RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10619
(246 letters)
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 318 bits (818), Expect = e-105
Identities = 114/173 (65%), Positives = 135/173 (78%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
HV++ADEAV IGPP A QSYI +DK++ AIR T A AVHPGYGFLSEN+ F L+ EG
Sbjct: 40 LHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEG 99
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
V+F+GP I MGDK+ SKK+A+EA V+ +PG+ G+I DAD V+I+ IGYPVMIKA
Sbjct: 100 VIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKA 159
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
SAGGGGKGMRIA NDQEA EGF+ S EAA SFGDDRI +EKF+ PRHIEIQ
Sbjct: 160 SAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212
Score = 68.1 bits (167), Expect = 2e-13
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 123 GYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPR--HI 180
G + +A G + + + + A D LV K K I
Sbjct: 521 GADFPVTIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKISGGFRI 580
Query: 181 EIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQEL 240
+G K ++T ++ E A+L+P K D +K+L PMPGL+ V+ +VG ++ EGQ L
Sbjct: 581 RTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQAL 640
Query: 241 CVV 243
C +
Sbjct: 641 CTI 643
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 304 bits (782), Expect = e-100
Identities = 84/173 (48%), Positives = 114/173 (65%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
RHV AD AV +G A SY+ D+II A + A A+HPGYGFLSENA F +E G
Sbjct: 66 RHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAG 125
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
++F+GP A I MG K +K L +EAGV ++PG++G +D + A IGYPV++KA
Sbjct: 126 LLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKA 185
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+AGGGGKGM++ + E E + +EA A+FGD R+LVEK++ PRH+EIQ
Sbjct: 186 AAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQ 238
Score = 50.7 bits (122), Expect = 1e-07
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 179 HIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQ 238
+E +G + + L APM G + V + G + G
Sbjct: 576 FLEWEGELLAIEAVD-------PIAEAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGA 628
Query: 239 ELCVV 243
L V+
Sbjct: 629 TLVVL 633
Score = 38.0 bits (89), Expect = 0.002
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ AP G+VK++ C G+ + EG L +
Sbjct: 641 SIRAPHAGVVKALYCSEGELVEEGTPLVEL 670
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 291 bits (747), Expect = 1e-97
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
H ++ADEA C+GP ++ SY+N+ I+ T D VHPGYGFL+ENA F + +
Sbjct: 40 HTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQL 99
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP+ + I+ MG K +K +A V ++PG +G+++D +IA+ IGYPV+IKA+
Sbjct: 100 KFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKAT 159
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGGKG+R+A +++E GF+++ QEA +FG+ + +EKFI+N RHIEIQ
Sbjct: 160 AGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQ 211
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 290 bits (746), Expect = 2e-97
Identities = 75/172 (43%), Positives = 120/172 (69%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
++K AD ++CIG +++SY+N+ II A ADA+ PGYGFLSEN +FV + +
Sbjct: 45 YLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNI 104
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP+ E + M DK ++K++ + AGV +IPG +G + A+ ++A++IGYPV++KA+
Sbjct: 105 KFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAA 164
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG+GMR+ N+++ + + + EA +FGD + +EK+I+NPRHIE+Q
Sbjct: 165 AGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQ 216
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 290 bits (745), Expect = 3e-97
Identities = 83/172 (48%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HVKLADEA IG +Y+N +II+ + ADA+HPGYGFL+ENA F +E G+
Sbjct: 41 HVKLADEAYMIGTD-PLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGI 99
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
FIGP + I MGDK SK++ K+AGV ++PG +G+++ + +AR+IGYPV++KA+
Sbjct: 100 TFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKAT 159
Query: 132 AGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AGGGG+G+RI N++E ++ ++ +S+EA +FG +L+EKFI+NP+HIE Q
Sbjct: 160 AGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQ 211
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 305 bits (784), Expect = 1e-96
Identities = 71/173 (41%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+HV AD +V + AA++Y+++DKII+A ++T A A+ PGYGFLSENA F R +E
Sbjct: 69 QHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQEN 128
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+VF+GP+ + IR +G K ++++A+ A V ++PG G+I+DA E+A+ + YPVM+K+
Sbjct: 129 IVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKS 187
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+AGGGG G++ +++ + F+ + + FGD + +E+F+ N RH+EIQ
Sbjct: 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQ 240
Score = 39.6 bits (93), Expect = 8e-04
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 210 DETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
D+ ++L++ G VGD + G + ++
Sbjct: 1165 DDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIII 1198
Score = 36.5 bits (85), Expect = 0.006
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
++ A G V + K GD + G + V+
Sbjct: 1206 VVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 284 bits (729), Expect = 7e-95
Identities = 88/173 (50%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGV 71
HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++ G
Sbjct: 41 HVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGF 100
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIR-DADHCVEIARDIGYPVMIKA 130
+FIGP AE IR MGDK+ + K+AGV +PG +G + D D IA+ IGYPV+IKA
Sbjct: 101 IFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA 160
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
S GGGG+GMR+ D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 161 SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 213
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 270 bits (692), Expect = 4e-89
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGP-PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADEA +G ++Y++++ II+ + DA+HPGYGFLSEN F R +EEG
Sbjct: 45 HRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEG 104
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
++FIGP + GDK++++ A AG+ +IPG +G + + V A GYP++IKA
Sbjct: 105 IIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKA 164
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+ GGGG+GMRI + E E F+ + EA A+FG D + VEK I+NP+HIE+Q
Sbjct: 165 ALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQ 217
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 269 bits (690), Expect = 6e-88
