.|+|+.++++.+++.+. .......++||+||+.
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~ 109 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIEN 109 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SS
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCC
Confidence 489999999999999999999888654 0122578999999974
No 143
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.62 E-value=0.037 Score=47.28 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=30.6
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
-.+.++++|.|.++.++.||.|++||.|+.|+.
T Consensus 49 v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 49 VHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred EEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 458899999999999999999999999999974
No 144
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=94.58 E-value=0.039 Score=46.43 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
-.+.++..|.+.++.++.||.|++||.|+.|+-
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 348889999999999999999999999999973
No 145
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=94.43 E-value=0.049 Score=35.50 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.7
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 30 ~~vGi~l~~k~Gd~V~~Gd~l~~i 53 (75)
T PF07831_consen 30 PAVGIELHKKVGDRVEKGDPLATI 53 (75)
T ss_dssp TT-EEEESS-TTSEEBTTSEEEEE
T ss_pred cCcCeEecCcCcCEECCCCeEEEE
Confidence 466778999999999999999986
No 146
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=94.20 E-value=0.85 Score=41.86 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=95.3
Q ss_pred HHHHH-HHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHH--------------------------hcCH
Q psy10619 35 DKIID-AIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRG--------------------------MGDK 87 (246)
Q Consensus 35 ~~l~~-~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~--------------------------~~dK 87 (246)
+.++. ...+.+...++..++. .......+.+++.|++++..+..+... ..++
T Consensus 395 ~~~~~~~~~~~~k~~v~~~~gg-~~~~~~~~~l~~~gip~~~~pe~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (598)
T COG1042 395 EAIIRATAKKRGKPVVVSSMGG-ESSEKARRLLEEAGIPTYPTPERAVKALSALARYRRWLKKLRETPVFEGGGGTTLDE 473 (598)
T ss_pred HHHHHhhhhhCCCceEEEecCC-cchHHHHHHhhhcCCCCccCchHHHHHHHHHHHHHHHHHhhccCcccccCCccccCc
Confidence 44444 3445555666655544 222344567889999988655554422 1367
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCC-----CCceeEEeCCHHHHHHHHHHHHHHHHhh
Q psy10619 88 LESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG-----GGKGMRIANNDQEAIEGFKLSSQEAAAS 162 (246)
Q Consensus 88 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~-----g~~gv~~v~~~~el~~~~~~~~~~~~~~ 162 (246)
...+++++.+|+++|++ ...+.+++..+++.++ |-.+.. .-.|+.+-.+..++.+++..+... .
T Consensus 474 ~e~~~~l~~~gi~~~~~---~~~~~~ea~~~a~~~~-----Kl~s~~i~hksev~gv~l~~~~~~v~~a~~~~~~~--p- 542 (598)
T COG1042 474 PEAKELLEAYGIPVPAT---IASTLDEAVHIAESIG-----KLRSPDIDHKSEVGGVMLNRTADAVEKAADDILAR--P- 542 (598)
T ss_pred hhhhhHHHHhcCccccc---ccCCHHHHHHHHHHhh-----hccCCccchhhhccceeecCcHHHHHHHHHhHhcc--c-
Confidence 77899999999999995 5789999999888887 555433 112444447788999998888765 2
Q ss_pred cCCCceEEEecccCcceEEEEeeecc
Q psy10619 163 FGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 163 ~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
..-..++||++.. .|..+.+..|.
T Consensus 543 a~i~g~lvq~m~~--~E~~vgv~~dp 566 (598)
T COG1042 543 ARIAGVLVQTMAK--LELIVGVKNDP 566 (598)
T ss_pred chhhhhhhHhhhh--ccceeeccCCC
Confidence 2236789999988 78888877664
No 147
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.04 E-value=0.077 Score=38.48 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=29.7
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
...+.+|..|.+.++.++.||.|..||.|+.|
T Consensus 98 e~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 98 ENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred cEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 35699999999999999999999999999886
No 148
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=93.70 E-value=0.072 Score=45.97 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.5
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.-.+.+++.|.+.++.++.||.|++||.|+.|+
T Consensus 61 ~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld 93 (370)
T PRK11578 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID 93 (370)
T ss_pred EEEEecccceEEEEEEcCCCCEEcCCCEEEEEC
Confidence 346899999999999999999999999999986
No 149
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=93.69 E-value=0.098 Score=39.31 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=30.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.++..|.+.++.++.|+.|.-||.|+.||
T Consensus 125 ~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 125 NEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred eEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 45899999999999999999999999999986
No 150
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=93.56 E-value=0.08 Score=46.05 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
-.+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus 62 v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 358899999999999999999999999999973
No 151
>KOG1447|consensus
Probab=93.51 E-value=0.68 Score=37.63 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCc-EEEEeccCCCCc-----------eeEEeCCHHHHHHHHH
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGK-----------GMRIANNDQEAIEGFK 153 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P-~vvKp~~g~g~~-----------gv~~v~~~~el~~~~~ 153 (246)
..+..+++|.++|+.+-+++ +.++..++.+.+.+++-| .|+|..--.||+ ||.+-.+++..-+..+
T Consensus 23 qEfQSK~~l~k~Gv~vQ~F~--Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~ 100 (412)
T KOG1447|consen 23 QEFQSKEILSKNGVRVQRFF--VADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAK 100 (412)
T ss_pred HHhhhHHHHHhcCeeEEEEE--EecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHH
Confidence 35567889999999998864 677888888888888765 899987655554 3566678888888888
Q ss_pred HHHHHHHhhc--CC-----CceEEEecccCcceEEEEeeecce
Q psy10619 154 LSSQEAAASF--GD-----DRILVEKFIKNPRHIEIQGTTYKF 189 (246)
Q Consensus 154 ~~~~~~~~~~--~~-----~~~lve~~i~~g~e~~v~v~~d~~ 189 (246)
++.......- +. ..++|-+-+...+|-.+.++.|+.
T Consensus 101 qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe 143 (412)
T KOG1447|consen 101 QMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRE 143 (412)
T ss_pred HHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccc
Confidence 8766432211 11 356777777777887777776654
No 152
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=93.49 E-value=0.084 Score=44.78 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=30.0
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.++++|.|.++.++.||.|++||+|..|+-
T Consensus 45 ~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 45 NLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 58999999999999999999999999999863
No 153
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.41 E-value=0.11 Score=39.02 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=30.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..++++..|.+.++.++.|+.|..||.|+.||
T Consensus 124 ~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 124 NEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred eEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 46899999999999999999999999999986
No 154
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=93.38 E-value=0.087 Score=45.95 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.0
Q ss_pred ccceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 212 TKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 212 ~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.-.+.+...|.|.++.++.||.|++||.|+.|+.
T Consensus 65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 3458999999999999999999999999999974
No 155
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=93.32 E-value=0.092 Score=45.59 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=30.5
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
-.+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 458999999999999999999999999999974
No 156
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.26 E-value=0.092 Score=45.93 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=29.8
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.++.+|.|.++.|+.||.|++||+|+.|+-
T Consensus 45 ~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 45 VVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred ecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 47899999999999999999999999999974
No 157
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=93.09 E-value=0.13 Score=32.98 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=28.4
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+++|..|.+.+++.+.|+.+..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 3589999999999999999999999999864
No 158
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=92.90 E-value=0.12 Score=44.97 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=30.7
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.+++.|.+.++.++.||.|++||.|+.|+-
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 469999999999999999999999999999974
No 159
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=92.89 E-value=0.11 Score=43.56 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.3
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.+|..|.+.++.++.||.|++||+|+.|+.
T Consensus 27 ~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 27 ADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 358999999999999999999999999999864
No 160
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.67 E-value=0.13 Score=45.77 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=30.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.++..|.|.++.|+.||.|++||.|+.|+-
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 358889999999999999999999999999864
No 161
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.66 E-value=0.13 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=30.2
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.++..|.|.++.++.||.|++||.|+.|+-
T Consensus 60 ~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 60 TIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred EEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 58999999999999999999999999999974
No 162
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=92.49 E-value=0.14 Score=44.83 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=29.7
Q ss_pred cceeccccceeeeee-ecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVN-CKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~-~~~G~~v~~g~~~~v~e 244 (246)
..+.++..|.|.++. ++.||.|++||.|+.|+
T Consensus 124 ~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~ 156 (409)
T PRK09783 124 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 156 (409)
T ss_pred EEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence 358999999999998 99999999999999986
No 163
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.22 E-value=0.16 Score=44.61 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=29.8
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
-.+.++..|.|.++.++.||.|++||.|+.|.
T Consensus 88 v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld 119 (415)
T PRK11556 88 VTVRSRVDGQLMALHFQEGQQVKAGDLLAEID 119 (415)
T ss_pred EEEEccccEEEEEEECCCCCEecCCCEEEEEC
Confidence 45899999999999999999999999999985
No 164
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.96 E-value=0.22 Score=37.21 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=29.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+.+|..|.+.++.++.||.|..||.|+.|
T Consensus 122 ~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 122 NEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 4699999999999999999999999999986
No 165
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=91.73 E-value=0.23 Score=40.20 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.++..|.|.++.++.||.|..||.|++||
T Consensus 242 ieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 242 NEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 46899999999999999999999999999997
No 166
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=91.06 E-value=0.21 Score=44.09 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=20.6
Q ss_pred ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 219 MPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 219 ~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
-+|.+.+..++.||.|++||+|+++|
T Consensus 104 ~eG~I~~w~v~~GD~V~~Gq~L~~VE 129 (463)
T PLN02226 104 TDGTLATFLKKPGERVQADEAIAQIE 129 (463)
T ss_pred ceEEEEEEEeCCCCEecCCCEEEEEE
Confidence 35777888888888888888888887
No 167
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=90.69 E-value=0.27 Score=34.99 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=29.4
Q ss_pred HhCCCEEccc-cccCCCCHHHHHHHHHcCCeEeCC
Q psy10619 43 QTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGP 76 (246)
Q Consensus 43 ~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~g~ 76 (246)
...+|+++|. +|..+|+..++.+|+.+++|++|+
T Consensus 83 ~~~~DvvFp~lHG~~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 83 KLEVDVVFPVLHGPNGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp CTTCSEEEEECCSTTTSSSHHHHHHHHTT-EBSSS
T ss_pred cccCCEEEEeccCCCCcccHHHHHHHHcCCCCcCC
Confidence 5679999988 688899999999999999999875
No 168
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=90.55 E-value=0.25 Score=43.16 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.2
Q ss_pred ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 219 MPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 219 ~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..|.|.+..++.||.|++||.|++||
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vE 82 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIE 82 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEE
Confidence 35889999999999999999999998
No 169
>KOG0559|consensus
Probab=90.45 E-value=0.26 Score=41.48 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=31.3
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEccC
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT 246 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~~ 246 (246)
-.+-+|..|++.+++|+.||.|+.||.|.+|+++
T Consensus 116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 4588999999999999999999999999999873
No 170
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=1.3 Score=38.64 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=75.9
Q ss_pred HhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE--eCCHHHHHHHHHHHHHHHHhhcCCCceEEEec
Q psy10619 96 EAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI--ANNDQEAIEGFKLSSQEAAASFGDDRILVEKF 173 (246)
Q Consensus 96 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~--v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~ 173 (246)
+.-+|.++++ .+...+++...+..+. -+||||+.++|+-|+.+ .-+.+|+.+..+++.+. ...++.|+.
T Consensus 341 ~~lL~nv~T~--~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~------p~~~IaQ~~ 411 (488)
T COG2308 341 EPLLPNVPTY--WCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKAD------PENYIAQPV 411 (488)
T ss_pred ccccCCCCee--ecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhC------hhhhccccc
Confidence 4567888865 6788888877776664 58999999998888766 35677777777666542 356888888
Q ss_pred ccCcceEEEEeeecceeecchhhhhhhhcCCCCCCCCcccceeccccceeeeeeecCCCeeeCCC
Q psy10619 174 IKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQ 238 (246)
Q Consensus 174 i~~g~e~~v~v~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~l~sp~pg~i~~l~~~~G~~v~~g~ 238 (246)
+... ++=++.++.. ... ..+. .+-.-....-...|||-+..+..+.|..|---+
T Consensus 412 ~~lS---T~Pt~v~~~l-~pr-~vdl------R~f~~~~~~~~~v~pGGLtRVal~~gs~vvn~s 465 (488)
T COG2308 412 LQLS---TVPTFVDGGL-APR-HVDL------RPFALADRDGVQVMPGGLTRVALREGSLVVNSS 465 (488)
T ss_pred cccc---ccceEECCee-ccc-cccc------eeEEEEcCCceEEcccceeeeeecCCceeEEcc
Confidence 7632 3334444432 111 1111 000000111267889999888888887665433
No 171
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=89.67 E-value=0.48 Score=30.35 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.4
Q ss_pred cceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.|.+.+..++.|+.|++||+++.+|.
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~ 38 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEA 38 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 57788899999999999999999984
No 172
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=89.56 E-value=0.43 Score=42.24 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=30.8
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.||..|++.++.++.||.|..||.|++||-
T Consensus 135 ~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 135 IDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 469999999999999999999999999999973
No 173
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=89.29 E-value=0.47 Score=38.39 Aligned_cols=33 Identities=30% Similarity=0.670 Sum_probs=29.8
Q ss_pred cccceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 211 ~~~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.+.-++||..|++.. .++.||.|+|||.|..|+
T Consensus 163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 346799999999998 999999999999999875
No 174
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=88.92 E-value=0.49 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|+|.++.++.|+.|..||.|+.++
T Consensus 46 ~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~ 77 (371)
T PRK14875 46 NEVEAPAAGTLRRQVAQEGETLPVGALLAVVA 77 (371)
T ss_pred EEEecCCCeEEEEEEcCCCCEeCCCCEEEEEe
Confidence 45999999999999999999999999999986
No 175
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=88.29 E-value=0.6 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=30.8
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.||..|.+.++.++.||.|..||.|++||-
T Consensus 88 ~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 88 VDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred EEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence 569999999999999999999999999999973
No 176
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.07 E-value=0.65 Score=42.62 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=31.6
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEccC
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT 246 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~~ 246 (246)
..+.||..|+|.++.++.|+.|..||.|+.||-+
T Consensus 563 ~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~~ 596 (596)
T PRK14042 563 TEIKAPANGVVAEILCQKGDKVTPGQVLIRVEVS 596 (596)
T ss_pred eEEecCCCeEEEEEEeCCcCEECCCCEEEEEeCC
Confidence 5689999999999999999999999999999854
No 177
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=87.86 E-value=0.61 Score=39.48 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
-.++||..|.|..+.+..|+.|..|++|+.|.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 236 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVV 236 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEE
Confidence 46999999999999999999999999999874
No 178
>PRK13380 glycine cleavage system protein H; Provisional
Probab=87.70 E-value=0.57 Score=34.67 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.1
Q ss_pred eeccccceeeeeeec-CCCeeeCCCeEEEEcc
Q psy10619 215 LHAPMPGLVKSVNCK-VGDQIMEGQELCVVGK 245 (246)
Q Consensus 215 l~sp~pg~i~~l~~~-~G~~v~~g~~~~v~e~ 245 (246)
..+.+.|.+..+.+. .|+.|++||++++||-
T Consensus 38 ~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs 69 (144)
T PRK13380 38 YAQTMAGDVVFVRLKELGKKVEKGKPVATLES 69 (144)
T ss_pred HHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEE
Confidence 456678899999987 8999999999999994
No 179
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=87.53 E-value=0.65 Score=40.43 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=29.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
-.++||+.|.|..+.++.|+.|..|++|+.|
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~I 246 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAV 246 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEE
Confidence 3599999999999999999999999999876
No 180
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=87.49 E-value=13 Score=30.50 Aligned_cols=114 Identities=20% Similarity=0.364 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHhCCCEEc--cccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619 29 QSYINVDKIIDAIRQTRADAVH--PGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN 106 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~--~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~ 106 (246)
..|.+.+.+++-+++.++..|. |+.+. -+..+.+.|++.|+.+ .....+-+..++.|+-+.++
T Consensus 92 DP~~~~~~fl~~lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~Gmgy-----------~~EVemi~~A~~~gl~T~~y-- 156 (268)
T PF09370_consen 92 DPFRDMDRFLDELKELGFSGVQNFPTVGL--IDGQFRQNLEETGMGY-----------DREVEMIRKAHEKGLFTTAY-- 156 (268)
T ss_dssp -TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--H-----------HHHHHHHHHHHHTT-EE--E--
T ss_pred CCCCcHHHHHHHHHHhCCceEEECCccee--eccHHHHHHHhcCCCH-----------HHHHHHHHHHHHCCCeeeee--
Confidence 4478899999999999999996 44444 3468899999998854 22455777789999999884
Q ss_pred cccCCHHHHHHHHHHhCCcEEEEec--cCCCCceeEEeCCHHHHHHHHHHHHHHHH
Q psy10619 107 GIIRDADHCVEIARDIGYPVMIKAS--AGGGGKGMRIANNDQEAIEGFKLSSQEAA 160 (246)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~P~vvKp~--~g~g~~gv~~v~~~~el~~~~~~~~~~~~ 160 (246)
+.+.+++...+ +.|--+++=-. ..+|+.|.....+.++..+..+++.....
T Consensus 157 --vf~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~ 209 (268)
T PF09370_consen 157 --VFNEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAAR 209 (268)
T ss_dssp --E-SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHH
T ss_pred --ecCHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHH
Confidence 56888887765 45544443222 23366677777788888888887776544
No 181
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=87.47 E-value=0.58 Score=39.98 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.7
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
-.++||..|+|..+.++.|+.|..|++|+.|-
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~ 240 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLI 240 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEe
Confidence 46999999999999999999999999999873
No 182
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=87.26 E-value=0.7 Score=42.47 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=30.4
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..++||..|+|.++.++.|+.|..||.|++||
T Consensus 560 ~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 560 NEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred eEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 46999999999999999999999999999997
No 183
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=86.47 E-value=0.97 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.0
Q ss_pred ccccceeeeeeecC-CCeeeCCCeEEEEcc
Q psy10619 217 APMPGLVKSVNCKV-GDQIMEGQELCVVGK 245 (246)
Q Consensus 217 sp~pg~i~~l~~~~-G~~v~~g~~~~v~e~ 245 (246)
..+.|.+..+.+.. |+.|++||.+++||-
T Consensus 25 ~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs 54 (96)
T cd06848 25 QDLLGDIVFVELPEVGTEVKKGDPFGSVES 54 (96)
T ss_pred HhhCCCEEEEEecCCCCEEeCCCEEEEEEE
Confidence 34567888877776 999999999999983
No 184
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.45 E-value=0.83 Score=41.99 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=29.3
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+.||..|+|.++.++.||.|..||.|++|
T Consensus 562 ~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 562 TEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred EEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 5699999999999999999999999999986
No 185
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=85.73 E-value=0.93 Score=36.89 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=27.7
Q ss_pred eeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++||..|.+..+.+..|+.|..|++|+.|
T Consensus 91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i 119 (265)
T TIGR00999 91 VRSPFDGYITQKSVTLGDYVAPQAELFRV 119 (265)
T ss_pred EECCCCeEEEEEEcCCCCEeCCCCceEEE
Confidence 79999999999999999999999999876
No 186
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=85.68 E-value=0.9 Score=38.04 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=29.5
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
-.++||+.|.+..+.++.|+.|.+|++|+.|-
T Consensus 135 ~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 135 TEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred CEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 35999999999999999999999999999874
No 187
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=85.59 E-value=0.95 Score=38.10 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=28.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
-.++||..|.|..+.++.|+.|..|++++.|
T Consensus 155 ~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~I 185 (310)
T PRK10559 155 TVIRAPADGWVTNLNVYTGEFITRGSTAVAL 185 (310)
T ss_pred CEEECCCCeEEEeEecCCCCEecCCCeeEEE
Confidence 4699999999999999999999999999875
No 188
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=85.48 E-value=1.5 Score=37.20 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHH-------HHHHH-HHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEecc
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLE-------SKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~-------~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~ 132 (246)
.+.+...+-++.+..+. ...+..||.. .+.+| ++.-++.++++ .+.+.++.....+.+. -+|+||+.
T Consensus 222 GL~~A~r~G~V~iaNa~--G~gv~edkal~~~lp~~~r~~LgeellL~~VpT~--~cg~~~~~~~Vl~~l~-~lvvKp~~ 296 (330)
T PF04174_consen 222 GLLEAYRAGNVVIANAP--GSGVAEDKALYAFLPRMIRYYLGEELLLPNVPTW--WCGDPEDREYVLANLD-ELVVKPAD 296 (330)
T ss_dssp THHHHHHTTS-EEES-T--TTHHHHSTTTGGGHHHHHHHHH-S--SSEE---E--ETTSHHHHHHHHHSGG-GEEEEE--
T ss_pred HHHHHHHhCCEEEECCC--ccchhcchhHHHHhHHHHHHHcCCCcccCCCCcE--eCCCHHHHHHHHhchh-hcEEEecC
Confidence 45666666777766322 2233445542 23333 24456666654 5788888877777665 69999999
Q ss_pred CCCCceeEEeC--CHHHHHHHHHHHHH
Q psy10619 133 GGGGKGMRIAN--NDQEAIEGFKLSSQ 157 (246)
Q Consensus 133 g~g~~gv~~v~--~~~el~~~~~~~~~ 157 (246)
+.||.|+.+-. +. |.++.++++.+
T Consensus 297 g~gg~~~~~G~~~s~-e~~~~~~~I~~ 322 (330)
T PF04174_consen 297 GYGGKGVYIGPKLSA-ERRALRAEILA 322 (330)
T ss_dssp ------EEEGGG--H-HHHHHHHHHHH
T ss_pred CCCCCcceeCCcCCH-HHHHHHHHHHh
Confidence 99999998853 33 66677776654
No 189
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=85.30 E-value=0.81 Score=38.81 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
-.++||..|.+..+.++.|+.|..|++|+.|
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I 234 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTL 234 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEE
Confidence 4699999999999999999999999999976
No 190
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=84.85 E-value=3.5 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~ 121 (246)
+...++.+|.++||+.|+.. .+.+++.+.+++
T Consensus 5 s~~~L~~wL~~~gi~~~~~~----~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA----KTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC----CCHHHHHHHHHH
Confidence 34668999999999999842 577888776653
No 191
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=83.93 E-value=1.3 Score=38.71 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.7
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.+|..|.+.++.++.|+.|..|+.|+.||-
T Consensus 46 ~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~ 78 (407)
T PRK05704 46 LEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDE 78 (407)
T ss_pred eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 468999999999999999999999999999973
No 192
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=83.80 E-value=1.1 Score=38.33 Aligned_cols=30 Identities=27% Similarity=0.620 Sum_probs=28.3
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
.+++|+.|.+..+.+++|+.|..|.+|+.+
T Consensus 210 ~IrAP~dG~V~~~~v~~G~~V~~G~~l~al 239 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVGQYVSAGTPLMAL 239 (352)
T ss_pred EEECCCCceEEeecccCCCeecCCCceEEE
Confidence 599999999999999999999999999865
No 193
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=83.79 E-value=5.5 Score=34.11 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=35.6
Q ss_pred EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHH---hhcCCCceEEEeccc
Q psy10619 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAA---ASFGDDRILVEKFIK 175 (246)
Q Consensus 126 ~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~---~~~~~~~~lve~~i~ 175 (246)
++||...|.-|.||..+++.+|+...=++-+..-. ....-+++||||=+.
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 79999999999999999999998775444332211 111125789998775
No 194
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=83.78 E-value=1.3 Score=37.39 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=29.2
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.++..|.+.++.++.||.|++||.|..|+-
T Consensus 68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 46777899999999999999999999999875
No 195
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=82.98 E-value=1.5 Score=38.49 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=29.3
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.++||..|.|.+.+++.|+.|+.|++|+.|-
T Consensus 211 ~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 211 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred EEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 5999999999999999999999999999873
No 196
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=82.52 E-value=1.7 Score=38.07 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|++.++.++.|+.|..|+.++.||
T Consensus 44 ~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 44 LEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 45899999999999999999999999999997
No 197
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=81.69 E-value=2.1 Score=26.42 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=27.1
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
.+.+|..|.+.......|+.+..|++|+.|
T Consensus 45 ~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 45 EVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 578899999999999999999999999864
No 198
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=81.53 E-value=1.8 Score=40.21 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=30.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.||..|++.++.++.||.|+.||.|+.||.
