RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10619
(246 letters)
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 281 bits (722), Expect = 2e-91
Identities = 104/173 (60%), Positives = 134/173 (77%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
HV++ADEAV IGP AA+SY+++DKIIDA R+T A A+HPGYGFLSENA F +++ G
Sbjct: 40 LHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+VFIGP+A IR MGDK+ +KKLA EAGV +PG++G I+DA V IA +IGYPV+IKA
Sbjct: 100 LVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
SAGGGGKGMR+ +E E + + +EA ASFGDDR+ +EK++ PRHIEIQ
Sbjct: 160 SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQ 212
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 198 EYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
E KL K + L APMPG V SV K G ++ G L V+
Sbjct: 561 ELDKLGGAKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVL 606
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 214 ILHAPMPGLVKSVNCKVGDQIMEGQEL 240
L AP G+V + GDQ+ G L
Sbjct: 614 TLRAPRDGVVAKLAVAEGDQVAVGTVL 640
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 264 bits (677), Expect = 7e-87
Identities = 91/172 (52%), Positives = 126/172 (73%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HV+LADEAVCIGP + +SY+N+ II A T ADA+HPGYGFLSENA F ++ G
Sbjct: 41 HVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGF 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP+AE IR MGDK+ +K K+AGV ++PG +G + D + + IA++IGYPV+IKA+
Sbjct: 101 TFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG+GMR+ + E + F ++ EA A+FG+ + +EK+++NPRHIEIQ
Sbjct: 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQ 212
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 246 bits (629), Expect = 1e-79
Identities = 90/173 (52%), Positives = 127/173 (73%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
HVK+ADEA IG P +SY+N++KII+ ++T A+A+HPGYG LSENASF R KEEG
Sbjct: 40 LHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+VFIGP+A+ I MG K+E+++ + AGV ++PG + DA+ + IAR IGYPVM+KA
Sbjct: 100 IVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKA 159
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
SAGGGG GM++ +QE + F+ + + AA FG+ + +EK+I++PRHIEIQ
Sbjct: 160 SAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQ 212
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 234 bits (598), Expect = 4e-75
Identities = 92/172 (53%), Positives = 126/172 (73%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HV LADEAVCIGP +A+SY+N+ II A T ADA+HPGYGFLSENA+F + + G
Sbjct: 41 HVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGF 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP+AE IR MGDK+ + + K+AGV +PG +G++ D + V IA+ IGYPV+IKA+
Sbjct: 101 TFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG+GMR+ E ++ ++ EA A+FG+D + +EK+I+NPRH+EIQ
Sbjct: 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQ 212
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 235 bits (601), Expect = 6e-75
Identities = 83/172 (48%), Positives = 121/172 (70%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
VK ADEA IGP ++SY+N+++IID ++ ADA+HPGYGFL+EN F ++ G+
Sbjct: 41 FVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGI 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
VFIGP+++ I MG K+ +KKL K+AGV ++PG I D + EIA +IGYPV+IKAS
Sbjct: 101 VFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG GMR+ +++E + + + A ++FGD + +EK+++ PRHIEIQ
Sbjct: 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQ 212
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 233 bits (595), Expect = 1e-74
Identities = 90/172 (52%), Positives = 125/172 (72%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HV+LADEAVCIGP + SY+N+ II A T A A+HPG+GFLSEN+ F KE +
Sbjct: 41 HVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNI 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
VFIGP +E I MG+K ++++ +AGV ++PG G I + + +EIA++IGYPVM+KAS
Sbjct: 101 VFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG+G+RI +++E I+ F + EA A+FGDD + +EKFI+NP+HIE Q
Sbjct: 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQ 212
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 229 bits (586), Expect = 3e-73
Identities = 94/173 (54%), Positives = 129/173 (74%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
HV LADEAVCIGP +A SY+N+D II A +T ADA+HPGYGFLSENA+F E G
Sbjct: 40 LHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP+AE IR MGDK+ +++L +AGV ++PG +G + D + + IA +IGYPV++KA
Sbjct: 100 LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKA 159
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+AGGGG+GMR+ N++E F+ + EA A+FG+ R+ +EKFI+ PRHIE+Q
Sbjct: 160 AAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQ 212
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 232 bits (594), Expect = 4e-70
Identities = 87/171 (50%), Positives = 121/171 (70%), Gaps = 5/171 (2%)
Query: 16 ADEAVCIGP---PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
ADEA IG PV A Y+++D+II +Q DA+HPGYGFLSEN F E G+
Sbjct: 48 ADEAYLIGEGKHPVRA--YLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGIT 105
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
FIGPTAE +R +GDK+ ++ A +AGV +IPG G I D + +E A +IGYP+M+KASA
Sbjct: 106 FIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASA 165
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
GGGG+GMRI +++E E F+ + +EA A+FG+D + +EK+++NPRHIE+Q
Sbjct: 166 GGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQ 216
Score = 38.2 bits (90), Expect = 0.003
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 204 PPKPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
+ K D H APMPG V +V K GD++ G L V+
Sbjct: 1066 AAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVI 1107
Score = 30.1 bits (69), Expect = 1.3
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
ET I AP+ G VK V K GDQ+ E +L V
Sbjct: 1113 ETTI-TAPVDGTVKRVLVKAGDQV-EAGDLLVE 1143
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 217 bits (554), Expect = 3e-68
Identities = 84/171 (49%), Positives = 122/171 (71%)
Query: 13 VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
++ADEAV IGP AA+SY+N I+ A RQ ADA+HPGYGFLSENA+F ++ G++
Sbjct: 45 ARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLI 104
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
F+GP A+ IR MGDK +++ A+ AGV +PG +G++ D +E+A IGYP+MIKA+A
Sbjct: 105 FVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAA 164
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
GGGG+G+R+A++ + L+ +EA A+FGD + +E+FI RHIE+Q
Sbjct: 165 GGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQ 215
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as urea
[Central intermediary metabolism, Nitrogen metabolism].
