RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10620
(589 letters)
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP
domain, ZP module, egg-sperm interaction, species-specif
recognition, speciation; HET: A2G FLC; 2.00A {Gallus
gallus} PDB: 3nk3_A*
Length = 297
Score = 89.7 bits (221), Expect = 6e-20
Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 33/282 (11%)
Query: 251 VTVHCKDTRIAVQVR-----TNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCN 305
V V C++ ++ V V T + N LG C LN+ + +C
Sbjct: 4 VAVQCQEAQLVVTVHRDLFGTGRLINAADLTLG-PAACKHSSLNAAHNTVTFAAGLHECG 62
Query: 306 TQS-VTG---VFSNTVVLQ----HHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPE 357
+ VT ++ + + V++ + ++C Y + + + P P
Sbjct: 63 SVVQVTPDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAIRPTWSPF 122
Query: 358 MISITSAPEAPPPRIRILDTKSRE--VETVRIGDKLTFRIEIPEET--PYGIFARSCVAM 413
++++ + D S E ++GD L + E+ E P +F SCVA
Sbjct: 123 NSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAA 182
Query: 414 AK---DSKSTFQIIDDEGCPVDPNIFPSFT------PDGNALQSVYEAFRFTESYG--VI 462
DS + IID GC VD + + + P + L+ + FRF +
Sbjct: 183 LSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRFRIDVFRFAGDNRNLIY 242
Query: 463 FQCNVKYCLGPCEPAVCEWGRESVESWGKRRRRSVANDTESS 504
C++K P S+ K R V +
Sbjct: 243 ITCHLKVTPADQGPDPQNKA----CSFNKARNTWVPVEGSRD 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 1e-07
Identities = 79/566 (13%), Positives = 150/566 (26%), Gaps = 227/566 (40%)
Query: 40 EACLAACLNEHRFTCRSVEYNYV-TLQCHLSDSDRRTTGQYVQFVDAQGVDYFE--NLCL 96
+ L CL E F +E N + L L + T + + + Y +
Sbjct: 81 DQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN----YITARIMAK 134
Query: 97 KPNQGCKGNRLFQVPRIGVADDKVAQYA-------SLHYYVDKELQ------------VT 137
+P + LF+ V + A + Y+ +EL+ +
Sbjct: 135 RPFDKKSNSALFR----AVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLI 188
Query: 138 NEAACRLACEIENEFLCRSFLYKG--------------------------PPIG----AQ 167
+A L+ I +G P IG A
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 168 Y--NCQLFHLDHKTLPDGPSTYLNAERPLI--------DDGQRIGSYYENYCEK-----S 212
Y +L L + L+ D + S++ + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE---SFFVSVRKAITVLFF 305
Query: 213 VGT-SHEQLP-------VVFDTTDD----PT----LNNLTRNDINCDKTGTCYDVTVHCK 256
+G +E P ++ D+ ++ P+ ++NLT+ +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV---------------- 349
Query: 257 DTRIAVQVRTNKPFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNT 316
+ + ++ P ++ I ++N +L +SG QS+ G+
Sbjct: 350 QDYVN-KTNSHLPAGKQVE---------ISLVNG---AKNLVVSG---PPQSLYGL---- 389
Query: 317 VVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRILD 376
L K K + I F + R L
Sbjct: 390 -NLTLR-----------KAKAPSGLDQSRIPF---------------SERKLKFSNRFL- 421
Query: 377 TKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKD-SKSTFQI-IDDEGCPVDPN 434
+ P + + A + KD K+ D PV
Sbjct: 422 -----------------PVASPFHSHLLVPASDLIN--KDLVKNNVSFNAKDIQIPV--- 459
Query: 435 IFPSF-TPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRESVESWGKRR 493
+ T DG+ L+ + + +E I C + P +W
Sbjct: 460 ----YDTFDGSDLRVLSGSI--SER---IVDCII------RLP--VKW------------ 490
Query: 494 RRSVANDTESSDDMTLSQEILVLDFG 519
E++ + +LDFG
Sbjct: 491 --------ETTTQFKATH---ILDFG 505
Score = 32.3 bits (73), Expect = 0.51
Identities = 42/273 (15%), Positives = 79/273 (28%), Gaps = 85/273 (31%)
Query: 328 KADKIYKVKCTYDMS----------SKNITFGMM---PIRD--PEMISITSAPEAPPPRI 372
+AD K TY S + I FG IR+ MI + +
Sbjct: 1648 RADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-FETIVDGKLKTE 1704
Query: 373 RILDTKSREVETVRIGDKLTFRIEIPEE----TPYGIFARSCVAMAKDSKSTFQIIDDEG 428
+I + TF + T F + A+ K+ F+ + +G
Sbjct: 1705 KIFKEINEHST------SYTF--RSEKGLLSAT---QFTQ--PALTLMEKAAFEDLKSKG 1751
Query: 429 CPVDPNIFPSFTPDG------NALQSVYEAFRFTESYGVIFQ--------------CNVK 468
F G AL S+ + V+F
Sbjct: 1752 LIPADATFA-----GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 469 YCLGPCEPA--VCEWGRESVESWGKRRRR------SVAN------------DTESSDDMT 508