T Consensus 44 ~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~ 76 (633)
T PRK11854 44 MEVPSPQAGVVKEIKVKVGDKVETGALIMIFES 76 (633)
T ss_pred EEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEec
Confidence 459999999999999999999999999999974
No 199
>KOG2156|consensus
Probab=80.56 E-value=3.6 Score=36.76 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHh-CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 98 GVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 98 gip~p~~~~~~~~~~~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
.++..|..+..-.+.+++....++. .--+||||....-|.|+++++...++.. ...++||+||+
T Consensus 279 ef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yie 343 (662)
T KOG2156|consen 279 EFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIE 343 (662)
T ss_pred ccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhh
Confidence 3444333344667888888776652 2238899999999999999988776511 34567777775
No 200
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=79.25 E-value=2.4 Score=36.36 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=29.0
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+-+-..|.|.+|.++..+.|++||.|..|..
T Consensus 55 ~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 55 PIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 46677889999999999999999999999975
No 201
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=79.17 E-value=2.5 Score=29.73 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred cceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619 220 PGLVKSVNC-KVGDQIMEGQELCVVGK 245 (246)
Q Consensus 220 pg~i~~l~~-~~G~~v~~g~~~~v~e~ 245 (246)
.|-+..+.+ +.|+.|++||++++||-
T Consensus 29 lG~i~~v~lp~~G~~V~~g~~i~~IEs 55 (110)
T TIGR03077 29 LGNILHIDLPSVGSSCKEGEVLVILES 55 (110)
T ss_pred cCCEEEEECCCCCCEEcCCCEEEEEEe
Confidence 355555555 66999999999999994
No 202
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=78.69 E-value=4 Score=35.04 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHh---hcCCC
Q psy10619 90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA---SFGDD 166 (246)
Q Consensus 90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~---~~~~~ 166 (246)
.++-.+++||..-|+ ++||...|.-|.||..++|.+|+...=++.+..-.. ...-+
T Consensus 248 ir~KY~eygI~e~Pf---------------------V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~ 306 (404)
T PF08886_consen 248 IRKKYKEYGIKEKPF---------------------VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVS 306 (404)
T ss_dssp HHHHHHHHT--S------------------------EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---
T ss_pred HHHHHHHcCCCCCce---------------------EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccc
Confidence 344566777776662 699999999999999999999985544333322111 11125
Q ss_pred ceEEEeccc
Q psy10619 167 RILVEKFIK 175 (246)
Q Consensus 167 ~~lve~~i~ 175 (246)
++||||=+.
T Consensus 307 ~VIIQEGV~ 315 (404)
T PF08886_consen 307 EVIIQEGVY 315 (404)
T ss_dssp EEEEEE---
T ss_pred eeEEecCcc
Confidence 789998776
No 203
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=78.68 E-value=2.3 Score=37.39 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=29.6
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
-.++||..|+|..+.+..|+.|..|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 35999999999999999999999999999883
No 204
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=78.58 E-value=2.4 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=30.5
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
-.+.||..|++.++.++.||.|.-|+.|++|+-
T Consensus 46 ~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~ 78 (404)
T COG0508 46 MEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78 (404)
T ss_pred EEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence 458899999999999999999999999999974
No 205
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=78.49 E-value=1.8 Score=35.18 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=25.5
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCV 242 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v 242 (246)
..+-...+|+.-++.|+.||.|++||+|..
T Consensus 30 al~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 30 ALLPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred EEcCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 445567788999999999999999999864
No 206
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=78.43 E-value=2.6 Score=35.06 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=27.0
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+++|..|++.. .++.||.|++||.|..|
T Consensus 220 ~~v~A~~~G~~~~-~~~~Gd~V~~G~~ig~i 249 (287)
T cd06251 220 VWVRAPQGGLLRS-LVKLGDKVKKGQLLATI 249 (287)
T ss_pred eEEecCCCeEEEE-ecCCCCEECCCCEEEEE
Confidence 3689999999886 89999999999999887
No 207
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=78.24 E-value=3.5 Score=25.37 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=26.2
Q ss_pred eccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 216 HAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 216 ~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.++-.|.+.+..+..|+.+..||+++.+|.
T Consensus 10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred CCCcEEEEEEEEECCCCEEcCCCEEEEEEe
Confidence 356678999999999999999999999874
No 208
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.13 E-value=2.6 Score=36.82 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=28.2
Q ss_pred cceeccccceeeeeee-cCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNC-KVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~-~~G~~v~~g~~~~v~ 243 (246)
-.++||..|.|..+.+ ..|+.|..|++|+.|
T Consensus 272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i 303 (423)
T TIGR01843 272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEI 303 (423)
T ss_pred cEEECCCCcEEEEEEEEccCceecCCCeeEEE
Confidence 4699999999999886 699999999999987
No 209
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=77.96 E-value=2.6 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=30.0
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|++.++.++.||.|..|+.|++||
T Consensus 179 ~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 179 TEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 45889999999999999999999999999996
No 210
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=77.74 E-value=0.11 Score=43.78 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=62.7
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeC----CHHHHHHHHHHHHH
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN----NDQEAIEGFKLSSQ 157 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~----~~~el~~~~~~~~~ 157 (246)
.++.+|..++..+.+.++..|... ........+..+++-+|+|++.||..++.+.+..... +.+.+..+....+.
T Consensus 47 ~~~~~~~~~~~~~~~~~vvfp~lh-G~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~ 125 (317)
T COG1181 47 LWMLDKEVTKRVLQKADVVFPVLH-GPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALT 125 (317)
T ss_pred eEEeccccchhhcccCCEEEEeCC-CCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeee
Confidence 345566666688888888877643 2344555677788889999999999998877763321 11112221111110
Q ss_pred HHHhhcCCCceEEEecccCcceEEEEeeeccee
Q psy10619 158 EAAASFGDDRILVEKFIKNPRHIEIQGTTYKFL 190 (246)
Q Consensus 158 ~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~~~ 190 (246)
. ....++++|++.. +..|.+-|..+..+
T Consensus 126 ~----~~~~~~~~e~~~~-~l~~p~~Vkp~~~g 153 (317)
T COG1181 126 R----DEYSSVIVEEVEE-GLGFPLFVKPAREG 153 (317)
T ss_pred c----ccchhHHHHHhhc-ccCCCEEEEcCCcc
Confidence 0 0003567778887 77777777766544
No 211
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=76.85 E-value=2.9 Score=34.97 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=26.5
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..++||..|+.... ++.||.|++||.|..|
T Consensus 230 ~~v~A~~~Gl~~~~-~~~G~~V~~Gq~lg~i 259 (298)
T cd06253 230 VYVNAETSGIFVPA-KHLGDIVKRGDVIGEI 259 (298)
T ss_pred EEEEcCCCeEEEEC-cCCCCEECCCCEEEEE
Confidence 56999999988876 7999999999999875
No 212
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=76.50 E-value=2.5 Score=38.98 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.3
Q ss_pred ccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 219 MPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 219 ~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..|.+.+..++.||.|++||.||.+|-
T Consensus 148 ~eg~i~~w~v~~Gd~V~~g~~l~~vEt 174 (590)
T TIGR02927 148 TEGTITQWLKAVGDKIEVDEPILEVST 174 (590)
T ss_pred ceEEEEEEEeCCCCEecCCCEeEEEEe
Confidence 357889999999999999999999984
No 213
>PRK12784 hypothetical protein; Provisional
Probab=76.19 E-value=3.8 Score=26.55 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=27.3
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
.+.--..|-++.+++.+||.|..+-.|+.+|
T Consensus 45 ~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 45 KVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred EEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 3556678999999999999999999999887
No 214
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=74.97 E-value=3.8 Score=29.32 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=22.9
Q ss_pred eccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 216 HAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 216 ~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
...+.|..-+..++.||.|++||+|+..-
T Consensus 74 TV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 74 TVKLNGEGFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred eeecCCCceEEEecCCCEEcCCCEEEEEc
Confidence 34455666788899999999999998753
No 215
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=74.79 E-value=3.5 Score=37.65 Aligned_cols=32 Identities=38% Similarity=0.569 Sum_probs=29.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|.+.++.++.|+.|..|+.|++|+
T Consensus 159 ~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 159 MEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 46899999999999999999999999999996
No 216
>PRK00624 glycine cleavage system protein H; Provisional
Probab=74.52 E-value=4.1 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.2
Q ss_pred cceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619 220 PGLVKSVNC-KVGDQIMEGQELCVVGK 245 (246)
Q Consensus 220 pg~i~~l~~-~~G~~v~~g~~~~v~e~ 245 (246)
.|-|..+.+ +.|+.|++||.+++||-
T Consensus 31 lG~i~~v~lp~~G~~V~~g~~i~~IEs 57 (114)
T PRK00624 31 LGNILHIDLPSVGSFCKEGEVLVILES 57 (114)
T ss_pred cCCEEEEECCCCCCEEeCCCEEEEEEe
Confidence 345555555 56999999999999994
No 217
>KOG2158|consensus
Probab=74.45 E-value=2.8 Score=36.84 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHH
Q psy10619 108 IIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIE 150 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~ 150 (246)
.-....+..+......-+.++||..|..|.|++++++..+..+
T Consensus 211 lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~g~ 253 (565)
T KOG2158|consen 211 LPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREKGE 253 (565)
T ss_pred CchHHHHHHHHHHHhcccEEECCCCCCCCcceeeechhhhhhH
Confidence 3445555555556667799999999999999999866555433
No 218
>KOG1057|consensus
Probab=73.75 E-value=17 Score=34.29 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=49.1
Q ss_pred HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCC---HHHHHHHHH----------HhCCcEEEEe
Q psy10619 64 SRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRD---ADHCVEIAR----------DIGYPVMIKA 130 (246)
Q Consensus 64 ~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---~~~~~~~~~----------~~~~P~vvKp 130 (246)
..-.++.-|++-++...-.+..|+....+.|+..||++|++. .++. -.++.+..+ .+.-|+|=||
T Consensus 108 iaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya--~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKP 185 (1018)
T KOG1057|consen 108 VAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYA--ILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKP 185 (1018)
T ss_pred HHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeE--eecCCCCChHHhhhhcCCCeEEEcceeccCCcccCC
Confidence 344566678888998888999999999999999999999853 3322 122333332 2345899999
Q ss_pred ccCC
Q psy10619 131 SAGG 134 (246)
Q Consensus 131 ~~g~ 134 (246)
+++-
T Consensus 186 Vs~E 189 (1018)
T KOG1057|consen 186 VSAE 189 (1018)
T ss_pred CCcc
Confidence 9865
No 219
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=73.46 E-value=4 Score=38.03 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=24.4
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|.+.++.++.|+.|..|+.|+.|+
T Consensus 248 ~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 248 MEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred eEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 45777777888888888888888888777775
No 220
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=71.74 E-value=4.8 Score=34.15 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=26.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
.-++||..|+.. ..++.||.|++||.|..|
T Consensus 256 ~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I 285 (325)
T TIGR02994 256 CFIFAEDDGLIE-FMIDLGDPVSKGDVIARV 285 (325)
T ss_pred eEEEcCCCeEEE-EecCCCCEeCCCCEEEEE
Confidence 458999999888 569999999999999875
No 221
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=71.44 E-value=4.7 Score=36.86 Aligned_cols=32 Identities=34% Similarity=0.627 Sum_probs=30.1
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|++.++.++.|+.|..|+.|+.|+
T Consensus 162 ~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 162 MEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred EEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 45899999999999999999999999999986
No 222
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=71.44 E-value=5 Score=36.69 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=30.4
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.++..|.+.++.++.||.|..||.|++|+.
T Consensus 43 ~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 43 MEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred eEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 358999999999999999999999999999974
No 223
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=70.84 E-value=4.5 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=20.0
Q ss_pred ccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619 219 MPGLVKSVNC-KVGDQIMEGQELCVVGK 245 (246)
Q Consensus 219 ~pg~i~~l~~-~~G~~v~~g~~~~v~e~ 245 (246)
..|-+..+.+ +.|+.|++||++++||-
T Consensus 34 ~lG~i~~v~lp~~G~~v~~g~~~~~IEs 61 (127)
T TIGR00527 34 ELGDIVFVELPEVGAEVSAGESCGSVES 61 (127)
T ss_pred CCCCCceeecCCCCCEecCCCEEEEEEE
Confidence 3455554543 47999999999999984
No 224
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=70.59 E-value=5.4 Score=33.27 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=25.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..++||..|+..- .++.|+.|++||.|..|
T Consensus 232 ~~v~Ap~~Gi~~~-~~~~G~~V~~Gq~lg~I 261 (293)
T cd06255 232 DWVAAIHGGLFEP-SVPAGDTIPAGQPLGRV 261 (293)
T ss_pred EEEecCCCeEEEE-ecCCCCEecCCCEEEEE
Confidence 5689999888874 47999999999999876
No 225
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=70.52 E-value=5.3 Score=26.92 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=16.4
Q ss_pred eeeeeecCCCeeeCCCeEEEEc
Q psy10619 223 VKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 223 i~~l~~~~G~~v~~g~~~~v~e 244 (246)
+..+.++.||.|++||+|..+-
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEB
T ss_pred cccccceecccccCCCEEEecC
Confidence 4556699999999999998765
No 226
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=70.38 E-value=5.7 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=29.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.++..|.+.++.++.|+.|..|+.|+.||
T Consensus 42 ~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 42 IEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 45889999999999999999999999999986
No 227
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=70.29 E-value=5.7 Score=28.58 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=22.0
Q ss_pred ccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 217 sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+.|..-+..++.||.|++||+|+..
T Consensus 75 v~l~g~gF~~~vk~Gd~V~~G~~l~~~ 101 (124)
T cd00210 75 VKLNGEGFTSHVEEGQRVKQGDKLLEF 101 (124)
T ss_pred eecCCCceEEEecCCCEEcCCCEEEEE
Confidence 445566778889999999999999865
No 228
>PRK01202 glycine cleavage system protein H; Provisional
Probab=70.28 E-value=5.1 Score=28.94 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=20.5
Q ss_pred ccceeeeeee-cCCCeeeCCCeEEEEcc
Q psy10619 219 MPGLVKSVNC-KVGDQIMEGQELCVVGK 245 (246)
Q Consensus 219 ~pg~i~~l~~-~~G~~v~~g~~~~v~e~ 245 (246)
..|.+..+.+ +.|+.|++||++++||-
T Consensus 35 ~lG~i~~v~lp~~G~~v~~g~~~~~IEs 62 (127)
T PRK01202 35 QLGDIVFVELPEVGDEVKAGETFGVVES 62 (127)
T ss_pred hcCCeeEEEcCCCCCEecCCCEEEEEEE
Confidence 4555655554 46999999999999984
No 229
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=70.23 E-value=5.7 Score=35.21 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred cceeccccceeeeeeecCCCe-eeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQ-IMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~-v~~g~~~~v~e 244 (246)
..+.+|..|.+.++.++.|+. |..|+.+++||
T Consensus 43 ~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 43 MEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred eEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 468999999999999999999 99999999995
No 230
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=70.22 E-value=5.5 Score=33.61 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=26.0
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..++||..|+.. ..++.|+.|++||.|..|
T Consensus 245 ~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i 274 (316)
T cd06252 245 CYVFAPHPGLFE-PLVDLGDEVSAGQVAGRI 274 (316)
T ss_pred EEEEcCCCeEEE-EecCCCCEEcCCCEEEEE
Confidence 568999999887 458899999999999876
No 231
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=69.79 E-value=5.8 Score=33.00 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=26.0
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..++||..|+..-. ++.||.|++||.|..|
T Consensus 224 ~~v~Ap~~G~~~~~-~~~G~~V~~G~~lg~i 253 (288)
T cd06254 224 YYVTSPASGLWYPF-VKAGDTVQKGALLGYV 253 (288)
T ss_pred EEEecCCCeEEEEe-cCCCCEecCCCEEEEE
Confidence 56899999988855 6899999999999876
No 232
>TIGR03586 PseI pseudaminic acid synthase.
Probab=69.61 E-value=53 Score=27.95 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~ 140 (246)
.+.+.+++.|+.++....+ .. .-+++.++|++.-+--+..+++.. +.+.+.+.|-|+++|- |+
T Consensus 81 ~L~~~~~~~Gi~~~stpfd-------~~-svd~l~~~~v~~~KI~S~~~~n~~-LL~~va~~gkPvilst-------G~- 143 (327)
T TIGR03586 81 ELFERAKELGLTIFSSPFD-------ET-AVDFLESLDVPAYKIASFEITDLP-LIRYVAKTGKPIIMST-------GI- 143 (327)
T ss_pred HHHHHHHHhCCcEEEccCC-------HH-HHHHHHHcCCCEEEECCccccCHH-HHHHHHhcCCcEEEEC-------CC-
Confidence 3555677788887744432 22 225677777765442122344444 4445566788888863 33
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 141 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
.+.+|+..+++.+.. .++.++.+...+.
T Consensus 144 --~t~~Ei~~Av~~i~~-----~g~~~i~LlhC~s 171 (327)
T TIGR03586 144 --ATLEEIQEAVEACRE-----AGCKDLVLLKCTS 171 (327)
T ss_pred --CCHHHHHHHHHHHHH-----CCCCcEEEEecCC
Confidence 367888888887753 2344555544444
No 233
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=69.18 E-value=5.9 Score=34.12 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..++||..|++... ++.||.|++||.|..|
T Consensus 290 ~~v~Ap~~Gl~~~~-~~~Gd~V~~G~~lg~I 319 (359)
T cd06250 290 EMLYAPAGGMVVYR-AAPGDWVEAGDVLAEI 319 (359)
T ss_pred EEEeCCCCeEEEEe-cCCCCEecCCCEEEEE
Confidence 56899999988854 7999999999999876
No 234
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=69.14 E-value=4.8 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred ceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 221 GLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 221 g~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
|.--+..|+.||.|++||.|..-+
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAE 62 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecC
Confidence 444678899999999999998654
No 235
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=69.04 E-value=5.4 Score=34.59 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCC--eEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQ--ELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~--~~~v~e 244 (246)
..++||+.|.|.+..+..|+.|..|+ +|+.|+
T Consensus 172 ~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 172 ATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred CEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 46999999999999999999999964 787774
No 236
>PRK12784 hypothetical protein; Provisional
Probab=67.58 E-value=7.2 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=29.6
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
.+.||.-|.+.++.++.++-|.+=++|+.||+
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~ 38 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRK 38 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEee
Confidence 47899999999999999999999999999886
No 237
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=67.23 E-value=4 Score=34.17 Aligned_cols=29 Identities=31% Similarity=0.638 Sum_probs=23.8
Q ss_pred eeccccceee-------------------------eeeecCCCeeeCCCeEEEE
Q psy10619 215 LHAPMPGLVK-------------------------SVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 215 l~sp~pg~i~-------------------------~l~~~~G~~v~~g~~~~v~ 243 (246)
++||..|++. ...++.|+.|..|++|+.|
T Consensus 137 i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i 190 (328)
T PF12700_consen 137 IKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTI 190 (328)
T ss_dssp EE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEE
T ss_pred cccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeee
Confidence 9999999999 9999999999999999876
No 238
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=66.92 E-value=8.3 Score=27.94 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=36.9
Q ss_pred CcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 124 ~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
.|++|||....-.---.+..+.+++...- ....+..+++.+.++...|+++-++...
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~~g~ 58 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIVDGE 58 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEECCE
Confidence 58999999954332222445555543111 1123567999999998999999887654
No 239
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=66.75 E-value=6.9 Score=35.79 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=30.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e~ 245 (246)
..+.++..|.|.++.++.|+.|..|+.++.||.
T Consensus 45 ~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~ 77 (547)
T PRK11855 45 MEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA 77 (547)
T ss_pred EEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence 358899999999999999999999999999973
No 240
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=66.27 E-value=17 Score=31.74 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....++.+.|+.|++|++|..|
T Consensus 375 ~~aGi~l~kk~ge~Vk~Gd~l~ti 398 (435)
T COG0213 375 KGAGIYLHKKLGEKVKKGDPLATI 398 (435)
T ss_pred cccceEEEecCCCeeccCCeEEEE
Confidence 456678999999999999999987
No 241
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=66.12 E-value=5.6 Score=35.62 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.8
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+.++.||.|++||+|+.|
T Consensus 445 ~~aGi~l~~k~Gd~V~~Gd~l~~i 468 (493)
T TIGR02645 445 KGAGVELHVKVGDQVKKGDPLYTI 468 (493)
T ss_pred cCcCeEEeccCCCEecCCCeEEEE
Confidence 355678899999999999999886
No 242
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=65.89 E-value=6.9 Score=34.14 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=27.3
Q ss_pred cceeccccceeeeeeecCCCeeeCCCe--EEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQE--LCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~--~~v~ 243 (246)
-.++||..|+|.+..++.|+.|..|++ |+.|
T Consensus 174 t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 174 TKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred CEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 359999999999999999999999996 5554
No 243
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=65.87 E-value=7.7 Score=34.06 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=29.8
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.+|..|.+.++.++.|+.|..|+.++.|+
T Consensus 46 ~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 46 VEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred EEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 35889999999999999999999999999986
No 244
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=65.85 E-value=5.4 Score=35.26 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=20.8
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 379 ~~aGi~l~~k~G~~V~~Gd~l~~i 402 (440)
T PRK05820 379 YSVGLTLHARLGDRVDAGEPLATL 402 (440)
T ss_pred cCCCeEEccCCcCEECCCCeEEEE
Confidence 355678999999999999999986
No 245
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=65.77 E-value=5.2 Score=29.14 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=19.8
Q ss_pred cccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 218 PMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 218 p~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
-+.|..-...++.||.|++||+|+..
T Consensus 80 ~L~G~gF~~~v~~G~~V~~G~~L~~~ 105 (132)
T PF00358_consen 80 KLNGEGFETLVKEGDKVKAGQPLIEF 105 (132)
T ss_dssp GGTTTTEEESS-TTSEE-TTEEEEEE
T ss_pred hcCCcceEEEEeCCCEEECCCEEEEE
Confidence 34566778889999999999999875
No 246
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=65.46 E-value=5.5 Score=35.14 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 378 ~~aGi~l~~k~Gd~V~~Gd~l~~i 401 (437)
T TIGR02643 378 YSVGLTDLLPLGDRVEKGEPLAVV 401 (437)
T ss_pred cccCeEeccCCcCEeCCCCeEEEE
Confidence 355678899999999999999886
No 247
>PRK04350 thymidine phosphorylase; Provisional
Probab=65.08 E-value=6 Score=35.43 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.7
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 437 ~~aGi~l~~k~Gd~V~~G~~l~~i 460 (490)
T PRK04350 437 KGAGIDLHVKVGDKVKKGDPLYTI 460 (490)
T ss_pred cccCeEEeccCCCEecCCCeEEEE
Confidence 355578899999999999999886
No 248
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=64.72 E-value=14 Score=24.94 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=42.1
Q ss_pred CcCCCCC--CChhhhccceeEEcCCCCcC----C----C-C----CCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHH
Q psy10619 2 LFPDPCV--FQRHVKLADEAVCIGPPVAA----Q----S-Y----INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRL 66 (246)
Q Consensus 2 v~~d~~~--~~~~~~~ad~~~~~~~~~~~----~----~-~----~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~ 66 (246)
|.++.+. -+.|+-.|..+.+..-.... . . . .....+.+++...++|+++.+. .++ .....|
T Consensus 5 v~~~~~~~~v~~hFg~a~~f~i~d~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~~~v~~vi~~~--iG~--~~~~~l 80 (103)
T cd00851 5 IPVSGNGGKVSPHFGRAPYFLIYDVETGKIKNVEVIENPAAHATGGAGGKAAEFLADEGVDVVIVGG--IGP--RALNKL 80 (103)
T ss_pred EEecCCCccccCccccCCEEEEEEccCCcEeEEEEecCCCccccCCCchHHHHHHHHcCCCEEEeCC--CCc--CHHHHH
Confidence 4555555 67788788887765532221 0 0 0 1235677777788888888652 222 245677
Q ss_pred HHcCCeEeC
Q psy10619 67 KEEGVVFIG 75 (246)
Q Consensus 67 ~~~g~~~~g 75 (246)
.+.|+.++.