Length = 1201
Score = 213 bits (545), Expect = 2e-63
Identities = 82/181 (45%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Query: 3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF 62
+ D +HV ADEAVC+G AA+SY+++DKI+ A ++T A A+HPGYGFLSENA+F
Sbjct: 31 YSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAF 90
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
+ G+VF+GPT E IR G K +++LA+ AGV ++PG G++ D +E A++I
Sbjct: 91 AEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPG-TGLLSSLDEALEAAKEI 149
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
GYPVM+K++AGGGG GM+ ++ E E F+ + + FGD + +E+F++N RH+E+
Sbjct: 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEV 209
Query: 183 Q 183
Q
Sbjct: 210 Q 210
Score = 28.8 bits (65), Expect = 2.8
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYA 200
IA+ + + E + E A + VE E G +K L++ E
Sbjct: 1107 IASGNADLAEE-VTEAPEEEADLPEGAEQVES--------EYAGNFWKVLVEVGDRVEAG 1157
Query: 201 KLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ L + + AP+ G V + C+ GD + G + V+
Sbjct: 1158 QPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVL 1200
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 206 bits (525), Expect = 9e-61
Identities = 80/171 (46%), Positives = 117/171 (68%), Gaps = 5/171 (2%)
Query: 16 ADEAVCIGP---PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
ADE+ IG PV A Y+++D+II +++ ADA+HPGYGFLSEN F E G+
Sbjct: 50 ADESYLIGEGKGPVEA--YLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGIT 107
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
FIGP E + +GDK++++ A +AGV +IPG +G I + +E A + GYPVMIKA+A
Sbjct: 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAA 167
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
GGGG+GMR+ ++ + E F+ + EA A+FG+D + VEK ++NP+HIE+Q
Sbjct: 168 GGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQ 218
Score = 31.2 bits (71), Expect = 0.60
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
+ K D H APMPG+V V K GD++ +G L V+
Sbjct: 1071 RRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVI 1110
Score = 29.2 bits (66), Expect = 2.7
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
ET I AP G VK V K GDQI +G +L VV
Sbjct: 1116 ETTI-SAPFDGTVKEVLVKDGDQI-DGGDLLVV 1146
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 195 bits (497), Expect = 5e-60
Identities = 76/172 (44%), Positives = 116/172 (67%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K AD +CIG +++SY+N+ II A ADA+ PGYGFLSEN +FV +
Sbjct: 43 YLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNI 102
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP+ E + M DK ++K++ K AGV +IPG +G ++ + +IA++IGYPV++KA+
Sbjct: 103 KFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG+GMR+ ++ + + + EA ++FGD + +EKFI NPRHIE+Q
Sbjct: 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQ 214
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
Length = 472
Score = 185 bits (472), Expect = 4e-56
Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Query: 12 HVKLADEAVCIGP-PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
HVK ADEA IG P+A Y+N ++++ +T DA+HPGYGFLSENA E G
Sbjct: 41 HVKRADEAYSIGADPLAG--YLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERG 98
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP+AE IR MGDK E+++ +AGV + PG G + D D + A IGYPVM+KA
Sbjct: 99 IKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKA 158
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGG+G+R N+ +E + F EA +FG + +EK I NP+HIE+Q
Sbjct: 159 TSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQ 211
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 183 bits (465), Expect = 9e-53
Identities = 76/177 (42%), Positives = 116/177 (65%), Gaps = 7/177 (3%)
Query: 12 HVKLADEAVCIG-----PPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRL 66
H + ADE+ +G P+ A Y+++D+II + DA+HPGYGFLSEN+ F
Sbjct: 38 HRQKADESYQVGEGPDLGPIEA--YLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADAC 95
Query: 67 KEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPV 126
+ G++FIGP AE + +GDK+ ++ LA +AGV ++PG +G + ++ A IGYPV
Sbjct: 96 NKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPV 155
Query: 127 MIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+IKAS GGGG+GMR+ ++ + + F+ + EA A+FG+D + VEK I+ PRHIE+Q
Sbjct: 156 IIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQ 212
Score = 33.3 bits (76), Expect = 0.13
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
+ K D H APMPG++ V G + +G L V+
Sbjct: 1066 RRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVL 1105
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 165 bits (419), Expect = 2e-48
Identities = 74/173 (42%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HVK+ADEA IG + Y++V +I++ + ADA+HPGYGFLSEN F +++ G+
Sbjct: 41 HVKIADEAYRIGTD-PIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGI 99
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDA-DHCVEIARDIGYPVMIKA 130
+FIGP +E IR MG+K ++ L K+ G+ I+PG + ++ + AR IGYPV++KA
Sbjct: 100 IFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
S GGGG+G+R+ + +++ F+ +EA A F +D + +EK++ NPRHIE Q
Sbjct: 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQ 212
>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP
binding domain. Carbamoyl-phosphate synthase catalyzes
the ATP-dependent synthesis of carbamyl-phosphate from
glutamine or ammonia and bicarbonate. This important
enzyme initiates both the urea cycle and the
biosynthesis of arginine and/or pyrimidines. The
carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes
is a heterodimer of a small and large chain. The small
chain promotes the hydrolysis of glutamine to ammonia,
which is used by the large chain to synthesise carbamoyl
phosphate. See pfam00988. The small chain has a GATase
domain in the carboxyl terminus. See pfam00117. The ATP
binding domain (this one) has an ATP-grasp fold.
Length = 211
Score = 130 bits (329), Expect = 2e-37
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
DK+ K KEAGV +PG G + + + A++IGYPV+IKA+ GGGG GM IA N+
Sbjct: 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE 60
Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+E E F L+ EA A+FG+ ++LVEK +K P+HIE Q
Sbjct: 61 EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQ 98
>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain,
N-terminal domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. This important enzyme initiates both the
urea cycle and the biosynthesis of arginine and/or
pyrimidines. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain. The small chain promotes the hydrolysis of
glutamine to ammonia, which is used by the large chain
to synthesise carbamoyl phosphate. See pfam00988. The
small chain has a GATase domain in the carboxyl
terminus. See pfam00117.
Length = 108
Score = 109 bits (274), Expect = 2e-30
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
+ +P HV+LADEA +GP A++SY+N+++I+D + ADA+HPGYGFLSENA
Sbjct: 29 AVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPGYGFLSENA 88
Query: 61 SFVSRLKEEGVVFIGPTAE 79
F +E G+ FIGP+ E
Sbjct: 89 EFAEACEEAGITFIGPSPE 107
>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 63.6 bits (156), Expect = 1e-11
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI-ANN 144
DK +K+L AGV + G ++ A+ E A +IGYPV++K G G+G+ +
Sbjct: 214 DKELTKRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITT 271
Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
+E + A+ D ++VE++I
Sbjct: 272 REEIEAAY-----AVASKESSD-VIVERYIP 296
>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
Length = 304
Score = 60.5 bits (148), Expect = 7e-11
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 34/139 (24%)
Query: 63 VSRLKEEG--VVFI---GPTAE--CIRG----MG---------------DKLESKKLAKE 96
++LKE G VF G E I+G +G DKL +K + +
Sbjct: 49 AAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQA 108
Query: 97 AGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSS 156
AG+ P ++ + + +G P+++K + G G+ + E
Sbjct: 109 AGLPTPPW--IVLTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAAL---- 162
Query: 157 QEAAASFGDDRILVEKFIK 175
E A + DD +LVEK+IK
Sbjct: 163 -ELAFKY-DDEVLVEKYIK 179
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 58.9 bits (143), Expect = 5e-10
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 33 NVDKIIDAIRQTRADAVHPGYG---------FLSENASFVSRLKEEGVVFIGPTAECIRG 83
V+KII + R DA+ P +G L E+ L++ GV +G E I+
Sbjct: 72 AVEKII---EKERPDAILPTFGGQTALNLAVELEESGV----LEKYGVEVLGTPVEAIKK 124
Query: 84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN 143
D+ ++ KE G + I + + A++IGYPV+++ + GG G IA
Sbjct: 125 AEDRELFREAMKEIGEPVPESE--IAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAY 182
Query: 144 NDQEAIE----GFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
N +E E S +++LVEK + + IE
Sbjct: 183 NREELKEIAERALSASPI--------NQVLVEKSLAGWKEIE 216
Score = 51.5 bits (124), Expect = 2e-07
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
L+E GV +G + E I D+ + +L E G+ + VE A +IGY
Sbjct: 648 ALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASEIGY 705
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
PV+++ S GG+ M I N++E + EA + +L++K++++ +++
Sbjct: 706 PVLVRPSYVLGGRAMEIVYNEEELRRYLE----EAVEVSPEHPVLIDKYLEDAVEVDV 759
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 57.7 bits (140), Expect = 1e-09
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
L+E G+ +G + + I + D+ +L E G+ +PG D + A+ I
Sbjct: 647 AKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPG--LTATDEEEAFAFAKRI 704
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
GYPV+I+ S GG+GM + ++ L + A + IL+++FI
Sbjct: 705 GYPVLIRPSYVIGGQGMAVVYDEPA------LEAYLAENASQLYPILIDQFI 750
Score = 41.5 bits (98), Expect = 3e-04
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
L++ GV +G E I+ D+ + L KE G + + I+ + + A IG+P
Sbjct: 108 LEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV--PESEIVTSVEEALAFAEKIGFP 165
Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
++++ + GG G IA N +E + FK Q AS L+E+ I + IE
Sbjct: 166 IIVRPAYTLGGTGGGIAENLEELEQLFK---QGLQASPIHQ-CLLEESIAGWKEIE 217
>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
gene in MJ) [Amino acid transport and metabolism /
Nucleotide transport and metabolism].
