RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10619
(246 letters)
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Aquifex aeolicus [TaxId: 63363]}
Length = 114
Score = 86.1 bits (213), Expect = 3e-22
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 1 MLFPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENA 60
++ + RHVKLADEA IG +Y+N +II+ + ADA+HPGYGFL+ENA
Sbjct: 30 AIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINLALEVGADAIHPGYGFLAENA 88
Query: 61 SFVSRLKEEGVVFIGPTAECIRGMGD 86
F +E G+ FIGP + I MGD
Sbjct: 89 EFAKMCEEAGITFIGPHWKVIELMGD 114
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 84.9 bits (209), Expect = 1e-20
Identities = 45/97 (46%), Positives = 75/97 (77%)
Query: 87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
K SK++ K+AGV ++PG +G+++ + +AR+IGYPV++KA+AGGGG+G+RI N++
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
E ++ ++ +S+EA +FG +L+EKFI+NP+HIE Q
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQ 97
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 83.5 bits (206), Expect = 1e-19
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
D+ K+ G+ GI + + +A D+G+P +I+ S GG G IA N
Sbjct: 1 DRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 58
Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQG 184
+E F+ +L+++ + + E++
Sbjct: 59 EE----FEEICARGLDLSPTKELLIDESLIGWKEYEMEV 93
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 81.8 bits (201), Expect = 1e-19
Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGII-RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANN 144
DK+ + K+AGV +PG +G + D D IA+ IGYPV+IKAS GGGG+GMR+
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60
Query: 145 DQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
D E + ++ EA A+F +D + +EK+++NPRH+EIQ
Sbjct: 61 DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQ 99
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 170
Score = 76.3 bits (187), Expect = 7e-18
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 12 HVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEE-- 69
++++AD+ + + +Y NVD I+D + DAV G+G SEN +L +
Sbjct: 96 YIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKR 155
Query: 70 GVVFIGPTAECIRGM 84
V+FIGP +R +
Sbjct: 156 KVIFIGPPGNAMRSL 170
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 74.3 bits (182), Expect = 9e-18
Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 9 FQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
+HV LADE VCIGP + +SY+N+ II A T A A+HPGYGFLSENA+F +++
Sbjct: 38 DLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVER 97
Query: 69 EGVVFIGPTAECIRGMG 85
G +FIGP AE IR MG
Sbjct: 98 SGFIFIGPKAETIRLMG 114
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 77.5 bits (190), Expect = 9e-18
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
++ KL +EAG+ + + E DI V++K GG+G IA++
Sbjct: 1 ERSLEGKLLREAGLRVPKKY-----------ESPEDIDGTVIVKFPGARGGRGYFIASST 49
Query: 146 QEAIEGFKLSSQEAA-ASFGDDRILVEKFIKNPRHIE 181
+E + + + +E+++
Sbjct: 50 EEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCI 86
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 74.7 bits (183), Expect = 1e-16
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 91 KKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAIE 150
+ + + N + + VE A++IGYP++++AS GG+ M I ++ +
Sbjct: 3 QHAVERLKLKQPA--NATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEAD--- 57
Query: 151 GFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+ Q A + D +L++ F+ + +++
Sbjct: 58 -LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVD 89
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 67.6 bits (164), Expect = 3e-14
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
D+ +K K+AG+ + + E DI PV++K GGKG +A +
Sbjct: 1 DRNLERKWLKKAGIRVPEVY-----------EDPDDIEKPVIVKPHGAKGGKGYFLAKDP 49
Query: 146 QEAIEGFKLSSQEAAAS---------FGDDRILVEKFIKNPRHIEIQ 183
++ + + + + + E++
Sbjct: 50 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELE 96
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 59.7 bits (143), Expect = 2e-11
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 24/86 (27%)
Query: 85 GDKLESKKLAKEAGVNIIPG------------------------FNGIIRDADHCVEIAR 120
GDK+ S +A+ A V IP G + ++ A+
