Query psy10620
Match_columns 589
No_of_seqs 334 out of 709
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:59:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk4_A ZONA pellucida 3; ferti 99.9 4.2E-23 1.4E-27 212.4 22.8 230 250-483 3-263 (297)
2 3qw9_A Transforming growth fac 99.5 3.4E-13 1.2E-17 127.3 13.8 112 369-483 6-136 (176)
3 3hms_A Hepatocyte growth facto 98.3 6.7E-07 2.3E-11 75.5 6.2 78 14-93 13-96 (101)
4 3hms_A Hepatocyte growth facto 97.3 0.00018 6.1E-09 60.7 4.7 44 133-180 36-81 (101)
5 3sp8_A Hepatocyte growth facto 97.3 0.00041 1.4E-08 68.8 7.9 77 15-93 14-96 (264)
6 2yil_A Microneme antigen L2; s 96.8 0.0045 1.6E-07 55.4 9.0 110 33-177 25-134 (138)
7 2f83_A Coagulation factor XI; 96.8 0.0045 1.5E-07 69.4 11.2 149 4-175 102-260 (625)
8 4a5v_A MIC4, micronemal protei 96.6 0.0048 1.6E-07 56.9 7.6 126 16-175 10-136 (161)
9 2f83_A Coagulation factor XI; 96.5 0.013 4.5E-07 65.6 12.6 136 21-176 25-171 (625)
10 4dur_A Plasminogen, serine pro 96.2 0.0044 1.5E-07 71.2 6.1 73 17-93 5-77 (791)
11 2jwa_A Receptor tyrosine-prote 95.8 0.012 4.2E-07 41.5 4.7 35 552-586 10-44 (44)
12 2qj2_A Hepatocyte growth facto 94.8 0.062 2.1E-06 50.2 7.4 60 15-74 14-79 (184)
13 3sp8_A Hepatocyte growth facto 94.4 0.036 1.2E-06 54.8 5.2 45 132-180 35-81 (264)
14 2l2t_A Receptor tyrosine-prote 94.0 0.08 2.7E-06 37.4 4.7 33 553-585 9-42 (44)
15 2ks1_B Epidermal growth factor 93.9 0.032 1.1E-06 39.5 2.5 33 554-586 11-43 (44)
16 2ll3_A Micronemal protein 4; c 93.0 0.083 2.8E-06 42.6 4.0 37 32-70 25-61 (82)
17 2ll3_A Micronemal protein 4; c 91.1 0.17 5.8E-06 40.8 3.7 37 132-174 25-61 (82)
18 4dur_A Plasminogen, serine pro 90.3 0.22 7.4E-06 57.2 5.1 46 131-180 19-64 (791)
19 2qj2_A Hepatocyte growth facto 87.8 0.6 2.1E-05 43.5 5.2 41 132-176 35-77 (184)
20 1iij_A ERBB-2 receptor protein 87.7 0.2 6.8E-06 33.4 1.4 28 553-581 7-35 (35)
21 4a5v_A MIC4, micronemal protei 87.2 0.4 1.4E-05 43.9 3.6 59 9-72 77-137 (161)
22 2yil_A Microneme antigen L2; s 82.6 0.84 2.9E-05 40.6 3.4 37 133-175 25-61 (138)
23 2k1k_A Ephrin type-A receptor 78.7 2.2 7.5E-05 29.0 3.6 27 554-580 11-37 (38)
24 1hky_A MIC-5, etmic5, micronem 66.8 7.4 0.00025 29.4 4.4 45 30-78 25-69 (86)
25 2k9y_A Ephrin type-A receptor 47.9 14 0.00048 25.1 3.0 7 560-566 20-26 (41)
26 2knc_A Integrin alpha-IIB; tra 45.7 32 0.0011 25.2 4.6 21 554-574 13-33 (54)
27 2jo1_A Phospholemman; FXYD1, N 45.6 35 0.0012 26.2 4.9 30 555-584 18-47 (72)
28 2l34_A TYRO protein tyrosine k 43.9 29 0.00099 22.7 3.8 24 555-578 8-31 (33)
29 1hky_A MIC-5, etmic5, micronem 43.7 17 0.00058 27.4 3.0 39 135-181 30-68 (86)
30 2lp1_A C99; alzheimer'S D memb 43.3 7.1 0.00024 33.0 0.0 32 554-586 31-62 (122)
31 2jp3_A FXYD domain-containing 36.4 44 0.0015 25.4 4.2 20 555-574 19-38 (67)
32 2l8s_A Integrin alpha-1; trans 35.2 54 0.0019 23.9 4.4 21 554-574 10-30 (54)
33 3j1r_A Archaeal adhesion filam 33.4 49 0.0017 20.2 3.2 17 560-576 5-22 (26)
34 2k13_X Saratin; collagen bindi 31.9 1.6E+02 0.0055 22.8 6.8 60 15-78 6-65 (103)
35 2llm_A Amyloid beta A4 protein 32.4 14 0.00047 25.6 0.0 21 553-573 17-37 (43)
36 1pfi_A Major coat protein of P 26.0 1E+02 0.0034 21.1 4.1 26 554-579 20-45 (46)
37 2r5o_A Putative ATP binding co 24.7 98 0.0033 28.2 5.6 29 371-399 52-80 (188)
38 1i8n_A Anti-platelet protein; 24.2 1.4E+02 0.0049 23.9 5.5 60 17-76 46-106 (126)
39 3arc_X Photosystem II PSBX pro 24.1 1.2E+02 0.0041 20.6 4.2 15 554-568 8-22 (39)
No 1
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*
Probab=99.91 E-value=4.2e-23 Score=212.36 Aligned_cols=230 Identities=21% Similarity=0.399 Sum_probs=155.4
Q ss_pred eeEEEecCCeEEEEEEeCCCCcc------eEeecCCCCCCceeecCCceEEEEEEecCCCCCccee--cc--EEEEEEEE
Q psy10620 250 DVTVHCKDTRIAVQVRTNKPFNG------RIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSV--TG--VFSNTVVL 319 (589)
Q Consensus 250 ~v~v~C~~~~m~V~v~t~~~F~G------~iy~kg~~~~C~~~~~~~~~~~l~l~~~~~~Cg~~~~--~g--~ysn~Vvv 319 (589)
.|+|+|+++.|.|.|...-.-.| .++.. .+.|++...+.....+.|.+++.+||+... .+ +|+|+|+.