Length = 400
Score = 55.0 bits (133), Expect = 7e-09
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 32 INVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV------FIGPTAECIRGMG 85
I + + I + R DA+ P G + + LKE+GV+ +G E I
Sbjct: 57 ITKEPVEKIIEKERPDAILPTLGGQTA-LNAALELKEKGVLEKYGVEVVGSDPEAIEIAE 115
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
DK K+ +E G+ + I + EIA +IGYPV++K S G GG G IA N+
Sbjct: 116 DKKLFKEAMREIGIPVPSR---IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNE 172
Query: 146 QEAIE----GFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+E E G + S + +L+E+ I + E
Sbjct: 173 EELEEIIEEGLRAS--------PVEEVLIEESIIGWKEFEY 205
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 53.9 bits (131), Expect = 2e-08
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 43/177 (24%)
Query: 15 LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYG---------FLSENASFVSR 65
+AD A I P I + + I + R DA+ P G L+E+
Sbjct: 60 MAD-ATYIEP-------ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGV---- 107
Query: 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP 125
L++ GV IG E I D+ K+ K+ G+ + GI + +E+A +IGYP
Sbjct: 108 LEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRS--GIAHSMEEALEVAEEIGYP 165
Query: 126 VMIKAS--AGGGGKGMRIANNDQEAIE----GFKLS--SQEAAASFGDDRILVEKFI 174
V+I+ S GG G G IA N++E E G LS ++ +L+E+ +
Sbjct: 166 VIIRPSFTLGGTGGG--IAYNEEELEEIVERGLDLSPVTE----------VLIEESL 210
Score = 52.4 bits (127), Expect = 7e-08
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
L+ GV +G + + I D+ KL ++ G+ P NG + +E+A +IGY
Sbjct: 648 ALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPP--NGTATSVEEALEVAEEIGY 705
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
PV+++ S GG+ M I +++E + EA D +L++KF++ +++
Sbjct: 706 PVLVRPSYVLGGRAMEIVYDEEELERYMR----EAVKVSPDHPVLIDKFLEGAIEVDV 759
>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin is
an insoluble storage polymer for carbon, nitrogen, and
energy, found in most Cyanobacteria. The polymer has a
backbone of L-aspartic acid, with most Asp side chain
carboxyl groups attached to L-arginine. The polymer is
made by this enzyme, cyanophycin synthetase, and
degraded by cyanophycinase. Heterologously expressed
cyanophycin synthetase in E. coli produces a closely
related, water-soluble polymer with some Arg replaced by
Lys. It is unclear whether enzymes that produce soluble
cyanophycin-like polymers in vivo in non-Cyanobacterial
species should be designated as cyanophycin synthetase
itself or as a related enzyme. This model makes the
designation as cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions [Cellular
processes, Biosynthesis of natural products].
Length = 864
Score = 52.9 bits (127), Expect = 5e-08
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%)
Query: 3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF 62
F QR ++ +GP AA + I +R + V GYG S
Sbjct: 139 FDLEQALQR-LRDLVADASLGPSTAAIVDEAEKRGIPYMRLSAGSLVQLGYG------SR 191
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
R++ A I DK +K++ +AGV + G +++ A+ E A+D+
Sbjct: 192 QKRIQATETDRTSAIAVEI--ACDKDLTKEILSDAGVPVPEG--TVVQSAEDAWEAAQDL 247
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
GYPV+IK G G+G+ I ++ IE S+ EAA ++VE+FI
Sbjct: 248 GYPVVIKPYDGNHGRGVTINILTRDEIE----SAYEAAVEESSG-VIVERFIT------- 295
Query: 183 QGTTYKFLIQTEKEFEYAKLLPP 205
G ++ L+ K A+ +P
Sbjct: 296 -GRDHRLLVVGGKVVAVAERVPA 317
>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
Provisional.
Length = 326
Score = 51.8 bits (125), Expect = 8e-08
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 15 LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGY----GFLSENASFVSRLKEEG 70
AD+ + P V +YI D+++D ++ + D + P L++N R +E G
Sbjct: 42 FADKFY-VVPKVTDPNYI--DRLLDICKKEKIDLLIPLIDPELPLLAQNRD---RFEEIG 95
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGF-NGIIRDADHCVEIARDIGYPVMIK 129
V + + E I DK + + KE G+ + + D + + +P+ +K
Sbjct: 96 VKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGE-LQFPLFVK 154
Query: 130 ASAGGGGKGMRIANNDQE 147
G G+ N+ +E
Sbjct: 155 PRDGSASIGVFKVNDKEE 172
>gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed.
Length = 333
Score = 51.7 bits (125), Expect = 8e-08
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDAD----HCVEIARDIGYPVMIKASAGGGGKG 138
M DK+ +K+L AG+ + P ++ D EI +G PV +K + G G
Sbjct: 121 SM-DKILTKRLLAAAGIPVAPYV--VLTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVG 177
Query: 139 MRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+ N++E + A + D ++LVE+ IK R IE
Sbjct: 178 ISKVKNEEELAAAL-----DLAFEY-DRKVLVEQGIK-GREIEC 214
>gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. This
model describes D-Ala--D-Ala ligase, an enzyme that
makes a required precursor of the bacterial cell wall.