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 31/200 (15%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + G
Sbjct: 89 EYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNG 148
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG-------------------------- 104
V F+GP +E + +GDK+ S +A+ V +P
Sbjct: 149 VAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDV 208
Query: 105 -FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF 163
G ++D D +E A IG+P+MIKAS GGGGKG+R A + ++ F ++ +
Sbjct: 209 YDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILF----RQVQSEI 264
Query: 164 GDDRILVEKFIKNPRHIEIQ 183
I + K ++ RH+E+Q
Sbjct: 265 PGSPIFLMKLAQHARHLEVQ 284
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 270 bits (693), Expect = 6e-88
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 31/200 (15%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
++K+AD V + +Y NV+ I+D ++ AV G+G SEN L + G
Sbjct: 105 EYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNG 164
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG-------------------------- 104
V F+GP +E + +GDK+ S +A+ V +P
Sbjct: 165 VAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDV 224
Query: 105 -FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASF 163
G ++D D +E A IG+P+MIKAS GGGGKG+R A + ++ F ++ +
Sbjct: 225 YDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILF----RQVQSEI 280
Query: 164 GDDRILVEKFIKNPRHIEIQ 183
I + K ++ RH+E+Q
Sbjct: 281 PGSPIFLMKLAQHARHLEVQ 300
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 264 bits (678), Expect = 5e-86
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 30/198 (15%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE--E 69
++++AD+ + + +Y NVD I+D + DAV G+G SEN +L +
Sbjct: 97 YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 156
Query: 70 GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG------------------------F 105
V+FIGP +R +GDK+ S +A+ A V IP
Sbjct: 157 KVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQ 216
Query: 106 NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD 165
G + ++ A+ IG+PVMIKAS GGGGKG+R +++ I + +AA
Sbjct: 217 KGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALY----HQAANEIPG 272
Query: 166 DRILVEKFIKNPRHIEIQ 183
I + K RH+E+Q
Sbjct: 273 SPIFIMKLAGRARHLEVQ 290
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 267 bits (684), Expect = 6e-83
Identities = 77/173 (44%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 12 HVKLADEAVCIGPPVA-AQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
H ADE+ +G + A+SY+N+++IID +Q DA+HPGYGFLSEN F R EEG
Sbjct: 43 HRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEG 102
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
+ FIGP E + GDK++++ A +A + +IPG +G I+ + E A + G+P+MIKA
Sbjct: 103 IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
++GGGGKGMRI + E + F + EA SFG+ + +E++I NP+HIE+Q
Sbjct: 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215
Score = 41.1 bits (97), Expect = 2e-04
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
KPK D++ H A MPG V V VG+ + Q L +
Sbjct: 1069 KPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLIT 1108
Score = 32.7 bits (75), Expect = 0.10
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVGKT 246
ET I AP G++K V GD I G L + K
Sbjct: 1114 ETTI-QAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 267 bits (685), Expect = 7e-83
Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 12 HVKLADEAVCIGPPVAA-------QSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS 64
H ADE+ +G +SY+++D++I + + ADA+HPGYG LSE+ FV
Sbjct: 53 HRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVD 112
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
+ G++FIGP A+ +R +G+K+ ++ LA GV ++P + D ++A IGY
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
PVM+KAS GGGG+GMR+ ++ + + + +EA A+FG D + +EK ++ RH+E Q
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231
Score = 42.3 bits (100), Expect = 9e-05
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 200 AKLLPPKPKLDETKILH--APMPGLVKSVNCKVGDQIMEGQELCVV 243
A + K + H APMPG++ V G + G L +
Sbjct: 1081 ATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSI 1126
Score = 31.9 bits (73), Expect = 0.18
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
ET I HA G + V K GDQI + ++L V
Sbjct: 1132 ETAI-HAEKDGTIAEVLVKAGDQI-DAKDLLAV 1162
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 183 bits (466), Expect = 9e-60
Identities = 71/104 (68%), Positives = 86/104 (82%)
Query: 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
GDK+ESK LAK+A VN IPGF+G+++DA+ V IAR+IGYPVMIKASAGGGGKGMR
Sbjct: 3 SGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMR 62
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG 184
IA +D+E +GF+LSSQEAA+SFGDDR+L+EKFI NPRHI
Sbjct: 63 IAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPS 106
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 90.9 bits (226), Expect = 2e-21
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 23/188 (12%)
Query: 14 KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGY-GFLSENASFVSRLKEEGVV 72
LADE + N D++ ++ D + + + +E +
Sbjct: 47 NLADEISYM-------DISNPDEVEQKVKDLNLDGAATCCLDTGIVSLARI--CDKENL- 96
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
+G E GDK + K+ K+ VN ++R+ + ++ PV++KA+
Sbjct: 97 -VGLNEEAAIMCGDKYKMKEAFKKYNVNTARH--FVVRNENELKNALENLKLPVIVKATD 153
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI----QGTTYK 188
G KG+ IA ++EAI+GF + D +VE+FI+
Sbjct: 154 LQGSKGIYIAKKEEEAIDGFNETMNLTK----RDYCIVEEFIEGY-EFGAQAFVYKNDVL 208
Query: 189 FLIQTEKE 196
F++ E
Sbjct: 209 FVMPHGDE 216
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 79.9 bits (197), Expect = 9e-18
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 22/166 (13%)
Query: 14 KLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYG----FLSENASFVSRLKEE 69
+AD+ + P + YI D ++ + A+ L++ R +
Sbjct: 44 YMADQHYIV-PKIDEVEYI--DHLLTLCQDEGVTALLTLIDPELGLLAQATE---RFQAI 97
Query: 70 GVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIK 129
GV I DK + G+ + + A ++ PV +K
Sbjct: 98 GVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTY--ATMASFEEALAAGEVQLPVFVK 155
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
G +R +E + F + ++V++ +
Sbjct: 156 PRNGSASIEVRRVETVEEVEQLFSK----------NTDLIVQELLV 191
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 78.0 bits (192), Expect = 1e-16
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 34 VDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL 93
V++I+ ADA+ + G+ G + DK + +
Sbjct: 91 VEQIVKVAEMFGADAITTNNELFIAPMAKACE--RLGLRGAGV--QAAENARDKNKMRDA 146
Query: 94 AKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFK 153
+AGV I N + + +IG P+++K + G+ + + + A + F
Sbjct: 147 FNKAGVKSIK--NKRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFN 204