T Consensus 3 ~V~V~C~~~~m~V~V~k~~l~~~~~i~~~~L~L~--d~~C~~~~~~~~~~~~~f~~~l~~CGT~~~~~~~~iiY~N~l~~ 80 (297)
T 3nk4_A 3 PVAVQCQEAQLVVTVHRDLFGTGRLINAADLTLG--PAACKHSSLNAAHNTVTFAAGLHECGSVVQVTPDTLIYRTLINY 80 (297)
T ss_dssp SEEEEECSSEEEEEEESCCSCSSCCCCGGGEEET--TTTBCCSEEETTTTEEEEEEETTCTTCEEEECSSEEEEEEEEEE
T ss_pred cEEEEeCCCEEEEEEEHHHhCCCCccccceeEEC--CCCCCCeeeCCCCcEEEEEecCCCCCceeEecCCEEEEEEEEEE
Confidence 47999999999999986332222 23343 468998765411113566668999999753 22 79999998
Q ss_pred eecC----eeeeecCeEEEEEeEecCCCceeeec-ceecCCCceeEEecCCCCCCcEEEEecCC-CCe--eeeeecCCEE
Q psy10620 320 QHHS----VVMTKADKIYKVKCTYDMSSKNITFG-MMPIRDPEMISITSAPEAPPPRIRILDTK-SRE--VETVRIGDKL 391 (589)
Q Consensus 320 q~h~----~i~T~~D~~~~v~C~y~~~~~~Vs~~-~~p~~~~~~~~i~~~~~~p~~~m~i~~~~-g~~--v~~v~vGd~l 391 (589)
...+ .|++.....++|+|.|+.. .+|+.. +.|...+-...+ ...+...+.|+++..+ ..+ ...+.+||+|
T Consensus 81 ~~~~~~~~~ItR~~~~~l~~~C~Y~~~-~~vs~~~~~p~~~~~~~~~-~~~g~~~~~m~l~~d~~~~~~~~~~~~l~~~l 158 (297)
T 3nk4_A 81 DPSPASNPVIIRTNPAVIPIECHYPRR-EQVSSNAIRPTWSPFNSAL-SAEERLVFSLRLMSDDWSTERPFTGFQLGDIL 158 (297)
T ss_dssp CCCCCSSTTEESSCCEEEEEEEEEEC-----------CCBCTTC-------CCCCEEEEEECTTSSSBCCSCCBCTTCEE
T ss_pred eccCCCCCceEecccEEEEEEEEEcCC-CccccccCcCccccccccc-ccccceEEEEEeccCCCcccccCCcccCCCEE
Confidence 7543 3666678899999999964 456543 233322211111 1224457899998642 222 2356899999
Q ss_pred EEEEEEcC--CCcccEEEeEEEEEcC---CCCceEEEEeCCCCCCCCCCC---Cccc-c--cCceeEEEEEEEEEcc--c
Q psy10620 392 TFRIEIPE--ETPYGIFARSCVAMAK---DSKSTFQIIDDEGCPVDPNIF---PSFT-P--DGNALQSVYEAFRFTE--S 458 (589)
Q Consensus 392 ~l~~~~~~--~~~~~i~V~~C~A~d~---~~~~~~~LID~~GCp~D~~i~---~~~~-~--~~~~l~~~f~AFKFp~--s 458 (589)
|+++++.. +..+.++|++|||++. .+..+|.||+.+|||.|.++. ..|. + ....+++.|+||||++ .
T Consensus 159 yvev~v~~~~~~~l~l~l~~C~ATps~~~~~~~~y~lI~~~GC~~d~~~~~~~s~~~~~~~~~~~~rF~~~~F~F~~~~~ 238 (297)
T 3nk4_A 159 NIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRFRIDVFRFAGDNR 238 (297)
T ss_dssp EEEEEECCTTBCCEEEEEEEEEEESSSCTTSSSEEEEEBTTTEEGGGGSTTCCCEECSSCSSTTEEEEEEECCEETTCSS
T ss_pred EEEEEEecCCCCCEEEEEeeEEEeCCCCccCCceEEEEccCCCCcCCccccceeEEecCCCCCceEEEEEEeEeccCCCC
Confidence 99999974 4689999999999964 345799999669999998875 2343 2 3467899999999998 6
Q ss_pred ceEEEEEEEEEecCCCCCCCCCCCC
Q psy10620 459 YGVIFQCNVKYCLGPCEPAVCEWGR 483 (589)
Q Consensus 459 ~~V~f~C~V~vC~~~C~p~~C~~~~ 483 (589)
+.|||||.|.+|...=.+..|..++
T Consensus 239 ~~vylhC~v~vC~~~~~~~~C~~~C 263 (297)
T 3nk4_A 239 NLIYITCHLKVTPADQGPDPQNKAC 263 (297)
T ss_dssp CEEEEEEEEEEEETTCCCBTTBCCE
T ss_pred CeEEEEEEEEEECCCCCCCcccCcC
Confidence 8999999999998643345566555
No 2
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=99.47 E-value=3.4e-13 Score=127.31 Aligned_cols=112 Identities=13% Similarity=0.250 Sum_probs=84.6
Q ss_pred CcEEEEecCC--CCee---eeeecCCEEEEEEEEc-CCCcccEEEeEEEEEcCC---CCceEEEEeCCCCCCCCCCCCc-
Q psy10620 369 PPRIRILDTK--SREV---ETVRIGDKLTFRIEIP-EETPYGIFARSCVAMAKD---SKSTFQIIDDEGCPVDPNIFPS- 438 (589)
Q Consensus 369 ~~~m~i~~~~--g~~v---~~v~vGd~l~l~~~~~-~~~~~~i~V~~C~A~d~~---~~~~~~LID~~GCp~D~~i~~~- 438 (589)
.++|+++... ..+. ..+.+||+||+++++. .+..+.+++++|||++.. +..+|.||+ +|||.|+++.-.
T Consensus 6 ~~~M~ly~d~~f~~p~~~~~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d~~~~~~y~lI~-nGC~~D~t~~~~~ 84 (176)
T 3qw9_A 6 TFNMELYNTDLFLVPSPGVFSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIE-NICPKDDSVKFYS 84 (176)
T ss_dssp EEEEEEESSTTCCSBCCSSEEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSCTTSCCSCEEEE-TTEECSTTCEEEE
T ss_pred EEEEEeecCcccCcCccCCceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCCccCCccEEEEE-CCccCCCCEEEEe
Confidence 4678888532 2232 4689999999999997 467899999999999643 357899996 899999986421
Q ss_pred cc------ccC--ceeEEEEEEEEEc-ccceEEEEEEEEEecCCCCCCCCCCCC
Q psy10620 439 FT------PDG--NALQSVYEAFRFT-ESYGVIFQCNVKYCLGPCEPAVCEWGR 483 (589)
Q Consensus 439 ~~------~~~--~~l~~~f~AFKFp-~s~~V~f~C~V~vC~~~C~p~~C~~~~ 483 (589)
.. .++ ...++.| ||||. +.+.|||||.|.+|... ....|..++
T Consensus 85 ~~~v~~~~~ng~s~~~RFsf-~F~Fv~~~~~VYLHC~v~vC~~~-~~~~C~~~C 136 (176)
T 3qw9_A 85 SKRVHFPIPHAEVDKKRFSF-LFKSVFNTSLLFLHCELTLCSRK-KGSLKLPRC 136 (176)
T ss_dssp EEEEEETTTTEEEEEEEEEE-ECCCCSSCSEEEEEEEEEEEESS-SSSCCSCBC
T ss_pred ccccccccCCCCcceEEEEE-EEEecCCCCeEEEEEeeEEECCC-CCCcccCCC
Confidence 11 222 3578899 99998 47899999999999976 556676665
No 3
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A
Probab=98.33 E-value=6.7e-07 Score=75.49 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCeeEEEecCeEEec----ccceEEecCCHHHHHHHhhcCC--CceeeeEEeEeccCcEEecCCCccccCcccccccCcC
Q psy10620 14 RPWAFERVPNKMIRG----LDNALIYTSTKEACLAACLNEH--RFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQG 87 (589)
Q Consensus 14 ~~~~Fer~~~~~L~g----~~~~~~~~~s~~~C~~~Cl~~~--~f~CrS~~y~~~~~~C~Ls~~~~~~~p~~~~~~~~~~ 87 (589)
..-.|++..|..|.. .......+.+.++|..+|-.+. .|.|||+.|+.....|+|..+++.+.+- ....+..