It also describes some closely related proteins
responsible for resistance to glycopeptide antibiotics
such as vancomycin. The mechanism of glyopeptide
antibiotic resistance involves the production of
D-alanine-D-lactate (VanA and VanB families) or
D-alanine-D-serine (VanC). The seed alignment contains
only chromosomally encoded D-ala--D-ala ligases, but a
number of antibiotic resistance proteins score above the
trusted cutoff of this model [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 315
Score = 50.7 bits (122), Expect = 2e-07
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 24/167 (14%)
Query: 48 AVHPGYGFLSENASFVSRLKEEGVVFIGP--TAECIRGMGDKLESKKLAKEAGVNIIP-- 103
+H YG E+ + L+ G+ + G A + M DKL +K L K G+
Sbjct: 70 VLHGRYG---EDGTIQGLLELMGIPYTGSGVLASAL-SM-DKLLTKLLWKALGLPTPDYI 124
Query: 104 GFNGIIRDADH--CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAA 161
AD C ++A +G+PV++K + G G+ +++E A
Sbjct: 125 VLTQNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDE-----AF 179
Query: 162 SFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPK 208
+ D+ +LVE+FIK R +E+ ++ E+ +++P
Sbjct: 180 EY-DEEVLVEQFIK-GRELEVS------ILGNEEALPIIEIVPEIEG 218
>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR
synthetase) [Nucleotide transport and metabolism].
Length = 375
Score = 50.7 bits (122), Expect = 2e-07
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
A + +L VF P+ + +R D+L K+ +AG+ + P ++ A+
Sbjct: 74 PAEALEKLAASVKVF--PSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAA 129
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
A D+G+P ++K GG GKG +D + AA ++E+F+
Sbjct: 130 AADLGFPAVLKTRRGGYDGKGQWRIRSDADL-------ELRAAGLAEGGVPVLEEFVP 180
>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 49.1 bits (118), Expect = 6e-07
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 11/160 (6%)
Query: 16 ADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPG-YGFLSENASFVSRLKEEGVVFI 74
A EA + + + + ++ ++ D V G L A V L+ G+
Sbjct: 38 ALEAYLVNIEIDT----DHEALVAFAKEKNVDLVVVGPEAPLV--AGVVDALRAAGIPVF 91
Query: 75 GPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARDIGYPVMIKASAG 133
GPT + G K +K K+ G IP + D + + G P+++KA
Sbjct: 92 GPTKAAAQLEGSKAFAKDFMKKYG---IPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGL 148
Query: 134 GGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKF 173
GKG+ +A +EA + A R+++E+F
Sbjct: 149 AAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEF 188
>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, N5-carboxyaminoimidazole
ribonucleotide synthetase, which hydrolyzes ATP and
converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR.
In the presence of high concentrations of bicarbonate,
PurE is reported able to convert AIR to CAIR directly
and without ATP [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 352
Score = 47.7 bits (114), Expect = 2e-06
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
+L+ GV P+ + + + D+L K+ ++ G+ + P F +I+D + +++G+
Sbjct: 78 KLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPV-PPFL-VIKDEEELDAALQELGF 134
Query: 125 PVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
PV++KA GG G+G N+ + +AA GD +VE+F+
Sbjct: 135 PVVLKARTGGYDGRGQYRIRNEADL--------PQAAKELGDRECIVEEFVP 178
>gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed.
Length = 372
Score = 47.5 bits (114), Expect = 2e-06
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
A + L V GP + + D+L K+ + G+ + F ++ A+
Sbjct: 75 PAEALDALAARVPVPPGP--DALAIAQDRLTEKQFLDKLGIPV-APFA-VVDSAEDLEAA 130
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
D+G P ++K GG GKG + + ++ + A A G ++E+F+
Sbjct: 131 LADLGLPAVLKTRRGGYDGKGQWVIRSAEDL--------EAAWALLGSVPCILEEFV 179
>gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase. Alternate
name: glycinamide ribonucleotide synthetase (GARS). This
enzyme appears as a monofunctional protein in
prokaryotes but as part of a larger, multidomain protein
in eukaryotes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 422
Score = 46.9 bits (112), Expect = 3e-06
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI 122
V L+E G+ GPT E + G K +K K G+ D + ++
Sbjct: 81 VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV--FTDPEEAKSYIQEK 138
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFK-LSSQEAAASFGDDRILVEKFI 174
G P+++KA GKG+ +A ++EAI+ + + Q+ + +R+++E+F+
Sbjct: 139 GAPIVVKADGLAAGKGVIVAKTNEEAIKAVEDILEQKFGDAG--ERVVIEEFL 189
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 45.3 bits (108), Expect = 5e-06
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
DK ++L + AG+ + P F ++ D + A +IG+PV++K G G G+ ++
Sbjct: 4 DKALMRELLRAAGLPVPPFF--LVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSA 61
Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFI 174
E AA LVE++I
Sbjct: 62 AELEAALA---ALAAEVEDTREYLVEEYI 87
>gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp
enzymes [Cell envelope biogenesis, outer membrane].
Length = 317
Score = 44.6 bits (106), Expect = 2e-05
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 32 INVDKIIDAIRQTRADAVHP-GYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLES 90
+DK + +AD V P +G E+ + L+ G+ ++G G DK+ +
Sbjct: 48 WMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVT 107
Query: 91 KKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEA 148
K+L K G+ + P + E+ +G+P+ +K + G G N + +
Sbjct: 108 KRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDL 167
Query: 149 IEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+L+ + D +L E+ I R IE+
Sbjct: 168 QSALELAFKY------DRDVLREQGI-TGREIEV 194
>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain. This family does not
contain all known ATP-grasp domain members. This family
includes a diverse set of enzymes that possess
ATP-dependent carboxylate-amine ligase activity.
Length = 171
Score = 43.0 bits (102), Expect = 3e-05
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 109 IRDADHCVEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR 167
+ +E +++GYP ++KA GG GKG + ++ + +A G
Sbjct: 14 AESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADI--------PQAWEELGGGP 65
Query: 168 ILVEKFIK 175
++VE+F+
Sbjct: 66 VIVEEFVP 73
>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 44.3 bits (106), Expect = 3e-05
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
V + G+ GPT + G K +K G IP DA+ + +
Sbjct: 79 VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYG---IPTAAYETFTDAEEALAYLDE 135
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
G P+++KA GKG+ +A +EA FGD R+++E+F
Sbjct: 136 KGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNK--FGDAGARVVIEEF 187
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 43.1 bits (102), Expect = 5e-05
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 62 FVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE-IAR 120
F+ + +GV I + IR +KL + +L +AG+ + P I RD D E +A
Sbjct: 96 FLRLAERKGVPVIND-PQSIRRCRNKLYTTQLLAKAGIPVPP--TLITRDPDEAAEFVAE 152
Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPR 178
+G+PV++K G GG+G+ + + + LS E G I+V+++I +
Sbjct: 153 HLGFPVVLKPLDGSGGRGVFLVEDADPEL----LSLLETLTQEGRKLIIVQEYIPKAK 206
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing carboxylation,
decarboxylation, or transcarboxylation. During this
process, biotin is covalently attached to a specific
lysine.
