BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10620
(589 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03755|CUT1_CAEEL Cuticlin-1 OS=Caenorhabditis elegans GN=cut-1 PE=2 SV=2
Length = 424
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 19/229 (8%)
Query: 253 VHCKDTRIAVQVRTNKPFNGRIYALGRSET--CNIDVLNSDLFRLDLTMSGQDCNTQSV- 309
V C I V T PF G +Y G + C D + ++L CNT
Sbjct: 31 VECGPNSITVNFNTRNPFEGHVYVKGLYDQAGCRSDEGGRQVAGIELPFD--SCNTARTR 88
Query: 310 ----TGVF-SNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSA 364
GVF S TVV+ H +TK D+ Y+++C Y S K ++ + + D T
Sbjct: 89 SLNPKGVFVSTTVVISFHPQFVTKVDRAYRIQCFYMESDKTVS-TQIEVSDLTTAFQTQV 147
Query: 365 PEAPPPRIRILDT--KSREVETVRIGDKLTFRIEIPEET--PYGIFARSCVAMAKDSKST 420
P + ILD + ++ IG ++ + ET + SC + + T
Sbjct: 148 VPMPVCKYEILDGGPSGQPIQFATIGQQVYHKWTCDSETTDTFCAVVHSC-TVDDGNGDT 206
Query: 421 FQIIDDEGCPVDPNIFPS--FTPDGNALQSVYEAFRFTESYGVIFQCNV 467
QI+++EGC +D + + + D A Q + +++ + + +QC +
Sbjct: 207 VQILNEEGCALDKFLLNNLEYPTDLMAGQEAH-VYKYADRSQLFYQCQI 254
>sp|P79762|ZP3_CHICK Zona pellucida sperm-binding protein 3 OS=Gallus gallus GN=ZP3 PE=1
SV=4
Length = 437
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 33/237 (13%)
Query: 249 YDVTVHCKDTRIAVQVR-----TNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQD 303
+ V V C++ ++ V V T + N LG + C LN+ + +
Sbjct: 52 HPVAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGPA-ACKHSSLNAAHNTVTFAAGLHE 110
Query: 304 CNTQSVTGVFSNTVVLQ----------HHSVVMTKADKIYKVKCTYDMSSKNITFGMMPI 353
C SV V +T++ + + V++ + ++C Y + + P
Sbjct: 111 CG--SVVQVTPDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRRENVSSNAIRPT 168
Query: 354 RDPEMISITSAPEAPPPRIRILD---TKSREVETVRIGDKLTFRIEIPEE--TPYGIFAR 408
P S SA E +R++ + R ++GD L + E+ E P +F
Sbjct: 169 WSP-FNSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVD 227
Query: 409 SCVAMAK---DSKSTFQIIDDEGCPVDPNI------FPSFTPDGNALQSVYEAFRFT 456
SCVA DS + IID GC VD + F + P + L+ + FRF
Sbjct: 228 SCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRFRIDVFRFA 284
>sp|Q01177|PLMN_RAT Plasminogen OS=Rattus norvegicus GN=Plg PE=2 SV=2
Length = 812
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 122 QYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLY 159
Q ASLH K+L + A C CE E +F+CRSF Y
Sbjct: 29 QGASLHSLTKKQLAAGSIADCLAKCEGETDFICRSFQY 66
>sp|Q10125|YSM5_CAEEL Uncharacterized protein F52C9.5 OS=Caenorhabditis elegans
GN=F52C9.5 PE=4 SV=3
Length = 618
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 18 FERVPNKMIRGLDNALIYTSTKEACLAACLNEHR---FTCRSVEYNYV--TLQCHLSDSD 72
F R P ++ G ++ + + E C CLN ++ F C S Y + L C L+ +
Sbjct: 356 FSRHPQMILVGFAESVSDSPSFEHCFDTCLNSYQLFGFNCTSGMYYFEENQLNCILNSEN 415
Query: 73 RRTTGQYVQFVDAQGVDYFENLCLKP-----NQGCKGNRLFQVPRIGVADDKVAQY 123
R T + + VDYFE C P + G R F+ IG AD V +
Sbjct: 416 RNTQRELFTEENTDIVDYFEVECTTPRSKQSKRKMAGVRNFETDAIG-ADKMVTDH 470
>sp|Q1MGI5|Y2444_RHIL3 UPF0317 protein RL2444 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=RL2444 PE=3 SV=1
Length = 269
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 198 GQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKD 257