T Consensus 81 ~~~gI~v~~ 89 (103)
T cd00851 81 RNAGIKVYK 89 (103)
T ss_pred HHCCCEEEE
Confidence 778887763
No 249
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=64.48 E-value=8.6 Score=29.30 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=22.6
Q ss_pred ccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 217 APMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 217 sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
--+.|..-...++.||.|++||+|+..-
T Consensus 97 V~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 97 VELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred cccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 3455667788899999999999998753
No 250
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=64.01 E-value=8.5 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=29.7
Q ss_pred cceeccccceeeeeeecCCC-eeeCCCeEEEEcc
Q psy10619 213 KILHAPMPGLVKSVNCKVGD-QIMEGQELCVVGK 245 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~-~v~~g~~~~v~e~ 245 (246)
..+.+|..|.+.++.++.|+ .|+.|+.+++||-
T Consensus 46 ~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~ 79 (464)
T PRK11892 46 MEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLE 79 (464)
T ss_pred eeecCCCceEEEEEEecCCCcEeCCCCEEEEEcc
Confidence 45889999999999999996 7999999999963
No 251
>KOG0557|consensus
Probab=63.64 E-value=6 Score=34.78 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=23.3
Q ss_pred ceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 221 GLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 221 g~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
|-|.+-..+.||.+++||.||.||
T Consensus 53 GnIvsW~kKeGdkls~GDvl~EVE 76 (470)
T KOG0557|consen 53 GNIVSWKKKEGDKLSAGDVLLEVE 76 (470)
T ss_pred CceeeEeeccCCccCCCceEEEEe
Confidence 889999999999999999999998
No 252
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=62.97 E-value=6.6 Score=35.24 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.0
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 446 ~~aGi~l~~k~Gd~V~~G~pl~~i 469 (500)
T TIGR03327 446 KGAGVYLHVKVGEKVKKGDPLYTI 469 (500)
T ss_pred cccCeEEeccCcCEeCCCCeEEEE
Confidence 356678999999999999999986
No 253
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=62.44 E-value=6.7 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.9
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 374 ~~aGi~l~~k~g~~V~~g~~l~~i 397 (434)
T PRK06078 374 LAVGIVLRKKVGDSVKKGESLATI 397 (434)
T ss_pred cccCeEeccCCcCEeCCCCeEEEE
Confidence 455678999999999999999986
No 254
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=62.02 E-value=7.3 Score=34.10 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
++....+..+.||.|++||+|+.|
T Consensus 372 ~~aGi~l~~k~G~~V~~g~~l~~i 395 (405)
T TIGR02644 372 HEAGIYLHKKTGDRVKKGDPLATL 395 (405)
T ss_pred cCCCeEEecCCcCEeCCCCeEEEE
Confidence 456678999999999999999987
No 255
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=61.60 E-value=10 Score=34.54 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=28.0
Q ss_pred cceeccccceeeeeeecCCC-eeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGD-QIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~-~v~~g~~~~v~e 244 (246)
..+.++..|++.++.++.|+ .|..|+.|++|+
T Consensus 156 ~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 156 VEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred eEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 56888999999999999996 799999998873
No 256
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=60.14 E-value=3 Score=35.43 Aligned_cols=100 Identities=14% Similarity=0.235 Sum_probs=59.0
Q ss_pred HHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEE
Q psy10619 62 FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI 141 (246)
Q Consensus 62 ~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~ 141 (246)
++..++..+..++-|-.. .+..||..+.-+-+.+ |.-|.. +-+..+.... .+.+--.|.||..|.-|.+|.+
T Consensus 243 ~~~~l~~~~~~~lEPaWk--~ilsNK~lLplLW~~f--PnHp~L--L~t~F~~~~~--~~~~~~yv~KPl~gREGaNv~i 314 (387)
T COG0754 243 LAQNLENARTIFLEPAWK--SILSNKALLPLLWERF--PNHPNL--LPTYFEPDDE--EKLGESYVRKPLFGREGANVSI 314 (387)
T ss_pred HHHHhcCCCcEEechhHH--HHhccccHHHHHHHhC--CCCccc--ccccCCCCcc--ccchhhhhccccccccCCCeeE
Confidence 455666777777755444 3478999888877764 222211 1111111111 1223336999999999999999
Q ss_pred eCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619 142 ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176 (246)
Q Consensus 142 v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~ 176 (246)
+.+........ ...+++.+++.|+|.+-
T Consensus 315 ~~~~~~~~~~~-------~G~Yg~eg~IyQe~~~L 342 (387)
T COG0754 315 FEDAGKVLDKA-------DGPYGEEGMIYQEFYPL 342 (387)
T ss_pred EecCCceeecC-------CCCccccchhhhhhccC
Confidence 86643332221 12356788999999853
No 257
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=59.01 E-value=9 Score=32.31 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=26.0
Q ss_pred ceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
.++||..|.|..+.++.|+.|.. ++|+.|
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i 234 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEM 234 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEE
Confidence 59999999999999999999986 777765
No 258
>COG3608 Predicted deacylase [General function prediction only]
Probab=58.63 E-value=11 Score=31.94 Aligned_cols=30 Identities=30% Similarity=0.628 Sum_probs=26.0
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+++|..|+++ -.++.||.|++||.|..+
T Consensus 257 ~~i~Ap~~G~v~-~~v~lGd~VeaG~~la~i 286 (331)
T COG3608 257 EMIRAPAGGLVE-FLVDLGDKVEAGDVLATI 286 (331)
T ss_pred ceeecCCCceEE-EeecCCCcccCCCeEEEE
Confidence 469999999875 568999999999999876
No 259
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=58.02 E-value=6.7 Score=33.42 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.3
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELC 241 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~ 241 (246)
..+..+..||--++.|+.||.|++||+|.
T Consensus 30 allg~ey~gmrp~mkV~~gD~VkkGq~Lf 58 (447)
T COG1726 30 ALLGEEYVGMRPSMKVREGDAVKKGQVLF 58 (447)
T ss_pred EEccccccCCCCcceeccCCeeeccceee
Confidence 45677788888999999999999999985
No 260
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=57.93 E-value=13 Score=24.71 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.5
Q ss_pred ceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 221 GLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 221 g~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
|+-....++-|+.|++||.|+.++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 666788999999999999999886
No 261
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=57.44 E-value=12 Score=27.96 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.6
Q ss_pred eeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 215 l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
-+-.+.|..=+..++.||.|++||+|+..
T Consensus 80 DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~f 108 (156)
T COG2190 80 DTVKLNGEGFESLVKEGDKVKAGDPLLEF 108 (156)
T ss_pred eeEEECCcceEEEeeCCCEEccCCEEEEE
Confidence 34456677788899999999999999864
No 262
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.33 E-value=1.1e+02 Score=25.08 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=72.5
Q ss_pred EEcCCCCcCCCCCCHHHHHHHHHHhCCCEEcccc--------cc--CCCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCH
Q psy10619 20 VCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGY--------GF--LSEN--ASFVSRLKEEGVVFIGPTAECIRGMGDK 87 (246)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~--------~~--~~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK 87 (246)
++.+|.+.+ ++.-.-.+.+.+++.++.++.-+. .| .++. ..+.+.+++.|++++... .|.
T Consensus 18 ~iaGPC~vE-s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev-------~d~ 89 (250)
T PRK13397 18 FIVGPCSIE-SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI-------MSE 89 (250)
T ss_pred EEeccCccC-CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee-------CCH
Confidence 444544433 222233445567778888877441 11 1222 256778889999988332 344
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCc
Q psy10619 88 LESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR 167 (246)
Q Consensus 88 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~ 167 (246)
.....+.+...+-..++. .+.+.+ +..++.+.+-|+++|--.. .+.+|+..+++.+.. .++.+
T Consensus 90 ~~v~~~~e~vdilqIgs~--~~~n~~-LL~~va~tgkPVilk~G~~---------~t~~e~~~A~e~i~~-----~Gn~~ 152 (250)
T PRK13397 90 RQLEEAYDYLDVIQVGAR--NMQNFE-FLKTLSHIDKPILFKRGLM---------ATIEEYLGALSYLQD-----TGKSN 152 (250)
T ss_pred HHHHHHHhcCCEEEECcc--cccCHH-HHHHHHccCCeEEEeCCCC---------CCHHHHHHHHHHHHH-----cCCCe
Confidence 433333332222223322 455544 5556667799999984321 478899988888764 34445
Q ss_pred e-EEEeccc
Q psy10619 168 I-LVEKFIK 175 (246)
Q Consensus 168 ~-lve~~i~ 175 (246)
+ |.|+-+.
T Consensus 153 i~L~eRg~~ 161 (250)
T PRK13397 153 IILCERGVR 161 (250)
T ss_pred EEEEccccC
Confidence 4 4565665
No 263
>PRK05849 hypothetical protein; Provisional
Probab=56.39 E-value=1.2e+02 Score=29.19 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=56.1
Q ss_pred hcCHHHHHHHHHH--hCCCCCCCCcccc----CCHHHHHHHHHHh--CCcEEEEeccCC------CCceeEE----eC--
Q psy10619 84 MGDKLESKKLAKE--AGVNIIPGFNGII----RDADHCVEIARDI--GYPVMIKASAGG------GGKGMRI----AN-- 143 (246)
Q Consensus 84 ~~dK~~~~~~l~~--~gip~p~~~~~~~----~~~~~~~~~~~~~--~~P~vvKp~~g~------g~~gv~~----v~-- 143 (246)
+..|..+-..|+. .|.++|+.+.... .+.+.+.+..... +-|++|+...-+ +..|.+. +.
T Consensus 8 ~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~ 87 (783)
T PRK05849 8 FQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNAD 87 (783)
T ss_pred cchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCC
Confidence 4678888888888 8999999752111 2233333333332 468999977532 2234432 33
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 144 NDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 144 ~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
+.+++..++...++.... .....++||+|+.
T Consensus 88 ~~~~L~~AI~~V~aS~~~-~~~~aVlVQ~MV~ 118 (783)
T PRK05849 88 SKDQLLKAIEKVIASYGT-SKDDEILVQPMLE 118 (783)
T ss_pred cHHHHHHHHHHHHHhhCC-CCCCeEEEEeCcc
Confidence 334899999988865321 2345799999997
No 264
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=56.10 E-value=20 Score=31.28 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHhCCCEEcccc-c--------cCCCCHHHHHHHHHcCCeEe-----CCCHHHHHHhcCHHHHHHHHHHh
Q psy10619 32 INVDKIIDAIRQTRADAVHPGY-G--------FLSENASFVSRLKEEGVVFI-----GPTAECIRGMGDKLESKKLAKEA 97 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~-~--------~~~e~~~~~~~~~~~g~~~~-----g~~~~~~~~~~dK~~~~~~l~~~ 97 (246)
.+++.+++.|..+++.+--... + .......+...+++.|.++- |.+.-..++-+.|....-++--.
T Consensus 19 ~~~ErFlNl~~~~gI~lw~i~~~~~~~~~~~i~~~d~~~lr~i~rkt~~rv~I~~r~GlpF~~~r~~~R~~~~~G~~~f~ 98 (385)
T PF06898_consen 19 ESPERFLNLCARRGIYLWDIKRKDEDGIEAKISLKDFKKLRPIARKTGCRVRILKRYGLPFFLKRLRRRKGFVAGIVLFL 98 (385)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHHCCEEEEEEecChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998876542211 0 01111245555666665432 33333334434444332222211
Q ss_pred CCCCCCCCc--------cccCCHHHHHHHHHHhCC-cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCce
Q psy10619 98 GVNIIPGFN--------GIIRDADHCVEIARDIGY-PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRI 168 (246)
Q Consensus 98 gip~p~~~~--------~~~~~~~~~~~~~~~~~~-P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 168 (246)
-+-..-+.+ ..-.+.+++.+.+++.|. |-+.|. .+++.+++++.+..- + ++=.
T Consensus 99 ~~l~~lS~fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~----------~id~~~~ie~~l~~~-------~-~~i~ 160 (385)
T PF06898_consen 99 ALLYILSSFIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKF----------KIDSCEEIEKKLRKQ-------F-PDIS 160 (385)
T ss_pred HHHHHHcCeEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeec----------CCChHHHHHHHHHhh-------C-CCeE
Confidence 110000000 012356778888887773 322222 134467777766542 2 1223
Q ss_pred EEEecccCcceEEEEeeecceeecchhhhhhhhcCCCCCCCCcccceeccccceeeeee-------ecCCCeeeCCCeEE
Q psy10619 169 LVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVN-------CKVGDQIMEGQELC 241 (246)
Q Consensus 169 lve~~i~~g~e~~v~v~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~l~sp~pg~i~~l~-------~~~G~~v~~g~~~~ 241 (246)
-|--.+. |.-+.+.+.-. ..|+.........+.|-..|+|.++. |+.||.|++||.|+
T Consensus 161 WV~i~~~-GT~l~I~v~E~--------------~~p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLI 225 (385)
T PF06898_consen 161 WVGIEIK-GTRLIIEVVEK--------------VDPEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLI 225 (385)
T ss_pred EEEEEEE-eeEEEEEEEEc--------------CCCCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEE
Confidence 3445555 54445544411 11111112223458888889988775 56679999999987
No 265
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.71 E-value=13 Score=33.20 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.7
Q ss_pred cceeccccceeeeeeecCC-CeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVG-DQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G-~~v~~g~~~~v~ 243 (246)
-.++||..|+|....+..| +.|..|++|+.|
T Consensus 317 ~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~I 348 (457)
T TIGR01000 317 GVIKAPEDGVLHLNPETKGIKYVPKGTLIAQI 348 (457)
T ss_pred CEEECCCCeEEEecccCCCCcEeCCCCEEEEE
Confidence 4699999999998888999 589999999986
No 266
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=55.14 E-value=19 Score=31.29 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHhCC-cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccCcceEEEEeeecc
Q psy10619 110 RDADHCVEIARDIGY-PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYK 188 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~-P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~g~e~~v~v~~d~ 188 (246)
.+.+++.+.+++.|. |-+.|. .+ |.+++++.+..- + ++=.-|--.+. |.-+.+.+.-..
T Consensus 116 ~t~~~i~~~L~e~Gi~~G~~k~----------~i-d~~~ie~~l~~~-------~-~~i~WV~v~i~-GTrl~i~v~Ek~ 175 (382)
T TIGR02876 116 ETPYEIRKQLKEMGIKPGVWKF----------SV-DVYKLERKLLDR-------V-PEIMWAGVRVR-GTTLVIKVVEKQ 175 (382)
T ss_pred CCHHHHHHHHHHcCCCcCeeeC----------CC-CHHHHHHHHHhh-------C-CCcEEEEEEEE-eEEEEEEEEecC
Confidence 356777888887763 222221 13 677777655442 1 12233445555 444444443211
Q ss_pred eeecchhhhhhhhcCCCC-CCCCcccceeccccceeeeee-------ecCCCeeeCCCeEE
Q psy10619 189 FLIQTEKEFEYAKLLPPK-PKLDETKILHAPMPGLVKSVN-------CKVGDQIMEGQELC 241 (246)
Q Consensus 189 ~~v~~~~~~~~~~~~~~~-~~~~~~~~l~sp~pg~i~~l~-------~~~G~~v~~g~~~~ 241 (246)
. +|. ........+.|-..|+|.++. |++||.|++||.|+
T Consensus 176 ~--------------~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 176 E--------------PKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred C--------------CCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 0 122 112223458899999998876 45669999999987
No 267
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=55.13 E-value=48 Score=20.42 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHhCCCEEccc-cccCCCCHHHHHHHHHcCCeEe
Q psy10619 31 YINVDKIIDAIRQTRADAVHPG-YGFLSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~-~~~~~e~~~~~~~~~~~g~~~~ 74 (246)
..+++.+++.+++.+.+.+..+ ++.......+.+.+.+.|++++
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEE
Confidence 4578999999999999988655 2222222244445555555544
No 268
>KOG2157|consensus
Probab=54.52 E-value=20 Score=32.30 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176 (246)
Q Consensus 123 ~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~ 176 (246)
....|+||...+-|+|++++++.+++.......... .....++.+.++.||+.
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~-~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF-ISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc-ccccccccceeeeeccC
Confidence 457999999999999999999999886665321100 00111466888988864
No 269
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=53.76 E-value=38 Score=23.81 Aligned_cols=42 Identities=26% Similarity=0.452 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCH
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTA 78 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~ 78 (246)
..+++-|.+.++..++...+ ..+..+.+.+++.|++++|++.
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCc
Confidence 45566666778888776654 3556778888889999987764
No 270
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=53.73 E-value=38 Score=28.89 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCH--HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENA--SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~--~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
...+.+.+..++.+.|+++.-.-.-++.+ ..+...-+.|++++...+..+. .+. .+.+++++.|+|..-
T Consensus 110 ~~~~dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P~~ia--~~p-~~a~~f~e~glPi~G 180 (351)
T TIGR03450 110 AEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIA--SDP-EWAKKFTDAGVPIVG 180 (351)
T ss_pred cCHHHHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccCcccc--CCH-HHHHHHHHCCCCEec
Confidence 44567888899999998875431112332 2333444578887765554333 344 356667788888753
No 271
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=52.82 E-value=14 Score=32.57 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=27.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCC--eEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQ--ELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~--~~~v~ 243 (246)
..++||..|.|....++.|+.|..|+ ++++|
T Consensus 196 ~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 196 SRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred CEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 36999999999999999999999986 46665
No 272
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=52.62 E-value=14 Score=32.03 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.8
Q ss_pred cceeccccceeeeeeecCCCeeeCCC--eEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQ--ELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~--~~~v~e 244 (246)
-.++||..|.|.+..+..|+.|..|+ +|+.|.
T Consensus 170 t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 203 (385)
T PRK09859 170 ANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ 203 (385)
T ss_pred CEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence 45999999999999999999999996 476653
No 273
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=51.67 E-value=18 Score=31.17 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.2
Q ss_pred ceeccccceeeeeeecCCCeeeCCC---eEEEE
Q psy10619 214 ILHAPMPGLVKSVNCKVGDQIMEGQ---ELCVV 243 (246)
Q Consensus 214 ~l~sp~pg~i~~l~~~~G~~v~~g~---~~~v~ 243 (246)
.++||..|.|..+.+..|+.|..|+ +|+.|
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i 217 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTL 217 (370)
T ss_pred EEECCCCcEEEeeecCCCcEeecccCCceEEEE
Confidence 5999999999999999999998764 57665
No 274
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=50.83 E-value=18 Score=33.02 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.7
Q ss_pred ceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 221 GLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 221 g~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
|.+.+..++.||.|++||+|+.+|
T Consensus 127 g~I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 127 GNIARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred eEEEEEEecCCCEecCCCeeEEEe
Confidence 777888888888888888888776
No 275
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.21 E-value=13 Score=32.56 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.9
Q ss_pred eeeeecCCCeeeCCCeEEEE
Q psy10619 224 KSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 224 ~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+.|+.|+.|+.||+|..+
T Consensus 371 ~~i~v~~G~~V~AGepIa~~ 390 (420)
T COG4942 371 QSILVNPGQFVKAGEPIALV 390 (420)
T ss_pred ceeeecCCCEeecCCchhhc
Confidence 67899999999999999765
No 276
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=49.50 E-value=14 Score=26.79 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=18.6
Q ss_pred ceeeeee-ecCCCeeeCCCeEEEEcc
Q psy10619 221 GLVKSVN-CKVGDQIMEGQELCVVGK 245 (246)
Q Consensus 221 g~i~~l~-~~~G~~v~~g~~~~v~e~ 245 (246)
|-|.-+. -.+|..|++|+.+++||-
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vES 64 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVES 64 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEe
Confidence 4444433 357999999999999993
No 277
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=49.10 E-value=57 Score=26.98 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=33.4
Q ss_pred hhhccceeEEcCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeC
Q psy10619 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIG 75 (246)
Q Consensus 12 ~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g 75 (246)
.+.-||.++.+.. +.+..+.|...++++++..++...+...-....+..+.+.+++.|+++++
T Consensus 182 sl~~aD~ai~VTE-PTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s~ie~~~~e~gi~il~ 244 (284)
T COG1149 182 SLKGADLAILVTE-PTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDSEIEEYCEEEGIPILG 244 (284)
T ss_pred hhccCCEEEEEec-CCccchhHHHHHHHHHHHhCCceEEEEecCCCCchHHHHHHHHcCCCeeE
Confidence 3445676666543 22234556677777777777776554321111122455566666666653
No 278
>PRK13820 argininosuccinate synthase; Provisional
Probab=48.97 E-value=79 Score=27.72 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCEEccccccCC-CCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 34 VDKIIDAIRQTRADAVHPGYGFLS-ENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~~~~~-e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
...+.+++++++++.|..++-... ....+...+...++.++ .+..- ....|...+++++++|||++.
T Consensus 98 ~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~~l~vi-aP~re--~~ltK~ei~~ya~~~gip~~~ 165 (394)
T PRK13820 98 AEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRASDLEVI-APIRE--LNLTREWEIEYAKEKGIPVPV 165 (394)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhhcCeee-Cchhc--cCCCHHHHHHHHHHcCCCCCc
Confidence 356788899999999987652211 11222223333355555 22222 445899999999999999974
No 279
>PLN02522 ATP citrate (pro-S)-lyase
Probab=48.56 E-value=50 Score=30.72 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=40.2
Q ss_pred cceeEE-cCCCCcCCCCCCHHHHHHHHHHhCCCEEccccccCCCCH--HHHHHHHHcCCeEeCCCH
Q psy10619 16 ADEAVC-IGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA--SFVSRLKEEGVVFIGPTA 78 (246)
Q Consensus 16 ad~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~--~~~~~~~~~g~~~~g~~~ 78 (246)
||..++ +|+ +...+.+++.|.+.++..++...+++.|.. .+.+.+++.|++++||+.
T Consensus 79 ~~~~vifvp~------~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc 138 (608)
T PLN02522 79 ADVFINFASF------RSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPAT 138 (608)
T ss_pred CcEEEEeCCh------HHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCC
Confidence 666654 332 234588889998888988876665555543 567778889999998864
No 280
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=48.19 E-value=53 Score=28.06 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHH-HHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAEC-IRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~-~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
+.-...+-+.++.+|-....+....+.+++.+++.|+|+.|.+..+ .-...=|..+..+|+..|+.+-.|+
T Consensus 140 ~~YA~AAl~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~v~~~y 211 (351)
T TIGR03450 140 KFYAQCAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDDIKSQVGATITHRVLAKLFEDRGVRLDRTM 211 (351)
T ss_pred HHHHHHHHHcCCceEeccCccccCCHHHHHHHHHCCCCEecccccccCCCchHHHHHHHHHHHcCCceeeEE
Confidence 3334455677888876555555677789999999999999988653 2222336677888999999887764
No 281
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=47.83 E-value=57 Score=26.34 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=38.4
Q ss_pred CCHHHHHHHHH---HhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCC
Q psy10619 32 INVDKIIDAIR---QTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII 102 (246)
Q Consensus 32 ~~~~~l~~~~~---~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p 102 (246)
.+.+.+.+.++ ..+.|+|+..+-.+.....+.++-++.|+|++.++. ..+-..|+..|++.+
T Consensus 165 i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNq---------at~W~~Lr~~G~~~~ 229 (239)
T TIGR02990 165 ISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQ---------ATAWRCLRLCGDPDM 229 (239)
T ss_pred cCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHH---------HHHHHHHHHcCCCCC
Confidence 56778888777 457888887763333222334444568999983332 234456777887754
No 282
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.62 E-value=15 Score=33.82 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=25.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQEL 240 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~ 240 (246)
..+.+|..|.+.++.++.||.|..||.|
T Consensus 555 ~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 555 TEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred eEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 5689999999999999999999999975
No 283
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=45.58 E-value=20 Score=31.96 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=18.6
Q ss_pred eccccceeeeeeecCCCeeeCCCeEEE
Q psy10619 216 HAPMPGLVKSVNCKVGDQIMEGQELCV 242 (246)
Q Consensus 216 ~sp~pg~i~~l~~~~G~~v~~g~~~~v 242 (246)
.+.-.|.--++.|+.||.|++||.|..