Query: 154 ------LSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTE 194
S A + + E+F++ Q Y I E
Sbjct: 205 RVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIE 251
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 62.7 bits (153), Expect = 1e-11
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 83 GMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
DK +K+L G+ + + +I ++G V +KA+ G G+
Sbjct: 133 SF-DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGIS 191
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
N +E E + + D ++L+E+ + R +E+
Sbjct: 192 RVTNAEEYTEALSD-----SFQY-DYKVLIEEAVNGARELEV 227
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 62.3 bits (152), Expect = 2e-11
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
+K +K AK+ G+ + + + +P ++K S G G+ +
Sbjct: 147 SY-NKYLTKLYAKDLGIKTLDYV-LLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVV 204
Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
++E I ++A + +L+E FI+ + +
Sbjct: 205 KEEKELIYAL-----DSAFEY-SKEVLIEPFIQGVKEYNL 238
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 59.9 bits (146), Expect = 9e-11
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
M DK SK++ +AGV ++P +R + P +K + G G+
Sbjct: 116 CM-DKDLSKRVLAQAGVPVVPWV--AVRKGE---PPVVPFDPPFFVKPANTGSSVGISRV 169
Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
Q+ A + D++ +VEK + R +E+
Sbjct: 170 ERFQDLEAAL-----ALAFRY-DEKAVVEKALSPVRELEV 203
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 59.5 bits (145), Expect = 1e-10
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 38/154 (24%)
Query: 59 NASFVSRLKEEG--VVFI---GPTAE--CIRG----MG---------------DKLESKK 92
+S LK+EG F G E I+G G DK +K
Sbjct: 54 AERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKL 113
Query: 93 LAKEAGVNIIPGFNGIIRDAD---HCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
+ ++ GV P F ++R D +I +G P+ +K ++ G +
Sbjct: 114 VWQQTGVPT-PPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALP 172
Query: 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
AA+ D ++VEK I+ E
Sbjct: 173 AALSE-----AATH-DKIVIVEKSIEGGG--EYT 198
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 58.3 bits (142), Expect = 3e-10
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
DK SKK+ + G+ P + + + D + +G+P+++K ++GG G++I +
Sbjct: 97 DKNISKKILRYEGIET-PDWIELTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDK 155
Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIK 175
E I + + D +++EK+IK
Sbjct: 156 DELISMLETVFEW------DSEVVIEKYIK 179
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP
binding protein, csgid, A binding, cell shape; HET: ADP;
2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Length = 364
Score = 58.0 bits (141), Expect = 4e-10
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 83 GMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
M DK +K+L ++AG+NI P R A E+ +G P+ +K + G G+
Sbjct: 138 CM-DKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVS 196
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
N+ + + A F D +++VE+ IK R IE
Sbjct: 197 KVANEAQYQQAV-----ALAFEF-DHKVVVEQGIK-GREIEC 231
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 56.4 bits (137), Expect = 2e-09
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGF----NGIIRDADHCVE-IARDIGYPVMIKASAGGGGK 137
M DKL K+L + G+ +P + + + ++ + + YPV +K + G
Sbjct: 127 SM-DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185
Query: 138 GMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
G+ NN+ E EG + A F D ++++E+ + R IE+
Sbjct: 186 GISKCNNEAELKEGI-----KEAFQF-DRKLVIEQGVN-AREIEV 223
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 56.1 bits (136), Expect = 2e-09
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
GM DK +KKL G+ + + + +G PV +K + GG G+
Sbjct: 149 GM-DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRV 207
Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
++ + A D +++VE I R +E
Sbjct: 208 SSWDQLPAAV-----ARARRH-DPKVIVEAAIS-GRELEC 240
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas
oryzae PV} PDB: 3r5f_A* 3rfc_A*
Length = 386
Score = 56.1 bits (136), Expect = 2e-09
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 83 GMGDKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
M DK +K++ ++A + + P F+ + +G P+ +K + G G+
Sbjct: 157 AM-DKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVS 215
Query: 141 IANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
L A ++ D ++LVE + R IE
Sbjct: 216 QVRTADAFAAALAL-----ALAY-DHKVLVEAAVA-GREIEC 250
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 56.0 bits (136), Expect = 2e-09
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 37/148 (25%)
Query: 59 NASFVSRLKEEG--VVFI---GPTAE--CIRG----MG---------------DKLESKK 92
V++LK G VFI G E ++G MG DKL SK
Sbjct: 43 KEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102
Query: 93 LAKEAGVN-----IIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQE 147
L + AG+ + +D + +G PV++K S G GM +
Sbjct: 103 LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA 162
Query: 148 AIEGFKLSSQEAAASFGDDRILVEKFIK 175
+ +L+ Q D+ +L+EK++
Sbjct: 163 LQDALRLAFQH------DEEVLIEKWLS 184
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 55.3 bits (134), Expect = 4e-09
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
M DK + +AK AG+ + +I D +A YPV +K + G G++
Sbjct: 130 CM-DKSLTYIVAKNAGIATPAFW--VINKDDR--PVAATFTYPVFVKPARSGSSFGVKKV 184
Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
N+ E E+A + D +IL+E+ + +
Sbjct: 185 NSADELDYAI-----ESARQY-DSKILIEQAVS-GCEVGC 217
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 54.9 bits (133), Expect = 5e-09
Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 19/162 (11%)
Query: 16 ADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSEN--ASFVSRLKEEGVVF 73
A + I + ++ D + + + + P E + +L+EEG+
Sbjct: 52 AHRSHVI-------NMLDGDALRRVVELEKPHYIVP----EIEAIATDMLIQLEEEGLNV 100
Query: 74 IGPTAECIRGMGDKLESKKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
+ P A + ++ ++LA +E + + E DIGYP ++K
Sbjct: 101 V-PCARATKLTMNREGIRRLAAEELQLPTST-Y-RFADSESLFREAVADIGYPCIVKPVM 157
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
GKG + ++ + +K + + G R++VE +
Sbjct: 158 SSSGKGQTFIRSAEQLAQAWKYA--QQGGRAGAGRVIVEGVV 197
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 54.5 bits (131), Expect = 1e-08
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDI-GYPVMIKASAGGGGKGMRI- 141
M +K+ +KK+ E G D + I P+++K + G G+ I
Sbjct: 482 MANKVVTKKILDEKHFPTPFG--DEFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIF 539
Query: 142 --ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191
+ N + ++ E D ILVE++ I+GT Y+F +
Sbjct: 540 KTSANLASYEKAIDIAFTE------DSAILVEEY--------IEGTEYRFFV 577
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 53.4 bits (129), Expect = 1e-08
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIA 142
M DK + +A+ AG+ + + + + YPV +K + G G+