T Consensus 13 ~L~~y~kTeg~~L~~~~~~~~~~~~~~~s~eeCA~kC~~~~~~~F~CRAF~y~~k~q~C~ll~~ns~s~~v--~~~~~~~ 90 (101)
T 3hms_A 13 TIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGV--KKEFGHE 90 (101)
T ss_dssp CGGGEEEEEEEEEEECCTTCCCEEEECSCHHHHHHHHHHCTTCSSCCCEEEEETTTTEEEEESCCTTSTTE--EEEEEEE
T ss_pred HHHHhhhcCCeEEeccCCCccceeeccCCHHHHHHHHHhccCCCcceeeeEEecCCCcEEECCCcCCCchh--eeeccCc
Confidence 344699999999997 4456778999999999999998 7999999999999999999999988643 2234567
Q ss_pred cceeec
Q psy10620 88 VDYFEN 93 (589)
Q Consensus 88 ~~Y~en 93 (589)
+|.|||
T Consensus 91 ~dLYEK 96 (101)
T 3hms_A 91 FDLYEN 96 (101)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 888987
No 4
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A
Probab=97.33 E-value=0.00018 Score=60.71 Aligned_cols=44 Identities=18% Similarity=0.532 Sum_probs=38.5
Q ss_pred eeeeCCHHHHHHHhhccC--CceeeeEEecCCCCCCccceEEeccCCCcC
Q psy10620 133 ELQVTNEAACRLACEIEN--EFLCRSFLYKGPPIGAQYNCQLFHLDHKTL 180 (589)
Q Consensus 133 ~~~~~s~~~C~~~C~~~~--~f~CrS~~y~~~~~~~~~~C~Ls~~d~~tl 180 (589)
...+.|.++|-++|..+. .|.||||.|+... ..|+|..+++.+-
T Consensus 36 ~~~~~s~eeCA~kC~~~~~~~F~CRAF~y~~k~----q~C~ll~~ns~s~ 81 (101)
T 3hms_A 36 TKKVNTADQCANRCTRNKGLPFTCKAFVFDKAR----KQCLWFPFNSMSS 81 (101)
T ss_dssp EEECSCHHHHHHHHHHCTTCSSCCCEEEEETTT----TEEEEESCCTTST
T ss_pred eeccCCHHHHHHHHHhccCCCcceeeeEEecCC----CcEEECCCcCCCc
Confidence 456789999999998887 8999999999875 6899999998875
No 5
>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*
Probab=97.32 E-value=0.00041 Score=68.76 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=64.5
Q ss_pred CeeEEEecCeEEecccc----eEEecCCHHHHHHHhhcCCC--ceeeeEEeEeccCcEEecCCCccccCcccccccCcCc
Q psy10620 15 PWAFERVPNKMIRGLDN----ALIYTSTKEACLAACLNEHR--FTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGV 88 (589)
Q Consensus 15 ~~~Fer~~~~~L~g~~~----~~~~~~s~~~C~~~Cl~~~~--f~CrS~~y~~~~~~C~Ls~~~~~~~p~~~~~~~~~~~ 88 (589)
+-.|.+..|..|....+ +...+.|+++|..+|-.++. |+|||+.|+..++.|++-.+++.+.+- ....+..+
T Consensus 14 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ca~~c~~~~~~~f~craf~~~~~~~~c~~~~~~~~s~~~--~~~~~~~~ 91 (264)
T 3sp8_A 14 IHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGV--KKEFGHEF 91 (264)
T ss_dssp GGGEEEETTEEEEESSTTCCCEEEECSCHHHHHHHHHSTTCSSSCCCEEEEETTTTEEEEESCCTTSTTE--EEEECTTE
T ss_pred hhhhhhccCeEEEeccccccceeeccCCHHHHHHHHhhccCCCccccceeeeccCCeEEEccccCCCCce--EeecCccE
Confidence 34699999999998777 67789999999999999987 999999999999999999999988653 22334457
Q ss_pred ceeec
Q psy10620 89 DYFEN 93 (589)
Q Consensus 89 ~Y~en 93 (589)
+.||+
T Consensus 92 ~l~ek 96 (264)
T 3sp8_A 92 DLYEN 96 (264)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 77876
No 6
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Probab=96.81 E-value=0.0045 Score=55.40 Aligned_cols=110 Identities=19% Similarity=0.385 Sum_probs=70.5
Q ss_pred EEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecCCCccccCcccccccCcCcceeeccccCCCCCCCCceeeeecc
Q psy10620 33 LIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPR 112 (589)
Q Consensus 33 ~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~~~~~~~p~~~~~~~~~~~~Y~en~C~~~~~~C~~~~~~~~~r 112 (589)
...+.|.++|+.+|...+ .|+-+.|+.++..|+|-+.. |. +....++.=--+.|. ..|-. .-+
T Consensus 25 ~~~v~Sa~~Cq~~C~~~~--~C~~FTf~~~~k~C~LK~~~----~~---~~~~~g~vSGpk~C~---~~C~~-~~v---- 87 (138)
T 2yil_A 25 VVHVASAQDCMKECQALP--TCSHFTYNKNSKKCHLKAGA----PE---FYTYTGDMTGPRSCE---HNCSD-ACW---- 87 (138)
T ss_dssp EEECSSHHHHHHHHHHST--TCCEEEEETTTCEEEEECSC----CC---EEECTTEEEEESCTT---CCCCS-SEE----
T ss_pred ccCCCCHHHHHHHccCCC--CCCEEEEECCCCEEEeccCc----hh---eeecCCceecCCcCc---ccHHh-cCC----
Confidence 478999999999999999 99999999999999998532 21 122223333344442 13421 111
Q ss_pred ccccccchhhccccceeeeeeeeeCCHHHHHHHhhccCCceeeeEEecCCCCCCccceEEeccCC
Q psy10620 113 IGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDH 177 (589)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~d~~~~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~~~~~~C~Ls~~d~ 177 (589)
.|.+. ........+.+..+|+++|... -.|+-|+|.. +.|.|-..|.