R GS+ ++G L ++ D L RN C G + D
Sbjct: 21 ASRNGSWTRETSGAALGYVQANLAILPSALADDFLRFCVRNPKACPLVGISEKGSPRIPD 80
Query: 258 TRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTV 317
+ + +RT+ P R++ G D+ SDL+ DL + C+ + +N +
Sbjct: 81 LGVDLDIRTDVP-RYRVWEDGELAAEPTDI--SDLWSDDLVVFAIGCSFSFEEALIANGI 137
Query: 318 VLQH----HSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIR 373
L+H H+V M + + ++C + G P P ++S+ P AP IR
Sbjct: 138 GLRHVAEGHNVAMYRTN----IEC--------VPAG--PFSGPMVVSMR--PLAPADAIR 181
Query: 374 ILDTKSR----EVETVRIGDKLTFRIEIPEETPYG 404
+ SR + IG + IE ++ YG
Sbjct: 182 AVQITSRMPAVHGAPIHIGLPASIGIENLDQPDYG 216
>sp|Q29485|PLMN_ERIEU Plasminogen OS=Erinaceus europaeus GN=PLG PE=2 SV=1
Length = 810
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 113 IGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLY 159
I + D Q ASL K+L V + C + CE E F+CRSF Y
Sbjct: 20 IPLDDYVTTQGASLCSSTKKQLSVGSTEECAVKCEKETSFICRSFQY 66
>sp|Q09276|DYF8_CAEEL Protein dyf-8 OS=Caenorhabditis elegans GN=dyf-8 PE=4 SV=2
Length = 446
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 37/230 (16%)
Query: 316 TVVLQHHS-VVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRI 374
TVVL+ ++ + K ++ V C Y + K I F + E+I+ T P P++ +
Sbjct: 115 TVVLEDNADLSFGKTTRLNHVFCLYTRNVKTIRFSDVS-NGHEVIASTGG--KPKPKVEM 171
Query: 375 L---DTKSREVETVRIGDKLTFRIEI-PEETPYGIFARSC-------VAMAKDSKSTFQI 423
L + ++ R + + F I + P+ +GI + C ++ K TF
Sbjct: 172 LFRSTDSGKTLQAARENEFVEFFIALSPDSAYHGISPKECTFSDREDISAPDAKKITFV- 230
Query: 424 IDDEGCPVDPN---IFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGP------C 474
GCPV+ I P + S + FRF V C V+ CL C
Sbjct: 231 --QGGCPVNGMNDIIDPLANVNDQIYFSKFRTFRFGNQSTVFVHCQVQVCLKKDECSKTC 288
Query: 475 EPAVCEWG----------RESVESWGKRRRRSVANDTESSDDMTLSQEIL 514
V + + S+ +R RS D S D+T S ++
Sbjct: 289 YKKVSDSNLTAERLRFRHKRSITDLERRTTRSAPTDDNGSLDLTNSLTVV 338
>sp|Q15195|PLGA_HUMAN Plasminogen-like protein A OS=Homo sapiens GN=PLGLA PE=2 SV=1
Length = 96
Score = 33.9 bits (76), Expect = 3.4, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 117 DDKV-AQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLY 159
DD V AQ ASL K+L + C CE + EF CR+F Y
Sbjct: 23 DDYVNAQGASLFSVTKKQLGAGSREECAAKCEEDKEFTCRAFQY 66
>sp|Q02325|PLGB_HUMAN Plasminogen-like protein B OS=Homo sapiens GN=PLGLB1 PE=1 SV=1
Length = 96
Score = 33.5 bits (75), Expect = 5.4, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 38 TKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTT 76
++E C A C + FTCR+ +Y+ QC + +R+++
Sbjct: 45 SREECAAKCEEDKEFTCRAFQYHSKEQQCVIMAENRKSS 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,357,285
Number of Sequences: 539616
Number of extensions: 9201780
Number of successful extensions: 18290
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18269
Number of HSP's gapped (non-prelim): 24
length of query: 589
length of database: 191,569,459
effective HSP length: 123
effective length of query: 466
effective length of database: 125,196,691
effective search space: 58341658006
effective search space used: 58341658006
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)