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 121 DIGYPVMIKASAGGGGKGMRIANNDQ 146
IG+PVMIKAS GGGGKG+R ++
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVEREE 86
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 58.4 bits (140), Expect = 4e-11
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
K + +AG+ + D + + + GYPV++K G G +A
Sbjct: 1 KWATSVALAKAGLPQPKT--ALATDREEALRLMEAFGYPVVLK--PVIGSWGRLLAXXXX 56
Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIE 181
+E F ++++++ P
Sbjct: 57 XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDI 91
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 48.3 bits (114), Expect = 1e-07
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)
Query: 87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
K +K + + + + R+ G P++IKA GKG+ +A +
Sbjct: 2 KAFTKDFLARHKIPTAEY--QNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 59
Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEI----QGTTYKFLIQTEKEFEYAKL 202
EA A RI++E+F+ I + + K
Sbjct: 60 EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKD 119
Query: 203 LPPKPKLDETKILHAPMPGLVKSVNCKVGDQIME 236
P ++P P + V+ + ++I+
Sbjct: 120 TGPNTG---GMGAYSPAPVVTDDVHQRTMERIIW 150
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 47.3 bits (111), Expect = 4e-07
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 8/153 (5%)
Query: 86 DKLESKKLAKEAGVNIIPG--FNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIAN 143
DK +K+L G+ + + +I ++G V +KA+ G G+
Sbjct: 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 60
Query: 144 NDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAKLL 203
N +E E S Q D ++L+E+ + R +E+ + +E
Sbjct: 61 NAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQ 114
Query: 204 PPKPKLDETKILHAPMPGLVKSVNCKVGDQIME 236
+ + + ++ ++ +
Sbjct: 115 GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTK 147
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 44.3 bits (103), Expect = 4e-06
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 91 KKLA-KEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
++LA +E + E DIGYP ++K GKG + ++
Sbjct: 6 RRLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLA 63
Query: 150 EGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
+ +K + G R++VE +K I +
Sbjct: 64 QAWK--YAQQGGRAGAGRVIVEGVVKFDFEITLL 95
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 43.9 bits (102), Expect = 5e-06
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 87 KLESKKLAKEAGVNIIPGF-----NGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRI 141
KL SK L + AG+ + P +D + +G PV++K S G GM
Sbjct: 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60
Query: 142 ANNDQEAIEGFKLS 155
+ + +L+
Sbjct: 61 VVAENALQDALRLA 74
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 42.8 bits (99), Expect = 1e-05
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 11/98 (11%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANND 145
D+L K+L + + P ++ + + +G ++K GG +
Sbjct: 1 DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRA 58
Query: 146 QEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
E E + +VE+ I + +
Sbjct: 59 NE---------TEQLPAECYGECIVEQGINFSGEVSLV 87
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 42.4 bits (98), Expect = 1e-05
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 86 DKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMR 140
DK + +AK AG+ + +I D +A YPV +K + G G++
Sbjct: 1 DKSLTYIVAKNAGIATPAFW--VINKDDR--PVAATFTYPVFVKPARSGSSFGVK 51
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 42.4 bits (98), Expect = 2e-05
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 12/111 (10%)
Query: 77 TAECIRGMGDK----LESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASA 132
+ E I DK + + K G P + E+ +PV++K
Sbjct: 2 SLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQ--TYYPNHREMLTLPTFPVVVKIGH 59
Query: 133 GGGGKGMRIANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
G G N + + + E FI I +Q
Sbjct: 60 AHSGMGKVKVENHYDFQDIAS------VVALTQTYATAEPFIDAKYDIRVQ 104
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 37.7 bits (86), Expect = 6e-04
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 87 KLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQ 146