T Consensus 33 l~q~~G~~~k~~Vk~GD~V~~Gq~I~~ 59 (447)
T TIGR01936 33 GRDFVGMRPKMKVRPGDKVKAGQPLFE 59 (447)
T ss_pred chhcCCCCCceEeCcCCEEcCCCEeEe
Confidence 334445666778888888888887764
No 284
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=45.01 E-value=97 Score=27.10 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCC-CHHHHHHHHHcC--CeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSE-NASFVSRLKEEG--VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e-~~~~~~~~~~~g--~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~ 104 (246)
+-...+++++++.++++|--+.-+.+. ...+-..+...+ +.++ .+..-.... +....++++++|||++.+
T Consensus 92 lIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~vi-aP~Rd~~~~--R~~~i~ya~~~gIpv~~~ 164 (388)
T PF00764_consen 92 LIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAPELKVI-APWRDWEFS--REEEIEYAKKHGIPVPVT 164 (388)
T ss_dssp HHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHSTTSEEE--GGGHHHHH--HHHHHHHHHHTT----SS
T ss_pred HHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCcCCcEe-cccchhhhh--HHHHHHHHHHcCCCCCCC
Confidence 445788899999999998755322111 123444444443 6776 454444443 667788999999999875
No 285
>PRK12342 hypothetical protein; Provisional
Probab=44.28 E-value=44 Score=27.33 Aligned_cols=59 Identities=12% Similarity=-0.052 Sum_probs=34.7
Q ss_pred cceeEEcCCC--CcCCCCCCHHHHHHHHHHhCCCEEcccccc-CCCCHHH-HHHHHHcCCeEe
Q psy10619 16 ADEAVCIGPP--VAAQSYINVDKIIDAIRQTRADAVHPGYGF-LSENASF-VSRLKEEGVVFI 74 (246)
Q Consensus 16 ad~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~-~~e~~~~-~~~~~~~g~~~~ 74 (246)
||+.+.+.-. .....+.+...|.+.+++.++|.|+.+... ......+ ....+.+|+|++
T Consensus 78 aD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 78 PHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVI 140 (254)
T ss_pred CCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcE
Confidence 7888877411 122334556778888888889999977532 1222222 233455677665
No 286
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=43.90 E-value=28 Score=24.89 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=12.5
Q ss_pred cCCCeeeCCCeEEEEcc
Q psy10619 229 KVGDQIMEGQELCVVGK 245 (246)
Q Consensus 229 ~~G~~v~~g~~~~v~e~ 245 (246)
+.|+.+++|+++++||-
T Consensus 40 ~~g~~~~~g~~~~~ies 56 (122)
T PF01597_consen 40 KVGTKLKKGDPFASIES 56 (122)
T ss_dssp -TT-EE-TTSEEEEEEE
T ss_pred cCCCEEecCCcEEEEEE
Confidence 45999999999999984
No 287
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=43.74 E-value=1.7e+02 Score=23.61 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCEEcccccc--CCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCC--CCCccccC
Q psy10619 35 DKIIDAIRQTRADAVHPGYGF--LSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII--PGFNGIIR 110 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~--~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p--~~~~~~~~ 110 (246)
..+.+++++.+++.|+.++.. ..+...-...+...++. .+ ......+|...+++++++|+|.. ++.....+
T Consensus 97 ~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~~~~~---~P--L~~~~l~K~eIr~la~~~gl~~~~~ps~~Cl~s 171 (252)
T TIGR00268 97 SILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKEFNGV---SP--WAEFGITKKEIREIAKSLGISFPDKPSEACLAS 171 (252)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHHcCCC---Cc--chhcCCCHHHHHHHHHHcCCCccCCCCCCceEe
Confidence 456678888999999887532 11111111223333331 11 12234689999999999999875 32111111
Q ss_pred --------------CHHHHHHHHHHhCCcEEEEeccCCCCceeEEe-CCHHHHHHHHHH
Q psy10619 111 --------------DADHCVEIARDIGYPVMIKASAGGGGKGMRIA-NNDQEAIEGFKL 154 (246)
Q Consensus 111 --------------~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v-~~~~el~~~~~~ 154 (246)
-.+.+.+++..+||.- +.-+.-+ ++.++ -.++++...+..
T Consensus 172 r~~~g~~it~~~l~~v~~~E~~l~~~g~~~-~rvr~~~---~~a~ie~~~~~~~~~~~~ 226 (252)
T TIGR00268 172 RFPFGREIDEEKLKMVDEAEEVLRNAGVGQ-VRVRNYD---NLAVIEVPEDELSKLLNE 226 (252)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHHHcCCCe-EEEEecC---CeEEEEECHHHHHHHHhh
Confidence 1455666677788753 3333321 23333 355666655543
No 288
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=42.82 E-value=71 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
+.....++|++.|+++++.+ ..+.+.+++.++.+.+
T Consensus 228 t~~e~l~~L~~~GF~v~~~~-~~~~~~~ev~~~~~~~ 263 (307)
T cd00114 228 TQSEALAFLKEWGFPVSPET-RLCKNIEEVLAFYDEI 263 (307)
T ss_pred CHHHHHHHHHHCCCCCCCCe-EEeCCHHHHHHHHHHH
Confidence 44556677888888888753 3567777777665543
No 289
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=41.66 E-value=19 Score=32.08 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=21.9
Q ss_pred eccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 216 HAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 216 ~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
.+.-.|.--++.|++||.|++||.|..-
T Consensus 34 l~qh~G~~~~~~V~~GD~V~~Gq~I~~~ 61 (448)
T PRK05352 34 GEDYVGLRPKMKVKEGDKVKKGQPLFED 61 (448)
T ss_pred chhcCCCCCceEeCcCCEEcCCCEeEec
Confidence 3334466678999999999999999753
No 290
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=41.35 E-value=47 Score=26.90 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=7.8
Q ss_pred HHHHHHHHhCCCEEccc
Q psy10619 36 KIIDAIRQTRADAVHPG 52 (246)
Q Consensus 36 ~l~~~~~~~~~d~v~~~ 52 (246)
.|.+.|++.+++++...
T Consensus 60 ~L~~~~~~~gi~f~stp 76 (241)
T PF03102_consen 60 ELFEYCKELGIDFFSTP 76 (241)
T ss_dssp HHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHcCCEEEECC
Confidence 44445555555544433
No 291
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=41.25 E-value=58 Score=23.97 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=30.6
Q ss_pred hhhccceeEEcCCCCcCCCCCCHHHH-HHHHHHhCCCEEccccccCCCCHHHHHHHHHcCC
Q psy10619 12 HVKLADEAVCIGPPVAAQSYINVDKI-IDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71 (246)
Q Consensus 12 ~~~~ad~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~ 71 (246)
+++..|+++.-.| ..+ .+.+++.++|.|..+.........+...+.++|+
T Consensus 62 s~ryVD~vi~~~p----------~~~~~~~i~~~k~Div~lG~D~~~d~~~l~~~~~k~G~ 112 (140)
T COG0615 62 SLRYVDEVILGAP----------WDIKFEDIEEYKPDIVVLGDDQKFDEDDLKYELVKRGL 112 (140)
T ss_pred cCcchheeeeCCc----------cccChHHHHHhCCCEEEECCCCcCChHHHHHHHHHcCC
Confidence 4566777775322 122 4567788888888776544444556666666665
No 292
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=41.22 E-value=22 Score=26.50 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=24.2
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
....-|+-|...-.-+..|+.|.+||.++.+
T Consensus 81 ~L~l~~veG~~v~~i~~~G~rV~~gd~lA~v 111 (150)
T PF09891_consen 81 ELCLVPVEGYQVYPIVDEGDRVRKGDRLAYV 111 (150)
T ss_dssp B-EEEEEESSEEEESS-TSEEE-TT-EEEEE
T ss_pred EEEEEEecceEEEEEcccCcEeccCcEEEEE
Confidence 4577889999999999999999999999876
No 293
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=41.06 E-value=95 Score=26.64 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=47.3
Q ss_pred HHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHH-HHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 38 IDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE-CIRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 38 ~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~-~~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
.+.+-+.+..+|=....+.+.++.+.+.+++.|+|++|.+-. .+-..-=+....++|++.|+.+-.++
T Consensus 152 A~aal~aG~afvN~~P~~iA~dP~~~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~ 220 (362)
T COG1260 152 AAAALAAGVAFVNAIPVFIASDPAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTY 220 (362)
T ss_pred HHHHHHcCCceecccCccccCCHHHHHHHHHcCCceeccchhhhcCCceeHHHHHHHHHHcCceeeeEE
Confidence 334445566666544445667788899999999999998864 33333446667888888898887654
No 294
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=40.25 E-value=22 Score=30.04 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=18.4
Q ss_pred eeeeeecCCCeeeCCCeEEEEc
Q psy10619 223 VKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 223 i~~l~~~~G~~v~~g~~~~v~e 244 (246)
+..+.|+.||.|++||.|..+-
T Consensus 269 l~~i~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 269 NDTMLVREQQEVKAGQKIATMG 290 (319)
T ss_pred CCccccCCcCEECCCCeEEeEc
Confidence 3567899999999999998764
No 295
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.18 E-value=2.1e+02 Score=23.52 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHcCCeEe---CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccC
Q psy10619 57 SENASFVSRLKEEGVVFI---GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAG 133 (246)
Q Consensus 57 ~e~~~~~~~~~~~g~~~~---g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g 133 (246)
..+..+++.|++.|...+ |++-.+=.-..|+...+.+.+...+|+.-.. =+.+.+++..+. ++|.--|+
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdA--GIgt~sDa~~Am-ElGaDgVL----- 216 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDA--GIGTPSEASQAM-ELGASGVL----- 216 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeC--CcCCHHHHHHHH-HcCCCEEe-----
Confidence 466778888888887554 2333333455788888888888888876532 467777776544 35532221
Q ss_pred CCCceeEEeCCHHHHHHHHHHHHHHHHhhc
Q psy10619 134 GGGKGMRIANNDQEAIEGFKLSSQEAAASF 163 (246)
Q Consensus 134 ~g~~gv~~v~~~~el~~~~~~~~~~~~~~~ 163 (246)
-..|+....|+.++..+++......+..|
T Consensus 217 -~nSaIakA~dP~~mA~a~~~AV~AGR~A~ 245 (267)
T CHL00162 217 -LNTAVAQAKNPEQMAKAMKLAVQAGRLAY 245 (267)
T ss_pred -ecceeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 22356677899898888888776655444
No 296
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=39.59 E-value=2.1e+02 Score=23.40 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCC--CCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCce
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNI--IPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKG 138 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~g 138 (246)
.+.+.+++.|++++... .|.... +++.+. ++. .++. .+.+.+ +...+.+.|-|+++|--..
T Consensus 80 ~l~~~~~~~Gl~~~t~~-------~d~~~~-~~l~~~-~d~lkI~s~--~~~n~~-LL~~~a~~gkPVilk~G~~----- 142 (260)
T TIGR01361 80 LLRRAADEHGLPVVTEV-------MDPRDV-EIVAEY-ADILQIGAR--NMQNFE-LLKEVGKQGKPVLLKRGMG----- 142 (260)
T ss_pred HHHHHHHHhCCCEEEee-------CChhhH-HHHHhh-CCEEEECcc--cccCHH-HHHHHhcCCCcEEEeCCCC-----
Confidence 56777888999887433 222222 223333 332 2221 345544 5556677889999985332
Q ss_pred eEEeCCHHHHHHHHHHHHHHHHhhcCCCceEE-Ee
Q psy10619 139 MRIANNDQEAIEGFKLSSQEAAASFGDDRILV-EK 172 (246)
Q Consensus 139 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lv-e~ 172 (246)
.+.+|+..+++.+.. .++.++++ +.
T Consensus 143 ----~t~~e~~~Ave~i~~-----~Gn~~i~l~~r 168 (260)
T TIGR01361 143 ----NTIEEWLYAAEYILS-----SGNGNVILCER 168 (260)
T ss_pred ----CCHHHHHHHHHHHHH-----cCCCcEEEEEC
Confidence 368899888888754 24555554 44
No 297
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=38.34 E-value=49 Score=22.74 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHhCCCEEcccc---ccCCCCHHHHHHHHHcCCeEeCCC
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGY---GFLSENASFVSRLKEEGVVFIGPT 77 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~---~~~~e~~~~~~~~~~~g~~~~g~~ 77 (246)
+..+...+.++++...+|++.+-. |++.+...+++.++..|+++.-.+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC
Confidence 345778899999999999887663 455555677888889999887444
No 298
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=38.31 E-value=72 Score=27.18 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeE
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~ 140 (246)
.+.+.+++.|+.++..+. |.. .-++|.++|++.-+--+..+++.. +.+.+++.|-|+++|- |+
T Consensus 80 ~L~~~~~~~Gi~~~stpf-------d~~-svd~l~~~~v~~~KIaS~~~~n~p-LL~~~A~~gkPvilSt-------Gm- 142 (329)
T TIGR03569 80 ELKEYCESKGIEFLSTPF-------DLE-SADFLEDLGVPRFKIPSGEITNAP-LLKKIARFGKPVILST-------GM- 142 (329)
T ss_pred HHHHHHHHhCCcEEEEeC-------CHH-HHHHHHhcCCCEEEECcccccCHH-HHHHHHhcCCcEEEEC-------CC-
Confidence 344555566666653332 221 124455566655331122334433 3344455566666652 22
Q ss_pred EeCCHHHHHHHHHHHH
Q psy10619 141 IANNDQEAIEGFKLSS 156 (246)
Q Consensus 141 ~v~~~~el~~~~~~~~ 156 (246)
.+.+|+..+++.+.
T Consensus 143 --atl~Ei~~Av~~i~ 156 (329)
T TIGR03569 143 --ATLEEIEAAVGVLR 156 (329)
T ss_pred --CCHHHHHHHHHHHH
Confidence 25566666665554
No 299
>PRK05370 argininosuccinate synthase; Validated
Probab=38.02 E-value=1.9e+02 Score=25.78 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCC-HHHHHHHHHc--CCeEeCCCHHHHHHh---cCHHHHHHHHHHhCCCCCC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSEN-ASFVSRLKEE--GVVFIGPTAECIRGM---GDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~-~~~~~~~~~~--g~~~~g~~~~~~~~~---~dK~~~~~~l~~~gip~p~ 103 (246)
++....++++++++++++|--++-+-+.+ ..+-..+..+ .+.++ .+..-..+. ..+....++++++|||+|.
T Consensus 108 plia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~Vi-aPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~ 185 (447)
T PRK05370 108 AVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPELKIY-KPWLDQDFIDELGGRAEMSEFLIAHGFDYKM 185 (447)
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEe-cchhhhhcccccCCHHHHHHHHHHcCCCCCc
Confidence 35567889999999999987554222222 2333333333 34555 443333331 2778889999999999884
No 300
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=37.32 E-value=2.1e+02 Score=22.63 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII 109 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 109 (246)
+|...+.+.+..+..+.++.++. |...-...+....++.|+ ++.+..... -..+++.++++||..|..+.+.
T Consensus 41 ~~v~~Dvl~R~lr~~G~~V~~~~-g~dd~g~ki~~~A~~~g~----~p~e~~~~~--~~~f~~~~~~l~i~~~d~~~rt- 112 (213)
T cd00672 41 TYVVFDVLRRYLEDLGYKVRYVQ-NITDIDDKIIKRAREEGL----SWKEVADYY--TKEFFEDMKALNVLPPDVVPRV- 112 (213)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEe-ecCCCCCHHHHHHHHcCC----CHHHHHHHH--HHHHHHHHHHcCCCCCCcceee-
Confidence 36667888899999999988766 222122244555566665 333444443 3347889999999987654222
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHH
Q psy10619 110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEA 148 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el 148 (246)
...+-...+.+.+|.|+ .--.||.-...-+-..++
T Consensus 113 Wh~ec~am~~~~lg~~~----dih~~G~Dl~fpH~~~~~ 147 (213)
T cd00672 113 WHIECSAMAMKYLGETF----DIHGGGVDLIFPHHENEI 147 (213)
T ss_pred hhHHHHHHHHHHcCCCc----cEEeecCCCCcChHHHHH
Confidence 23333333334556543 112344444444444443
No 301
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.15 E-value=49 Score=26.23 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHH---hCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHH
Q psy10619 32 INVDKIIDAIRQ---TRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRG 83 (246)
Q Consensus 32 ~~~~~l~~~~~~---~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~ 83 (246)
.++..+++++++ -+.|++|..+-.+-....+..+-+..|+|++.++..++..
T Consensus 163 ~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~AT~W~ 217 (238)
T COG3473 163 QEPWAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQATLWM 217 (238)
T ss_pred cChHHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccHHHHHH
Confidence 455666666665 5677887765332222233444456788888665555443
No 302
>PRK04527 argininosuccinate synthase; Provisional
Probab=37.13 E-value=1.4e+02 Score=26.27 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhCCCEEccccccC-CCCH---HHHHHHHHcCCeEeCCCHHHHHHh--cCHHHHHHHHHHhCCCCCCC
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFL-SENA---SFVSRLKEEGVVFIGPTAECIRGM--GDKLESKKLAKEAGVNIIPG 104 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~-~e~~---~~~~~~~~~g~~~~g~~~~~~~~~--~dK~~~~~~l~~~gip~p~~ 104 (246)
-...+.+++++++++.|..+.-.. .... .-.+.+.+.++ + .+..-..+. ..+....++++++|||++.+
T Consensus 97 ~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~el~V--i-aPlre~~~~k~~~R~~~i~ya~~~gipv~~~ 171 (400)
T PRK04527 97 IVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALGDYQI--V-APIREIQKEHTQTRAYEQKYLEERGFGVRAK 171 (400)
T ss_pred HHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhhcCCc--c-chHHHhcCcccccHHHHHHHHHHcCCCCCCC
Confidence 456888999999999998775211 1111 22334445554 3 333333221 25667789999999999853
No 303
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=37.11 E-value=66 Score=26.33 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=32.1
Q ss_pred cceeEEcCCC--CcCCCCCCHHHHHHHHHHhCCCEEccccccC-CCCHHH-HHHHHHcCCeEe
Q psy10619 16 ADEAVCIGPP--VAAQSYINVDKIIDAIRQTRADAVHPGYGFL-SENASF-VSRLKEEGVVFI 74 (246)
Q Consensus 16 ad~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~-~e~~~~-~~~~~~~g~~~~ 74 (246)
||+.+.+.-. .....+.+...|.+.+++.++|.|+.+.... +....+ ....+.+|+|++
T Consensus 81 aD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 81 PDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred CCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCce
Confidence 7877776421 1123345556777788888888888775321 111111 233445566655
No 304
>KOG2310|consensus
Probab=37.08 E-value=18 Score=32.74 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=38.5
Q ss_pred cCCCCCCHHHHHHHHHHhCCCEEccccccCCCCH----HHHHHHHHcCCeEeCCCHHHHHHhcCH
Q psy10619 27 AAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA----SFVSRLKEEGVVFIGPTAECIRGMGDK 87 (246)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~----~~~~~~~~~g~~~~g~~~~~~~~~~dK 87 (246)
...+|.+.+.|+.++++.++|+|+.+=.-+.++. .+.+.++.+..-++|..+-.+++..|.
T Consensus 34 g~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~ 98 (646)
T KOG2310|consen 34 GDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQ 98 (646)
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEeccc
Confidence 3467889999999999999999997733344543 333334333334455555555554443
No 305
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=36.91 E-value=2e+02 Score=22.37 Aligned_cols=112 Identities=6% Similarity=-0.086 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCe-----EeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV-----FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~-----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
|.....+++.+++.++...+.+.+. ...+...++..|+. +++.. ..-..-.+...+..+++++|++.-..+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~-~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGLASASP---LHMLEAVLTMFDLRDYFDALASAE-KLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHhCcchhcccEEEEcc-cCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 3456777777777777766655311 11223344444431 11111 100111234467888899998643332
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEEeccCCCC-----ceeEEeCCHHHH
Q psy10619 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGG-----KGMRIANNDQEA 148 (246)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~-----~gv~~v~~~~el 148 (246)
.+-++..++ .++...|.+.+.-+...... ....++++..|+
T Consensus 170 -~igDs~~Di-~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl 215 (222)
T PRK10826 170 -ALEDSFNGM-IAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTEL 215 (222)
T ss_pred -EEcCChhhH-HHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHH
Confidence 122344443 45677888877765543221 123345666655
No 306
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=36.78 E-value=86 Score=27.68 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCEEcccc----ccCC--CC-----HHHHHHHHHcCCeEe--CCCHHHHHHhcCHHHHHHHHHHhCCC
Q psy10619 34 VDKIIDAIRQTRADAVHPGY----GFLS--EN-----ASFVSRLKEEGVVFI--GPTAECIRGMGDKLESKKLAKEAGVN 100 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~----~~~~--e~-----~~~~~~~~~~g~~~~--g~~~~~~~~~~dK~~~~~~l~~~gip 100 (246)
.+.|.++.++-.|-.+.+.+ |... .+ .++++.|.+.|+... .+.--+.. +.=..|-+-++++|||
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCt--rcga~m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCT--RCGATMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcch--hHHHHHHHHHHHcCCC
Confidence 36777777776665554432 1111 01 145556666665221 11111111 2233466678888888
Q ss_pred CCCCCccccCCHHHHHHHHHHhCCcEEEEe
Q psy10619 101 IIPGFNGIIRDADHCVEIARDIGYPVMIKA 130 (246)
Q Consensus 101 ~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp 130 (246)
+..- .+ +...+..+|-|=+|.+
T Consensus 367 vV~i-----~~---~~pI~~~vGanRiv~~ 388 (431)
T TIGR01917 367 VVHI-----CT---VTPIALTVGANRIIPA 388 (431)
T ss_pred EEEE-----ee---chhHHHhcCCCceecC
Confidence 8761 11 2234456677767764
No 307
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.38 E-value=98 Score=21.25 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=8.0
Q ss_pred HHHHHHHHhCCCEEcc
Q psy10619 36 KIIDAIRQTRADAVHP 51 (246)
Q Consensus 36 ~l~~~~~~~~~d~v~~ 51 (246)
.+.+.+++.++|.|+.
T Consensus 58 ~i~~~i~~~~id~vIn 73 (110)
T cd01424 58 NIVDLIKNGEIQLVIN 73 (110)
T ss_pred hHHHHHHcCCeEEEEE
Confidence 4444555555555544
No 308
>PRK00509 argininosuccinate synthase; Provisional
Probab=35.89 E-value=99 Score=27.16 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCEEccccccC-CCCHHH---HHHHH-HcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 34 VDKIIDAIRQTRADAVHPGYGFL-SENASF---VSRLK-EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~~~~-~e~~~~---~~~~~-~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
...+.++++++++++|.-++-.. .....+ ...+. +. .++ .+..-. .+..|...+++++++|||++.
T Consensus 98 ~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~g~~al~pel--~Vi-sPlre~-~~~tK~eir~~A~~~Gipv~~ 168 (399)
T PRK00509 98 AKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDL--KVI-APWREW-DLKSREELIAYAEEHGIPIPV 168 (399)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHHHHHHhCCCC--eee-cchhhc-CCCCHHHHHHHHHHcCCCCCC
Confidence 56788899999999987665221 122233 22333 33 334 222211 223899999999999999974
No 309
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=35.42 E-value=55 Score=26.71 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcc
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNG 107 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~ 107 (246)
.+++.+.+.++++++++|.++-..-.+... ....+.+++.|+|++-- .+-++. .+ .+.++
T Consensus 51 G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~-------eRP~~~-------~~--gd~~~-- 112 (257)
T COG2099 51 GFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL-------ERPPWA-------PN--GDNWI-- 112 (257)
T ss_pred CcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE-------ECCccc-------cC--CCceE--
Confidence 367888999999999999887442111111 13456667777776511 111110 00 23333
Q ss_pred ccCCHHHHHHHHHHhC
Q psy10619 108 IIRDADHCVEIARDIG 123 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~ 123 (246)
.+.+.+++.+.+.+.+
T Consensus 113 ~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 113 EVADIEEAAEAAKQLG 128 (257)
T ss_pred EecCHHHHHHHHhccC
Confidence 5778888877776665
No 310
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=35.26 E-value=2.5e+02 Score=22.94 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCH----HHHHHHHHcCCeEe-CCCHHHHHHhcCHHHHHHHHH--HhCCCCCCCCcc
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENA----SFVSRLKEEGVVFI-GPTAECIRGMGDKLESKKLAK--EAGVNIIPGFNG 107 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~----~~~~~~~~~g~~~~-g~~~~~~~~~~dK~~~~~~l~--~~gip~p~~~~~ 107 (246)
..+.+++...++|+|+...+.-.-+. .+...++..|+..+ -.+ ..|....++.|. ..||-.|.
T Consensus 30 p~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp------~~~~~~i~r~LD~Ga~giivP~---- 99 (256)
T PRK10558 30 PITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVP------TNEPVIIKRLLDIGFYNFLIPF---- 99 (256)
T ss_pred cHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECC------CCCHHHHHHHhCCCCCeeeecC----
Confidence 57788888999999998754211111 33444555665322 111 134444555554 24665554
Q ss_pred ccCCHHHHHHHHHHhCCc
Q psy10619 108 IIRDADHCVEIARDIGYP 125 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~~P 125 (246)
+++.+++.++.+...||
T Consensus 100 -v~tae~a~~~v~a~kyp 116 (256)
T PRK10558 100 -VETAEEARRAVASTRYP 116 (256)
T ss_pred -cCCHHHHHHHHHHcCCC
Confidence 78999999999988998
No 311
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=35.24 E-value=59 Score=26.46 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEe
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFI 74 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~ 74 (246)
+.+.+.++++++++++|+-..-.++.. ....+.+++.|+|++
T Consensus 53 ~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 789999999999999998543222211 145667788888776
No 312
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.16 E-value=62 Score=24.51 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCe
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~ 72 (246)
+.+.+++.+++.++|+|+.+.|.--....+.+.....+.+
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~ 128 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAG 128 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 4577888888888888888876422222334444444443
No 313
>PRK00208 thiG thiazole synthase; Reviewed
Probab=34.85 E-value=2.1e+02 Score=23.39 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHhCCCEEcccc---ccCCCCHHHHHHHHHcCCeEe
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGY---GFLSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~---~~~~e~~~~~~~~~~~g~~~~ 74 (246)
..|.+.+.+.+.++..+.++|.... ........+.+.+...++.++
T Consensus 18 gky~s~~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~~~~~~l 66 (250)
T PRK00208 18 GKYPSPQVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPPLGVTLL 66 (250)
T ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccccCCEEC
Confidence 4577888888888888888876553 111122355666666677665
No 314
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.46 E-value=1.5e+02 Score=21.27 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCC-HHHHHHHHHHHHH
Q psy10619 109 IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN-DQEAIEGFKLSSQ 157 (246)
Q Consensus 109 ~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~-~~el~~~~~~~~~ 157 (246)
..++.++..++..+++|+.||-.+-+ . +++. .+++....+.+..