Length = 67
Score = 39.7 bits (94), Expect = 6e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ APMPG V V K GD++ GQ L V+
Sbjct: 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVL 30
Score = 33.9 bits (79), Expect = 0.007
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ AP+ G+VK + K GDQ+ GQ L V+
Sbjct: 39 VTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This
family represents the C-terminal, catalytic domain of
the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
D-Alanine is one of the central molecules of the
cross-linking step of peptidoglycan assembly. There are
three enzymes involved in the D-alanine branch of
peptidoglycan biosynthesis: the pyridoxal
phosphate-dependent D-alanine racemase (Alr), the
ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Length = 201
Score = 41.8 bits (99), Expect = 8e-05
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 93 LAKEAGVNIIPGFNGIIRDADH---CVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
L K AG+ + P F + R+ ++ +GYPV +K + G G+ + +E
Sbjct: 1 LLKAAGIPVAP-FIVLTREDWVLATKEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQ 59
Query: 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+ + Q D+++L+E+ I+ R IE
Sbjct: 60 SAIEEAFQY------DNKVLIEEAIEG-REIEC 85
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 42.5 bits (100), Expect = 1e-04
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 37/169 (21%)
Query: 24 PPVAAQSYIN------VDKIIDAIRQTRADAVHPGYG---------FLSENASFVSRLKE 68
P A ++YI V+++I + R DA+ P G L+E+ L++
Sbjct: 74 PETADRTYIAPMTPELVEQVIA---KERPDALLPTMGGQTALNLAVALAESGI----LEK 126
Query: 69 EGVVFIGPTAECIRGMGDKLESKKLAKEA----GVNIIPGFNGIIRDADHCVEIARDIG- 123
GV IG + I K E ++L K+A G+ P +GI D C EIA DIG
Sbjct: 127 YGVELIGAKLDAI----KKAEDRELFKQAMEKIGLKTPP--SGIATTLDECFEIAEDIGE 180
Query: 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEK 172
+P++I+ + GG G IA N +E F+ + A+ ++LVEK
Sbjct: 181 FPLIIRPAFTLGGTGGGIAYNKEE----FETICKAGLAASITSQVLVEK 225
Score = 42.1 bits (99), Expect = 2e-04
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 75 GPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG 134
G + + I D+ + E + G GI R + IA+ IGYPV+++ S
Sbjct: 691 GTSPDSIDAAEDRERFNAILNELKIEQPKG--GIARSEADALAIAKRIGYPVVVRPSYVL 748
Query: 135 GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR-ILVEKFIKNPRHIEI 182
GG+ M I +D + E A +R +LV+K++ + I++
Sbjct: 749 GGRAMEIVYSDDKLKTYL-----ETAVEVDPERPVLVDKYLSDATEIDV 792
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 40.6 bits (95), Expect = 5e-04
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 58 ENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE 117
E AS V+R + E IR DK + ++ G+++ P + + A ++
Sbjct: 83 EVASEVAR----RLGLPAANTEAIRTCRDKKRLARTLRDHGIDV-PRTHALALRAV-ALD 136
Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP 177
+ YPV++K G G G+R+ + EA A G LV+ +++
Sbjct: 137 ALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHC-----AALRRAGTRAALVQAYVEGD 191
Query: 178 ----------RHIEIQGTTYKFL 190
R ++ G T K L
Sbjct: 192 EYSVETLTVARGHQVLGITRKHL 214
>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
(A) domain. Phosphoribosylglycinamide synthetase
catalyzes the second step in the de novo biosynthesis of
purine. The reaction catalyzed by
Phosphoribosylglycinamide synthetase is the ATP-
dependent addition of 5-phosphoribosylamine to glycine
to form 5'phosphoribosylglycinamide. This domain is
related to the ATP-grasp domain of biotin
carboxylase/carbamoyl phosphate synthetase (see
pfam02786).
Length = 193
Score = 38.8 bits (91), Expect = 9e-04
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 85 GDKLESKKLAKEAGVNIIPGFN-GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN 143
G K +K K G IP D + R+ G+P ++KA GKG+ +A
Sbjct: 1 GSKSFAKDFMKRHG---IPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAM 57
Query: 144 NDQEAIEGFKLSSQEAAASFGDDRILVEKF 173
+++EAI+ ++ + +++E+F
Sbjct: 58 DNEEAIKAVDEILEQKKFGEAGEPVVIEEF 87
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 38.5 bits (90), Expect = 0.001
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 60 ASFVSRLKEE-GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
A + +RL E GV I + I GDK+ + +AGV P + D + +++
Sbjct: 61 ALYSARLLEALGVPVINSS-HVIEACGDKIFTYLKLAKAGVPT-PR-TYLAFDREAALKL 117
Query: 119 ARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNP- 177
A +GYPV++K G G+ + D++ +E L +E ++++I P
Sbjct: 118 AEALGYPVVLKPVIGSWGR-LVALIRDKDELESL-LEHKEVLGGSQHKLFYIQEYINKPG 175
Query: 178 RHIEI 182
R I +
Sbjct: 176 RDIRV 180
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKAS--AGGGGK--GMRIAN 143
++K+L + G+ + PG+ + + E A+++G PV++KA AGG GK G+++A
Sbjct: 7 QAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAK 64
Query: 144 NDQEAIE 150
+ +EA E
Sbjct: 65 SPEEAKE 71
>gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain. No functional
information or experimental verification of function is
known in this family. This family appears to be an
ATP-grasp domain (Pers. obs. A Bateman).
Length = 159
Score = 35.8 bits (83), Expect = 0.006
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN 144
DKL++ K K AGV + P E + ++K G GG+G+R N
Sbjct: 1 SDKLKTYKALKNAGVPV-PT--------TLSAEEPTEEEKKYIVKPRDGCGGEGVRFVEN 51
Query: 145 DQEAIEGF 152
+E E
Sbjct: 52 GREDEEFI 59
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 37.1 bits (87), Expect = 0.006
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
+PMPG V V K GD++ G + V+
Sbjct: 527 SPMPGTVVKVKVKEGDKVKAGDTVLVL 553
>gnl|CDD|222215 pfam13549, ATP-grasp_5, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 222
Score = 35.5 bits (83), Expect = 0.013
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 23/99 (23%)
Query: 89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS---------AGGGGKGM 139
E+K L G+ ++P + R + V A +IGYPV++K GG
Sbjct: 14 EAKALLAAYGIPVVPT--RLARSPEEAVAAAEEIGYPVVLKIVSPDILHKSDVGG----- 66
Query: 140 RIA---NNDQEAIEGFKLSSQEAAASFGDDRI---LVEK 172
+ + +E + + D RI LV+
Sbjct: 67 -VRLNLKSAEEVRAAAEEILERVRRYRPDARIEGVLVQP 104
>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain
is found in the ribosomal S6 modification enzyme RimK.
