RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10620
(589 letters)
>gnl|CDD|215716 pfam00100, Zona_pellucida, Zona pellucida-like domain.
Length = 252
Score = 111 bits (278), Expect = 1e-27
Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 27/246 (10%)
Query: 254 HCKDTRIAVQVRTNKPFNGRIYALG---RSETCNIDVLNSDLFRLDLTMSGQDCNTQSVT 310
C + + V V + F +Y +C NS +S C T
Sbjct: 1 QCTEDTMTVVVSKDLTFTPGLYLSSLHLGDPSCRPVETNSTHAIFRFPLS--SCGTTRQR 58
Query: 311 ----GVFSNTVVLQ----HHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISIT 362
V+ N +V Q + +D+ V C+Y S +++ + P +
Sbjct: 59 TGDGIVYENEIVSQPSVSVGPPITRDSDRRLPVSCSYTSRSVSVSSVAVLPTVPPVSPSP 118
Query: 363 SAPEAPPPRIRILDTK---SREVETVRIGDKLTFRIEIPEET---PYGIFARSCVAMA-- 414
S + +R+ S T+ +GD L + P +F SC A
Sbjct: 119 SGEGSLTFSLRLYTDDSYTSDYPVTIELGDPLYVEATVSVLPRSDPLVLFLDSCWATPGP 178
Query: 415 -KDSKSTFQIIDDEGCPVDPN---IFPSFTPDGNALQSVYEAFRFTESYG-VIFQCNVKY 469
DS + +I++ GCPVD + + + + ++AFRF V C+VK
Sbjct: 179 DPDSSPRYDLIEN-GCPVDGDSTSTLSHPVGESHTARFSFKAFRFPGDSSQVYIHCSVKV 237
Query: 470 CLGPCE 475
C
Sbjct: 238 CDKSDP 243
>gnl|CDD|238532 cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like domains; present
in N-terminal (N) domains of plasminogen/hepatocyte
growth factor proteins, and various proteins found in
Bilateria, such as leech anti-platelet proteins.
PAN/APPLE domains fulfill diverse biological functions
by mediating protein-protein or protein-carbohydrate
interactions.
Length = 80
Score = 81.4 bits (201), Expect = 6e-19
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 13 LRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSD 72
L + F V NK++ I ++ E CL CL E FTCRS YNY + +C LSD D
Sbjct: 1 LNDFKFVLVLNKILVSEVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDED 60
Query: 73 RRTTGQYVQFVDAQGVDYFEN 93
R ++G + + VDY+EN
Sbjct: 61 RMSSGVKLLY--DSNVDYYEN 79
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 126 LHYYVDKELQVTNEAACRLACEIENEFLCRSFLY 159
L V E+ V + C C E EF CRSF Y
Sbjct: 14 LVSEVKTEITVASLEECLRKCLEETEFTCRSFNY 47
>gnl|CDD|214579 smart00241, ZP, Zona pellucida (ZP) domain. ZP proteins are
responsible for sperm-adhesion fo the zona pellucida. ZP
domains are also present in multidomain transmembrane
proteins such as glycoprotein GP2, uromodulin and
TGF-beta receptor type III (betaglycan).
Length = 252
Score = 86.3 bits (214), Expect = 7e-19
Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 25/239 (10%)
Query: 254 HCKDTRIAVQVRTNKPFNGRIYALGRS---ETCNIDVLNSDLFRLDLTMSGQDCNTQ-SV 309
C + ++ V V T+ F G I G + +C ++ + + C T+ V
Sbjct: 1 QCGEDQMVVSVSTDLLFPGGINVKGLTLGDPSCRPQFTDATSAFVSFEVPLNGCGTRRQV 60
Query: 310 TG---VFSNTVVLQ-HHSVVMTKADKI-YKVKCTYDMSSKNITFGMMPIRDPEMISITSA 364
V+SNT+V+ H +T+ D+ Y +C Y + K + + ++S
Sbjct: 61 NPDGIVYSNTLVVSPFHPGFITRDDRAAYHFQCFYPENEK--VSLNLDVSTIPPTELSSV 118
Query: 365 PEAPPP-RIRILDTKS----REVETVRIGDKLTFRIEIPEET--PYGIFARSCVAM---A 414
E P R+ S + +GD + E P G+ +C A
Sbjct: 119 SEGPLTCSYRLYKDDSFGSPYQSADYVLGDPVYHEWECDGADDPPLGLLVDNCYATPGPD 178
Query: 415 KDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQS---VYEAFRFTESYGVIFQCNVKYC 470
S + IID+ GCPVD + + + N L + F+F + V F C ++ C
Sbjct: 179 PSSGPKYFIIDN-GCPVDGYLDSTIPYNSNPLHRARFSVKVFKFADRSLVYFHCQIRLC 236
>gnl|CDD|215662 pfam00024, PAN_1, PAN domain. The PAN domain contains a
conserved core of three disulphide bridges. In some
members of the family there is an additional fourth
disulphide bridge the links the N and C termini of the
domain. The domain is found in diverse proteins, in
some they mediate protein-protein interactions, in
others they mediate protein-carbohydrate interactions.