T Consensus 16 ~vsp~elv~~l~~~~~PvtiKeTCfG----a-ii~G~Ed~v~klveriR~ 60 (142)
T COG4029 16 GVSPKELVQKLLELSPPVTIKETCFG----A-IIDGPEDEVRKLVERIRE 60 (142)
T ss_pred CcChHHHHHHHHhcCCCeEeeeeeee----e-eecCcHHHHHHHHHHHHH
Confidence 45788888899999999999987654 2 4544 4555666665543
No 315
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=34.36 E-value=58 Score=28.30 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhCCCEEccccc-----cCCCCHHHHHHHHHcCCeEe
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYG-----FLSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~-----~~~e~~~~~~~~~~~g~~~~ 74 (246)
-.+.+.+.+++.++|+|+-..- ...+...+.+.+++.|+|++
T Consensus 309 R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 3567888899999998874420 11233344555666666655
No 316
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=34.36 E-value=95 Score=25.96 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCH--HHHHHHHHcCCeEeCCCHHHHHH
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENA--SFVSRLKEEGVVFIGPTAECIRG 83 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~--~~~~~~~~~g~~~~g~~~~~~~~ 83 (246)
..+++-|-+.++..++...+.+.+.. .+.+..++.|++++||+.--+..
T Consensus 79 ~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~ 129 (291)
T PRK05678 79 ADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIIT 129 (291)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccc
Confidence 34444555667776554433334444 66777788888888887554433
No 317
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=34.04 E-value=2.8e+02 Score=23.29 Aligned_cols=98 Identities=17% Similarity=0.315 Sum_probs=56.6
Q ss_pred cccCCCCHHHHHHHHHcCCeEeCCCHHHHH--------HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC
Q psy10619 53 YGFLSENASFVSRLKEEGVVFIGPTAECIR--------GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124 (246)
Q Consensus 53 ~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~--------~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~ 124 (246)
.|.+--|+.+.+.|++.|+.++. +.+-+. .-.=-...++.+++.|+.+....--.+...........+-||
T Consensus 36 lG~iIHN~~vv~~L~~~GV~~v~-~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy 114 (298)
T PRK01045 36 RHEIVHNRYVVERLEKKGAIFVE-ELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGY 114 (298)
T ss_pred EecCccCHHHHHHHHHCCCEEec-CcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCC
Confidence 35556778889999999998873 222111 001122456778889988776431123334443333445588
Q ss_pred cEEE---------EeccCCCCceeEEeCCHHHHHHH
Q psy10619 125 PVMI---------KASAGGGGKGMRIANNDQEAIEG 151 (246)
Q Consensus 125 P~vv---------Kp~~g~g~~gv~~v~~~~el~~~ 151 (246)
-+|+ +...|.......++.+.+|++..
T Consensus 115 ~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l 150 (298)
T PRK01045 115 EIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKL 150 (298)
T ss_pred EEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhc
Confidence 7766 23334333345677888887653
No 318
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.92 E-value=2.8e+02 Score=23.11 Aligned_cols=98 Identities=27% Similarity=0.292 Sum_probs=55.3
Q ss_pred cccCCCCHHHHHHHHHcCCeEe--CCCHHHH-------HHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhC
Q psy10619 53 YGFLSENASFVSRLKEEGVVFI--GPTAECI-------RGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG 123 (246)
Q Consensus 53 ~~~~~e~~~~~~~~~~~g~~~~--g~~~~~~-------~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~ 123 (246)
.|.+--|+.+.+.|++.|+.++ ..-.+.- +.-.=-...++.+++.|+.+...+--.+...........+-|
T Consensus 37 lG~iVHN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~G 116 (281)
T PRK12360 37 LGPLIHNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKG 116 (281)
T ss_pred ecCCcCCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCC
Confidence 4555678888999999999987 3211000 000112245677888888876643112333333333344558
Q ss_pred CcEEE---------EeccCCCCceeEEeCCHHHHHH
Q psy10619 124 YPVMI---------KASAGGGGKGMRIANNDQEAIE 150 (246)
Q Consensus 124 ~P~vv---------Kp~~g~g~~gv~~v~~~~el~~ 150 (246)
|-+|+ +...|.......++.+.+|++.
T Consensus 117 y~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~ 152 (281)
T PRK12360 117 YSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVEN 152 (281)
T ss_pred CEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhh
Confidence 88776 2233333334567888888755
No 319
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.91 E-value=54 Score=26.67 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEe
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFI 74 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~ 74 (246)
+.+.+.+++++++++.|+-..-.++.. ....+.+++.|+|++
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence 889999999999999998542111111 145567777888776
No 320
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=33.68 E-value=28 Score=19.92 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=9.9
Q ss_pred eeeCCCeEEEEccC
Q psy10619 233 QIMEGQELCVVGKT 246 (246)
Q Consensus 233 ~v~~g~~~~v~e~~ 246 (246)
.+++||.|.|||++
T Consensus 15 s~~~Gd~i~v~~~~ 28 (48)
T PF00018_consen 15 SFKKGDIIEVLEKS 28 (48)
T ss_dssp EB-TTEEEEEEEES
T ss_pred eEECCCEEEEEEec
Confidence 46788888888864
No 321
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=33.67 E-value=1.6e+02 Score=20.33 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCC
Q psy10619 34 VDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNI 101 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~ 101 (246)
...+.+.++..+.|+.+-.+ ....+.+...+..+-++||-..-. +..+++.+...|+|+
T Consensus 18 V~Km~~aA~~kg~~~~I~A~----s~~e~~~~~~~~DvvLlGPQv~y~-----~~~~~~~~~~~giPV 76 (102)
T COG1440 18 VTKMKKAAESKGKDVTIEAY----SETELSEYIDNADVVLLGPQVRYM-----LKQLKEAAEEKGIPV 76 (102)
T ss_pred HHHHHHHHHhCCCceEEEEe----chhHHHHhhhcCCEEEEChHHHHH-----HHHHHHHhcccCCCe
Confidence 56778888999999888555 223556677788888887753322 455778888888886
No 322
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.56 E-value=1e+02 Score=27.28 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=9.3
Q ss_pred HHHHHHHHhCCCCCC
Q psy10619 89 ESKKLAKEAGVNIIP 103 (246)
Q Consensus 89 ~~~~~l~~~gip~p~ 103 (246)
.|-+-++++|||+..
T Consensus 355 ~m~keiE~~GiPvv~ 369 (431)
T TIGR01918 355 TMVKEIERAGIPVVH 369 (431)
T ss_pred HHHHHHHHcCCCEEE
Confidence 355556667777654
No 323
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=33.41 E-value=2e+02 Score=23.69 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCH----HHHHHHHHcCCeEe-CCCHHHHHHhcCHHHHHHHHH--HhCCCCCCCCcc
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENA----SFVSRLKEEGVVFI-GPTAECIRGMGDKLESKKLAK--EAGVNIIPGFNG 107 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~----~~~~~~~~~g~~~~-g~~~~~~~~~~dK~~~~~~l~--~~gip~p~~~~~ 107 (246)
..+.+++...++|+|+...+.-.-+. .+...++..|+..+ -.+ ..|....++.|. ..||-+|.
T Consensus 29 p~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp------~~~~~~i~r~LD~GA~GIivP~---- 98 (267)
T PRK10128 29 SYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV------EGSKPLIKQVLDIGAQTLLIPM---- 98 (267)
T ss_pred cHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC------CCCHHHHHHHhCCCCCeeEecC----
Confidence 56778888889999998754211111 33445555665322 111 123444555554 36677775
Q ss_pred ccCCHHHHHHHHHHhCCc
Q psy10619 108 IIRDADHCVEIARDIGYP 125 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~~P 125 (246)
+++.+++.++.+...||
T Consensus 99 -V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 99 -VDTAEQARQVVSATRYP 115 (267)
T ss_pred -cCCHHHHHHHHHhcCCC
Confidence 78999999999988897
No 324
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=33.40 E-value=1.5e+02 Score=22.23 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=20.8
Q ss_pred HHHHHHhCCCEEccccccC--CCCHHHHHHHHHcCCeEe
Q psy10619 38 IDAIRQTRADAVHPGYGFL--SENASFVSRLKEEGVVFI 74 (246)
Q Consensus 38 ~~~~~~~~~d~v~~~~~~~--~e~~~~~~~~~~~g~~~~ 74 (246)
.+.....++|+++...+.. ..+..+...+.+.|+|++
T Consensus 71 ~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~v 109 (156)
T PF02421_consen 71 RDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVV 109 (156)
T ss_dssp HHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4455578899988665321 111234445556777665
No 325
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=33.15 E-value=2.7e+02 Score=22.72 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHh---CCCEEccccccCCCCHHHHHHHHHcCCeEeCC--CH-HHHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 32 INVDKIIDAIRQT---RADAVHPGYGFLSENASFVSRLKEEGVVFIGP--TA-ECIRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 32 ~~~~~l~~~~~~~---~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~--~~-~~~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
.+....++.+++. ++..+-.. ..+...++.+++.|...+-| ++ .+-.-..|+...+.+.+..++|+.-.
T Consensus 107 pd~~~tv~aa~~L~~~Gf~vlpyc----~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e- 181 (248)
T cd04728 107 PDPIETLKAAEILVKEGFTVLPYC----TDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD- 181 (248)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEe----CCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe-
Confidence 3455666666665 55444111 25556666677666655522 00 00012234555555555555555432
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhc
Q psy10619 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF 163 (246)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~ 163 (246)
.-+.+++++..+.+ +|.-.|+ -+.++....|+.....+|.......+..|
T Consensus 182 -gGI~tpeda~~Ame-lGAdgVl------V~SAIt~a~dP~~ma~af~~Av~aGr~a~ 231 (248)
T cd04728 182 -AGIGTPSDAAQAME-LGADAVL------LNTAIAKAKDPVAMARAFKLAVEAGRLAY 231 (248)
T ss_pred -CCCCCHHHHHHHHH-cCCCEEE------EChHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23566777665543 3321111 12233344678888888887776555444
No 326
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=32.97 E-value=1.5e+02 Score=25.48 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHhCCc--EEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCC---CceEEEecccCcce
Q psy10619 110 RDADHCVEIARDIGYP--VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD---DRILVEKFIKNPRH 179 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~P--~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~---~~~lve~~i~~g~e 179 (246)
.+...+....+..+.| +||=|..+.+++-.. .-..=+.+.++++. .+. .++|+|.|+..|.-
T Consensus 239 ~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~~~--~q~~va~~v~~qi~------~G~~~I~GvMiES~l~~G~Q 305 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLMIDFSHGNSNKDHR--RQPDVAEDVCEQIA------NGSKAIIGVMIESNLVEGNQ 305 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCcccccchh--hhHHHHHHHHHHHH------cCCccceEEEEEecCCcCCC
Confidence 4555556566777889 999999988765432 11111222333332 123 38999999986653
No 327
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.95 E-value=79 Score=27.44 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=35.3
Q ss_pred hhhhccceeEEcCCCCcC--CCCCCHHHHHHHHHHhCCCEEcccc----c-cCCCCHHHHHHHHHcCCeEe
Q psy10619 11 RHVKLADEAVCIGPPVAA--QSYINVDKIIDAIRQTRADAVHPGY----G-FLSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 11 ~~~~~ad~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~d~v~~~~----~-~~~e~~~~~~~~~~~g~~~~ 74 (246)
+--.+|+.....++.+.- ....-.+.+.+.+++.++|+||-.. . ...+...+.+.+++.|+|++
T Consensus 277 pl~alA~~yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L 347 (377)
T TIGR03190 277 VIKAIAERYCDRPACPTKDYPVHTRYDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTL 347 (377)
T ss_pred HHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEE
Confidence 445567766533222211 0112356788889999999987442 1 11233345566666677665
No 328
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=32.92 E-value=65 Score=24.99 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHHH----HhCCCEEccccccCCCC-HHHHHHHHHcCCeEeCCCHHHH
Q psy10619 35 DKIIDAIR----QTRADAVHPGYGFLSEN-ASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 35 ~~l~~~~~----~~~~d~v~~~~~~~~e~-~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
+.+.+.++ +.++|+|+.++..++-. ........+.|+|++-+...++
T Consensus 161 ~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~ 212 (216)
T PF01177_consen 161 EILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAA 212 (216)
T ss_dssp HHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHH
Confidence 35555555 78999999987544433 2233444556999984444433
No 329
>PRK07945 hypothetical protein; Provisional
Probab=32.78 E-value=2.3e+02 Score=24.21 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHhCCCEEccccccC-CCCHHHHHHHHHcCCeEe-CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFL-SENASFVSRLKEEGVVFI-GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~-~e~~~~~~~~~~~g~~~~-g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
+.+.+++.+++.+.-+=+.+.+.. .....+.+.+.+.|+++. |++........+-....+.+++.|++.-. + ....
T Consensus 246 ~~~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~~v~~~~~~~~~a~~~g~~~~~-i-~n~~ 323 (335)
T PRK07945 246 DAEAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCLFSIDTDAHAPGQLDWLGYGCERAEEAGVPADR-I-VNTW 323 (335)
T ss_pred CHHHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCCCCChhhcchHHHHHHHHHHcCCCHHH-c-ccCC
Confidence 356777777776655444432211 122355666667776654 44445555555555567777777775432 1 0122
Q ss_pred CHHHHHHHH
Q psy10619 111 DADHCVEIA 119 (246)
Q Consensus 111 ~~~~~~~~~ 119 (246)
+.+.+.+++
T Consensus 324 ~~~~~~~~~ 332 (335)
T PRK07945 324 PADRLLAWT 332 (335)
T ss_pred CHHHHHHHH
Confidence 345555554
No 330
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=32.77 E-value=57 Score=28.14 Aligned_cols=61 Identities=26% Similarity=0.246 Sum_probs=38.9
Q ss_pred hccceeEEcCCCCcC-CCCCCHHHHHHHHHHhCCCEEccccc-----cCCCCHHHHHHHHHcCCeEe
Q psy10619 14 KLADEAVCIGPPVAA-QSYINVDKIIDAIRQTRADAVHPGYG-----FLSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 14 ~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~v~~~~~-----~~~e~~~~~~~~~~~g~~~~ 74 (246)
.+||.+..++..-.+ ..+.-++.+.+.++++++|+++.-.- ...+.+.+.+.+++.++|++
T Consensus 287 ~lAd~Y~~~~~~~~~pn~e~r~k~i~~mvkE~~vDGvv~~~l~fC~p~~~e~~~lk~~~kE~~iPvi 353 (379)
T COG1775 287 ALADQYFKIPCACYSPNDEFRVKYISRMVKEYNVDGVVLYTLRFCKPYSVEYPELKRRLKEEGIPVI 353 (379)
T ss_pred HHHHHHhccccccCCccHHHHHHHHHHHHHHcCCCeEeehhhhccCccccccHHHHHHHHhcCCcEE
Confidence 466666666532222 22335688999999999999875421 12245567777777777776
No 331
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=32.73 E-value=1.7e+02 Score=20.29 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccC--CCCHHHHHHHHHcCCeEe
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFL--SENASFVSRLKEEGVVFI 74 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~--~e~~~~~~~~~~~g~~~~ 74 (246)
.++.+.+..+.....+++++.+.|.. ...+.+.+.|.+.|+.+-
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE 83 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVE 83 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEE
Confidence 46778877776654599999998742 233577888888887654
No 332
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=32.73 E-value=1.2e+02 Score=19.84 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeC
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIG 75 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g 75 (246)
..+.+++..+++++++.+. --......|.+.|+.++-
T Consensus 43 ~~~~~~l~~~~v~~li~~~----iG~~~~~~L~~~gI~v~~ 79 (94)
T PF02579_consen 43 DKIAKFLAEEGVDVLICGG----IGEGAFRALKEAGIKVYQ 79 (94)
T ss_dssp THHHHHHHHTTESEEEESC----SCHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHcCCCEEEEeC----CCHHHHHHHHHCCCEEEE
Confidence 4677777778999888663 224556788888888774
No 333
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=32.67 E-value=2.1e+02 Score=24.87 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH--HHhcCHHHHHHHHHHh-----CCCCCCCC
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI--RGMGDKLESKKLAKEA-----GVNIIPGF 105 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~--~~~~dK~~~~~~l~~~-----gip~p~~~ 105 (246)
+.+.+..++-+.+--+.+ + |++.....+..+..+.++|++..+++++ +.+-||....++.++- .|-+|-..
T Consensus 122 nR~~iq~lAL~~~~AVLv-T-GGF~~s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~ 199 (432)
T COG4109 122 NREDIQLLALENGNAVLV-T-GGFDVSDEVIKLANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLED 199 (432)
T ss_pred cHHHHHHHHHhcCCeEEE-e-CCCCccHHHHHhhcccCCceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhcccccc
Confidence 345555555555544443 3 4445566788889999999998888775 5667888877776642 23333221
Q ss_pred c---cccCCHHHHHHHHHHh---CCcEE
Q psy10619 106 N---GIIRDADHCVEIARDI---GYPVM 127 (246)
Q Consensus 106 ~---~~~~~~~~~~~~~~~~---~~P~v 127 (246)
+ ..-.+.+++.+..++. .||++
T Consensus 200 ~~yL~~~d~v~d~~~l~~kt~~sRfPVv 227 (432)
T COG4109 200 TSYLRETDTVEDWLDLVEKTGHSRFPVV 227 (432)
T ss_pred ceeccccccHHHHHHHHHHcCCCcccee
Confidence 1 1223455555555544 48875
No 334
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=32.63 E-value=58 Score=22.72 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCEEcccccc-----CCCCHHHHHHHHHcCCeEe
Q psy10619 35 DKIIDAIRQTRADAVHPGYGF-----LSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~-----~~e~~~~~~~~~~~g~~~~ 74 (246)
..+.+.+++..+|+|+..... ......+++..-+.|+|++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 567777777788877765321 1111234455555666665
No 335
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.39 E-value=95 Score=22.22 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=33.2
Q ss_pred CChhhhccceeEEcCCCCcC-------------CCCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeC
Q psy10619 9 FQRHVKLADEAVCIGPPVAA-------------QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIG 75 (246)
Q Consensus 9 ~~~~~~~ad~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g 75 (246)
=++|+--|..|.++....+. ...-.--.+.+++.++++|+++..- ++ ......|++.|+.++-
T Consensus 16 vs~hFgrap~F~Ivd~e~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~~~--iG--~~a~~~l~~~GIkv~~ 91 (121)
T COG1433 16 VSPHFGRAPYFTIVDVEDGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVDVVIASN--IG--PNAYNALKAAGIKVYV 91 (121)
T ss_pred ccCCccCCceEEEEEecCCcEEEEEEeecccccccCcchHHHHHHHHHcCCCEEEECc--cC--HHHHHHHHHcCcEEEe
Confidence 35666667777666533222 0111112467777788888777552 11 2234556666666653
No 336
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=32.39 E-value=3e+02 Score=24.39 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
|...+.+.++.+..+.++.+..- ...-...+....++.|+. ..+..... -..+++.++.+||..|..+.+...
T Consensus 58 ~V~~Dvl~R~lr~~G~~V~fV~n-itD~dDKIi~~A~~~g~t----~~ela~~y--~~~f~~d~~~Lni~~~d~~~RaTe 130 (411)
T TIGR03447 58 YLTFDLVNRVWRDAGHRVHYVQN-VTDVDDPLFERAERDGVD----WRELGTSQ--IDLFREDMEALRVLPPRDYIGAVE 130 (411)
T ss_pred HHHHHHHHHHHHhcCCceEEeeC-CCchhHHHHHHHHHcCCC----HHHHHHHH--HHHHHHHHHHcCCCCCCcccCCCC
Confidence 56678889999999999887552 211223555666777763 33333332 234678899999876654444556
Q ss_pred CHHHHHHHHHHh
Q psy10619 111 DADHCVEIARDI 122 (246)
Q Consensus 111 ~~~~~~~~~~~~ 122 (246)
..++..++.+.+
T Consensus 131 ~i~~ii~~i~~L 142 (411)
T TIGR03447 131 SIDEVIEMVEKL 142 (411)
T ss_pred CHHHHHHHHHHH
Confidence 677777776655
No 337
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=32.35 E-value=1.7e+02 Score=20.07 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII 102 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p 102 (246)
.-.+.+.+.++++++++-+... ....+........+-+++|... ..+...++.+...|+|+.
T Consensus 15 ~la~km~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~PQv~-----~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 15 LLANALNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILAPQMA-----SYYDELKKDTDRLGIKLV 76 (99)
T ss_pred HHHHHHHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEcChHH-----HHHHHHHHHhhhcCCCEE
Confidence 3467889999999999765443 1123334455555666655422 235567788888888873
No 338
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=32.29 E-value=24 Score=30.92 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCH--HHHHHHHHHhC-CcEEEEeccCCCCceeEEe
Q psy10619 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA--DHCVEIARDIG-YPVMIKASAGGGGKGMRIA 142 (246)
Q Consensus 66 ~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~--~~~~~~~~~~~-~P~vvKp~~g~g~~gv~~v 142 (246)
+...++.++-|... .+++||..+.-+-+.+. ..|- . +-+.. +...+....++ ...|.||..|.-|.+|.++
T Consensus 253 l~~~~~~~ieP~wk--~llsnKalLalLW~l~p-~hp~-L--Lpay~~~d~~~~~~~~~~~~~yV~KPi~gREG~nV~i~ 326 (397)
T PHA02117 253 ILVSQTRFIEPAWK--MMLSNKGLLALLYERYP-DCPW-L--VPAYVEDDFDRENLFTLENPKYVSKPLLSREGNNIHIF 326 (397)
T ss_pred hhhCCcEEechhHH--hHhccHHHHHHHHHhcC-CCcc-c--ccccccccccccchhccccCCEEeccCCCcCCCCEEEE
Confidence 33455666644333 45689998777665432 1221 1 11111 10000000122 2489999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC
Q psy10619 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176 (246)
Q Consensus 143 ~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~ 176 (246)
.+...+. . ....+++.+++.|+|++-
T Consensus 327 ~~g~~~~----~----~~g~y~~~~~IyQ~~~~L 352 (397)
T PHA02117 327 EYGGESE----D----TDGNYAEEPRVVQQLIEW 352 (397)
T ss_pred ECCeEEe----c----cCCCCCCCCeEEEEccCC
Confidence 6533221 1 112355678999999863
No 339
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=31.71 E-value=62 Score=23.59 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCe-----EeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV-----FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN 106 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~-----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~ 106 (246)
.....+++.+++.++..++.+.. ....+...++..|+. +++.. +.-..-.+....+..++++|++.-...
T Consensus 80 ~~~~~~L~~l~~~~~~~~i~Sn~---~~~~~~~~l~~~~~~~~f~~i~~~~-~~~~~Kp~~~~~~~~~~~~~~~p~~~~- 154 (176)
T PF13419_consen 80 PGVRELLERLKAKGIPLVIVSNG---SRERIERVLERLGLDDYFDEIISSD-DVGSRKPDPDAYRRALEKLGIPPEEIL- 154 (176)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESS---EHHHHHHHHHHTTHGGGCSEEEEGG-GSSSSTTSHHHHHHHHHHHTSSGGGEE-
T ss_pred hhhhhhhhhcccccceeEEeecC---Ccccccccccccccccccccccccc-hhhhhhhHHHHHHHHHHHcCCCcceEE-
Confidence 35566777777777887765532 112344556666653 22111 111122345667788888888554322
Q ss_pred cccCCHHHHHHHHHHhCCcEE
Q psy10619 107 GIIRDADHCVEIARDIGYPVM 127 (246)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~P~v 127 (246)
.+-++..+ .+.+...|.+.|
T Consensus 155 ~vgD~~~d-~~~A~~~G~~~i 174 (176)
T PF13419_consen 155 FVGDSPSD-VEAAKEAGIKTI 174 (176)
T ss_dssp EEESSHHH-HHHHHHTTSEEE
T ss_pred EEeCCHHH-HHHHHHcCCeEE
Confidence 12234433 345566776643
No 340
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.65 E-value=2.9e+02 Score=22.70 Aligned_cols=111 Identities=11% Similarity=0.183 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCEEcccc--------ccC--CCC--HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCC--
Q psy10619 36 KIIDAIRQTRADAVHPGY--------GFL--SEN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNI-- 101 (246)
Q Consensus 36 ~l~~~~~~~~~d~v~~~~--------~~~--~e~--~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~-- 101 (246)
...+.+++.++.++..+. ++. .+. ..+.+.+++.|++++... .|.... +++.++ ++.