Length = 190
Score = 35.1 bits (81), Expect = 0.014
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRIAN 143
DK +S +L + G+ + P G+ + + I G+PV++K+ G G G+ +A
Sbjct: 2 RDKAKSHQLLAKHGIPV-PNT-GLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAE 59
Query: 144 NDQEA---IEGFKLSSQEAAASFGDDRILVEKFIKNP 177
++Q +E FK + ILV++FI
Sbjct: 60 DEQSLEQLLEAFKWLKNQ---------ILVQEFIAEA 87
>gnl|CDD|180605 PRK06524, PRK06524, biotin carboxylase-like protein; Validated.
Length = 493
Score = 35.9 bits (83), Expect = 0.017
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 67 KEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARD--IGY 124
++ G+ + P AE + K+ + +LA EAGV +P G + D +A +G
Sbjct: 123 RQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLGD 182
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG 184
++++ G G ++ + A G I V K I+N + I+
Sbjct: 183 DLVVQTPYGDSGSTTFFVRGQRDW-------DKYAGGIVGQPEIKVMKRIRN-VEVCIEA 234
Query: 185 T 185
Sbjct: 235 C 235
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 33.5 bits (77), Expect = 0.039
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 200 AKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
A P T++ +PM G V +VGD + GQ L ++
Sbjct: 59 APAPAPAAAAGGTQVT-SPMVGTVYKPFVEVGDTVKAGQTLAII 101
>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
Length = 364
Score = 34.0 bits (78), Expect = 0.061
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 117 EIARDI----GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEK 172
I +DI GYPV++K + G G+ +A N+ + IE +EA D +++EK
Sbjct: 161 GIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQ-IEKC---IEEAFKY--DLTVVIEK 214
Query: 173 FIKNPRHIE 181
FI+ R IE
Sbjct: 215 FIE-AREIE 222
>gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide
formyltransferase (GAR transformylase) [Nucleotide
transport and metabolism].
Length = 394
Score = 33.9 bits (78), Expect = 0.064
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
IG+P ++K GKG + + ++ + ++ + Q G R++VE+F+K
Sbjct: 143 AAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSG--RVIVEEFVK 199
>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase.
Length = 434
Score = 33.6 bits (77), Expect = 0.074
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 60 ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
A L + G+ GP+AE G K K L + I D +
Sbjct: 76 AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDK--YKIPTAKYETFTDPAAAKKYI 133
Query: 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKFI 174
++ G P+++KA GKG+ +A +EA E + S +FG ++VE+F+
Sbjct: 134 KEQGAPIVVKADGLAAGKGVVVAMTLEEAYEA--VDSMLVKGAFGSAGSEVVVEEFL 188
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
Length = 577
Score = 33.1 bits (76), Expect = 0.12
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
+ + L+++GV + P + IR + DK K + G+ + P F I D E
Sbjct: 95 DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPL-PEFMEI--DDLESAEK 150
Query: 119 ARDI-GYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFG--DDRILVEKFI 174
A D+ GYP+M+K+ G+G +A +++ LSS A A+ G + + EK+
Sbjct: 151 AGDLFGYPLMLKSRRLAYDGRGNAVAKTEED------LSS--AVAALGGFERGLYAEKWA 202
>gnl|CDD|238476 cd00946, FBP_aldolase_IIA, Class II Type A,
Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme
catalyses the zinc-dependent, reversible aldol
condensation of dihydroxyacetone phosphate with
glyceraldehyde-3-phosphate to form
fructose-1,6-bisphosphate. FBP aldolase is homodimeric
and used in gluconeogenesis and glycolysis. The type A
and type B Class II FBPA's differ in the presence and
absence of distinct indels in the sequence that result
in differing loop lengths in the structures.
Length = 345
Score = 32.7 bits (75), Expect = 0.13
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 94 AKEAGVNIIPGFNGIIRD-ADHCVEIARDIGYPVMIKASAGGG----GKGMRIANNDQEA 148
AKE G IP N + +E ARD P++I+ S GG GKG + N Q+A
Sbjct: 11 AKENGF-AIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKG--LKNEKQKA 67
>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2.
This enzyme is an alternative to PurN (TIGR00639)
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 380
Score = 32.8 bits (75), Expect = 0.14
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
E IGYP ++K GKG + ++ + ++ + + A G R++VE+FI
Sbjct: 130 EAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAG--RVIVEEFID 186
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 32.3 bits (74), Expect = 0.18
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAE--C 80
AA + + + + + R L+ G+ + A
Sbjct: 250 LQAAAAAALSDPLLVASELEEMRQ-------RIKERRDYLRDGLEAAGLSVLPSQAGFFL 302
Query: 81 IRGMGDKLE---SKKLAKEAGVNIIPG 104
+ G+ + ++ L +E GV + PG
Sbjct: 303 LTGLDPEAALALAQVLLEEVGVYVTPG 329
>gnl|CDD|234442 TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG.
This family of FMNH2-dependent members of the
luciferase-like monooxygenase (LLM) family includes
SfnG, a monooxygenase that converts dimethylsulphone
(DMSO2) to methanesulphonate. This step can be followed
immediately by methanesulfonate sulfonatase (an
alkanesulfonate monooxygenase - see TIGR03565) for the
FMNH2-dependent conversion an inorganic form [Central
intermediary metabolism, Sulfur metabolism].
Length = 350
Score = 32.0 bits (73), Expect = 0.24
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 21/80 (26%)
Query: 89 ESKKLAKEAGVNIIPGFNG--IIRDA-DHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
+ + LA+E G + G N I+RD E R+I IA D
Sbjct: 216 DVRALARENGRTVKFGLNAFVIVRDTEKEARETLREI------------------IAKAD 257
Query: 146 QEAIEGFKLSSQEAAASFGD 165
+EA+EGF + ++A S +
Sbjct: 258 KEAVEGFGAAVKQAGNSSPE 277
>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase;
Provisional.
Length = 426
Score = 31.8 bits (72), Expect = 0.29
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 60 ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIA 119
A F E G+ GP + C + G K +K L KEA I + +
Sbjct: 82 AGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEA--KIPTASYKTFTEYSSSLSYL 139
Query: 120 RDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
P++IKA GKG+ +A + A K ++ +++++E+F++
Sbjct: 140 ESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195
>gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase;
Provisional.