K+ +K+ K+ G+ F + + E + P +IKA GKG+ I ++ +
Sbjct: 2 KVYAKRFMKKYGIRT-ARF-EVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKE 59
Query: 147 EAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQ 183
E IE +++++F+ +
Sbjct: 60 ETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMA 96
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 37.2 bits (85), Expect = 9e-04
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY-PVMIKAS----AGGGGKGMRIAN 143
++K+L G+ G+ E A IG P ++K G G+++ N
Sbjct: 7 QAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVN 64
Query: 144 NDQE 147
+ ++
Sbjct: 65 SKED 68
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 34.5 bits (79), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ AP+ G V + K GD + GQ + V+
Sbjct: 11 IPAPLAGTVSKILVKEGDTVKAGQTVLVL 39
Score = 29.1 bits (65), Expect = 0.098
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 182 IQGTTYKFLIQTEKEFEYAKLLPPKPKLDETKILHAPMPGLVKSVNCKVGDQIMEGQELC 241
+ GT K L++ + + + + ++AP G V+ V K D + GQ L
Sbjct: 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLI 74
Query: 242 VVG 244
+G
Sbjct: 75 KIG 77
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 34.6 bits (78), Expect = 0.007
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 89 ESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYP-VMIKASAGGGGKG 138
+SKKL + GV + F + A+ +E A+ + +++KA GG+G
Sbjct: 8 QSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRG 56
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 29.5 bits (66), Expect = 0.092
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ A G VK++ + G + + L V+
Sbjct: 51 IEADKSGTVKAILVESGQPVEFDEPLVVI 79
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase
{Enterobacter cloacae [TaxId: 550]}
Length = 363
Score = 29.5 bits (65), Expect = 0.36
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASF 62
+ + G + A +Y +K D I + DAV G +++ N
Sbjct: 274 LAGGKPYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIA-NPDL 331
Query: 63 VSRLKE 68
V+RL++
Sbjct: 332 VARLQK 337
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]}
Length = 380
Score = 29.5 bits (65), Expect = 0.41
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEG 70
+ N + + A++Q AD V G F++ N VSR K +G
Sbjct: 307 NGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIA-NPDLVSRFKIDG 353
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 27.4 bits (61), Expect = 0.50
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVVG 244
+ +P+ G V + G GQ L +
Sbjct: 47 IPSPVKGKVLEILVPEGTVATVGQTLITLD 76
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 28.8 bits (63), Expect = 0.57
Identities = 6/46 (13%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
P + Y + +K+I+ + + AD + ++ + ++++
Sbjct: 292 KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA-DPFLPQKVEQ 336
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 28.7 bits (63), Expect = 0.58
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
GP + A ++ +++ + + + G F+S N V RL++
Sbjct: 318 GPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS-NPDLVDRLEK 362
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 207
Score = 27.9 bits (62), Expect = 0.99
Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 22/180 (12%)
Query: 39 DAIRQTRADAVHPGYGFLSENASFVSRLKE-EGVVFIGPTAECIRGMGDKLESKK----- 92
+ I++ P + ++A + K + +VF+ R + +SK
Sbjct: 24 ETIKEKLKSFEIPVVHYRYKDAEIETIWKCYDAIVFVMALEGATRIVCKYAKSKTEDPAI 83
Query: 93 -LAKEAGVNIIPGFNGIIRDADHCVEIARDIG-YPVMIKASAGGGG---------KGMRI 141
+ +IP G D E++ + P++ A+ G +I
Sbjct: 84 VCIDDKINYVIPLLGGHWGANDIARELSVILNSTPIITTAAEIKGKLSIERIANILIAKI 143
Query: 142 ANNDQEAIEGFKLSSQEAAASFGDDRILVEKFIKNPRHIEIQGTTYKFLIQTEKEFEYAK 201
N + L E+ G D + P +I++ ++I + EY
Sbjct: 144 INPENIVKINAALLRDESICIDGIDVN-----VNFPENIKVNSEECSYIISLRGDKEYKD 198
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 28.2 bits (61), Expect = 1.1
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 69 EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104
EG F+ + + D + L +E GV IP
Sbjct: 313 EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPL 348
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 27.7 bits (60), Expect = 1.3
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 92 KLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMIKASAGGGG 136