T Consensus 45 ~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~-------~d~~~~-~~l~~~-vd~~k 115 (266)
T PRK13398 45 KVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV-------MDTRDV-EEVADY-ADMLQ 115 (266)
T ss_pred HHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEee-------CChhhH-HHHHHh-CCEEE
Confidence 344455567788776551 111 111 156777888999887332 222222 223333 322
Q ss_pred CCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCc-eEEEe
Q psy10619 102 IPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR-ILVEK 172 (246)
Q Consensus 102 p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~-~lve~ 172 (246)
..+ +.+.+.+ +...+.+.+.|+++|--.. -+.+|+..+.+.+.. .++.+ +|++.
T Consensus 116 Iga--~~~~n~~-LL~~~a~~gkPV~lk~G~~---------~s~~e~~~A~e~i~~-----~Gn~~i~L~~r 170 (266)
T PRK13398 116 IGS--RNMQNFE-LLKEVGKTKKPILLKRGMS---------ATLEEWLYAAEYIMS-----EGNENVVLCER 170 (266)
T ss_pred ECc--ccccCHH-HHHHHhcCCCcEEEeCCCC---------CCHHHHHHHHHHHHh-----cCCCeEEEEEC
Confidence 222 1345544 4455578899999985432 256788777766543 23444 45555
No 341
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=31.06 E-value=2.4e+02 Score=21.54 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCe-----EeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV-----FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~-----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
+.....+++.+++.++..++.+.. ....+...+...|+. +++.. +....--++....+.++++|+..-...
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i~Sn~---~~~~~~~~l~~~~l~~~f~~i~~~~-~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAIATGK---SGPRARSLLEALGLLPLFDHVIGSD-EVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHHHcCChhheeeEEecC-cCCCCCCChHHHHHHHHHcCCChhheE
Confidence 345677788888878777665531 122334455666652 11111 111111255667888888998744432
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEEeccCCCCc------e-eEEeCCHHHHHHH
Q psy10619 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGK------G-MRIANNDQEAIEG 151 (246)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~------g-v~~v~~~~el~~~ 151 (246)
.+.+...=...++..|.+++.= .+|.++. + -.++++..++...
T Consensus 153 --~igD~~~Di~aA~~~Gi~~i~~-~~g~~~~~~l~~~~~~~~~~~~~~l~~~ 202 (205)
T TIGR01454 153 --MVGDAVTDLASARAAGTATVAA-LWGEGDAGELLAARPDFLLRKPQSLLAL 202 (205)
T ss_pred --EEcCCHHHHHHHHHcCCeEEEE-EecCCChhhhhhcCCCeeeCCHHHHHHH
Confidence 3443332334567788885532 2333221 1 1346777776544
No 342
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=30.74 E-value=3.9e+02 Score=25.26 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCEEcccccc--CCCCHHHHHHHHHcCCeEe--CCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCH
Q psy10619 37 IIDAIRQTRADAVHPGYGF--LSENASFVSRLKEEGVVFI--GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA 112 (246)
Q Consensus 37 l~~~~~~~~~d~v~~~~~~--~~e~~~~~~~~~~~g~~~~--g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~ 112 (246)
..+++.+.++|+|+...+. +..+-.+.-.+.+.|+|++ -+-.+.++...-+...+++-+.+|+|+.++....-...
T Consensus 73 ar~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 73 ARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred HHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence 3567888999999876532 1111123333457787765 25556666667788888889999999988542222344
Q ss_pred HHHHHHH
Q psy10619 113 DHCVEIA 119 (246)
Q Consensus 113 ~~~~~~~ 119 (246)
+++.+..
T Consensus 153 ~~l~~~i 159 (653)
T COG0370 153 EELKRAI 159 (653)
T ss_pred HHHHHHH
Confidence 5555443
No 343
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=30.58 E-value=1.2e+02 Score=28.48 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
+.....++|++.|+++++++ ..+.+.+++.++.+.+
T Consensus 225 t~~e~l~~L~~~GF~v~~~~-~~~~~~~ei~~~~~~~ 260 (652)
T TIGR00575 225 TQYEALAWLKKWGFPVSPHI-RLCDSIEEVLEYYREI 260 (652)
T ss_pred CHHHHHHHHHHCCCCCCCCe-EeeCCHHHHHHHHHHH
Confidence 44556778888999988764 3567778777765543
No 344
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=30.36 E-value=1.2e+02 Score=20.24 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=38.2
Q ss_pred CcCCCCC-CChhhhccceeEEcCCCCcC--------CCC-----CCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHH
Q psy10619 2 LFPDPCV-FQRHVKLADEAVCIGPPVAA--------QSY-----INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLK 67 (246)
Q Consensus 2 v~~d~~~-~~~~~~~ad~~~~~~~~~~~--------~~~-----~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~ 67 (246)
|.++.+. -+.|+-.|..++++...... ... -....+.++....++|+++..- +++ .....|+
T Consensus 4 i~~~~~~~v~~hFg~A~~f~I~d~~~~~~~~~e~~~n~~~~~~~~~~~~~~~~l~~~~v~~vi~~~--iG~--~a~~~l~ 79 (102)
T cd00562 4 VASSDGGRVDQHFGRAPEFLIYEVEPGGIKLVEVRENPAACGGGGEGKLAARLLALEGCDAVLVGG--IGG--PAAAKLE 79 (102)
T ss_pred EEcCCCCEehhhcCCCCeEEEEEEcCCcEEEEEEEeccccccCCccchHHHHHHHHCCCcEEEEcc--cCc--cHHHHHH
Confidence 4444443 46677677777655422221 000 1124556677778888888652 222 2356677
Q ss_pred HcCCeEe
Q psy10619 68 EEGVVFI 74 (246)
Q Consensus 68 ~~g~~~~ 74 (246)
+.|+.++
T Consensus 80 ~~gI~v~ 86 (102)
T cd00562 80 AAGIKPI 86 (102)
T ss_pred HcCCEEE
Confidence 7888776
No 345
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=30.19 E-value=1.3e+02 Score=21.11 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCEEccccc--c-CC-C--CHHHHHHHHHcCCeEe
Q psy10619 35 DKIIDAIRQTRADAVHPGYG--F-LS-E--NASFVSRLKEEGVVFI 74 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~--~-~~-e--~~~~~~~~~~~g~~~~ 74 (246)
+.+.+.++..++|+|+.+.. . .+ + ...+.+.+-+.++|++
T Consensus 60 ~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 60 QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLA 105 (115)
T ss_pred hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEE
Confidence 45667777777777765542 1 11 1 1144555556666665
No 346
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=30.06 E-value=62 Score=22.09 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHH
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR 82 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~ 82 (246)
..++..+-..++.+++.+- ...-...+.+.+++.|++++..+..+..
T Consensus 51 ~di~~~a~~~~i~~iIltg-~~~~~~~v~~la~~~~i~vi~t~~dtf~ 97 (105)
T PF07085_consen 51 EDIQLAAIEAGIACIILTG-GLEPSEEVLELAKELGIPVISTPYDTFE 97 (105)
T ss_dssp HHHHHHHCCTTECEEEEET-T----HHHHHHHHHHT-EEEE-SS-HHH
T ss_pred HHHHHHHHHhCCCEEEEeC-CCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 4444444455555555442 2223345566666666766655544443
No 347
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.96 E-value=51 Score=23.89 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
.|.|.+.+++.|++.+++..+... +-++...+. +|-+.+.....-+| .+..++++|+.+..
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~---PvNg~wydy--------tG~~~~~r~~~y~k--I~~~~~~~gf~v~D 94 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQ---PVNGKWYDY--------TGLSKEMRQEYYKK--IKYQLKSQGFNVAD 94 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-------HHHHHH--------TT--HHHHHHHHHH--HHHHHHTTT--EEE
T ss_pred cHHHHHHHHHHHHHcCCceEEEec---CCcHHHHHH--------hCCCHHHHHHHHHH--HHHHHHHCCCEEEe
Confidence 477889999999999999877553 233332222 23344555555555 56778888886654
No 348
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=29.76 E-value=40 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.7
Q ss_pred eeeecCCCeeeCCCeEEEEc
Q psy10619 225 SVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 225 ~l~~~~G~~v~~g~~~~v~e 244 (246)
++.++.||.|++||.+...-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 78999999999999998653
No 349
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=29.46 E-value=52 Score=30.88 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.4
Q ss_pred ceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 221 GLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 221 g~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
|..-+..++.||.|++||+|+...
T Consensus 579 G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 579 GKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred CCCceEEecCCCEEcCCCEEEEEc
Confidence 344455689999999999998653
No 350
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=29.44 E-value=2.4e+02 Score=20.93 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHhCCcE
Q psy10619 111 DADHCVEIARDIGYPV 126 (246)
Q Consensus 111 ~~~~~~~~~~~~~~P~ 126 (246)
+..++.+.+...|+|+
T Consensus 125 ~K~ei~~~~~~~g~~~ 140 (169)
T cd01995 125 SKAEIVRLGGELGVPL 140 (169)
T ss_pred CHHHHHHHHhHcCCCh
Confidence 4445555555555543
No 351
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A ....
Probab=29.09 E-value=1.3e+02 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHH
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD 121 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~ 121 (246)
+.....++|++.|+++++.. ..+.+.+++.++.+.
T Consensus 235 t~~e~l~~L~~~GF~v~~~~-~~~~~~~~v~~~~~~ 269 (315)
T PF01653_consen 235 TQSERLQFLKEWGFPVNPYI-RFCKSIEEVEEYIEE 269 (315)
T ss_dssp BHHHHHHHHHHTT--B-TTE-EEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcce-EecCCHHHHHHHHHH
Confidence 45667778888888877643 356777777665543
No 352
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=29.09 E-value=1.1e+02 Score=21.19 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=9.4
Q ss_pred cCHHHHHHHHHHhCCCC
Q psy10619 85 GDKLESKKLAKEAGVNI 101 (246)
Q Consensus 85 ~dK~~~~~~l~~~gip~ 101 (246)
.|-..+|+...+++||.
T Consensus 86 ~dg~~iRR~A~~~~Ip~ 102 (112)
T cd00532 86 EDGTALLRLARLYKIPV 102 (112)
T ss_pred CChHHHHHHHHHcCCCE
Confidence 34455566666666554
No 353
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=28.88 E-value=37 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=15.2
Q ss_pred eeeecCCCeeeCCCeEE
Q psy10619 225 SVNCKVGDQIMEGQELC 241 (246)
Q Consensus 225 ~l~~~~G~~v~~g~~~~ 241 (246)
++.++.||.|+.||+++
T Consensus 186 ~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 186 EPLVSVGQKVVAGETVL 202 (206)
T ss_pred cccccCCCEEEcccEEE
Confidence 78899999999999875
No 354
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.63 E-value=3.5e+02 Score=22.65 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHhCCCEEccccccCCCCH--------HHHHHHH-H--cCCeEe-CCCHHHHHHhcCHHHHHHHHHH
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGYGFLSENA--------SFVSRLK-E--EGVVFI-GPTAECIRGMGDKLESKKLAKE 96 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~--------~~~~~~~-~--~g~~~~-g~~~~~~~~~~dK~~~~~~l~~ 96 (246)
.++....++++...+.++|.+++. |..+|.. .+.+... . ..+|++ |.+.... .+=....+..++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~-GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t---~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVL-GTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNST---AEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-CCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcH---HHHHHHHHHHHh
Confidence 334444566667778899988755 3223332 2222221 1 224444 3222211 112234555677
Q ss_pred hCCC----CCCCCccccCCHHHHHHHH----HHhCCcEEEE
Q psy10619 97 AGVN----IIPGFNGIIRDADHCVEIA----RDIGYPVMIK 129 (246)
Q Consensus 97 ~gip----~p~~~~~~~~~~~~~~~~~----~~~~~P~vvK 129 (246)
.|+. +||+|. -.+.+.+.++. +..+.|+++=
T Consensus 98 ~Gad~il~v~PyY~--k~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 98 LGADGILVVPPYYN--KPSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred cCCCEEEEeCCCCc--CCChHHHHHHHHHHHHhcCCCEEEE
Confidence 7754 466552 34455555443 4457887773
No 355
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=28.45 E-value=55 Score=30.49 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred ccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 217 APMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 217 sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+.|..=+..++.||.|++||+|+...
T Consensus 539 v~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 539 VELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred hccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 3444555677799999999999998753
No 356
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=28.22 E-value=1.3e+02 Score=24.37 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=12.3
Q ss_pred eCCHHHHHHHHHHHHHHHHh
Q psy10619 142 ANNDQEAIEGFKLSSQEAAA 161 (246)
Q Consensus 142 v~~~~el~~~~~~~~~~~~~ 161 (246)
..|+-....+|+......+.
T Consensus 210 A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 210 AKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp SSSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 35677777777766554443
No 357
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.14 E-value=72 Score=26.27 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.4
Q ss_pred cceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
+++-....++-|+.|++||+|+.+|
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5777788999999999999999986
No 358
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=27.78 E-value=53 Score=30.69 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=19.9
Q ss_pred ccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 219 MPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 219 ~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
+.|.-=+..++.||.|++||+|+...
T Consensus 557 L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 557 LDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred cCCCCceEEecCCCEEcCCCEEEEEc
Confidence 33444567788999999999998754
No 359
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=27.37 E-value=4.1e+02 Score=23.00 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCC--CCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCce
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNI--IPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKG 138 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~g 138 (246)
.+.+.+++.|++++.... |.... +++.++ ++. .++. .+.+. ++...+.+.|-|+++|--..
T Consensus 173 ~L~~~~~~~Gl~~~t~v~-------d~~~~-~~l~~~-vd~lkI~s~--~~~n~-~LL~~~a~~gkPVilk~G~~----- 235 (360)
T PRK12595 173 ILKQVADEYGLAVISEIV-------NPADV-EVALDY-VDVIQIGAR--NMQNF-ELLKAAGRVNKPVLLKRGLS----- 235 (360)
T ss_pred HHHHHHHHcCCCEEEeeC-------CHHHH-HHHHHh-CCeEEECcc--cccCH-HHHHHHHccCCcEEEeCCCC-----
Confidence 567778899998884332 22222 223333 333 2222 45554 45666777899999985332
Q ss_pred eEEeCCHHHHHHHHHHHHHHHHhhcCCCceEE-Eeccc
Q psy10619 139 MRIANNDQEAIEGFKLSSQEAAASFGDDRILV-EKFIK 175 (246)
Q Consensus 139 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lv-e~~i~ 175 (246)
.+.+|+..+++.+.. .++.++++ |+-+.
T Consensus 236 ----~t~~e~~~Ave~i~~-----~Gn~~i~L~erg~s 264 (360)
T PRK12595 236 ----ATIEEFIYAAEYIMS-----QGNGQIILCERGIR 264 (360)
T ss_pred ----CCHHHHHHHHHHHHH-----CCCCCEEEECCccC
Confidence 377899888888764 34555554 44554
No 360
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=27.33 E-value=1.7e+02 Score=21.43 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCCEEccc
Q psy10619 35 DKIIDAIRQTRADAVHPG 52 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~ 52 (246)
..+.+.+++..+|+|+..
T Consensus 65 ~~i~~~I~~g~i~lVInt 82 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFF 82 (142)
T ss_pred hhHHHHHHcCceeEEEEe
Confidence 345555566666666544
No 361
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=27.30 E-value=3.6e+02 Score=22.31 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCC--------HHHHHHH-HH--cCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCC
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSEN--------ASFVSRL-KE--EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNI 101 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~--------~~~~~~~-~~--~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~ 101 (246)
..+.+++.+.+.+++.+++. |..+|. ..+.+.. +. ..+|++..- .. ...+=..+.+.++++|...
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~-GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv-~~--~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAA-GGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA-GY--GTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec-CC--CHHHHHHHHHHHHHhCCCE
Confidence 34455666667899998755 222222 1232222 22 236655221 11 1222334556677777654
Q ss_pred ----CCCCccccCCHHHHHHHHHH----hCCcEEEE
Q psy10619 102 ----IPGFNGIIRDADHCVEIARD----IGYPVMIK 129 (246)
Q Consensus 102 ----p~~~~~~~~~~~~~~~~~~~----~~~P~vvK 129 (246)
||++. ..+.+++.++.+. .+.|+++=
T Consensus 98 v~~~pP~y~--~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 98 ILLLPPYLT--EAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred EEECCCCCC--CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 67653 3466777666543 46787774
No 362
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=27.18 E-value=1.4e+02 Score=21.77 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHH-----HHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECI-----RGMGDKLESKKLAKEAGVNIIPGFN 106 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~-----~~~~dK~~~~~~l~~~gip~p~~~~ 106 (246)
.-.+.+.+-+++.+.|+.|.+.-. +- +.-...|..++|..+..+ ....|-.+++.+++++.+-+.++=
T Consensus 9 dWRe~I~~ga~~~~L~v~F~~Pvt---dH---~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFG- 81 (141)
T PF11071_consen 9 DWREEIKEGAKAAGLPVEFTSPVT---DH---EASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFG- 81 (141)
T ss_pred hHHHHHHHHHHHcCCCeEEecCCC---Cc---hhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEec-
Confidence 345889999999999988866421 11 111122333333333222 122366778999999999888731
Q ss_pred cccCCHHHHHHH-----HHHhCCcEEE-Eecc------CCCCceeEEeCCHHHHHHHHHH
Q psy10619 107 GIIRDADHCVEI-----ARDIGYPVMI-KASA------GGGGKGMRIANNDQEAIEGFKL 154 (246)
Q Consensus 107 ~~~~~~~~~~~~-----~~~~~~P~vv-Kp~~------g~g~~gv~~v~~~~el~~~~~~ 154 (246)
....+...+ +..+|-|+|+ .|.. .-...-...+.++++..+.++.
T Consensus 82 ---ekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Y 138 (141)
T PF11071_consen 82 ---EKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRY 138 (141)
T ss_pred ---hHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHH
Confidence 233333322 3467888654 3322 1133344456666666665544
No 363
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=27.08 E-value=3.4e+02 Score=21.97 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCe---Ee----C----CCHHHHHHhcCHHHHHHHHHHhCCCC
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV---FI----G----PTAECIRGMGDKLESKKLAKEAGVNI 101 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~---~~----g----~~~~~~~~~~dK~~~~~~l~~~gip~ 101 (246)
|-+.+.+.+++++..+++......+....+.+.++..+.+ ++ | -+++.+.. ..+.|+......
T Consensus 51 Dde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~------~~~~L~~~~~~~ 124 (247)
T COG1212 51 DDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRA------VAENLENSNADM 124 (247)
T ss_pred CCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHH------HHHHHHhCCcce
Confidence 5588899999999998886654434444677777777653 11 1 12222222 334455443333
Q ss_pred CCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEe
Q psy10619 102 IPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142 (246)
Q Consensus 102 p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v 142 (246)
.-.. ..+.+.+++. -|=+||-+....++-.++-
T Consensus 125 aTl~-~~i~~~ee~~-------nPN~VKvV~d~~g~ALYFS 157 (247)
T COG1212 125 ATLA-VKITDEEEAF-------NPNVVKVVLDKEGYALYFS 157 (247)
T ss_pred eeee-eecCCHHHhc-------CCCcEEEEEcCCCcEEEEE
Confidence 2211 1344444432 4888999988877777653
No 364
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=26.96 E-value=26 Score=24.68 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=10.1
Q ss_pred eeeecCCCeeeCCCeEE
Q psy10619 225 SVNCKVGDQIMEGQELC 241 (246)
Q Consensus 225 ~l~~~~G~~v~~g~~~~ 241 (246)
.+.|+.||.|+.||+|.
T Consensus 45 eLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 45 ELIVSEGQSVKADQPLT 61 (118)
T ss_dssp -BS--TT-EETTT-BSB
T ss_pred eEEEcCCCEEecCCccc
Confidence 35689999999999874
No 365
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.93 E-value=92 Score=27.63 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHhCCCEEccc
Q psy10619 33 NVDKIIDAIRQTRADAVHPG 52 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~ 52 (246)
-.+.+.+.+++.++|+|+-.
T Consensus 349 R~~~l~~li~e~~vDGVI~~ 368 (430)
T TIGR03191 349 KSEMMLNIARDWNVDGCMLH 368 (430)
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 46788889999999998744
No 366
>PRK15447 putative protease; Provisional
Probab=26.82 E-value=2.8e+02 Score=23.16 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHhCCCEEccccccCC--------CCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCC
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGYGFLS--------ENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVN 100 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~~~~~--------e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip 100 (246)
..--+.+.+...+.+.++|+|..+...++ +.....+.+.+.|.+++-..+..+..-.+.....++++. +
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~-- 88 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-G-- 88 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-C--
Confidence 33456788888888889999987743211 112445666778877764333332211122234444443 2
Q ss_pred CCCCCccccCCHHHHHHHHHHhCCcEEEEe
Q psy10619 101 IIPGFNGIIRDADHCVEIARDIGYPVMIKA 130 (246)
Q Consensus 101 ~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp 130 (246)
+..+ .+.+...+. ++++.++|+..=.
T Consensus 89 -~~~v--~v~d~g~l~-~~~e~~~~l~~d~ 114 (301)
T PRK15447 89 -EFLV--EANDLGAVR-LLAERGLPFVAGP 114 (301)
T ss_pred -CCEE--EEeCHHHHH-HHHhcCCCEEEec
Confidence 2222 366777654 4455677765543
No 367
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=26.65 E-value=42 Score=29.80 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.1
Q ss_pred cceeeeeeecCCCeeeCCCeEEEE
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
.|.--+..|+.||.|++||.|..-
T Consensus 39 ~g~~~~~~V~~Gd~V~~Gq~i~~~ 62 (435)
T TIGR01945 39 IGAPAEPIVKVGDKVLKGQKIAKA 62 (435)
T ss_pred CCCCCceeeCCCCEECCCCEeccC
Confidence 355568999999999999999764
No 368
>smart00532 LIGANc Ligase N family.
Probab=26.39 E-value=1.8e+02 Score=26.02 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
+.....++|++.|++++++. ..+.+.+++.++.+.+
T Consensus 232 t~~e~l~~L~~~GF~v~~~~-~~~~~~~ei~~~~~~~ 267 (441)
T smart00532 232 TQSEALKWLKELGFPVSPHT-RLCKNADEVIEYYEEW 267 (441)
T ss_pred CHHHHHHHHHHCCCCCCCCe-EeeCCHHHHHHHHHHH
Confidence 35566777888999987754 3567777777666543
No 369
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=26.37 E-value=1.3e+02 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
+.....++|++.|++++++. ..+.+.+++.++.+.+
T Consensus 237 t~~e~l~~L~~~GF~v~~~~-~~~~~~~ei~~~~~~~ 272 (665)
T PRK07956 237 SQSEALEFLKAWGFPVNPYR-KLCTSIEEVLAFYEEI 272 (665)
T ss_pred CHHHHHHHHHHCCCCcCCce-EeeCCHHHHHHHHHHH
Confidence 45556677888888887753 3567777776665433
No 370
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=26.10 E-value=3.5e+02 Score=22.11 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHhCCCEEccccc--c--CCCCHHHHHHHHHcCCeEe
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGYG--F--LSENASFVSRLKEEGVVFI 74 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~~--~--~~e~~~~~~~~~~~g~~~~ 74 (246)
..|.+.+.+.+.++..+.++|....- . ......+.+.+...++.++
T Consensus 17 gky~s~~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~~~~~l 66 (248)
T cd04728 17 GKYPSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTLL 66 (248)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccccCCEEC
Confidence 35777888888888888887765431 1 1122345566666666665
No 371
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=26.10 E-value=1.9e+02 Score=20.98 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHhCCCEEcccc
Q psy10619 32 INVDKIIDAIRQTRADAVHPGY 53 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~ 53 (246)
...+.+.+++++++++.++.|.