Sbjct: 130 CM-DKSLTYLVARSAGIATPNFW--TVTADEK--IPTDQLTYPVFVKPARSGSSFGVSKV 184
Query: 143 NNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+++ EAA + D ++L+E+ + I
Sbjct: 185 AREEDLQGAV-----EAAREY-DSKVLIEEAVI-GTEIGC 217
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella
burnetii}
Length = 372
Score = 51.8 bits (125), Expect = 5e-08
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 83 GMGDKLESKKLAKEAGVNIIPGF---NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGM 139
M +K +K + + G+ ++ + + + R + +KA + G
Sbjct: 138 CM-EKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVAT 196
Query: 140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
+ E + + + DDR++VE I+ R IE
Sbjct: 197 LPVKTETEFTKAV-----KEVFRY-DDRLMVEPRIR-GREIEC 232
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 51.9 bits (125), Expect = 6e-08
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 23/165 (13%)
Query: 15 LADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSE----NASFVSRLKEEG 70
+A + + ++ D + + + + DA+ P E N + +++G
Sbjct: 59 VAHRSYVG-------NMMDKDFLWSVVEREKPDAIIP------EIEAINLDALFEFEKDG 105
Query: 71 VVFIGPTAECIRG-MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIK 129
+ P A M + + L KEA V + D E IGYP K
Sbjct: 106 YFVV-PNARATWIAMHRERLRETLVKEAKVPTSR-Y-MYATTLDELYEACEKIGYPCHTK 162
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
A GKG ++ + ++ + + A ++I+VE+ I
Sbjct: 163 AIMSSSGKGSYFVKGPEDIPKAWEEA--KTKARGSAEKIIVEEHI 205
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 48.2 bits (115), Expect = 7e-08
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 205 PKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ + +L +PMPG+V +V+ K GD + EGQE+CV+
Sbjct: 18 LYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVI 56
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 214 ILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ A G VKSV+C+ GD + EG L +
Sbjct: 64 SMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 51.7 bits (125), Expect = 7e-08
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 65 RLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
L+ GV IG + + I D+ + + + N + + VE A++IGY
Sbjct: 653 ALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPA--NATVTAIEMAVEKAKEIGY 710
Query: 125 PVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
P++++AS GG+ M I ++ + F+ A + D +L++ F+ + +++
Sbjct: 711 PLVVRASYVLGGRAMEIVYDEADLRRYFQ----TAVSVSNDAPVLLDHFLDDAVEVDV 764
Score = 51.3 bits (124), Expect = 9e-08
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 26/150 (17%)
Query: 24 PPVAAQSYI---NVDKIIDAIRQTRADAVHPGYG---------FLSENASFVSRLKEEGV 71
P +A +YI + + + I + R DAV P G L L+E GV
Sbjct: 58 PEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGV----LEEFGV 113
Query: 72 VFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKAS 131
IG TA+ I D+ K+ G+ GI + + +A D+G+P +I+ S
Sbjct: 114 TMIGATADAIDKAEDRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPS 171
Query: 132 --AGGGGKGMRIANNDQEAIE----GFKLS 155
GG G G IA N +E E G LS
Sbjct: 172 FTMGGSGGG--IAYNREEFEEICARGLDLS 199
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 51.5 bits (123), Expect = 8e-08
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 84 MGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVE-IARDIGYPVMIKASAGGGGKGMRI- 141
M +K+ +KK+ ++AG N+ + V A V+IK + G G+ I
Sbjct: 487 MENKVVTKKVLQKAGFNVPQSV--EFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIF 544
Query: 142 ---ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLI 191
N ++ + +++ +E D ++VE + + GT Y+F +
Sbjct: 545 QQGVQNREDFAKALEIAFRE------DKEVMVEDY--------LVGTEYRFFV 583
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 51.0 bits (123), Expect = 9e-08
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
RL+ ++ P A+ + D+L K + GV P F+ + + E
Sbjct: 71 PVEAARRLEGRLPLY--PPAKALEVAQDRLREKTFFQGLGVPT-PPFH-PVDGPEDLEEG 126
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
+ +G P ++K GG GKG + ++EA EA + G +++E F+
Sbjct: 127 LKRVGLPALLKTRRGGYDGKGQALVRTEEEA--------LEALKALGGRGLILEGFV 175
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 50.7 bits (122), Expect = 1e-07
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 83 GMGDKLESKKLAKEA-GVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGM 139
M DK+ + ++ + A + + E+ + YPV +K + G G+
Sbjct: 159 AM-DKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGI 217
Query: 140 RIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI 182
A N + + A + D R+L+E+ + + R IE+
Sbjct: 218 SKAENRTDLKQAI-----ALALKY-DSRVLIEQGV-DAREIEV 253
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 50.8 bits (121), Expect = 1e-07
Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 19/176 (10%)
Query: 4 PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFV 63
V + K+AD+ + + ++ ++ + +++ +G
Sbjct: 49 KGRDVPYKRFKVADKFIYV------DNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLD 102
Query: 64 SRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIG 123
+ V G +R ++ KL +EAG+ + + E DI
Sbjct: 103 NVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKKY-----------ESPEDID 150
Query: 124 YPVMIKASAGGGGKGMRIANNDQEAIEGFK-LSSQEAAASFGDDRILVEKFIKNPR 178
V++K GG+G IA++ +E + + L + +E+++
Sbjct: 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTN 206
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 49.9 bits (120), Expect = 2e-07
Identities = 17/117 (14%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
+ + L++ + ++ + ++ K ++AG+ + + ++++ + E
Sbjct: 87 DYRCLQWLEKHAYLP--QGSQLLSKTQNRFTEKNAIEKAGLPVAT-YR-LVQNQEQLTEA 142
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
++ YP ++K + GG GKG + ++ + EA ++EK++
Sbjct: 143 IAELSYPSVLKTTTGGYDGKGQVVLRSEADV--------DEARKLANAAECILEKWV 191
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp,
purine biosynthesis, antimicrobial, ATP-binding,
decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli}
SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A*
1b6s_A*
Length = 355
Score = 48.3 bits (116), Expect = 6e-07
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 17/120 (14%)
Query: 58 EN--ASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHC 115
E + ++R F + + D+L K+L + + P + ++ +
Sbjct: 51 ERWPETALTRQLARHPAF--VNRDVFPIIADRLTQKQLFDKLHLPTAP-WQ-LLAERSEW 106
Query: 116 VEIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
+ +G ++K GG G+G ++ Q A +G+ +VE+ I
Sbjct: 107 PAVFDRLGELAIVKRRTGGYDGRGQWRLRANETE--------QLPAECYGE--CIVEQGI 156
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 48.2 bits (115), Expect = 6e-07
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 5/131 (3%)
Query: 47 DAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFN 106
S + L G+ + E I GDK + +AG+
Sbjct: 50 TVALERCVSQSRGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVALAKAGLPQPK--T 106
Query: 107 GIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD 166