+ KEA +N++ + G + + ++A + G V
Sbjct: 52 RDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTP 96
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 27.6 bits (60), Expect = 1.4
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 4 PDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFV 63
P P V + P V + D + + AD V FL+ +A +
Sbjct: 262 PVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA-DAELL 320
Query: 64 SRLKE 68
S+ +
Sbjct: 321 SKAQS 325
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 27.4 bits (59), Expect = 1.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 215 LHAPMPGLVKSVNCKVGDQIMEGQELCVV 243
+ + G++ K G + GQ+L +
Sbjct: 18 VRPQVNGIILKRLFKEGSDVKAGQQLYQI 46
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 25.9 bits (57), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 216 HAPMPGLVKSVNCKVGDQIMEGQELCVV 243
AP G+VK + VGD++ G + +
Sbjct: 47 PAPFAGVVKELKVNVGDKVKTGSLIMIF 74
Score = 24.0 bits (52), Expect = 7.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 223 VKSVNCKVGDQIMEGQELCVV 243
V V KVGD++ Q L V
Sbjct: 17 VTEVMVKVGDKVAAEQSLITV 37
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 25.2 bits (55), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 212 TKILHAP---MPGLVKSVNCKVGDQIMEGQELCVV 243
++I+ P G V + K GD I Q L V+
Sbjct: 1 SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVL 35
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 26.6 bits (58), Expect = 2.5
Identities = 6/58 (10%), Positives = 10/58 (17%), Gaps = 11/58 (18%)
Query: 5 DPCVFQRHVKLADEAVC-----------IGPPVAAQSYINVDKIIDAIRQTRADAVHP 51
D +LA P ++ + I H
Sbjct: 136 DLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHG 193
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 26.8 bits (58), Expect = 2.8
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 69 EGVVFIGPTAECIRGMGDKLESKKLAKEAGVNIIPG 104
+G +I P E DK + A V + G
Sbjct: 324 QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHG 359
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.5 bits (58), Expect = 2.8
Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 25/150 (16%)
Query: 7 CVFQRHVKLADEA---------VCIGPPVAAQSY-INVDKIIDAIRQT----------RA 46
CV +VKLA E +G P+ A + I A+
Sbjct: 69 CVNPCYVKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVINVGM 128
Query: 47 DAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII---P 103
+ S V +K + V I T +K+ + ++K AG + +
Sbjct: 129 LKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL--DTEEKIAACVISKLAGAHFVKTST 186
Query: 104 GFNGIIRDADHCVEIARDIGYPVMIKASAG 133
GF A+ + +G + +KAS G
Sbjct: 187 GFGTGGATAEDVHLMKWIVGDEMGVKASGG 216
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 25.9 bits (56), Expect = 3.4
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 3 FPDPCVFQRHVKLADEAVCIGPPVAAQSYINVDKIIDAIRQT 44
F V AD + + S V II AI++T
Sbjct: 94 FNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKT 135
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 26.2 bits (57), Expect = 3.6
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 22 IGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFI 74
GPPV+ + + I AI + RADAV L + + L + +
Sbjct: 27 RGPPVSCIKRDSPIQCIQAIAENRADAV-----TLDGGFIYEAGLAPYKLRPV 74
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 26.3 bits (57), Expect = 4.2
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 46 ADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII 102
A A+ + + + + ++ IGPT G+G +++LAK A I
Sbjct: 27 AIALRNRWRRMQLQEPLRHEVTPKNILMIGPT-----GVGKTEIARRLAKLANAPFI 78
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 26.1 bits (56), Expect = 4.2
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVVFIGPTAECIR 82
A + + ++ RAD + G L + F ++ I + R
Sbjct: 277 MATGAVGMITDGSMAEEILQNGRADLIFIGRELLR-DPFFARTAAKQLNTEIPAPVQYER 335
Query: 83 G 83
G
Sbjct: 336 G 336
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 26.0 bits (56), Expect = 4.3
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 25 PVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
+ + + + ADAV G F++ N R +
Sbjct: 298 GLIYCGNYDAGRAQARLDDNTADAVAFGRPFIA-NPDLPERFRL 340