Length = 486
Score = 31.5 bits (72), Expect = 0.43
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 66 LKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIG 123
L+EEG G +++C R K+ +++L + IPG + D + + G
Sbjct: 89 LREEGFPVFGASSKCARIEKSKVWARELMWKYS---IPGRLRYKVFYDVEEAAKFIEYGG 145
Query: 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFK----------LSSQEAAASFGDDRILVE 171
V IK + GGKG+++ + Q + K + A + +ILVE
Sbjct: 146 -SVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVE 202
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 30.2 bits (68), Expect = 0.43
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
+PMPG + V VGDQ+ E Q L ++
Sbjct: 66 SPMPGTILKVLVAVGDQVTENQPLLIL 92
>gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional.
Length = 347
Score = 31.0 bits (70), Expect = 0.52
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 39 DAIRQTRADAVHPG-YGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEA 97
I Q AD G +G E+ L G+ + G DK + ++ ++
Sbjct: 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQS 141
Query: 98 GVNIIPGFN----GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFK 153
G + P F + + +G+P +K GG N ++
Sbjct: 142 GQKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQ------ 195
Query: 154 LSSQEAAASFGDDRILVEKFI 174
L + A D +++ + F+
Sbjct: 196 LMTLLALIFESDSKVMSQSFL 216
>gnl|CDD|224734 COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp
superfamily) [General function prediction only].
Length = 307
Score = 30.9 bits (70), Expect = 0.54
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
R+ EE V +G + IR DK + K ++A V P +
Sbjct: 93 RIYEEYVENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE------------WAEEPK 139
Query: 125 PVMIKASAGGGGKGMRIANND------QEAIEGFKLS 155
+IK + G GG+G+ + QE IEG LS
Sbjct: 140 KYVIKPADGCGGEGILFGRDFPDIEIAQEFIEGEHLS 176
>gnl|CDD|237507 PRK13790, PRK13790, phosphoribosylamine--glycine ligase;
Provisional.
Length = 379
Score = 30.9 bits (70), Expect = 0.63
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP--GFNGIIRDADHCVEIARDI 122
L+ G GP + + G KL +KK+ ++ IP + + R D I +
Sbjct: 46 ILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYN---IPTADYKEVERKKDALTYI-ENC 101
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFK 153
PV++K GKG+ IA+ + A +
Sbjct: 102 ELPVVVKKDGLAAGKGVIIADTIEAARSAIE 132
>gnl|CDD|222734 pfam14397, ATPgrasp_ST, Sugar-transfer associated ATP-grasp. A
member of the ATP-grasp fold predicted to be involved in
the biosynthesis of cell surface polysaccharides.
Length = 284
Score = 30.4 bits (69), Expect = 0.74
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 123 GYPVMIKASAGGGGKGMRIAN-NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKN 176
P+ +K G GGKG+ +D + E KL + + +V++ I+
Sbjct: 70 HKPLFVKPVDGMGGKGIEKLELDDTVSKER-KLIALYKLLEDNEKGFVVQERIRQ 123
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine residue
binds biotin in one group and lipoic acid in the other.
Note that the HMM does not currently recognise the
Glycine cleavage system H proteins.
Length = 73
Score = 28.3 bits (64), Expect = 0.87
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 217 APMPGLV-----KSVNCKVGDQIMEGQELCVV 243
+PM G KVGD++ GQ LC V
Sbjct: 5 SPMIGESVKEGTAEWLVKVGDKVKAGQVLCEV 36
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 30.2 bits (69), Expect = 0.91
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 21/89 (23%)
Query: 46 ADAVHPGYGFLSENASFVSRLKEEG------VVFIGPTAECIRGMGDKLESKKLAKEAGV 99
D G + + RL E+G +V IG IRG + E + A+E GV
Sbjct: 117 LDTRDTDGGGELSHGTPFRRLLEDGNVDGENIVQIG-----IRGFWNSPEYVEYAREQGV 171
Query: 100 NIIP-------GFNGIIRDADHCVEIARD 121
+I G + +I +A +EIA D
Sbjct: 172 TVITMRDVRERGLDAVIEEA---LEIASD 197
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 30.0 bits (68), Expect = 0.91
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 85 GDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN 144
GDK + +L +AG+ P G+ + +++ +IG+PV++K G G+ + +A +
Sbjct: 87 GDKFLTSQLLAKAGL-PQPR-TGLAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARD 144
Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
Q A + Q + V+++IK P +I
Sbjct: 145 KQAAETLLEHFEQLNGPQ---NLFYVQEYIKKPGGRDI 179
>gnl|CDD|238295 cd00530, PTE, Phosphotriesterase (PTE) catalyzes the hydrolysis of
organophosphate nerve agents, including the chemical
warfare agents VX, soman, and sarin as well as the
insecticide paraoxon. PTE exists as a homodimer with one
active site per monomer. The active site is located next
to a binuclear metal center, at the C-terminal end of a
TIM alpha- beta barrel motif. The native enzyme
contains two zinc ions at the active site however these
can be replaced with other metals such as cobalt,
cadmium, nickel or manganese and the enzyme remains
active.
Length = 293
Score = 29.9 bits (68), Expect = 1.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 34 VDKII---DAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGM 84
D+++ D R++ + + G+G+ F+ RL+E GV T E + +
Sbjct: 236 GDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPRLRERGV-----TEEQLDTI 284
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Length = 809
Score = 29.8 bits (67), Expect = 1.3
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 86 DKLESKKLAKEAGVNIIP----GFNGIIRDADHCV-EIARDIGYPVMIKASAGGGGKGMR 140
DK+ +K+ A + GV ++P G R+ + C+ I +P+ +K + G G+
Sbjct: 568 DKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSSIGVF 627
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+N +E L + + A D + VE+ R IE+
Sbjct: 628 EVHNVEE------LRDKISEAFLYDTDVFVEESRLGSREIEV 663
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional.
Length = 483
Score = 29.5 bits (66), Expect = 1.9
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 17 DEAVCI-GPPVAAQSYINVDKIIDAIRQT 44
D A+ I GP V+ + Y+N ++ IDA+ QT
Sbjct: 444 DLAILIHGPKVSREFYLNTEEFIDAVAQT 472
>gnl|CDD|222736 pfam14399, BtrH, A predicted NlpC/p60-like peptidase. Members of
this family are often found in the gene neighborhood, or
fused to, non-ribosomal peptide synthetases. They are
predicted to function as trans-peptidases in peptide
metabolite biosynthesis.