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGl 59 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGL 59 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEE
T ss_pred hHHHHHHHHHHHhCCCEEEEeC
Confidence 5679999999999999999885
No 372
>PRK02929 L-arabinose isomerase; Provisional
Probab=25.70 E-value=1.1e+02 Score=27.68 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHhC----CCEEccccccCCCCHHHHHHHHHcCCeEeCCCH-------------HHHHHh---cCHHHHH
Q psy10619 32 INVDKIIDAIRQTR----ADAVHPGYGFLSENASFVSRLKEEGVVFIGPTA-------------ECIRGM---GDKLESK 91 (246)
Q Consensus 32 ~~~~~l~~~~~~~~----~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~-------------~~~~~~---~dK~~~~ 91 (246)
.+.+.+.+.+++.+ +|+|+.++..++....+...++..++|++--.. ..+.++ .-+..+-
T Consensus 55 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~~~~l~~PvL~~~~Q~~~e~p~~~id~d~m~lnqs~~G~~e~~ 134 (499)
T PRK02929 55 TTPDEITAVCREANYDDNCAGVITWMHTFSPAKMWIRGLSALQKPLLHLHTQFNAEIPWDTIDMDFMNLNQSAHGDREFG 134 (499)
T ss_pred CCHHHHHHHHHHccccCCCcEEEEccCCCchHHHHHHHHHHcCCCEEEEecCCCccCCCCCCCcchhhhhhcccChHHHH
Confidence 46788888888887 999998876666555667778888888873221 122222 2455667
Q ss_pred HHHHHhCCCC
Q psy10619 92 KLAKEAGVNI 101 (246)
Q Consensus 92 ~~l~~~gip~ 101 (246)
..+.+.|+|.
T Consensus 135 ~il~R~gi~~ 144 (499)
T PRK02929 135 FIGARLRKQR 144 (499)
T ss_pred HHHHHcCCCe
Confidence 7788999984
No 373
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=25.68 E-value=4.3e+02 Score=23.17 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
|...+.+.++.+..+.++.+..- ...-...+....++.|+. ..+..+.. -..+.+.++.+||-.|..+.+...
T Consensus 31 ~V~~Dvl~R~lr~~G~~V~~V~n-itD~ddKIi~~A~~~G~~----~~e~a~~~--~~~f~~d~~~Lni~~~~~~~raTe 103 (384)
T PRK12418 31 YLAFDLVNRVWRDAGHDVHYVQN-VTDVDDPLLERAARDGVD----WRDLAERE--IALFREDMEALRVLPPRDYVGAVE 103 (384)
T ss_pred HHHHHHHHHHHHHcCCceEEEEe-cCCcchHHHHHHHHcCCC----HHHHHHHH--HHHHHHHHHHhCCCCCCccccCCC
Confidence 56678889999999988887552 222223556666777763 22333322 233778899999864443333455
Q ss_pred CHHHHHHHHHHh
Q psy10619 111 DADHCVEIARDI 122 (246)
Q Consensus 111 ~~~~~~~~~~~~ 122 (246)
..++..++.+.+
T Consensus 104 ~i~~~~~~i~~L 115 (384)
T PRK12418 104 SIPEVVELVEKL 115 (384)
T ss_pred CHHHHHHHHHHH
Confidence 677777666654
No 374
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=25.66 E-value=3.7e+02 Score=21.85 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCEEccccccCCCC----HHHHHHHHHcCCeEe-CCCHHHHHHhcCHHHHHHHHH--HhCCCCCCCCcc
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSEN----ASFVSRLKEEGVVFI-GPTAECIRGMGDKLESKKLAK--EAGVNIIPGFNG 107 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~----~~~~~~~~~~g~~~~-g~~~~~~~~~~dK~~~~~~l~--~~gip~p~~~~~ 107 (246)
..+.+++...++|+|+...+.-.-+ ..+...++..|+..+ -.+ ..|....++.|. ..||-+|.
T Consensus 23 p~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp------~~~~~~i~r~LD~Ga~gIivP~---- 92 (249)
T TIGR03239 23 PITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPP------WNEPVIIKRLLDIGFYNFLIPF---- 92 (249)
T ss_pred cHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECC------CCCHHHHHHHhcCCCCEEEecC----
Confidence 5778888889999999875421111 133444556665322 111 134555555554 34565554
Q ss_pred ccCCHHHHHHHHHHhCCc
Q psy10619 108 IIRDADHCVEIARDIGYP 125 (246)
Q Consensus 108 ~~~~~~~~~~~~~~~~~P 125 (246)
+++.+++.++.+...||
T Consensus 93 -v~taeea~~~v~a~kyp 109 (249)
T TIGR03239 93 -VESAEEAERAVAATRYP 109 (249)
T ss_pred -cCCHHHHHHHHHHcCCC
Confidence 78999999999989998
No 375
>PRK15468 carboxysome structural protein EutS; Provisional
Probab=25.63 E-value=54 Score=22.85 Aligned_cols=17 Identities=6% Similarity=0.448 Sum_probs=13.8
Q ss_pred ceEEEecccCcceEEEEe
Q psy10619 167 RILVEKFIKNPRHIEIQG 184 (246)
Q Consensus 167 ~~lve~~i~~g~e~~v~v 184 (246)
.-++|||++ |+.+++.-
T Consensus 4 ~RiIQE~VP-GKQvTlAH 20 (111)
T PRK15468 4 ERIIQEFVP-GKQVTLAH 20 (111)
T ss_pred cceEEeecC-Cceeeeee
Confidence 358999999 88888763
No 376
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=25.60 E-value=4.6e+02 Score=23.57 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR 110 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~ 110 (246)
|...+.+.+..+..+.++.++. +...-...+.....+.|+ ++.+..... -..+++.++.+||..+....+...
T Consensus 43 ~v~~Dvl~R~lr~~G~~V~~v~-n~tD~ddkIi~~A~~~g~----~~~e~a~~~--~~~f~~dl~~LgI~~d~~~~raT~ 115 (465)
T TIGR00435 43 AIVFDVLRRYLRYLGYKVQYVQ-NITDIDDKIIKRARENGE----SVYEVSERF--IEAYFEDMKALNVLPPDLEPRATE 115 (465)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-eeCCccHHHHHHHHHcCC----CHHHHHHHH--HHHHHHHHHHhCCCCCcCCccccc
Confidence 6777888999999999987755 222233355555666776 233444333 334678899999987664322345
Q ss_pred CHHHHHHHHHHh
Q psy10619 111 DADHCVEIARDI 122 (246)
Q Consensus 111 ~~~~~~~~~~~~ 122 (246)
..++..++.+.+
T Consensus 116 hi~~i~~~i~~L 127 (465)
T TIGR00435 116 HIDEIIEFIEQL 127 (465)
T ss_pred cHHHHHHHHHHH
Confidence 555665655544
No 377
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=25.35 E-value=3.4e+02 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.116 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHHhCCCCCCCC
Q psy10619 85 GDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 85 ~dK~~~~~~l~~~gip~p~~~ 105 (246)
.......++...+|+|+|.-.
T Consensus 34 ~~E~~~~~La~~LgVpiPq~r 54 (238)
T cd05124 34 ASEYFLSKLAKILGLPIPQMR 54 (238)
T ss_pred HHHHHHHHHHHHhCCCCCcee
Confidence 456677888899999999943
No 378
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=25.34 E-value=45 Score=25.84 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=15.1
Q ss_pred eeeecCCCeeeCCCeEE
Q psy10619 225 SVNCKVGDQIMEGQELC 241 (246)
Q Consensus 225 ~l~~~~G~~v~~g~~~~ 241 (246)
++.++.||.|+.||+|+
T Consensus 166 ~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 166 QAQVKVGEKVTAGETVL 182 (189)
T ss_pred ccccCCCCEEEeceEEE
Confidence 67899999999999885
No 379
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=25.33 E-value=4e+02 Score=22.13 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCH--------HHHHHHH---HcCCeEe-CCCHHHHHHhcCHHHHHHHHHHhCC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENA--------SFVSRLK---EEGVVFI-GPTAECIRGMGDKLESKKLAKEAGV 99 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~--------~~~~~~~---~~g~~~~-g~~~~~~~~~~dK~~~~~~l~~~gi 99 (246)
.....+++.+.+.++|.+++. |..+|.. .+.+... ...++++ |.+. . ..+=..+.+..+++|.
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~-GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~---t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAA-GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-N---TSDAIEIARLAEKAGA 100 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEC-CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-c---HHHHHHHHHHHHHhCC
Confidence 334555666777899998854 2222221 2222221 1235554 2221 1 2333345566777775
Q ss_pred C----CCCCCccccCCHHHHHHHHH----HhCCcEEEE
Q psy10619 100 N----IIPGFNGIIRDADHCVEIAR----DIGYPVMIK 129 (246)
Q Consensus 100 p----~p~~~~~~~~~~~~~~~~~~----~~~~P~vvK 129 (246)
. +||+++ ..+.+++.++.+ ..+.|+++=
T Consensus 101 dav~~~pP~y~--~~s~~~i~~~f~~v~~a~~~pvilY 136 (296)
T TIGR03249 101 DGYLLLPPYLI--NGEQEGLYAHVEAVCESTDLGVIVY 136 (296)
T ss_pred CEEEECCCCCC--CCCHHHHHHHHHHHHhccCCCEEEE
Confidence 4 577653 346677766654 346788773
No 380
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.30 E-value=1.1e+02 Score=24.73 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCcee
Q psy10619 60 ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGM 139 (246)
Q Consensus 60 ~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv 139 (246)
..+.+.+++.|+.++.++. |.. .-++|.+.|+|.-+-.+..+++.. +.+.+++.|.|+|+ |.|+
T Consensus 59 ~~L~~~~~~~gi~f~stpf-------d~~-s~d~l~~~~~~~~KIaS~dl~n~~-lL~~~A~tgkPvIl-------STG~ 122 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPF-------DEE-SVDFLEELGVPAYKIASGDLTNLP-LLEYIAKTGKPVIL-------STGM 122 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE--------SHH-HHHHHHHHT-SEEEE-GGGTT-HH-HHHHHHTT-S-EEE-------E-TT
T ss_pred HHHHHHHHHcCCEEEECCC-------CHH-HHHHHHHcCCCEEEeccccccCHH-HHHHHHHhCCcEEE-------ECCC
Confidence 3667888899998885443 222 345678888776542233445544 55566678888887 2222
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 140 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
.+.+|++.+++.+.. .++.++.+...+.
T Consensus 123 ---stl~EI~~Av~~~~~-----~~~~~l~llHC~s 150 (241)
T PF03102_consen 123 ---STLEEIERAVEVLRE-----AGNEDLVLLHCVS 150 (241)
T ss_dssp -----HHHHHHHHHHHHH-----HCT--EEEEEE-S
T ss_pred ---CCHHHHHHHHHHHHh-----cCCCCEEEEecCC
Confidence 377888888887733 1356666666654
No 381
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.25 E-value=87 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=18.5
Q ss_pred HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 63 ~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
.+.+.+..-|++-.+..+. ...-....++++++.|+|+..
T Consensus 5 ~~~L~~A~rP~il~G~g~~-~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 5 ADLLSSAKRPVILAGRGAR-RSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp HHHHHH-SSEEEEE-HHHH-HTTCHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhCCCEEEEEcCCcC-hhhHHHHHHHHHHHHCCCEEe
Confidence 3344444444443332222 224455566666666666644
No 382
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=24.95 E-value=1.8e+02 Score=24.23 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEeCCCHHHH
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFIGPTAECI 81 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~g~~~~~~ 81 (246)
..+++-|.+.++..++...+.+++. ..+.+..++.|++++||+.--+
T Consensus 77 ~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~Gi 125 (286)
T TIGR01019 77 ADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPGI 125 (286)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCceE
Confidence 3444555566777665444333444 2566777788888888875444
No 383
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=24.88 E-value=4.3e+02 Score=23.67 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCcccc
Q psy10619 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGII 109 (246)
Q Consensus 30 ~~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 109 (246)
+|...+.+.+..+..+.++.++. +.......+....++.|+ +..+..... -..+++.++.+||..|..+.+..
T Consensus 44 ~~v~~Dvl~R~lr~~G~~V~~v~-~~tD~ddki~~~A~~~g~----~~~e~~~~~--~~~f~~~~~~Lgi~~~d~~~r~t 116 (463)
T PRK00260 44 SFVVFDVLRRYLRYLGYKVTYVR-NITDIDDKIIKRANEEGE----SIKELTERY--IAAFHEDMDALNVLPPDIEPRAT 116 (463)
T ss_pred hHHHHHHHHHHHHhcCCceEEee-cCCCCcHHHHHHHHHcCC----CHHHHHHHH--HHHHHHHHHHcCCCCCCcccccc
Confidence 36677888889998899988755 322233445555556665 222333332 22378889999996665443334
Q ss_pred CCHHHHHHHHHHh
Q psy10619 110 RDADHCVEIARDI 122 (246)
Q Consensus 110 ~~~~~~~~~~~~~ 122 (246)
...++..++.+.+
T Consensus 117 ~~~~~~~~~i~~L 129 (463)
T PRK00260 117 EHIPEIIELIERL 129 (463)
T ss_pred ccHHHHHHHHHHH
Confidence 4556666665543
No 384
>TIGR01986 glut_syn_euk glutathione synthetase, eukaryotic. This model represents the eukaryotic glutathione synthetase, which shows little resemblance to the analogous enzyme of Gram-negative bacteria (TIGR01380). In the Kinetoplastida, trypanothione replaces glutathione, but can be made from glutathione; a sequence from Leishmania is not included in the seed, is highly divergent, and therefore scores between the trusted and noise cutoffs.
Probab=24.71 E-value=1.4e+02 Score=26.84 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=28.7
Q ss_pred cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 125 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
-+|+||...+||..++ .+++...++.+-..- -..+++++.|.
T Consensus 361 ~~VLKPQrEGGGNNiy----g~dI~~~L~~l~~~e-----~~ayILMerI~ 402 (472)
T TIGR01986 361 KFVLKPQREGGGNNVY----GEDIPNFLKGLEEEE-----WDSYILMELIE 402 (472)
T ss_pred heEEcCcCcCcccccc----hHHHHHHHHhCCHHh-----hhheeeeeecc
Confidence 3899999999998885 366666666553321 14567777665
No 385
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.57 E-value=2.5e+02 Score=21.26 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEeC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFIG 75 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~g 75 (246)
.+++.+.+.+++-+-.+++.+.+..... ..+.+..++.|+|++.
T Consensus 15 ~~p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvt 60 (162)
T TIGR00315 15 VSPKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVA 60 (162)
T ss_pred cCHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEE
Confidence 4778889998888888888786543222 2455666677887773
No 386
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=24.49 E-value=47 Score=21.50 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=15.2
Q ss_pred HHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 82 RGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 82 ~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
....+.+...+++++.||++|.+.
T Consensus 41 ~~~~nE~~~~~lA~~~Gi~v~~~~ 64 (81)
T PF07805_consen 41 DLVENEYACMRLARAAGIPVPETR 64 (81)
T ss_dssp THHHHHHHHHHHHHHTT-----EE
T ss_pred chHHHHHHHHHHHHHcCCCcCceE
Confidence 345678899999999999999854
No 387
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=24.35 E-value=1.1e+02 Score=26.03 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC--CC--ccccCCHHHHHHHHHHhCCcEEEEeccCCCC
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP--GF--NGIIRDADHCVEIARDIGYPVMIKASAGGGG 136 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~--~~--~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~ 136 (246)
.+.+.|++.++.++-|......++.++.. +++.|+...- .. ...+++.....+++++.+.|+.
T Consensus 57 ~~l~~C~~~~Idv~~P~~~~~~l~~~r~~----F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp--------- 123 (329)
T PF15632_consen 57 WCLDFCKEHGIDVFVPGRNRELLAAHRDE----FEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVP--------- 123 (329)
T ss_pred HHHHHHHHhCCeEEEcCccHHHHHHHHHH----HHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCC---------
Confidence 56788899999999888777776655544 6667776532 10 1123444444555555444321
Q ss_pred ceeEEeCCHHHHHHHHHHHH
Q psy10619 137 KGMRIANNDQEAIEGFKLSS 156 (246)
Q Consensus 137 ~gv~~v~~~~el~~~~~~~~ 156 (246)
-..++++.++++.++..+.
T Consensus 124 -~~~~v~t~~el~~a~~~l~ 142 (329)
T PF15632_consen 124 -PYWRVRTADELKAAYEELR 142 (329)
T ss_pred -CEEEeCCHHHHHHHHHhcC
Confidence 1246899999999998754
No 388
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=24.32 E-value=61 Score=23.91 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeE
Q psy10619 33 NVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVF 73 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~ 73 (246)
+.+.+.+.++++++|-|+..... .+.. .+.+.|++.|+.+
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~-~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPW-SEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TT-S-HHHHHHHHHHHHTTT-EE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCc-cCHHHHHHHHHHHHhCCCEE
Confidence 56899999999999998866422 1222 5567777788765
No 389
>PLN02977 glutathione synthetase
Probab=24.22 E-value=56 Score=29.42 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=27.8
Q ss_pred cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 125 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
-.|+||...+||..++- +++...++.+....... -..+++++.|.
T Consensus 363 ~~VLKPQrEGGGNNiYg----~dI~~~L~~l~~~~~~e--~~ayILMerI~ 407 (478)
T PLN02977 363 LFVLKPQREGGGNNIYG----DDLRETLERLQKEGGED--LAAYILMQRIF 407 (478)
T ss_pred heeEcCcCccchhhcch----HHHHHHHHHcccCChhh--hhheehhhccC
Confidence 38999999999988863 56666666653210001 13466666664
No 390
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=24.18 E-value=91 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.1
Q ss_pred cceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 220 PGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 220 pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
|++-....++-|+.|++||.|+.+|
T Consensus 62 ~~i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 62 PSIEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred CceEEEEEcCCCCEeCCCCEEEEEe
Confidence 4455677899999999999999886
No 391
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.83 E-value=4e+02 Score=21.94 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHhCCCEEccccc---cC--CCCHHHHHHHHHcCCeEe
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGYG---FL--SENASFVSRLKEEGVVFI 74 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~~---~~--~e~~~~~~~~~~~g~~~~ 74 (246)
..|.+.+.+.+.++..+.++|....- .. .....+.+.+...++.++
T Consensus 24 gky~s~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~~~~~L 74 (267)
T CHL00162 24 GKYKSLKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWNKLWLL 74 (267)
T ss_pred CCCCCHHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchhccEEC
Confidence 45888899999999999998875531 11 122356677776777666
No 392
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=23.72 E-value=1.9e+02 Score=23.08 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCC--CCCCCCccccC--CHHHHHHHHHHhCCcE
Q psy10619 87 KLESKKLAKEAGV--NIIPGFNGIIR--DADHCVEIARDIGYPV 126 (246)
Q Consensus 87 K~~~~~~l~~~gi--p~p~~~~~~~~--~~~~~~~~~~~~~~P~ 126 (246)
+..+++.+++.|+ -.|+-+ ..+. ....+.++++.+|.|.
T Consensus 92 ~~~lk~~~e~~gi~~~~P~~~-CsL~~~~~p~i~~F~~~fGkP~ 134 (217)
T PF02593_consen 92 RRQLKKQLEEFGIEVEFPKPF-CSLEENGNPQIDEFAEYFGKPK 134 (217)
T ss_pred HHHHHHHHHhcCceeecCccc-cccCCCCChhHHHHHHHhCCce
Confidence 4456677777763 335532 1111 2345777888888883
No 393
>PLN00200 argininosuccinate synthase; Provisional
Probab=23.53 E-value=3.4e+02 Score=23.96 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCEEccccccC-CCCHHH---HHHHH-HcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 34 VDKIIDAIRQTRADAVHPGYGFL-SENASF---VSRLK-EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~~~~-~e~~~~---~~~~~-~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
...+.+++++.++++|.-++-.. .....+ .+.+. +. .++ .+..-. .+..|...+++++++|||++.
T Consensus 102 ~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~~~al~pel--~Vi-aPlre~-~~~~r~e~~~~A~~~Gipv~~ 172 (404)
T PLN00200 102 AKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNPEL--KVV-APWREW-DIKGREDLIEYAKKHNIPVPV 172 (404)
T ss_pred HHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHHHHHhCCCC--eee-Cchhhc-CCCCHHHHHHHHHHcCCCCCC
Confidence 56788899999999887554221 122233 22232 23 333 222221 123699999999999999763
No 394
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=23.06 E-value=5.1e+02 Score=22.69 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCEEccccccCC-CCHHHHHHHHHc--CCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCC
Q psy10619 35 DKIIDAIRQTRADAVHPGYGFLS-ENASFVSRLKEE--GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v~~~~~~~~-e~~~~~~~~~~~--g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~ 104 (246)
..+.+.+++.++++|.-++-... ....+...+... .+.++.|=.+ . ...+|...+++++++|||++..
T Consensus 96 ~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~pel~ViaPlre-~-~~~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 96 KALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALNPDLKIIAPWRD-W-EFLSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhCCCCEEEcchhh-h-hcCCHHHHHHHHHHcCCCCccc
Confidence 45578899999999876642211 222333333322 3555533222 2 1348999999999999998753
No 395
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.88 E-value=1.1e+02 Score=25.06 Aligned_cols=43 Identities=9% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCC--HHHHHHHHHcCCeEe
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVFI 74 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~--~~~~~~~~~~g~~~~ 74 (246)
++.+.+.++++++++++|+-....++.. ....+.+.+.|+|++
T Consensus 52 l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 52 LDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred CCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 5678888999999999988553221111 145677888888876
No 396
>PRK11637 AmiB activator; Provisional
Probab=22.84 E-value=60 Score=28.68 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.4
Q ss_pred eeeeeecCCCeeeCCCeEEEEc
Q psy10619 223 VKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 223 i~~l~~~~G~~v~~g~~~~v~e 244 (246)
...+.|+.||.|++||+|..+-
T Consensus 378 ~~~~~v~~G~~V~~G~~ig~~g 399 (428)
T PRK11637 378 NQSALVSVGAQVRAGQPIALVG 399 (428)
T ss_pred CCcCCCCCcCEECCCCeEEeec
Confidence 4567899999999999998653
No 397
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=22.70 E-value=53 Score=29.68 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.5
Q ss_pred eeeeecCCCeeeCCCeEEE
Q psy10619 224 KSVNCKVGDQIMEGQELCV 242 (246)
Q Consensus 224 ~~l~~~~G~~v~~g~~~~v 242 (246)
-.+.|++||.|.+||.|..