Length = 78
Score = 70.3 bits (172), Expect = 4e-15
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 17 AFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTT 76
+FERVP + G D +++ + E C A C NE R CRS YN + +C L S +
Sbjct: 2 SFERVPGTSLSGTDVSVVDVPSAEECAALCTNEPR-VCRSFTYNPKSKECLLKSSSSGSL 60
Query: 77 GQYVQFVDAQGVDYFENLC 95
+ QGVDY+E C
Sbjct: 61 PPRL-KRSDQGVDYYEKSC 78
Score = 36.0 bits (83), Expect = 0.004
Identities = 20/86 (23%), Positives = 25/86 (29%), Gaps = 16/86 (18%)
Query: 124 ASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQLFHLDHKTLPDG 183
SL + V + C C +CRSF Y C L +LP
Sbjct: 9 TSLSGTDVSVVDVPSAEECAALCT-NEPRVCRSFTY----NPKSKECLLKSSSSGSLP-- 61
Query: 184 PSTYLNAERPLIDDGQRIGSYYENYC 209
L +D YYE C
Sbjct: 62 --PRLKRSDQGVD-------YYEKSC 78
>gnl|CDD|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains.
Apple-like domains present in Plasminogen, C. elegans
hypothetical ORFs and the extracellular portion of
plant receptor-like protein kinases. Predicted to
possess protein- and/or carbohydrate-binding functions.
Length = 78
Score = 56.8 bits (137), Expect = 2e-10
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 17 AFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTT 76
F R+PN + G +I ++ E C + CLN +CRS YN T C L
Sbjct: 5 CFVRLPNTKLPGFSRIVISVASLEECASKCLNS-NCSCRSFTYNNGTKGCLLWSESSL-- 61
Query: 77 GQYVQFVDAQGVDYFENL 94
+ + GVD +E +
Sbjct: 62 -GDARLFPSGGVDLYEKI 78
>gnl|CDD|199902 cd10147, Wzt_C-like, C-Terminal domain of O-antigenic
polysaccharide transporter protein Wzt and related
proteins. The Escherichia coli ABC protein Wzt consists
of 2 domains, a conventional ABC domain that binds ATP
and utilizes its energy to transport molecules across
membranes, and a C terminal domain which is responsible
for its target molecule specificity. Wzt is part of the
ATP-binding-cassette (ABC) transporter complex,
responsible for the transport of the O-antigenic
polysaccharide (O-PS) portion of lipopolysaccharide
(LPS), a major component of the outer membrane of
Gram-negative bacteria. This CD includes Wzt proteins
from two Escherichia coli serotypes O8 and O9a, WztO8
and WztO9a; these proteins are specific for their
cognate polysaccharides (O8 or O9a O-PS).
Length = 144
Score = 31.9 bits (73), Expect = 0.40
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 371 RIRILDTKSREVETVRIGDKLTFRIEI 397
+ +LD V T R G+ +T RIE
Sbjct: 14 DVELLDEDGEPVNTFRSGEPVTLRIEY 40
>gnl|CDD|222657 pfam14295, PAN_4, PAN domain.
Length = 48
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 133 ELQVTNEAACRLACEIENEFLCRSFLYKGPPIGAQYNCQL 172
+ V + AC AC ++ CR++ Y P G C L
Sbjct: 12 PVSVDSPEACCAACAADSG--CRAWTYVDPASGGT--CWL 47
>gnl|CDD|237278 PRK13029, PRK13029, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1186
Score = 30.5 bits (69), Expect = 2.8
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 440 TPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRESVESWGKRRRRSV 497
+P G Q++++A + + V+FQ V L A WG + +E +R V
Sbjct: 65 SPLGALDQALWKAKKHLAAADVVFQPGVNEELA----ATAVWGSQQLELDPGAKRDGV 118
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 29.2 bits (66), Expect = 7.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 480 EWGRESVESWGKRRRRSVANDTESSDDMTLSQEIL 514
E R E RRR ++ DT ++ D LSQE L
Sbjct: 114 ERRRLEEEDVEGRRRHLLSGDTTNALD-ALSQEGL 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.420
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,932,745
Number of extensions: 2731110
Number of successful extensions: 1960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1948
Number of HSP's successfully gapped: 17
Length of query: 589
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 487
Effective length of database: 6,413,494
Effective search space: 3123371578
Effective search space used: 3123371578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.9 bits)