T Consensus 88 ---------dy~G~-d~~~~~~s~~~a~~CQ~~C~~~--~~C~~fTf~~------~tC~lk~~da 134 (138)
T 2yil_A 88 ---------MDGNN-PLAVWDYSGQPPALCWAACMGT--PGCDLYTFQG------MTCKLYSQTS 134 (138)
T ss_dssp ---------TTCCC-CSEEEECTTCCTHHHHHHHHTS--TTCCEEECGG------GEEEEECCCC
T ss_pred ---------CccCc-cccccccccCCHHHHHHHhCCC--CCCcEEEEeC------CeeEEECCcc
Confidence 12221 1111122236799999999633 3799999997 3799977554
No 7
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=96.81 E-value=0.0045 Score=69.44 Aligned_cols=149 Identities=13% Similarity=0.202 Sum_probs=90.6
Q ss_pred eccCCCCCCCCCeeEEEecCeEEecccceEEecCCHHHHHHHhhcCCCceeeeEEeEe-------ccCcEEecCCCcccc
Q psy10620 4 LQIRSENVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNY-------VTLQCHLSDSDRRTT 76 (589)
Q Consensus 4 ~cl~~~~~C~~~~~Fer~~~~~L~g~~~~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~-------~~~~C~Ls~~~~~~~ 76 (589)
.|...+..|.. ....|..+.|.+...+.+.+.++|+++|...+ .|+.+.|.. ..+.|.|-+....+.
T Consensus 102 ~c~~~~~~C~~----~~~~~~d~~G~d~~~~~~~s~~~C~~~C~~~~--~C~~fTy~~~~~~~~~~~~~C~LK~s~~~~~ 175 (625)
T 2f83_A 102 QCSHQISACNK----DIYVDLDMKGINYNSSVAKSAQECQERCTDDV--HCHFFTYATRQFPSLEHRNICLLKHTQTGTP 175 (625)
T ss_dssp TCCSCCCCCCC----CCEEEEEEECEEEEEEECSCHHHHHHHHHTSS--SCSEEEEECSSCSCSSSTTEEEEEECSSSSC
T ss_pred cCCCChhcCch----hhccccceecceeeeEeeCCHHHHHHhccCCC--CCcEEEecCCcccCCCCCceeEeccCcCCCC
Confidence 34444445642 23467888888878888999999999999998 999999954 457899966443332
Q ss_pred CcccccccCcCcceeeccccCCCCCCCCceeeeeccccccccchhhccccceeeeeeeeeCCHHHHHHHhhccCCceeee
Q psy10620 77 GQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRS 156 (589)
Q Consensus 77 p~~~~~~~~~~~~Y~en~C~~~~~~C~~~~~~~~~r~~~~~~~~~~~~~l~~~~d~~~~~~s~~~C~~~C~~~~~f~CrS 156 (589)
+.. ......-.-|--+.|......|...-.-. .| +.+..-..+.+.+.++|+++|.. +-.|+.
T Consensus 176 ~~~-~~~~g~vSG~s~k~c~~~~~~c~~~~~~~-------~d-------~~g~d~~~~~~~~~~~C~~~C~~--~~~C~~ 238 (625)
T 2f83_A 176 TRI-TKLDKVVSGFSLKSCALSNLACIRDIFPN-------TV-------FADSNIDSVMAPDAFVCGRICTH--HPGCLF 238 (625)
T ss_dssp SEE-EEEEEEEEEECCTTTTCCCSCCCCCCEEE-------EE-------CCSEEEEEEECSSHHHHHHHHHT--CSSCSE
T ss_pred cee-ccccccccCCCCCCCCCchhhchhhcccC-------cc-------ccCcceeeeecCCHHHHHHhccC--CCCCcE
Confidence 221 10011111233467765545664321111 11 11111123567899999999953 347999
Q ss_pred EEecCCCC---CCccceEEecc
Q psy10620 157 FLYKGPPI---GAQYNCQLFHL 175 (589)
Q Consensus 157 ~~y~~~~~---~~~~~C~Ls~~ 175 (589)
|+|..... +..+.|.|-+.
T Consensus 239 fT~~~~~~~~~~~~~~C~LK~s 260 (625)
T 2f83_A 239 FTFFSQEWPKESQRNLCLLKTS 260 (625)
T ss_dssp EEEECTTCSSGGGTTEEEEEEC
T ss_pred EEEecCCccCcccCCeEEeecC
Confidence 99986431 12378999764
No 8
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Probab=96.57 E-value=0.0048 Score=56.87 Aligned_cols=126 Identities=21% Similarity=0.328 Sum_probs=82.1
Q ss_pred eeEEEecCeEEecccc-eEEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecCCCccccCcccccccCcCcceeecc
Q psy10620 16 WAFERVPNKMIRGLDN-ALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENL 94 (589)
Q Consensus 16 ~~Fer~~~~~L~g~~~-~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~~~~~~~p~~~~~~~~~~~~Y~en~ 94 (589)
-+| ..+|..++|.+. ..+.+.+.++|..+|...+ .|+.+.|+...+.|+|-+.. |.. ....+++=--+.
T Consensus 10 ~c~-~~~n~~~~g~~i~~~~~~~s~~~Cq~~C~~~p--~C~~fTf~~~~~~C~LK~s~----~~~---~~~~g~iSG~k~ 79 (161)
T 4a5v_A 10 SCV-HSDNKGSRAPTIGEPVPDVSLEQCAAQCKAVD--GCTHFTYNDDSKMCHVKEGK----PDL---YDLTGGKTASRS 79 (161)
T ss_dssp SSC-CCSSEEECSCBCSCCBTTCCHHHHHHHHHHST--TCSEEEEETTTCCEEEECSS----CCE---EECTTEEEEESC
T ss_pred eEE-cCCCccccCCCeeeeecCCCHHHHHHHCcCCC--CCcEEEEECCCCEEEEeCCC----CCE---EEcCCceeCCCc
Confidence 345 567888888776 6788999999999999999 99999999999999998644 221 111111111233
Q ss_pred ccCCCCCCCCceeeeeccccccccchhhccccceeeeeeeeeCCHHHHHHHhhccCCceeeeEEecCCCCCCccceEEec
Q psy10620 95 CLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFH 174 (589)
Q Consensus 95 C~~~~~~C~~~~~~~~~r~~~~~~~~~~~~~l~~~~d~~~~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~~~~~~C~Ls~ 174 (589)
|.. .|-. .. +| |.+. .-+...+.+.+.++|+++|... -.|+.|+|+... ..|.|-+
T Consensus 80 C~~---~C~~--------~~--vD----~~G~-~dl~~~~~~~s~~~Cq~~C~~~--~~C~~fTy~~~~----~~C~LK~ 135 (161)
T 4a5v_A 80 CDR---SCFE--------QH--VS----YEGA-PDVMTAMVTSQSADCQAACAAD--PSCEIFTYNEHD----QKCTFKG 135 (161)
T ss_dssp CCC---TTCE--------ES--EE----ECSS-CBSSCCCBCSCHHHHHHHHHHC--TTCCEEEEETTT----TEEEEEC
T ss_pred CCc---chhh--------CC--Cc----ccCc-hhccccccCCCHHHHHHHcccC--CCCCEEEeeCCC----CeeEeCC
Confidence 331 2311 00 11 1111 0011224678999999999654 489999999654 7999954
Q ss_pred c
Q psy10620 175 L 175 (589)
Q Consensus 175 ~ 175 (589)
.