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~ 63 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTR 63 (529)
T ss_pred cceEEeeCCEEeeCceeec
Confidence 4678999999999999864
No 398
>PRK11649 putative peptidase; Provisional
Probab=22.66 E-value=67 Score=28.60 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=15.6
Q ss_pred eeecCCCeeeCCCeEEEEc
Q psy10619 226 VNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 226 l~~~~G~~v~~g~~~~v~e 244 (246)
+.++.||.|++||.|..+-
T Consensus 365 ~~v~~Gq~V~~Gq~IG~vG 383 (439)
T PRK11649 365 LLVKPGQKVKRGDRIALSG 383 (439)
T ss_pred ccCCCcCEECCCCeEEEEc
Confidence 3488999999999998654
No 399
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=22.65 E-value=2.1e+02 Score=25.03 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHhCCCEEccccccCCCCH---HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCC
Q psy10619 31 YINVDKIIDAIRQTRADAVHPGYGFLSENA---SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104 (246)
Q Consensus 31 ~~~~~~l~~~~~~~~~d~v~~~~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~ 104 (246)
.+....+++++++.+.++|--++-+-+.+. .+.-..-.-.+.++ .+.. ... ..+..+-++++++|||+|.+
T Consensus 98 PLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~~~al~p~lkii-AP~R-ew~-~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 98 PLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAILALNPDLKII-APWR-EWN-LTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeeehhhhCCCcEEE-eehh-hhc-cChHHHHHHHHHcCCCcccc
Confidence 355678899999999999875542222221 11112224456666 3333 222 33788899999999999975
No 400
>KOG0368|consensus
Probab=22.64 E-value=70 Score=33.06 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=29.9
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEEc
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~e 244 (246)
..+++|-||.+.+..|+-|+-|.+||+-+-+|
T Consensus 686 t~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 686 TVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred ceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 45999999999999999999999999988887
No 401
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=22.63 E-value=3.6e+02 Score=21.72 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=39.8
Q ss_pred HHHHHHHhCCcEEEEeccCCCCceeEEe------CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeec
Q psy10619 115 CVEIARDIGYPVMIKASAGGGGKGMRIA------NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTY 187 (246)
Q Consensus 115 ~~~~~~~~~~P~vvKp~~g~g~~gv~~v------~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d 187 (246)
+.+.++++|.+-++|- +||+|+.++ .+.++.+...+.+........ .+.+..+..... +.-+.++.+.+
T Consensus 124 vr~~L~~lgL~sf~KT---SG~kGlHv~vPl~~~~~~~~~r~fa~~iA~~l~~~~-P~~~t~~~~k~~R~grvfiDylqN 199 (228)
T cd04865 124 VREVLDELGLRGYPKT---SGARGLHIYVPIAPRYTFEEVRRFAELLAREVERRL-PDLATTERWKKERGGRVYLDYLQN 199 (228)
T ss_pred HHHHHHHcCCccceEc---cCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHC-chhhhhHhhHHhCCCCEEEECccC
Confidence 3445566777777774 577777653 456776665555544433333 223334444432 33566777776
Q ss_pred cee
Q psy10619 188 KFL 190 (246)
Q Consensus 188 ~~~ 190 (246)
+.+
T Consensus 200 ~~g 202 (228)
T cd04865 200 ARG 202 (228)
T ss_pred CCC
Confidence 655
No 402
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.46 E-value=4.3e+02 Score=21.50 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHhCCCEEccccc----cCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHH
Q psy10619 29 QSYINVDKIIDAIRQTRADAVHPGYG----FLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKE 96 (246)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~d~v~~~~~----~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~ 96 (246)
..|.+.+.+.+.++..+.+.+....- ..+....+.+.+...++.++ |+..-.....+-..+.++.++
T Consensus 24 gky~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~~~~~~L-PNTaGc~taeEAv~tArlARE 94 (262)
T COG2022 24 GKYPSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIPLGVTLL-PNTAGCRTAEEAVRTARLARE 94 (262)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhhhcCcEeC-CCccccCCHHHHHHHHHHHHH
Confidence 45888899999999999888764431 12233467788888898877 443333333333334444443
No 403
>PRK10481 hypothetical protein; Provisional
Probab=22.17 E-value=2.3e+02 Score=22.70 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=29.2
Q ss_pred CHHHHHHHHH---HhCCCEEccccccCCCCHHHHHHH-HHcCCeEeCCCHHHHHH
Q psy10619 33 NVDKIIDAIR---QTRADAVHPGYGFLSENASFVSRL-KEEGVVFIGPTAECIRG 83 (246)
Q Consensus 33 ~~~~l~~~~~---~~~~d~v~~~~~~~~e~~~~~~~~-~~~g~~~~g~~~~~~~~ 83 (246)
+.+.+.+.++ ..+.|+|+..+-+++. .+.+.+ +..|+|++.+...++++
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~--~~~~~le~~lg~PVI~~n~a~ar~ 219 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGYHQ--RHRDLLQKALDVPVLLSNVLVARL 219 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCcCH--HHHHHHHHHHCcCEEcHHHHHHHH
Confidence 4456666666 4578888877644443 233333 45788888555544443
No 404
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=22.15 E-value=58 Score=30.88 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.2
Q ss_pred ceeeeeeecCCCeeeCCCeEEEE
Q psy10619 221 GLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 221 g~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
|.--++.|++||.|.+||.|..-
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~ 68 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQG 68 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeec
Confidence 45567999999999999999753
No 405
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.13 E-value=1.4e+02 Score=28.87 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=43.1
Q ss_pred CCCEEccccccCCCCHHHHHHH--HHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCC
Q psy10619 45 RADAVHPGYGFLSENASFVSRL--KEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104 (246)
Q Consensus 45 ~~d~v~~~~~~~~e~~~~~~~~--~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~ 104 (246)
.+=+++.++|..+.|-.....+ -..|=.-=+++..++..+.|+...|+.|++.||..|..
T Consensus 500 AplVvl~GHGS~s~NNP~~aaLDCGACgG~~G~~NARv~A~llNdp~VR~~L~~rGI~IP~d 561 (788)
T PF10070_consen 500 APLVVLVGHGSSSTNNPHAAALDCGACGGQSGGPNARVLAALLNDPEVREGLAERGIDIPDD 561 (788)
T ss_pred CCeEEEecCCCCCCCChhhhhcccccCCCCCCCccHHHHHHHhCCHHHHHHHHHcCCCCCCC
Confidence 3447778888776665444443 33333334577888888888889999999999999985
No 406
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=22.08 E-value=4.3e+02 Score=21.43 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCC
Q psy10619 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104 (246)
Q Consensus 61 ~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~ 104 (246)
.+...|+..|+.-.-...-+.-++......+++.+..|||.|+-
T Consensus 4 ~~~~~L~~lGlt~yEa~vY~aLl~~g~~tA~eis~~sgvP~~kv 47 (247)
T COG1378 4 ELEENLQKLGLTEYEAKVYLALLCLGEATAKEISEASGVPRPKV 47 (247)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCccHHHHHHHcCCCchhH
Confidence 34566777777322122222345567888999999999999983
No 407
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.97 E-value=2.2e+02 Score=24.30 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCC--cEEEEeccCCCCceeEEeCCH-HHHHHHHHH
Q psy10619 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY--PVMIKASAGGGGKGMRIANND-QEAIEGFKL 154 (246)
Q Consensus 85 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~--P~vvKp~~g~g~~gv~~v~~~-~el~~~~~~ 154 (246)
-.|..+.+.|-+.|.--||| ..+..++...+...+- +++.=|...+..+|..=+... .++..++..
T Consensus 247 VqKgTlvE~lw~~g~YRPPw----LWSivEVL~~~~~~~~~~~i~sdp~G~gs~RGphNc~~cd~~v~~aI~~ 315 (358)
T COG1244 247 VQKGTLVEKLWRRGLYRPPW----LWSIVEVLREAKKTGPMLRILSDPVGAGSDRGPHNCGKCDKRVADAIRK 315 (358)
T ss_pred cchhhHHHHHHHcCCCCCch----HHHHHHHHHHHHhcCCCCceeecCCCCCCCCCCcccchhcHHHHHHHHH
Confidence 36888999999999999996 3567777777777665 888899988888998766432 355565554
No 408
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.89 E-value=1.5e+02 Score=26.82 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHh----CCCEEccccccCCCCHHHHHHHHHcCCeEeCC--CH------H-----HHHH---hcCHHHHH
Q psy10619 32 INVDKIIDAIRQT----RADAVHPGYGFLSENASFVSRLKEEGVVFIGP--TA------E-----CIRG---MGDKLESK 91 (246)
Q Consensus 32 ~~~~~l~~~~~~~----~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~--~~------~-----~~~~---~~dK~~~~ 91 (246)
.+.+.+.+++++. ++|+|+.++..++....+...++..++|++-- .+ + .+.+ +.-+..+-
T Consensus 49 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~~~~l~~PvL~~~~q~~~~l~~~sidmd~m~l~qaahG~~e~~ 128 (484)
T cd03557 49 TTPDEILAVCREANADDNCAGVITWMHTFSPAKMWIAGLTALQKPLLHLHTQFNREIPWDTIDMDFMNLNQSAHGDREFG 128 (484)
T ss_pred CCHHHHHHHHHHccccCCccEEEEccCCCchHHHHHHHHHHcCCCEEEEccCCCccCCCCCccchHHhhhhhcCCcHHHH
Confidence 5678888888885 49999988766665556677788888887731 11 0 1111 12344455
Q ss_pred HHHHHhCCCC
Q psy10619 92 KLAKEAGVNI 101 (246)
Q Consensus 92 ~~l~~~gip~ 101 (246)
..+++.|+|.
T Consensus 129 ~il~R~gi~~ 138 (484)
T cd03557 129 FIGSRMRIPR 138 (484)
T ss_pred HHHHHcCCCe
Confidence 6788999984
No 409
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.39 E-value=2e+02 Score=22.61 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCeEeC
Q psy10619 36 KIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIG 75 (246)
Q Consensus 36 ~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g 75 (246)
..++.+...++|+|+.............+.+.+.|+|++.
T Consensus 46 ~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 46 EQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 3344445567998886643323334566778888888875
No 410
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=21.32 E-value=4.9e+02 Score=24.65 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHH-HhCCCEEccccccCCCCHHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCccc
Q psy10619 30 SYINVDKIIDAIR-QTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGI 108 (246)
Q Consensus 30 ~~~~~~~l~~~~~-~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 108 (246)
+|...+.+.++.+ -.+.++.+.. +...-+..+....++.|+.+ ..+..... -..+.+.++.+||..|..+.++
T Consensus 81 t~v~~Dil~R~l~~~~Gy~V~~v~-nitDidDKIi~~A~~~g~~~---~~el~~~~--~~~f~~d~~~Lni~~p~~~~r~ 154 (651)
T PTZ00399 81 TYVTFDIIRRILEDYFGYDVFYVM-NITDIDDKIIKRAREEKLSI---FLELARKW--EKEFFEDMKALNVRPPDVITRV 154 (651)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEe-CCCCcchHHHHHHHHhCCCc---HHHHHHHH--HHHHHHHHHHcCCCCCccccCc
Confidence 3677888999998 6788877755 22223345666667777731 12222222 2347888999999887765555
Q ss_pred cCCHHHHHHHHHHh---CCcE
Q psy10619 109 IRDADHCVEIARDI---GYPV 126 (246)
Q Consensus 109 ~~~~~~~~~~~~~~---~~P~ 126 (246)
....+++.++.+.+ ||-.
T Consensus 155 tehi~~ii~~i~~Li~~G~aY 175 (651)
T PTZ00399 155 SEYVPEIVDFIQKIIDNGFAY 175 (651)
T ss_pred CccHHHHHHHHHHHHHCCCEE
Confidence 55667777776654 6654
No 411
>PF03917 GSH_synth_ATP: Eukaryotic glutathione synthase, ATP binding domain; InterPro: IPR005615 This entry represents eukaryotic glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. ; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=21.31 E-value=1.4e+02 Score=25.93 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=26.5
Q ss_pred cEEEEeccCCCCceeEEeCCHHHHHHHHHHHHHHHHhhcCCCceEEEeccc
Q psy10619 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 125 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~ 175 (246)
-.|+||...+||..++ .+++...++.+... .. ...+++++.|.
T Consensus 258 ~yVLKPQREGGGNNiy----g~~i~~~L~~l~~~--~e--~~ayILM~rI~ 300 (370)
T PF03917_consen 258 NYVLKPQREGGGNNIY----GEDIPEFLKKLSES--EE--RSAYILMERIH 300 (370)
T ss_dssp GEEEEESS-SSSSCBE----HHHHHHHHHTCTCT--GG--GGGEEEEE---
T ss_pred heEecccccCCccccc----HHHHHHHHHhcCCh--hh--hhheeeecccc
Confidence 3899999999998886 46677777665330 00 14577777775
No 412
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=21.09 E-value=4.4e+02 Score=23.16 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCEEccccccCCCCH-HHHHHHH--HcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 34 VDKIIDAIRQTRADAVHPGYGFLSENA-SFVSRLK--EEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~~~~~~~~e~~-~~~~~~~--~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
...+.+++++.++++|.-++-+...+. .+.+... ..++.++-|=. ..-.+|...+++++++|||++.
T Consensus 95 ~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~~~l~viaPLr---ew~l~r~ei~~ya~~~Gip~~~ 164 (394)
T TIGR00032 95 AKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWR---DLNFTREEEIEYAIQCGIPYPM 164 (394)
T ss_pred HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhCCCCeEECchh---hcCCCHHHHHHHHHHcCCCeeE
Confidence 345788899999999986642221121 2222222 33555553321 2334788899999999999864
No 413
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=21.00 E-value=1.9e+02 Score=18.69 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=19.6
Q ss_pred EEEEeccCCCCceeEEeCCHHHHHHHHHH
Q psy10619 126 VMIKASAGGGGKGMRIANNDQEAIEGFKL 154 (246)
Q Consensus 126 ~vvKp~~g~g~~gv~~v~~~~el~~~~~~ 154 (246)
+++-|.....|+|.+++.+.+-+..+...
T Consensus 27 i~~D~~~k~~GRGaYvc~~~~c~~~a~kk 55 (78)
T PF04296_consen 27 IVPDPSGKLPGRGAYVCPDPECLEKAKKK 55 (78)
T ss_dssp EEEETTS---SEEEEEES-HHHHHHHHHH
T ss_pred EEECCCCCCCCCeEEEcCCHHHHHHHHHH
Confidence 66666777799999999998877776654
No 414
>PRK00208 thiG thiazole synthase; Reviewed
Probab=20.81 E-value=4.7e+02 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=14.5
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhc
Q psy10619 141 IANNDQEAIEGFKLSSQEAAASF 163 (246)
Q Consensus 141 ~v~~~~el~~~~~~~~~~~~~~~ 163 (246)
...|+.....+|.......+..|
T Consensus 209 ka~dP~~ma~af~~Av~aGr~a~ 231 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEAGRLAY 231 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777666554444
No 415
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.70 E-value=4.5e+02 Score=21.11 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhCCCEEcccc----ccC-CCC-HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCC-CC-
Q psy10619 33 NVDKIIDAIRQTRADAVHPGY----GFL-SEN-ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII-PG- 104 (246)
Q Consensus 33 ~~~~l~~~~~~~~~d~v~~~~----~~~-~e~-~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p-~~- 104 (246)
+...+++.+.+.+++.++.+. |.. .-+ ..+.+..+..++|++... -..+.....++++..|+... -+
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~G-----Gv~s~~d~~~~~~~~G~~gvivg~ 228 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASG-----GAGNLEHFVEAFTEGGADAALAAS 228 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEEC-----CCCCHHHHHHHHHhCCccEEeEhH
Confidence 445666667777887665421 110 111 123444455567776433 13444455555655555321 11
Q ss_pred -CccccCCHHHHHHHHHHhCCcE
Q psy10619 105 -FNGIIRDADHCVEIARDIGYPV 126 (246)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~P~ 126 (246)
++.---+.+++.+.+.+.|+|+
T Consensus 229 al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 229 IFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHcCCCCHHHHHHHHHHCCCcc
Confidence 0011234566666666666653
No 416
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=20.69 E-value=4e+02 Score=20.50 Aligned_cols=90 Identities=9% Similarity=0.053 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHhCCCEEccccccCCCCHHHHHHHHHcCCe------EeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Q psy10619 32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV------FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF 105 (246)
Q Consensus 32 ~~~~~l~~~~~~~~~d~v~~~~~~~~e~~~~~~~~~~~g~~------~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~ 105 (246)
.....+++.+++.++...+.+.. ....+...++..|+. .+..+.+....--+...+...+++.|+..|...
T Consensus 90 ~G~~~~L~~L~~~g~~~~ivT~~---~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 166 (220)
T TIGR03351 90 PGAEEAFRSLRSSGIKVALTTGF---DRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSV 166 (220)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHe
Confidence 45677888888878776665531 222334445545542 111111111111345667888899998743322
Q ss_pred ccccC-CHHHHHHHHHHhCCcE
Q psy10619 106 NGIIR-DADHCVEIARDIGYPV 126 (246)
Q Consensus 106 ~~~~~-~~~~~~~~~~~~~~P~ 126 (246)
. .+. +..+ ..+++..|.+.
T Consensus 167 ~-~igD~~~D-i~aa~~aG~~~ 186 (220)
T TIGR03351 167 A-VAGDTPND-LEAGINAGAGA 186 (220)
T ss_pred E-EeCCCHHH-HHHHHHCCCCe
Confidence 1 333 4444 34567788887
No 417
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.54 E-value=1e+02 Score=22.54 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=27.0
Q ss_pred cceeccccceeeeeeecCCCeeeCCCeEEEE
Q psy10619 213 KILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243 (246)
Q Consensus 213 ~~l~sp~pg~i~~l~~~~G~~v~~g~~~~v~ 243 (246)
..+.=|+-|.+.-.-..+|+++.+|++++-+
T Consensus 92 ~ll~iPvEGYvVtpIaDvG~RvrkGd~~AAv 122 (161)
T COG4072 92 ELLLIPVEGYVVTPIADVGNRVRKGDPFAAV 122 (161)
T ss_pred EEEEEecCcEEEEEeecccchhcCCCceeEE
Confidence 3577789999999999999999999998754
No 418
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.47 E-value=3.4e+02 Score=19.65 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhCCCEEc
Q psy10619 34 VDKIIDAIRQTRADAVH 50 (246)
Q Consensus 34 ~~~l~~~~~~~~~d~v~ 50 (246)
.+.+.+.+.++++|+|.
T Consensus 43 ~e~i~~~a~~~~~d~V~ 59 (137)
T PRK02261 43 QEEFIDAAIETDADAIL 59 (137)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 34555555555555544
No 419
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.45 E-value=1.2e+02 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=21.5
Q ss_pred cCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 69 EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 69 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
.|+.+++-+......-.++...++++++++++.|-
T Consensus 55 ~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (126)
T cd03012 55 DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPV 89 (126)
T ss_pred CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCE
Confidence 45666654321111224677888899999998763
No 420
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=20.28 E-value=2.5e+02 Score=23.01 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhCCcEEEEeccCCCCceeEEeCCHHHHHHHH
Q psy10619 90 SKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGF 152 (246)
Q Consensus 90 ~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~ 152 (246)
+.+..+..|+..|.-+ ..+.+.-+.+|+|++.+-..|.+++|+.+-..-..+...+
T Consensus 34 ~s~AA~~l~~s~~a~s-------~~i~~le~~lg~~L~~r~~gg~~g~~~~lT~~G~~l~~~~ 89 (263)
T PRK10676 34 ISQGAKLAGISYKSAW-------DAINEMNQLSEHILVERATGGKGGGGAVLTRYGERLIQLY 89 (263)
T ss_pred HHHHHHHhCCCHHHHH-------HHHHHHHHHhCCCeEEEecCCCCCCCcEECHHHHHHHHHH
Confidence 5566777888876521 2233334568999999999888888887644433443333
No 421
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.21 E-value=6e+02 Score=22.33 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=58.2
Q ss_pred cccCCCCHHHHHHHHHcCCeEeCC-----CHHHHH--------HhcCHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHH
Q psy10619 53 YGFLSENASFVSRLKEEGVVFIGP-----TAECIR--------GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119 (246)
Q Consensus 53 ~~~~~e~~~~~~~~~~~g~~~~g~-----~~~~~~--------~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 119 (246)
.|.+--|+.+.+.|++.|+.++.. +.+-+. .-.=-...++.+++.|+.+...+--.+..........
T Consensus 74 lG~IIHNp~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~ 153 (387)
T PRK13371 74 TNEIIHNPSVNQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKH 153 (387)
T ss_pred ecCCcCCHHHHHHHHhCCCEEEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHH
Confidence 355567888999999999999842 111110 0011224567788899988765322233333333334
Q ss_pred HHhCCcEEE---------EeccCCCCceeEEeCCHHHHHHHH
Q psy10619 120 RDIGYPVMI---------KASAGGGGKGMRIANNDQEAIEGF 152 (246)
Q Consensus 120 ~~~~~P~vv---------Kp~~g~g~~gv~~v~~~~el~~~~ 152 (246)
.+-||-+|+ +...|.. ..+.++.+.+|+....
T Consensus 154 ~~~Gy~iIIiG~~~HpEV~Gi~g~a-~~~~VV~~~~e~~~l~ 194 (387)
T PRK13371 154 KKKDFTSIIHGKYKHEETRATSSFA-GTYLVVLDLEEAQYVA 194 (387)
T ss_pred HhCCCEEEEEcCCCCcceeeecccc-CceEEECCHHHHHHHh
Confidence 455888776 2233333 2367889999987654
No 422
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=20.21 E-value=2.4e+02 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Q psy10619 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122 (246)
Q Consensus 86 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 122 (246)
+.....++|++.|+++++.+...+.+.+++.++.+.+
T Consensus 232 t~~e~l~~L~~~GF~v~~~~~~~~~~~~~i~~~~~~~ 268 (562)
T PRK08097 232 SMPERLAQLATAGFPLTQRYTHPVKNAEEVARWRERW 268 (562)
T ss_pred CHHHHHHHHHHCCCCcCccceEeeCCHHHHHHHHHHH
Confidence 4555677899999999973334577888887766643
No 423
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=20.20 E-value=1.9e+02 Score=26.05 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=28.6
Q ss_pred cEEEEeccCCCCceeEEeCCHHHHHHHHHHHH-HHHHhhcCCCceEEEeccc
Q psy10619 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSS-QEAAASFGDDRILVEKFIK 175 (246)
Q Consensus 125 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~-~~~~~~~~~~~~lve~~i~ 175 (246)
-.|+||...+||..++- +++...++.+. .. . -..+++++.|.
T Consensus 357 ~~VLKPQrEGGGNNiYg----~dI~~~L~~l~~~~---e--~~ayILMerI~ 399 (471)
T cd00228 357 LFVLKPQREGGGNNIYG----EEMREALLKLQGSE---E--RAAYILMEKIF 399 (471)
T ss_pred heEEcCcCcCcccccch----HHHHHHHHhcCChh---h--hceeeeeeccC
Confidence 48999999999988863 66666666653 21 1 24567777775
No 424
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=20.20 E-value=4.1e+02 Score=21.66 Aligned_cols=72 Identities=24% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHHHHhCCcEEEEeccCCCCceeEEe------CCHHHHHHHHHHHHHHHHhhcCCCceEEEecccC-cceEEEEeeec
Q psy10619 115 CVEIARDIGYPVMIKASAGGGGKGMRIA------NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN-PRHIEIQGTTY 187 (246)
Q Consensus 115 ~~~~~~~~~~P~vvKp~~g~g~~gv~~v------~~~~el~~~~~~~~~~~~~~~~~~~~lve~~i~~-g~e~~v~v~~d 187 (246)
+.+.++++|.+-++|- +||+|+.++ .+.++.+...+.+........ .+.+..|..... +.-+.++.+.+
T Consensus 139 ~r~~L~~lgL~~f~KT---SG~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~-Pd~~t~~~~k~~R~gkvfiDylqN 214 (245)
T TIGR02778 139 IRELLDELGLESFVKT---SGGKGLHVYVPLRPTLSWDEVKDFAKALAQALAQQM-PDRFTAEMSKKNRVGKIFVDYLRN 214 (245)
T ss_pred HHHHHHHcCCccceEc---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-chhhhhHhhHHhCCCCEEEECccC
Confidence 3445567788888885 577777653 456776665555444333333 223333443332 33566777766
Q ss_pred cee
Q psy10619 188 KFL 190 (246)
Q Consensus 188 ~~~ 190 (246)
+.+
T Consensus 215 ~~g 217 (245)
T TIGR02778 215 ARG 217 (245)
T ss_pred CCC
Confidence 655
No 425
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.18 E-value=2.6e+02 Score=20.49 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHcC-CeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCC
Q psy10619 61 SFVSRLKEEG-VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP 103 (246)
Q Consensus 61 ~~~~~~~~~g-~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~ 103 (246)
.+.+...+.| ..+. .+||. .++.+++.|||+.-
T Consensus 89 ~i~~~a~~~~~~iVa---------TnD~e-Lk~rlr~~GIPvi~ 122 (136)
T COG1412 89 CLLEAALKHGRYIVA---------TNDKE-LKRRLRENGIPVIT 122 (136)
T ss_pred HHHHHHHHcCCEEEE---------eCCHH-HHHHHHHcCCCEEE
Confidence 4556666666 3332 34555 45556666888753
No 426
>PRK08392 hypothetical protein; Provisional
Probab=20.06 E-value=4.3e+02 Score=20.63 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCCEE-cccccc----CCCC---HHHHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHhCCCCCCCCc
Q psy10619 35 DKIIDAIRQTRADAV-HPGYGF----LSEN---ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN 106 (246)
Q Consensus 35 ~~l~~~~~~~~~d~v-~~~~~~----~~e~---~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~ 106 (246)
+.+.+.++...+|++ ++.... .... ..+.+.+.+.|+.+=-+.. ....+. ..-+.+++.|++..-+.-
T Consensus 107 ~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~---~~~p~~-~~l~~~~~~G~~~~igSD 182 (215)
T PRK08392 107 ELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSR---YRVPDL-EFIRECIKRGIKLTFASD 182 (215)
T ss_pred HHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCC---CCCCCH-HHHHHHHHcCCEEEEeCC
Confidence 677777777777765 332110 0001 1445667778876632331 112333 356667788887543210
Q ss_pred ----cccCCHHHHHHHHHHhCCcE--EEEe
Q psy10619 107 ----GIIRDADHCVEIARDIGYPV--MIKA 130 (246)
Q Consensus 107 ----~~~~~~~~~~~~~~~~~~P~--vvKp 130 (246)
..+...+.+.+.+++.|++. ++||
T Consensus 183 AH~~~~vg~~~~a~~~~~~~g~~~~~~~~~ 212 (215)
T PRK08392 183 AHRPEDVGNVSWSLKVFKKAGGKKEDLLFS 212 (215)
T ss_pred CCChHHCCcHHHHHHHHHHcCCCHHHeecc
Confidence 01223566777888888873 6666
Done!