+ D + + + GYPV++K G G+ +A +E F
Sbjct: 107 ALATDREEALRLMEAFGYPVVLKPVIGSWGRL--LAXXXXXXXXXXXXXXKEVLGGFQHQ 164
Query: 167 RILVEKFIKNP 177
++++++ P
Sbjct: 165 LFYIQEYVEKP 175
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 48.0 bits (115), Expect = 9e-07
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
+ + + E + P+ + IR + +K K+ ++ G+ + + ++
Sbjct: 98 DTYALEEVASEVKIE--PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKV 155
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
+GYP+M+K+ G+G N+ + EA + D + EK+
Sbjct: 156 GEQLGYPLMLKSKTMAYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEKWA 204
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 47.4 bits (112), Expect = 1e-06
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 20/169 (11%)
Query: 18 EAVCIGPPVAAQSYINVDKIIDAI--RQTRADAVHPGYGFLSENASFVS-----RLKEEG 70
E + G Y + D + + + + SFV+ ++
Sbjct: 26 ETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFVAHLGIELVENMK 85
Query: 71 VVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKA 130
V + G +R D+ +K K+AG+ + P E DI PV++K
Sbjct: 86 VPYFG-NKRVLRWESDRNLERKWLKKAGIRV-P----------EVYEDPDDIEKPVIVKP 133
Query: 131 SAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRH 179
GGKG +A + ++ + I +++++
Sbjct: 134 HGAKGGKGYFLAKDPEDFWRKAE-KFLGIKRKEDLKNIQIQEYVLGVPV 181
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 46.5 bits (111), Expect = 3e-06
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDAD--HCV 116
A+ + L V P C+ D++ K+ + +GV + I A
Sbjct: 108 PAASLDFLARTTFVA--PAGRCVAVAQDRIAEKRFIEASGVPV-APHVVIESAAALAALD 164
Query: 117 EIARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
+ A D P ++K + G GKG + +EA ++A A+ G ++EK +
Sbjct: 165 DAALDAVLPGILKTARLGYDGKGQVRVSTAREA--------RDAHAALGGVPCVLEKRL 215
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 46.2 bits (109), Expect = 3e-06
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 28/196 (14%)
Query: 13 VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
+ S +++K ++ ++DA +++ E+
Sbjct: 42 TGFVRPEFSCLFTLPVDSMDSMEKYLE-----KSDAFLIIAPEDDFLLYTLTKKAEKYCE 96
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
+G ++ I DK E K + R + +IK
Sbjct: 97 NLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSL--------------RPLDCKFIIKPRT 142
Query: 133 GGGGKGMRIANND------QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTT 186
G+G+ ++ QE IEG LS + + G+D + + + G
Sbjct: 143 ACAGEGIGFSDEVPDGHIAQEFIEGINLS---VSLAVGEDVKCLSVNEQIINNFRYAGAV 199
Query: 187 YKFLIQTEKEFEYAKL 202
I E + E +
Sbjct: 200 VPARISDEVKREVVEE 215
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; 2.15A {Ehrlichia chaffeensis}
Length = 442
Score = 45.6 bits (109), Expect = 6e-06
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
L EEG++ GP+ R K +K+L G IP G D + +
Sbjct: 100 SDALTEEGILVFGPSKAAARLESSKGFTKELCMRYG---IPTAKYGYFVDTNSAYKFIDK 156
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
P+++KA GKG I + +EA FG+ I++E+F
Sbjct: 157 HKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHK--FGEAGCAIIIEEF 208
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 45.5 bits (109), Expect = 7e-06
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
V ++ G+ GP E + G K +K K+ G IP F D + E
Sbjct: 79 VDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYG---IPTARYEVFT----DFEKAKE 131
Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
+G P+++KA GKG + ++AIE + FG +R+++E+F
Sbjct: 132 YVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKI--FGKSSERVVIEEF 187
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 41.8 bits (99), Expect = 8e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 209 LDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ ++ APMPG V V +VGD++ GQ L V+
Sbjct: 2 VVSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVL 36
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244
E +I +P G+VK + K G+ + GQ L +G
Sbjct: 42 ENEI-PSPRDGVVKRILVKEGEAVDTGQPLIELG 74
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN
structural genomics of infectious diseases, csgid; HET:
MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Length = 431
Score = 44.4 bits (106), Expect = 1e-05
Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
V + G+ GPT + G K +K IP F D + +
Sbjct: 84 VDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHN---IPSAEYQNFT----DVEAALA 136
Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
R G P++IKA GKG+ +A +EA A FGD RI+VE+F
Sbjct: 137 YVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNA--FGDAGHRIVVEEF 192
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus
kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Length = 451
Score = 44.0 bits (105), Expect = 2e-05
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
V R EG+ GP+ G K +K+L K+ G IP + +
Sbjct: 100 VDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYG---IPTADHAAFTSYEEAKAYIEQ 156
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
G P++IKA GKG+ +A +EA+ K + + FG ++++E++
Sbjct: 157 KGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQ--FGTAGSQVVIEEY 208
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 43.6 bits (104), Expect = 2e-05
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
V ++ G+ GP+ G K +K L K+ IP F D
Sbjct: 79 VDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYD---IPTAEYETFT----SFDEAKA 131
Query: 118 IARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
++ G P++IKA GKG+ +A ++EAI ++ FGD +++E++
Sbjct: 132 YVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEK--FGDASASVVIEEY 187
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 43.2 bits (103), Expect = 4e-05
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-GFNGIIRDADHCVEIARD 121
+ G++ GPT + G K +K L + G IP + R+ + +
Sbjct: 78 ADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYG---IPTARYRVFREPLEALAYLEE 134
Query: 122 IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKF 173
+G PV++K S GKG+ +A + +A + A ++VE++
Sbjct: 135 VGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEG----GEVVVEEY 182
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine
nucleotide biosynthetic pathway, structural genomics,
NPPSFA; 2.35A {Aquifex aeolicus}
Length = 365
Score = 42.9 bits (102), Expect = 4e-05
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 76 PTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGG- 134
P + + ++ K K+ G + F I D ++ + PV+IKA G
Sbjct: 82 PNPQALYVKKSRIREKLFLKKHGFPVPE-FLVI--KRDEIIDALKSFKLPVVIKAEKLGY 138
Query: 135 GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDR-ILVEKFI 174
GKG ++A + + + ++E+F+
Sbjct: 139 DGKGQYRIKKLEDA--------NQVVKNHDKEESFIIEEFV 171
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 40.1 bits (94), Expect = 6e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
APM G ++ V K GD++ G L V+
Sbjct: 17 PLAPMTGTIEKVFVKAGDKVKAGDSLMVM 45
Score = 35.5 bits (82), Expect = 0.003
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ +P G VK V + G Q L