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 26.0 bits (55), Expect = 5.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 72 VFIGPTAECIRGMGDKLE-SKKLAKEAGVNIIPG 104
+ E R + +E +KL +E V ++PG
Sbjct: 343 LMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPG 376
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 25.7 bits (56), Expect = 5.0
Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 23/148 (15%)
Query: 7 CVFQRHVKLADE-------AVCIGPPVAAQSY-INVDKIIDAIRQT----------RADA 48
CV HVKLA IG P+ + V + ++A+R A
Sbjct: 38 CVNPYHVKLASSIAKKVKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFK 97
Query: 49 VHPGYGFLSENASFVSRLKEEGVVFIGPTAECIRGMGDKLESKKLAKEAGVNII---PGF 105
+ E I T + ++ ++ EAG + I GF
Sbjct: 98 SEKYDFVVEELKEIFRETPSAVHKVIVETPYL--NEEEIKKAVEICIEAGADFIKTSTGF 155
Query: 106 NGIIRDADHCVEIARDIGYPVMIKASAG 133
+ I + +KAS G
Sbjct: 156 APRGTTLEEVRLIKSSAKGRIKVKASGG 183
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Aquifex aeolicus [TaxId: 63363]}
Length = 215
Score = 25.5 bits (55), Expect = 5.1
Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 13 VKLADEAVCIGPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKEEGVV 72
+A+ A+ + + Y+N++ + + +++ D+V F+ ++ ++ E+
Sbjct: 102 ENIAERAILLAEEPPLKPYVNINFMSEIVKEMVNDSVI---SFIQQDTLLAKKVIEKDDT 158
Query: 73 FIGPTAECIRGMGDKLESKKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGY 124
+ R + + + +++ R ADH +A Y
Sbjct: 159 VDELYHQLERELMTYVLEDPRNIKRAMHLSFVARHYERIADHAENVAEAAIY 210
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 25.7 bits (55), Expect = 5.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 23 GPPVAAQSYINVDKIIDAIRQTRADAVHPGYGFLSENASFVSRLKE 68
+ + A+ + RAD V G F+S N R +
Sbjct: 292 KGTFIVAGGYDREDGNRALIEDRADLVAYGRLFIS-NPDLPKRFEL 336
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
{Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 25.9 bits (55), Expect = 5.8
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 77 TAECIRGMGDKLESKKLAKEAGVNIIPG 104
+ D +K + K G+ IP
Sbjct: 350 LTQETDARKDYRFTKWMTKSVGLQGIPP 377
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 25.4 bits (55), Expect = 7.2
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 79 ECIRGMGDKLESKKLAKEAG-----VNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
G+ K + + +NI+PGF + + + ++G +
Sbjct: 198 NMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSL 252
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 24.0 bits (52), Expect = 7.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 216 HAPMPGLVKSVNCKVGDQIMEGQELCVV 243
A + G+VK V KVGD+I EG + VV
Sbjct: 48 PAEVAGVVKEVKVKVGDKISEGGLIVVV 75
>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
{Escherichia coli [TaxId: 562]}
Length = 358
Score = 25.5 bits (55), Expect = 7.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 102 IPGFNGI-IRDADHCVEIARDIGYPVMIKASAGG----GGKGMRIANNDQEAIEG 151
+P N + + +E A + PV+++ S GG GKG++ AI G
Sbjct: 31 LPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILG 85
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 25.3 bits (54), Expect = 7.8
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 92 KLAKEAGVNIIPG----FNGIIRDADHCVEIARDIGYP 125
++AG + G + + + C++I + +P
Sbjct: 177 AAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFP 214
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 25.2 bits (54), Expect = 8.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 33 NVDKIIDAIRQTRADAV------HPGYGFLS 57
+++K+ + IR AD V HPG +
Sbjct: 3 SIEKVANCIRCLAADIVQGGKSGHPG-TPMG 32
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 25.1 bits (54), Expect = 8.7
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 110 RDADHCVEIARDIGYPVMIKASAGGGGKGMRIANNDQEAI 149
AD+ I Y M++ G+ + +++
Sbjct: 191 IIADYATNIVEVSVY--MVQ------GEAYKCYHDELLLF 222
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 25.4 bits (55), Expect = 8.8
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 91 KKLAKEAGVNIIPGFNGIIRDADHCVEIARDIGYPVMI 128
+ K +N++ GF + + + + P +
Sbjct: 212 GQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSL 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.406
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 936,527
Number of extensions: 44461
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 69
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)