T Consensus 136 ~ 136 (161)
T 4a5v_A 136 R 136 (161)
T ss_dssp T
T ss_pred C
Confidence 3
No 9
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=96.54 E-value=0.013 Score=65.61 Aligned_cols=136 Identities=18% Similarity=0.329 Sum_probs=87.1
Q ss_pred ecCeEEecccceEEecCCHHHHHHHhhcCCCceeeeEEeEeccC--------cEEecCCCccccCcccccccCcCcceee
Q psy10620 21 VPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTL--------QCHLSDSDRRTTGQYVQFVDAQGVDYFE 92 (589)
Q Consensus 21 ~~~~~L~g~~~~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~--------~C~Ls~~~~~~~p~~~~~~~~~~~~Y~e 92 (589)
.+|..+.|.+...+.+.+.++|..+|...+ .|+.+.|+.... .|.|-+....+.|.. . ....-.=|-.
T Consensus 25 ~~~~d~~G~d~~~v~~~~~~~C~~~C~~~~--~C~~ft~~~~~~~~~~~~~~~C~LK~~~~~~~~~~-~-~~~~~sg~~~ 100 (625)
T 2f83_A 25 LKDTCFEGGDITTVFTPSAKYCQVVCTYHP--RCLLFTFTAESPSEDPTRWFTCVLKDSVTETLPRV-N-RTAAISGYSF 100 (625)
T ss_dssp EEEEEECSCEEEEEECSSHHHHHHHHHHSS--SCCEEEEECCCTTSCSTTTTEEEEECCGGGCCCEE-E-EEEEEEEECS
T ss_pred cccccccCCceeEEecCCHHHHHHhccCCC--CeeEEEEeCCCCCccccccceEEecccccCCCCcc-c-cCCccccccc
Confidence 456678888888888899999999999999 999999998766 499987654333321 1 1111223334
Q ss_pred ccccCCCCCCCCceeeeeccccccccchhhccccceeeeeeeeeCCHHHHHHHhhccCCceeeeEEecCCCC---CCccc
Q psy10620 93 NLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPI---GAQYN 169 (589)
Q Consensus 93 n~C~~~~~~C~~~~~~~~~r~~~~~~~~~~~~~l~~~~d~~~~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~---~~~~~ 169 (589)
+.|...+..|...-.-.. | +.+.--..+.+.+.++|+++|. .+-.|+.|+|..... ...+.
T Consensus 101 ~~c~~~~~~C~~~~~~~~-------d-------~~G~d~~~~~~~s~~~C~~~C~--~~~~C~~fTy~~~~~~~~~~~~~ 164 (625)
T 2f83_A 101 KQCSHQISACNKDIYVDL-------D-------MKGINYNSSVAKSAQECQERCT--DDVHCHFFTYATRQFPSLEHRNI 164 (625)
T ss_dssp TTCCSCCCCCCCCCEEEE-------E-------EECEEEEEEECSCHHHHHHHHH--TSSSCSEEEEECSSCSCSSSTTE
T ss_pred ccCCCChhcCchhhcccc-------c-------eecceeeeEeeCCHHHHHHhcc--CCCCCcEEEecCCcccCCCCCce
Confidence 678776667853211111 1 1010001245789999999994 335899999965320 12368
Q ss_pred eEEeccC
Q psy10620 170 CQLFHLD 176 (589)
Q Consensus 170 C~Ls~~d 176 (589)
|.|-+..
T Consensus 165 C~LK~s~ 171 (625)
T 2f83_A 165 CLLKHTQ 171 (625)
T ss_dssp EEEEECS
T ss_pred eEeccCc
Confidence 9996644
No 10
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Probab=96.18 E-value=0.0044 Score=71.22 Aligned_cols=73 Identities=21% Similarity=0.449 Sum_probs=61.5
Q ss_pred eEEEecCeEEecccceEEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecCCCccccCcccccccCcCcceeec
Q psy10620 17 AFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFEN 93 (589)
Q Consensus 17 ~Fer~~~~~L~g~~~~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~~~~~~~p~~~~~~~~~~~~Y~en 93 (589)
.|.+..|..|....++...+.++++|..+|-.++.|.||++.|+...+.|+|-.+++.+..- .....++-||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ca~~c~~~~~~~cr~f~~~~~~~~c~~~~~~~~~~~~----~~~~~~~l~~~ 77 (791)
T 4dur_A 5 DYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSSII----IRMRDVVLFEK 77 (791)
T ss_dssp TEEEEEEEEECCSSEEEEECSSHHHHHHHHHHCSSSCCCEEEEETTTTEEEEESCCTTTSCE----EEEEEEEEEEE
T ss_pred hhhhcCCeEEeccChhhcccCCHHHHHHHhhccCCcceeeeeeeccCCceEECCCcCCCchh----hccccccchhc
Confidence 48899999999888888899999999999999999999999999999999999998887542 11223566665
No 11
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.84 E-value=0.012 Score=41.46 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccc
Q psy10620 552 KTSILALGVTCCLLILIYVSTIFCYYIKKWMTPRK 586 (589)
Q Consensus 552 ~~~~~~l~i~~~ll~~~~i~~~~~~~~~~~~~~~~ 586 (589)
+...++.++.|+++++++..+++.|+|||+.+.+|
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHhheehhhhhccC
Confidence 34567778888555544555677777777766543
No 12
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Probab=94.79 E-value=0.062 Score=50.18 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=50.0
Q ss_pred CeeEEEecCeEEec----ccceEEecCCHHHHHHHhhcCC--CceeeeEEeEeccCcEEecCCCcc
Q psy10620 15 PWAFERVPNKMIRG----LDNALIYTSTKEACLAACLNEH--RFTCRSVEYNYVTLQCHLSDSDRR 74 (589)
Q Consensus 15 ~~~Fer~~~~~L~g----~~~~~~~~~s~~~C~~~Cl~~~--~f~CrS~~y~~~~~~C~Ls~~~~~ 74 (589)
+-.|.+..|..|.. ..++...+.++++|..+|..++ .|.||++.|+...+.|.+--++..