Sbjct: 54 IKSPKDGTVKKVFYREGAQANRHTPLVEF 82
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 39.1 bits (92), Expect = 7e-05
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
M G + V+ K GDQI +GQE+ ++
Sbjct: 4 IQMAGNLWKVHVKAGDQIEKGQEVAIL 30
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
E I A G+VK V K GD + EG L +
Sbjct: 36 EIPI-VADRSGIVKEVKKKEGDFVNEGDVLLEL 67
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 42.1 bits (100), Expect = 7e-05
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
+A + L E+ + + I+ + D+L K+ K AG ++P F ++++ +
Sbjct: 85 SAQQLKLLCEKYNIP--QGYQAIQLLQDRLTEKETLKSAGTKVVP-FI-SVKESTDIDKA 140
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFI 174
+GYP ++K GG GKG + NN+++ QE + EK++
Sbjct: 141 IETLGYPFIVKTRFGGYDGKGQVLINNEKDL--------QEGFKLIETSECVAEKYL 189
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 38.4 bits (90), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ AP+ G V + K GD + GQ + V+
Sbjct: 11 IPAPLAGTVSKILVKEGDTVKAGQTVLVL 39
Score = 36.8 bits (86), Expect = 6e-04
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244
ET+I +AP G V+ V K D + GQ L +G
Sbjct: 45 ETEI-NAPTDGKVEKVLVKERDAVQGGQGLIKIG 77
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 41.4 bits (98), Expect = 2e-04
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 63 VSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVE 117
V L+ GV GPTAE + K +K+ G IP F +
Sbjct: 105 VGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHG---IPTAQWKAFT----KPEEACS 157
Query: 118 IARDIGYP-VMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
+P +++KAS GKG+ +A + +EA + + QE A FG + I++E+
Sbjct: 158 FILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKA--FGAAGETIVIEEL 214
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national
on protein structural and functional analyses; 2.00A
{Pyrococcus horikoshii}
Length = 238
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
E+K++ K G+ + + + D +E A++IGYPV++K +
Sbjct: 24 EAKQVLKAYGLPVPEE--KLAKTLDEALEYAKEIGYPVVLKLMS 65
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1
c.30.1.1 d.142.1.2
Length = 412
Score = 39.0 bits (92), Expect = 9e-04
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 74 IGPTAECIRGMGDKLESKKLAKEAGVNIIP-----GFNGIIRDADHCVEIARDIGYPVMI 128
GP E R G K+ +K+ K+ G I + E + P +I
Sbjct: 94 FGPVKEVARLEGSKVYAKRFMKKYG---IRTARFEVAE----TPEELREKIKKFSPPYVI 146
Query: 129 KASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGD--DRILVEKF 173
KA GKG+ I ++ +E IE +++++F
Sbjct: 147 KADGLARGKGVLILDSKEETIEKGSKLIIGEL--IKGVKGPVVIDEF 191
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 37.9 bits (89), Expect = 0.002
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 59 NASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEI 118
+ + +L EG I P+ + + DK K+ K+ G+ + P + +++D +
Sbjct: 74 DVQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPV-PEYK-LVKDLE---SD 127
Query: 119 ARDIGYPVMIKASAGG-GGKGMRIANNDQEAIEGFK 153
R+ G+PV+ KA GG G+G+ I N+++ K
Sbjct: 128 VREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK 163
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 37.3 bits (87), Expect = 0.004
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 204 PPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
PK D + APMPG V + G ++ +GQ LCV+
Sbjct: 641 HPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVL 680
Score = 32.3 bits (74), Expect = 0.17
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 211 ETKILHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
ET + +PM G V+ V+ + + +
Sbjct: 686 ETVV-TSPMEGTVRKVHVTKDMTLEGDDLILEI 717
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 36.7 bits (84), Expect = 0.004
Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 12/150 (8%)
Query: 40 AIRQTRADAV----HPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAK 95
+R R D V H +E+ + + + + E I DK
Sbjct: 63 VVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMV 122
Query: 96 EAGVNIIPGFNGIIRDADHC--VEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFK 153
+ +I + E+ +PV++K G G N +
Sbjct: 123 AIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYD------ 176
Query: 154 LSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+ + E FI I +Q
Sbjct: 177 FQDIASVVALTQTYATAEPFIDAKYDIRVQ 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.005
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 43/128 (33%)
Query: 83 GMG-DKLESKKLAKEAGVNIIPGFNGIIRDADHC---------VEIARDIGYPVMIKASA 132
GMG D ++ K A++ +N AD+ ++I + PV +
Sbjct: 1630 GMGMDLYKTSKAAQDV-------WN----RADNHFKDTYGFSILDIVIN--NPVNL-TIH 1675
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKF--- 189
GG KG RI N I + D ++ EK K I T+Y F
Sbjct: 1676 FGGEKGKRIRENYSAMIF----------ETIVDGKLKTEKIFKE---INEHSTSYTFRSE 1722
Query: 190 ---LIQTE 194
L T+
Sbjct: 1723 KGLLSATQ 1730
Score = 34.3 bits (78), Expect = 0.043
Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 78/201 (38%)
Query: 11 RHVKLA-----DEAVCIGPP------------VAAQSYINVDKIIDAIRQTRADAVHPGY 53
+ V+++ V GPP A S ++ +I + R+ +
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK-----FSN 418
Query: 54 GFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKL---AKEAGVNIIPGFNGI-I 109
FL + F S L + P ++ I D L + AK+ + + F+G +
Sbjct: 419 RFLPVASPFHSHL-------LVPASDLI--NKD-LVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 110 RDAD------HCVEIARDIGYPV----MIKASA------G-GG-------------GKGM 139
R I R PV + A G GG G G+
Sbjct: 469 RVLSGSISERIVDCIIRL---PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Query: 140 RI-------ANNDQEAIEGFK 153
R+ N D + GFK
Sbjct: 526 RVIVAGTLDINPDDDY--GFK 544
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 32.7 bits (75), Expect = 0.020
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
L +P G + + G + G +
Sbjct: 8 LRSPSAGKLTQYTVEDGGHVEAGSSYAEM 36
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 32.0 bits (73), Expect = 0.037
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
L +P G + + G + G +
Sbjct: 20 LRSPSAGKLTQYTVEDGGHVEAGSSYAEM 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.043
Identities = 38/301 (12%), Positives = 75/301 (24%), Gaps = 133/301 (44%)
Query: 24 PPVAAQSYINVDKIIDAIRQTRADAVH--------PGYGFLSE----------------- 58
+ + ++ + + + V Y FL
Sbjct: 58 KDAVSGTL----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 59 ---------NASF----VSRLK--------------EEGVVFIGPTAECIRGMGDKLESK 91
N F VSRL+ + V+ I G+ S
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------IDGVLG---SG 162
Query: 92 K--LAKEA----GVNIIPGFN------GIIRDADHCVEIARDIGYPVMIKASAGG-GGKG 138
K +A + V F + +E+ + + Y + ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 139 MRIANN--------------------------DQEAIEGFKLSSQEAAASFGDDRILV-E 171
+++ + + +A F LS +IL+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----------KILLTT 272
