BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10620
         (589 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NK3|A Chain A, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.6
           A Resolution
 pdb|3NK3|B Chain B, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.6
           A Resolution
 pdb|3NK4|A Chain A, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.0
           A Resolution
 pdb|3NK4|B Chain B, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.0
           A Resolution
          Length = 297

 Score = 38.9 bits (89), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 33/234 (14%)

Query: 251 VTVHCKDTRIAVQVR-----TNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCN 305
           V V C++ ++ V V      T +  N     LG +  C    LN+    +       +C 
Sbjct: 4   VAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGPA-ACKHSSLNAAHNTVTFAAGLHECG 62

Query: 306 TQSVTGVFSNTVVLQ----------HHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRD 355
             SV  V  +T++ +           + V++     +  ++C Y    +  +  + P   
Sbjct: 63  --SVVQVTPDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAIRPTWS 120

Query: 356 PEMISITSAPEAPPPRIRILD---TKSREVETVRIGDKLTFRIEIPEET--PYGIFARSC 410
           P   S  SA E     +R++    +  R     ++GD L  + E+  E   P  +F  SC
Sbjct: 121 P-FNSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSC 179

Query: 411 VAMAK---DSKSTFQIIDDEGCPVDPNI------FPSFTPDGNALQSVYEAFRF 455
           VA      DS   + IID  GC VD  +      F +  P  + L+   + FRF
Sbjct: 180 VAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRFRIDVFRF 233


>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
           Plasminogen
 pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
           Plasminogen
 pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
           Plasminogen
 pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
          Length = 791

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 117 DDKV-AQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLY 159
           DD V  Q ASL     K+L   +   C   CE + EF CR+F Y
Sbjct: 4   DDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQY 47



 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 40 EACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTT 76
          E C A C  +  FTCR+ +Y+    QC +   +R+++
Sbjct: 28 EECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSS 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,101,683
Number of Sequences: 62578
Number of extensions: 689905
Number of successful extensions: 1144
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 4
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)