T Consensus 14 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~Ca~~C~~~~~~~~~C~af~y~~~~~~C~~~p~~~~ 79 (184)
T 2qj2_A 14 IHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSM 79 (184)
T ss_dssp GGGEEEETTEEEEECSTTCCCEEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTTTEEEEESSCTT
T ss_pred HHHHhhhcCcEEeccCccccccccccCCHHHHHHHHHhccCCcceeecceEeccCCeEEEcCCcCC
Confidence 34599999999997 4555667899999999999997 799999999988999998544443
No 13
>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*
Probab=94.45 E-value=0.036 Score=54.82 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=38.9
Q ss_pred eeeeeCCHHHHHHHhhccCC--ceeeeEEecCCCCCCccceEEeccCCCcC
Q psy10620 132 KELQVTNEAACRLACEIENE--FLCRSFLYKGPPIGAQYNCQLFHLDHKTL 180 (589)
Q Consensus 132 ~~~~~~s~~~C~~~C~~~~~--f~CrS~~y~~~~~~~~~~C~Ls~~d~~tl 180 (589)
+...+.|.++|-.+|..+.. |.||+|.|+... ..|++...++.+-
T Consensus 35 ~~~~~~~~~~ca~~c~~~~~~~f~craf~~~~~~----~~c~~~~~~~~s~ 81 (264)
T 3sp8_A 35 KTKKVNTADQCANRCTRNKGLPFTCKAFVFDKAR----KQCLWFPFNSMSS 81 (264)
T ss_dssp EEEECSCHHHHHHHHHSTTCSSSCCCEEEEETTT----TEEEEESCCTTST
T ss_pred eeeccCCHHHHHHHHhhccCCCccccceeeeccC----CeEEEccccCCCC
Confidence 34567899999999988776 999999999876 6899999998875
No 14
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=94.01 E-value=0.08 Score=37.37 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHhhhhhcCcc
Q psy10620 553 TSILALGVTCCLLILIYVST-IFCYYIKKWMTPR 585 (589)
Q Consensus 553 ~~~~~l~i~~~ll~~~~i~~-~~~~~~~~~~~~~ 585 (589)
...++..|.+-++++++|+. ++.|+|||+.+.+
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 35677777775555555554 4555555555443
No 15
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.87 E-value=0.032 Score=39.47 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccc
Q psy10620 554 SILALGVTCCLLILIYVSTIFCYYIKKWMTPRK 586 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~~i~~~~~~~~~~~~~~~~ 586 (589)
..|+..|.+-++++++|++...+++||+.+++|
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 456667777555555555544444444444333
No 16
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*
Probab=93.03 E-value=0.083 Score=42.65 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=34.2
Q ss_pred eEEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecC
Q psy10620 32 ALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSD 70 (589)
Q Consensus 32 ~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~ 70 (589)
..+.+.++++|..+|+.++ .|+.+.|+...+-|.|-+
T Consensus 25 ~~~~~~sl~~Cq~aC~a~~--~C~aFTyN~~s~~CflKs 61 (82)
T 2ll3_A 25 EVKRASSLSECRARCQAEK--ECSHYTYNVKSGLCYPKR 61 (82)
T ss_dssp SCEECSSHHHHHHHHHHCT--TEEEEEEETTTTEEEEEE
T ss_pred ccccCCCHHHHHHHhhccC--CCCeEEeccCCCceEccc
Confidence 5678999999999999999 999999999999999964
No 17
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*
Probab=91.15 E-value=0.17 Score=40.84 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=30.2
Q ss_pred eeeeeCCHHHHHHHhhccCCceeeeEEecCCCCCCccceEEec
Q psy10620 132 KELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFH 174 (589)
Q Consensus 132 ~~~~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~~~~~~C~Ls~ 174 (589)
..+.+.++++|+..|+.+ -.|+.|.|+..+ +.|.|=.
T Consensus 25 ~~~~~~sl~~Cq~aC~a~--~~C~aFTyN~~s----~~CflKs 61 (82)
T 2ll3_A 25 EVKRASSLSECRARCQAE--KECSHYTYNVKS----GLCYPKR 61 (82)
T ss_dssp SCEECSSHHHHHHHHHHC--TTEEEEEEETTT----TEEEEEE
T ss_pred ccccCCCHHHHHHHhhcc--CCCCeEEeccCC----CceEccc
Confidence 345789999999999643 379999999876 7899954
No 18
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Probab=90.29 E-value=0.22 Score=57.21 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=39.5
Q ss_pred eeeeeeCCHHHHHHHhhccCCceeeeEEecCCCCCCccceEEeccCCCcC
Q psy10620 131 DKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTL 180 (589)
Q Consensus 131 d~~~~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~~~~~~C~Ls~~d~~tl 180 (589)
.+...+.+.++|-++|..+..|.||+|.|+... ..|+|...++.+-
T Consensus 19 ~~~~~~~~~~~ca~~c~~~~~~~cr~f~~~~~~----~~c~~~~~~~~~~ 64 (791)
T 4dur_A 19 KKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKE----QQCVIMAENRKSS 64 (791)
T ss_dssp EEEEECSSHHHHHHHHHHCSSSCCCEEEEETTT----TEEEEESCCTTTS
T ss_pred hhhcccCCHHHHHHHhhccCCcceeeeeeeccC----CceEECCCcCCCc
Confidence 355678899999999988888999999999876 6899999887664
No 19
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Probab=87.77 E-value=0.6 Score=43.49 Aligned_cols=41 Identities=22% Similarity=0.614 Sum_probs=32.6
Q ss_pred eeeeeCCHHHHHHHhhccC--CceeeeEEecCCCCCCccceEEeccC
Q psy10620 132 KELQVTNEAACRLACEIEN--EFLCRSFLYKGPPIGAQYNCQLFHLD 176 (589)
Q Consensus 132 ~~~~~~s~~~C~~~C~~~~--~f~CrS~~y~~~~~~~~~~C~Ls~~d 176 (589)
+...+.++++|..+|..+. .|.||+|.|.... ..|.+.-.+
T Consensus 35 ~~~~~~~~e~Ca~~C~~~~~~~~~C~af~y~~~~----~~C~~~p~~ 77 (184)
T 2qj2_A 35 KTKKVNTADQCANRCTRNKGLPFTCKAFVFDKAR----KQCLWFPFN 77 (184)
T ss_dssp EEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTT----TEEEEESSC
T ss_pred cccccCCHHHHHHHHHhccCCcceeecceEeccC----CeEEEcCCc
Confidence 3456789999999997765 7999999999764 689985433
No 20
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=87.68 E-value=0.2 Score=33.44 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Q psy10620 553 TSILALGVTCCLLILIYVS-TIFCYYIKKW 581 (589)
Q Consensus 553 ~~~~~l~i~~~ll~~~~i~-~~~~~~~~~~ 581 (589)
...++..+.| +|++++|. .++.|+|||+
T Consensus 7 ~~sIaagVvg-lll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 7 VTFIIATVVG-VLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHHHH-HHHHHHHTTTTTHHHHHCC
T ss_pred CcEeHHHHHH-HHHHHHHHHHhheEEeecC
Confidence 3467778888 44444444 4667676663
No 21
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Probab=87.16 E-value=0.4 Score=43.91 Aligned_cols=59 Identities=27% Similarity=0.500 Sum_probs=48.3
Q ss_pred CCCCCCCeeEEEecCeEEecc-cc-eEEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecCCC
Q psy10620 9 ENVCLRPWAFERVPNKMIRGL-DN-ALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSD 72 (589)
Q Consensus 9 ~~~C~~~~~Fer~~~~~L~g~-~~-~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~~~ 72 (589)
++.|.. |+++ +|..+.|. +. ..+.+.+.++|.++|.... .|+.+.|+...+.|.|-...