Query: 172 KFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVG 231
+F + + TT+ L DE K L L+K ++C+
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLT----------PDEVKSL------LLKYLDCRPQ 316
Query: 232 D 232
D
Sbjct: 317 D 317
Score = 30.6 bits (68), Expect = 0.53
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 57/234 (24%)
Query: 2 LFPDPCVFQRHVKLADEAVCIGPPV-AAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
+F VF + + + + +V +++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVN----------------KLHKY 414
Query: 61 SFVSRLKEEGVVFIGPTAECIRGMGDKLESK-KLAKEAGVN--IIPGFNGIIR--DADHC 115
S V + +E + I LE K KL E ++ I+ +N I + D+D
Sbjct: 415 SLVEKQPKESTISI---------PSIYLELKVKLENEYALHRSIVDHYN-IPKTFDSDDL 464
Query: 116 VEIARD------IGYPVMIKASAGGGGKGMRIANNDQEAIEGFKL----SSQEAAASFGD 165
+ D IG+ + R+ D +E K+ ++ A+ S +
Sbjct: 465 IPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILN 522
Query: 166 DRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLLPPKPKL---DETKILH 216
++ + +I Y+ L+ +F L + L T +L
Sbjct: 523 TLQQLKFYKP---YICDNDPKYERLVNAILDF----LPKIEENLICSKYTDLLR 569
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Length = 238
Score = 31.8 bits (73), Expect = 0.14
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 30 SYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
SY+N + +++ + Y L + +V K G
Sbjct: 156 SYLNGELSPMELKELGFTGLDYHYKVLQSHPDWVKDCKVLG 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.64
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 194 EKEFEYAKLLPPKPKLDETKILHAP--MPGLVKSVNCKV 230
EK+ L K KL + L+A P L ++ +
Sbjct: 18 EKQ----AL---K-KLQASLKLYADDSAPAL--AIKATM 46
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 28.0 bits (63), Expect = 0.75
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
+P G+VKSV+ K+GD++ EG + +
Sbjct: 46 SPKAGVVKSVSVKLGDKLKEGDAIIEL 72
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 28.0 bits (63), Expect = 0.84
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
AP G+VK + VGD++ G + +
Sbjct: 48 APFAGVVKELKVNVGDKVKTGSLIMIF 74
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 27.7 bits (62), Expect = 1.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
AP G+VK + VGD++ G + +
Sbjct: 44 APFAGVVKELKVNVGDKVKTGSLIMIF 70
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
metallo-enzyme, STRU function project, S2F, unknown
function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB:
1m68_A 1pb0_A
Length = 245
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 21 CIGPPVAAQSYINVDKIIDAIRQTR-------ADAVHPGYGFLSENASFVSRLKEEGVVF 73
I P + I+V + +A + + + +H G + +++ G
Sbjct: 128 IISHPGNPKYEIDVKAVAEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWV 187
Query: 74 -IGPTAECIRGMGDKLESKKLAKEAGV 99
+G + MG+ E K+
Sbjct: 188 ALGSDSHTAFTMGEFEECLKILDAVDF 214
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 27.6 bits (62), Expect = 1.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 217 APMPGLVKSVNCKVGDQIMEGQELCVV 243
A + G+VK V KVGD+I EG + VV
Sbjct: 49 AEVAGVVKEVKVKVGDKISEGGLIVVV 75
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.2
Identities = 27/154 (17%), Positives = 39/154 (25%), Gaps = 45/154 (29%)
Query: 23 GP---PVAA--QSYINVDKIIDAIRQTRAD---------AVHPG-YGFLSENASFVSRLK 67
GP PV A S +VD ++ I +A G + F + A S
Sbjct: 1097 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKA--TSNTL 1154
Query: 68 EEGVVFIGPTAECI-----RG---MGDK-----LESKKLAKEAGVNI---IPGFNGIIRD 111
EE P R + LA + GV I + D
Sbjct: 1155 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMA-ATATD 1213
Query: 112 ADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
+ A G R ++
Sbjct: 1214 KIG-----------RSVPAPGKGILTTAREHHSS 1236
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase,
ketohexose; 1.98A {Clostridium cellulolyticum} PDB:
3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Length = 294
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 18/104 (17%)
Query: 86 DKLESKKLAKEAGVNII------PGFNGIIRDAD----------HCVEIARDIGYPVMIK 129
E K A G+ + N D D ++ + ++
Sbjct: 48 QINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGG 107
Query: 130 ASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDD--RILVE 171
A + + E S +E A +E
Sbjct: 108 ALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLE 151
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 28.7 bits (65), Expect = 1.4
Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 11 RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
++ A + +G ++ + + +AVHP + + V+ ++ G
Sbjct: 136 LALRKAAPGLPLG-------FLMAEDHSALLPCLGVEAVHPHHALV--TEEAVAGWRKRG 186
Query: 71 V 71
+
Sbjct: 187 L 187
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 28.9 bits (65), Expect = 1.4
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 45 RADAVHPGYGFLSENASFVS 64
+ + P Y L+E +V+
Sbjct: 341 QERVIRPSYW-LAEATVYVA 359
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 28.7 bits (65), Expect = 1.5
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+ + +H F + VS +K G
Sbjct: 177 SAWQERLEHLDCAGLHIHQSFF--DVQQVSDIKAAG 210
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.30A {Sulfolobus solfataricus} SCOP:
c.151.1.1 c.152.1.1
Length = 336
Score = 29.0 bits (64), Expect = 1.6
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 67 KEEGVVFIGPTAECIRGMGDKLESKKLAK------EAGVNIIPGFNGIIRDADHCVEIAR 120
+ +VF+ R + +SK + +IP G D E++
Sbjct: 54 CYDAIVFVMALEGATRIVCKYAKSKTEDPAIVCIDDKINYVIPLLGGHWGANDIARELSV 113
Query: 121 DIGYPVMIKASAGGGGK 137
+ +I +A GK
Sbjct: 114 ILNSTPIITTAAEIKGK 130
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2,
protein structure initiative, midwest center for STR
genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 28.4 bits (64), Expect = 1.8
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 35 DKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
D + + ++H + L + + V +LK+ G
Sbjct: 174 DDWRELTARLGCVSIHLNHKLL--DKARVMQLKDAG 207
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 28.4 bits (64), Expect = 2.7
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 45 RADAVHPGYGFLSENASFVS 64
R +A +P YG L+E V+
Sbjct: 319 RKEAFYPCYG-LAEATLLVT 337
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester
phosphodiesterase, T. tengcongensis; 1.91A
{Thermoanaerobacter tengcongensis}
Length = 252
Score = 28.0 bits (63), Expect = 2.9
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 33 NVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+ + + A ++HP Y + V K+ G
Sbjct: 176 GLVEPWHMALRMEAYSLHPFYFNI--IPELVEGCKKNG 211
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 27.6 bits (62), Expect = 3.0
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 9/75 (12%)
Query: 3 FPDPCVFQ-------RHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGF 55
+ + H+K V I ++ A+ V + +
Sbjct: 140 MQERVDYCSFHHEALAHLKALCPDVKITYLFNYMGQPTPLDFVEQACYGDANGVSMLFHY 199
Query: 56 LSENASFVSRLKEEG 70
L V E+G