Length = 329
Score = 28.5 bits (64), Expect = 2.8
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 117 EIARDIGYPVMIKASAGGGGKGMR--------------IANNDQEAIEGFKLSSQEAAAS 162
++ + + + AG GG G R EA E + E AA
Sbjct: 231 DLDHLLAFLFRLIEKAGTGGGGFRDLYADFLQEAAELLDDPALAEAAELME----EIAAL 286
Query: 163 FGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLL 203
+ + L+ K K+ +++ K E E E + L
Sbjct: 287 WREVAALLAKAGKSKDRADLEEAADKLREIAELERELMEAL 327
>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
Length = 299
Score = 28.6 bits (64), Expect = 2.9
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
+GYP ++K G G+ I +D+E K E +G ++V+++I R +
Sbjct: 124 LGYPCVVKPRREGSSIGVFICESDEEFQHALK----EDLPRYGS--VIVQEYIPG-REMT 176
Query: 182 IQGTTYKFLIQTEKEFEYAKLLPPKPK 208
+ +++TEK FE +L +PK
Sbjct: 177 VS------ILETEKGFEVLPILELRPK 197
>gnl|CDD|226433 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 28.7 bits (64), Expect = 2.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 119 ARDIGYPVMIKASAGGG------GKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEK 172
++ +PV++K GG K A+N E KL+ A G D ++V++
Sbjct: 143 VDELTFPVILKPGMGGSVHFEARAKAFTAADN-----EEMKLALHRAYEEIGPDNVVVQE 197
Query: 173 FI 174
FI
Sbjct: 198 FI 199
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 27.9 bits (62), Expect = 3.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 205 PKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
P P ++ APMPG + + + G Q+ GQ L ++
Sbjct: 77 PAPASAGENVVTAPMPGKILRILVREGQQVKVGQGLLIL 115
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 28.7 bits (64), Expect = 3.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVVG 244
+ G++K + KVGD + G + +
Sbjct: 47 SSAAGIIKEIKVKVGDTLPVGGVIATLE 74
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 28.2 bits (64), Expect = 3.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 98 GVNIIPGF-----NGIIRDADHCVEIARDIGYPV 126
GV P GI RD + +A+D+G V
Sbjct: 205 GVLYTPPLTSSILEGITRDT--VITLAKDLGIEV 236
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 79 ECIRGMGDKLESKKLAKEAGVNIIPG 104
E R +G SK+L EA V + PG
Sbjct: 340 EPARHLGSLEFSKQLLTEAKVAVSPG 365
>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy
production and conversion].
Length = 472
Score = 28.1 bits (63), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 198 EYAKLLPPKPKLDETKILHAPMPG 221
+Y LL P+ K + +IL +PG
Sbjct: 278 KYKGLLEPQAKGVDPRILIYQVPG 301
>gnl|CDD|237329 PRK13278, purP,
5-formaminoimidazole-4-carboxamide-1-(beta)-D-
ribofuranosyl 5'-monophosphate synthetase; Provisional.
Length = 358
Score = 27.9 bits (63), Expect = 4.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEG 151
KL +EAG+ I P + DI PV++K GG+G IA + +E E
Sbjct: 129 KLLEEAGIRI-PR---KYESPE-------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEK 177
Query: 152 FK 153
Sbjct: 178 ID 179
>gnl|CDD|171560 PRK12527, PRK12527, RNA polymerase sigma factor; Reviewed.
Length = 159
Score = 27.0 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 149 IEGFKLSSQEAAASFGDDRILVEKFIKN 176
+EG LS Q+ A G R LVEK I N
Sbjct: 119 LEG--LSHQQIAEHLGISRSLVEKHIVN 144
>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
Length = 475
Score = 27.8 bits (62), Expect = 6.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
IR + D L +LA++ GV ++PG + + D +E+
Sbjct: 424 IRLIQDHLL--RLARQEGVPVLPGED-LDESIDKALEV 458
>gnl|CDD|188424 TIGR03909, pyrrolys_PylC, pyrrolysine biosynthesis protein PylC.
This protein is PylC, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 374
Score = 27.5 bits (61), Expect = 6.8
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH- 179
G+P +K S G +G+ I N+ +E E KL + D + E++++ P +
Sbjct: 122 GCGFPYFVKPSCESGSEGVYIINDRRELNELLKLGNL--------DNWVKEEYLEGPSYS 173
Query: 180 IEIQGTTYKFLIQTEKEFE 198
IE+ G + + E E
Sbjct: 174 IEVIGDGGNYQVFQITELE 192
>gnl|CDD|222715 pfam14371, DUF4412, Domain of unknown function (DUF4412). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria, archaea and
eukaryotes, and is typically between 75 and 104 amino
acids in length.
Length = 74
Score = 25.7 bits (57), Expect = 6.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 118 IARDIGYPVMIKASAGGGGKGMRIAN 143
+ D+G+P+ ++ GGG M + N
Sbjct: 31 VTPDLGFPLKTESIDGGGTVTMELVN 56
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 27.7 bits (62), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 57 SENASFVSRLKEEGVVFIGPT 77
+A V+RL+E G V +G T
Sbjct: 104 DVDAPAVARLREAGAVLLGKT 124
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 27.5 bits (62), Expect = 7.2
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 89 ESKKLAKEAGVNIIPGFN--------GIIRDADHCVEIARDIGYPVMIKASAGGGG 136
++++LA+E G+ I F+ G I +EI + + GGGG
Sbjct: 127 KARELAEEEGLTFIHPFDDPDVIAGQGTI-----GLEILEQVPDLDAVFVPVGGGG 177
>gnl|CDD|236454 PRK09288, purT, phosphoribosylglycinamide formyltransferase 2;
Validated.
Length = 395
Score = 27.4 bits (62), Expect = 7.4
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 117 EIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
+IGYP ++K GKG + + ++ + ++ + + G R++VE+FI
Sbjct: 143 AAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRG--GAGRVIVEEFID 199
>gnl|CDD|222128 pfam13437, HlyD_3, HlyD family secretion protein. This is a family
of largely bacterial haemolysin translocator HlyD
proteins.
Length = 102
Score = 26.2 bits (58), Expect = 7.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 214 ILHAPMPGLVKSVNCKVGDQIMEGQEL 240
++ AP+ G+V ++ + G + G L
Sbjct: 1 VIRAPIDGVVAELDVEEGQVVAAGDPL 27
>gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional.
Length = 1638
Score = 27.5 bits (61), Expect = 8.6
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 126 VMIKASAGGGGKGMRIANNDQEAIEGFKL-SSQEAAASFGDDRILVEKFIKNP--RHIEI 182
+I ASA G KG R+ + + GF++ S + A + D + EK IK ++
Sbjct: 271 CLIVASATGKAKGDRVKLYRE--LLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKK 328
Query: 183 QGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQ 238
G + ++ E A+ + D KI LV + N K D EG+
Sbjct: 329 LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKI------ELVSAKNKKGFDLFEEGE 378
>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional.
Length = 324
Score = 26.9 bits (60), Expect = 9.5
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 21/58 (36%)
Query: 166 DRILVEKF---IKNPRHIEIQGTTYKFLIQTEKE-------FEYAKLLPPKPKLDETK 213
D ILVEKF IK+P I TT LI+T F+Y P PKLD K
Sbjct: 100 DFILVEKFAYGIKDP----ITQTT---LIETGHPKRGDIVVFKY----PEDPKLDYIK 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.406
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,789,368
Number of extensions: 1243429
Number of successful extensions: 1557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 134
Length of query: 246
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 152
Effective length of database: 6,768,326
Effective search space: 1028785552
Effective search space used: 1028785552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)