T Consensus 77 ~k~C~~-~C~~--~~vD~~G~~dl~~~~~~~s~~~Cq~~C~~~~--~C~~fTy~~~~~~C~LK~~~ 137 (161)
T 4a5v_A 77 SRSCDR-SCFE--QHVSYEGAPDVMTAMVTSQSADCQAACAADP--SCEIFTYNEHDQKCTFKGRG 137 (161)
T ss_dssp ESCCCC-TTCE--ESEEECSSCBSSCCCBCSCHHHHHHHHHHCT--TCCEEEEETTTTEEEEECTT
T ss_pred CCcCCc-chhh--CCCcccCchhccccccCCCHHHHHHHcccCC--CCCEEEeeCCCCeeEeCCCC
Confidence 456764 5555 79999998 44 4478899999999999998 99999999999999995444
No 22
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Probab=82.60 E-value=0.84 Score=40.58 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=30.2
Q ss_pred eeeeCCHHHHHHHhhccCCceeeeEEecCCCCCCccceEEecc
Q psy10620 133 ELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHL 175 (589)
Q Consensus 133 ~~~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~~~~~~C~Ls~~ 175 (589)
...+.|.++|+++|. +.+ .|+-|+|+..+ ++|+|-..
T Consensus 25 ~~~v~Sa~~Cq~~C~-~~~-~C~~FTf~~~~----k~C~LK~~ 61 (138)
T 2yil_A 25 VVHVASAQDCMKECQ-ALP-TCSHFTYNKNS----KKCHLKAG 61 (138)
T ss_dssp EEECSSHHHHHHHHH-HST-TCCEEEEETTT----CEEEEECS
T ss_pred ccCCCCHHHHHHHcc-CCC-CCCEEEEECCC----CEEEeccC
Confidence 467899999999995 333 79999998875 79999753
No 23
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=78.67 E-value=2.2 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10620 554 SILALGVTCCLLILIYVSTIFCYYIKK 580 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~~i~~~~~~~~~~ 580 (589)
.+++-+++|.++.+++++++.+|+.||
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CceeeeehHHHHHHHHHHHHHHHHeec
Confidence 467777888877767666655555544
No 24
>1hky_A MIC-5, etmic5, microneme protein 5 precursor; adhesin, PAN module; NMR {Eimeria tenella} SCOP: g.10.1.3
Probab=66.81 E-value=7.4 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=36.3
Q ss_pred cceEEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecCCCccccCc
Q psy10620 30 DNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQ 78 (589)
Q Consensus 30 ~~~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~~~~~~~p~ 78 (589)
+...-.+.|-+.|+++|-+.. .||=+.. .++.|.|...+..-+|.
T Consensus 25 aiseakaassqacqelcekda--kcrfftl--asgkcslfaddaalrpt 69 (86)
T 1hky_A 25 AISEAKAASSQACQELCEKDA--KCRFFTL--ASGKCSLFADDAALRPT 69 (86)
T ss_dssp CSEEECCSSHHHHHHHHHHCT--TCSBCEE--CSSCEEEBSSCSSCBCC
T ss_pred hhhhhHHHhHHHHHHHHhccc--ceeEEEe--ecCceeeeccchhcCcc
Confidence 334456889999999999988 7886555 89999999988777764
No 25
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=47.94 E-value=14 Score=25.08 Aligned_cols=7 Identities=14% Similarity=0.321 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy10620 560 VTCCLLI 566 (589)
Q Consensus 560 i~~~ll~ 566 (589)
+.|++++
T Consensus 20 v~Gv~ll 26 (41)
T 2k9y_A 20 AVGVVLL 26 (41)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3444443
No 26
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.65 E-value=32 Score=25.20 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10620 554 SILALGVTCCLLILIYVSTIF 574 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~~i~~~~ 574 (589)
-++.+++++-|++++++++++
T Consensus 13 wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556666555555555433
No 27
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=45.59 E-value=35 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.057 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Q psy10620 555 ILALGVTCCLLILIYVSTIFCYYIKKWMTP 584 (589)
Q Consensus 555 ~~~l~i~~~ll~~~~i~~~~~~~~~~~~~~ 584 (589)
..+|+++++||++.++++..=-.+-++.|+
T Consensus 18 iGGLifA~vLfi~GI~iilS~KckCk~~qk 47 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRRCRCKFNQQ 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHcCccccCCCCC
Confidence 677888888888777776553333333333
No 28
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=43.93 E-value=29 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy10620 555 ILALGVTCCLLILIYVSTIFCYYI 578 (589)
Q Consensus 555 ~~~l~i~~~ll~~~~i~~~~~~~~ 578 (589)
.++=+|.+-++.++++++.+.|++
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEeEeHHHHHHHHHHHHHHhhee
Confidence 445455555555555555444433
No 29
>1hky_A MIC-5, etmic5, microneme protein 5 precursor; adhesin, PAN module; NMR {Eimeria tenella} SCOP: g.10.1.3
Probab=43.74 E-value=17 Score=27.43 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=29.5
Q ss_pred eeCCHHHHHHHhhccCCceeeeEEecCCCCCCccceEEeccCCCcCC
Q psy10620 135 QVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLP 181 (589)
Q Consensus 135 ~~~s~~~C~~~C~~~~~f~CrS~~y~~~~~~~~~~C~Ls~~d~~tl~ 181 (589)
.+.|-+.|+++|+ .+-.||=|..-. +.|.|...|..-.|
T Consensus 30 kaassqacqelce--kdakcrfftlas------gkcslfaddaalrp 68 (86)
T 1hky_A 30 KAASSQACQELCE--KDAKCRFFTLAS------GKCSLFADDAALRP 68 (86)
T ss_dssp CCSSHHHHHHHHH--HCTTCSBCEECS------SCEEEBSSCSSCBC
T ss_pred HHHhHHHHHHHHh--cccceeEEEeec------CceeeeccchhcCc
Confidence 4678999999995 355899887754 68999887755443
No 30
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=43.34 E-value=7.1 Score=33.04 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccc
Q psy10620 554 SILALGVTCCLLILIYVSTIFCYYIKKWMTPRK 586 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~~i~~~~~~~~~~~~~~~~ 586 (589)
.+++|++.+++++.+++++++. +++|++++..