Sbjct: 200 L--TKEQVCTAHEKG 212
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
binding protein, PURP structural genomics, protein
structure initiative; HET: ATP; 2.50A {Thermococcus
kodakarensis} SCOP: c.30.1.8 d.142.1.9
Length = 320
Score = 28.0 bits (62), Expect = 3.1
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 17/147 (11%)
Query: 18 EAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVS-----RLKEEGVV 72
+ P Y ++ + D + ++ G + + SFV+ +++
Sbjct: 26 KTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAIEKAKAR 85
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
F G ++ K + AG+ + ++ D ++
Sbjct: 86 FFG-NRRFLKWETTFELQDKALEGAGIPRVE----VVEPEDA------KPDELYFVRIEG 134
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEA 159
GG G I E E +
Sbjct: 135 PRGGSGHFIVEG-SELEERLSTLEEPY 160
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 27.9 bits (63), Expect = 3.4
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 54 GFLSENASFVSRLKEEGVVFIGPT 77
L E A V RL+E G + T
Sbjct: 92 PPLPEEARAVRRLREAGALLFAKT 115
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 27.8 bits (62), Expect = 3.9
Identities = 6/48 (12%), Positives = 17/48 (35%)
Query: 81 IRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
+ + + + + VN++ N D ++ E G ++
Sbjct: 154 VETLVPERRDQVGKRPRQVNVLCSANLTPGDLEYIAESIESFGLRPLL 201
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 27.5 bits (61), Expect = 4.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 208 KLDETKILHAPMPGLVKSVNCKVGDQIMEGQEL 240
K+ L AP+ G++ + + + G I + +
Sbjct: 203 KIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVV 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 27.6 bits (62), Expect = 4.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 26/73 (35%)
Query: 34 VDKIIDAIRQTRADAVHPGYGFLSEN---ASFVSRLKEEGVVFIGPTAECIRGMGDKLE- 89
++ + +AI+ RA G E+ SF +F GPT G+G K E
Sbjct: 467 IEALTEAIKMARA-------GLGHEHKPVGSF---------LFAGPT-----GVG-KTEV 504
Query: 90 SKKLAKEAGVNII 102
+ +L+K G+ ++
Sbjct: 505 TVQLSKALGIELL 517
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Length = 358
Score = 27.4 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 115 CVEIARDIGYPVMIKASAGG----GGKGMRIANNDQEAIEG 151
+E A + PV+++ S GG GKG++ AI G
Sbjct: 45 VLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILG 85
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 27.4 bits (61), Expect = 4.8
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
E +R +++ V I P G + V+ A +G +I
Sbjct: 216 ESLREPDFAFVAEEGV--RAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 263
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 27.3 bits (61), Expect = 5.1
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 62 FVSRLKEEGVVFIGPTA---------ECIR---GMGDKLESKKLAKEAGVNIIPG 104
F + L+ G+ + A +R + + + + +N+ PG
Sbjct: 336 FTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPG 390
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
protein structure initiative; 1.60A {Thermobifida fusca}
PDB: 2qvh_A*
Length = 327
Score = 27.0 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 79 ECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
E IR D L + V + G +R A + +A + G PV++
Sbjct: 180 ESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAA---LRLAEECGLPVVV 226
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
transferase; HET: SAM DTB; 3.40A {Escherichia coli}
SCOP: c.1.28.1
Length = 369
Score = 26.5 bits (59), Expect = 7.9
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 33 NVDKIIDAIRQTRADAVHP--GYGFLSENASFVSRLKEEGVVFIG---PTAE------CI 81
++ + ++ +A + G LSE+ RL G+ + T+
Sbjct: 132 DMPYLEQMVQGVKAMGLEACMTLGTLSESQ--AQRLANAGLDYYNHNLDTSPEFYGNIIT 189
Query: 82 -RGMGDKLESKKLAKEAGVNIIPGFNGII 109
R ++L++ + ++AG+ + G GI+
Sbjct: 190 TRTYQERLDTLEKVRDAGIKVCSG--GIV 216
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 26.6 bits (59), Expect = 8.0
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 81 IRGMGDKLESKKLAKEAG-VNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
R K K+ +NI+PGF + + + ++G +
Sbjct: 205 ARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSL 253
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 26.7 bits (60), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 92 KLAKEAG-----VNIIPGF 105
L KEAG VNI+PG+
Sbjct: 207 SLIKEAGFPPGVVNIVPGY 225
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 26.7 bits (60), Expect = 8.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 92 KLAKEAG-----VNIIPGF 105
L KEAG VNI+PGF
Sbjct: 206 NLIKEAGFPPGVVNIVPGF 224
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 26.6 bits (59), Expect = 8.3
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 20/91 (21%)
Query: 58 ENASFVSRLKEEGVVFI------------------GPTA--ECIRGMGDKLESKKLAKEA 97
++ + + L E V++I P A E + D + +L
Sbjct: 180 QDFTQLQLLAREQVLYIEEPFKDISMLDEVADGTIPPIALDEKATSLLDIINLIELYNVK 239
Query: 98 GVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
V + P G I ++ + G V+I
Sbjct: 240 VVVLKPFRLGGIDKVQTAIDTLKSHGAKVVI 270
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 26.8 bits (60), Expect = 8.6
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 5/19 (26%)
Query: 92 KLAKEAG-----VNIIPGF 105
+L +AG VNI+PG
Sbjct: 226 ELTLKAGIPKGVVNILPGS 244
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 26.5 bits (59), Expect = 8.8
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 62 FVSRLKEEGVVFIGPTA---------ECIR---GMGDKLESKKLAKEAGVNIIPG 104
VS L++ G+ + A +R + KK+ E +NI PG
Sbjct: 341 LVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPG 395
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 26.4 bits (58), Expect = 9.1
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 109 IRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRI 168
++ V V + + GG M+ G SS
Sbjct: 78 WAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSS----PILPGKHH 133
Query: 169 LVEKFIKNPRHI 180
LV F+K ++
Sbjct: 134 LVPGFLKYAEYM 145
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 26.4 bits (59), Expect = 9.4
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 22/94 (23%)
Query: 46 ADAVHPGYGFLSENASFVSRLKEEGVVF------IGPTAECIRGMGDKLESKKLAKEAGV 99
D + G + N + RL +E ++ +G IR + + AK+ V
Sbjct: 156 HDVRNTEDGGPT-NGTPFRRLLDEEIIEGQHLIQLG-----IREFSNSQAYEAYAKKHNV 209
Query: 100 NIIP-------GFNGIIRDADHCVEIARDIGYPV 126
NI G I++ + + +D +
Sbjct: 210 NIHTMDMIREKGLIPTIKEI---LPVVQDKTDFI 240
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 24.9 bits (55), Expect = 9.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 216 HAPMPGLVKSVNCKVGDQIMEGQELCVV 243
P P + +VG ++ G LC+V
Sbjct: 17 RTPSPDAKAFI--EVGQKVNVGDTLCIV 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.406
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,888,951
Number of extensions: 242583
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 155
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)