T Consensus 31 a~igL~v~~vai~~viVv~l~v-~rrr~~~~~s 62 (122)
T 2lp1_A 31 AIIGLMVGGVVIATVIVITLVM-LKKKQYTSIH 62 (122)
Confidence 5788888887777665555443 4455555543
No 31
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=36.36 E-value=44 Score=25.43 Aligned_cols=20 Identities=15% Similarity=-0.120 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10620 555 ILALGVTCCLLILIYVSTIF 574 (589)
Q Consensus 555 ~~~l~i~~~ll~~~~i~~~~ 574 (589)
..+|+++++||++-++++..
T Consensus 19 igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred ecchhhHHHHHHHHHHHHHc
Confidence 67788888888776666644
No 32
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=35.17 E-value=54 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10620 554 SILALGVTCCLLILIYVSTIF 574 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~~i~~~~ 574 (589)
-++.+++++-|+++++|++++
T Consensus 10 WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555665555555555433
No 33
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=33.40 E-value=49 Score=20.17 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH-HHHHH
Q psy10620 560 VTCCLLILIYVS-TIFCY 576 (589)
Q Consensus 560 i~~~ll~~~~i~-~~~~~ 576 (589)
++.++|++++++ |++.|
T Consensus 5 VA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 5 IATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444 44444
No 34
>2k13_X Saratin; collagen binding, mixed alpha/beta structure, fold typical for PAN domains, toxin; NMR {Haementeria officinalis}
Probab=31.91 E-value=1.6e+02 Score=22.83 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=46.8
Q ss_pred CeeEEEecCeEEecccceEEecCCHHHHHHHhhcCCCceeeeEEeEeccCcEEecCCCccccCc
Q psy10620 15 PWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQ 78 (589)
Q Consensus 15 ~~~Fer~~~~~L~g~~~~~~~~~s~~~C~~~Cl~~~~f~CrS~~y~~~~~~C~Ls~~~~~~~p~ 78 (589)
-|.| ..+.....+++..-....+.+|-..|++.. .|--+--.....+|+.+-.+-..+.+
T Consensus 6 cwtf--yanrkytdfdksfkkssdldeckktcfkte--ycyivfedtvnkecyynvvdgeeldq 65 (103)
T 2k13_X 6 CWTF--YANRKYTDFDKSFKKSSDLDECKKTCFKTE--YCYIVFEDTVNKECYYNVVDGEELDQ 65 (103)
T ss_dssp CEEE--EESCBCSCCTTCEEECCCHHHHHHHHHHSS--CCCEEEEETTTTEEEEECSCCTTCCT
T ss_pred hhhh--hcccccchhhhhhcccccHHHHHhhhcccc--eEEEEEeccccceeeEeccchhhccc
Confidence 4666 567777778888778899999999999988 78766556677999999877655543
No 35
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=32.36 E-value=14 Score=25.63 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy10620 553 TSILALGVTCCLLILIYVSTI 573 (589)
Q Consensus 553 ~~~~~l~i~~~ll~~~~i~~~ 573 (589)
..+++|++.++.++.++++++
T Consensus 17 ga~iGL~v~gVai~~vIVvsl 37 (43)
T 2llm_A 17 GAIIGLMVGGVVIATVIVITL 37 (43)
Confidence 357788887776665555443
No 36
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=26.00 E-value=1e+02 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10620 554 SILALGVTCCLLILIYVSTIFCYYIK 579 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~~i~~~~~~~~~ 579 (589)
..++-.|.|+|.++++.-.++.++|+
T Consensus 20 ~si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 20 KAIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566677777776666666665553
No 37
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=24.68 E-value=98 Score=28.18 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=25.3
Q ss_pred EEEEecCCCCeeeeeecCCEEEEEEEEcC
Q psy10620 371 RIRILDTKSREVETVRIGDKLTFRIEIPE 399 (589)
Q Consensus 371 ~m~i~~~~g~~v~~v~vGd~l~l~~~~~~ 399 (589)
.++++|.+|.++..+..|+++++++++.-
T Consensus 52 ~v~l~d~~G~~~~~~~~Ge~v~l~i~~~~ 80 (188)
T 2r5o_A 52 DYHIQSAGVDFPPSLTGNQQTDFLMKVVF 80 (188)
T ss_dssp EEEEEETTEESCSSEETTCEEEEEEEEEE
T ss_pred EEEEEECCCCEeeEEeCCCEEEEEEEEEE
Confidence 56788888988889999999999999863
No 38
>1i8n_A Anti-platelet protein; PAN module, toxin; 2.20A {Haementeria officinalis} SCOP: g.10.1.2
Probab=24.17 E-value=1.4e+02 Score=23.90 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=44.1
Q ss_pred eEEEecCeEEecccceEEecCCHHHHHHHhhcCC-CceeeeEEeEeccCcEEecCCCcccc
Q psy10620 17 AFERVPNKMIRGLDNALIYTSTKEACLAACLNEH-RFTCRSVEYNYVTLQCHLSDSDRRTT 76 (589)
Q Consensus 17 ~Fer~~~~~L~g~~~~~~~~~s~~~C~~~Cl~~~-~f~CrS~~y~~~~~~C~Ls~~~~~~~ 76 (589)
++.+.||..|-..-.....-.|+.+|...|-... +-.|--...+.++.+|+-+.+.-.+-
T Consensus 46 cwskrpgwklpdnlltkteftsvdecrkmceesavepscyilqintetnecyrnnegdvtw 106 (126)
T 1i8n_A 46 CWSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAVEPSCYILQINTETNECYRNNEGDVTW 106 (126)
T ss_dssp EEEEEETCBCCGGGEEECSCCSHHHHHHHHHHCCSSSCCCEEEEETTTCCEEEECSSSCCG
T ss_pred hhccCCCCcCCcccccccccccHHHHHHHHHhcccCCceEEEEecccchhhhccCCCceee
Confidence 5568888888754333334578999999998853 33788888888999999887765554
No 39
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=24.14 E-value=1.2e+02 Score=20.57 Aligned_cols=15 Identities=0% Similarity=0.011 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy10620 554 SILALGVTCCLLILI 568 (589)
Q Consensus 554 ~~~~l~i~~~ll~~~ 568 (589)
+++.-+++|.+++.+
T Consensus 8 nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 8 GFFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556666665555
Done!