Y + P + +E+++ +R + + N D + D T
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD--T 1864
Query: 509 LSQEILVLDFGDDKQSQFLKSNEALFNEFTKDK 541
++ VL+F ++ ++ ++L E +
Sbjct: 1865 VTN---VLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 29.6 bits (66), Expect = 3.7
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 498 ANDTESSDDMTLSQEILVLDF-G-------DDKQSQFLKSNEALFNEFTKD 540
+ ++DD + LV F G K QF + EF
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Score = 28.5 bits (63), Expect = 7.5
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 198 GQRIGSYYENYCEKSVGTSHEQLPVVFDTTDDPTLN----------NLTRN 238
G+RI Y +++ + +F ++ + + + T+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 3e-05
Identities = 72/528 (13%), Positives = 145/528 (27%), Gaps = 159/528 (30%)
Query: 47 LNEHRFTCRSV----EYNYVT-LQC-HLSDSDRR--TTGQYVQFV----DAQGVDY-FEN 93
EH++ + + E +V C + D + + + + G F
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 94 LCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFL 153
L K + + F + Y L + E R + ++
Sbjct: 71 LLSKQEEMVQ---KF----VEEVLRI--NYKFLMSPIKTE--------QRQPSMMTRMYI 113
Query: 154 -CRSFLYKGPPIGAQYNC---QLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYENYC 209
R LY + A+YN Q + + L + L + ++ DG +G
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-----LRPAKNVLIDGV-LG------S 161
Query: 210 EKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQVRTNKP 269
K+ + + C V CK
Sbjct: 162 GKTW---------------------VALD--------VCLSYKVQCK------------- 179
Query: 270 FNGRIY--ALGRSETCN--IDVLNSDLFRLDL-------TMSGQDCNTQSVTGVFSNTVV 318
+ +I+ L + +++L L+++D S S+ +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 319 LQHHS---VVMTKADKIYKVKC--TYDMSSKNI--TFGMMPIRDPEMISITSAPEAPPPR 371
+ + +V+ + K +++S K + T R +T A
Sbjct: 240 SKPYENCLLVL---LNVQNAKAWNAFNLSCKILLTT------RF---KQVTDFLSAATTT 287
Query: 372 IRILDTKSR---EVETVRI-GDKLTFRI-EIPEET----PY--GIFARSCVAMAKDSKST 420
LD S E + L R ++P E P I A +D +T
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----ESIRDGLAT 343
Query: 421 FQIIDDEGCPVDPNIFPSF----TPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEP 476
+ C I S P + +++ +F + P
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRL-------SVFPPSAHI---P--T 389
Query: 477 AVCE--WG----RESVESWGKRRRRSVANDTESSDDMTLSQEILVLDF 518
+ W + + K + S+ + + T+S + L+
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIYLEL 435
Score = 43.7 bits (102), Expect = 2e-04
Identities = 66/511 (12%), Positives = 146/511 (28%), Gaps = 188/511 (36%)
Query: 51 RFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLF-- 108
+F + NY L + R+ + +++ + ++ N++F
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR------------DRLYNDNQVFAK 128
Query: 109 -QVPRI--------GVADDKVAQYASLH--YYVDKELQVTNEAACRLACEIENEFLCRSF 157
V R+ + + + A+ + K +A ++ C S+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TW-------VALDV-----CLSY 174
Query: 158 LYKGPPIGAQYNCQLFHLDHKTLPDGPSTYLNAERPLIDDGQRIGSYYE---NYCEKSVG 214
+ + + ++F L+ N+ +++ Q++ Y+ N+ +S
Sbjct: 175 -----KVQCKMDFKIFWLN--------LKNCNSPETVLEMLQKL--LYQIDPNWTSRS-- 217
Query: 215 TSHEQLPVVFDTTDDPTLNNL--TRNDINC----DKTGTCYDVTVHCKDTRIAVQVRTNK 268
+ + + L L ++ NC +V ++ +
Sbjct: 218 DHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLL------NV----QNAKAW------N 260
Query: 269 PFNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTK 328
FN C I + T ++ + + L HHS+ +T
Sbjct: 261 AFNLS---------CKILLTTRF-----------KQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 329 ADKIYKVKCTYDMSSK--NITFGMMPIRDPEMISITSAPEAPPPRIRILDTKSREVETVR 386
+ + K + +P E+++ P R+ I+ R+
Sbjct: 301 DE-------VKSLLLKYLDCRPQDLP---REVLTTN------PRRLSIIAESIRD-GLAT 343
Query: 387 I-------GDKLTFRIEI------PEETP--Y---GIFARSCVAMAKDSKSTFQIIDDEG 428
DKLT IE P E + +F
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------------------- 381
Query: 429 CPVDPNIFPSFTPDGNALQSVYEAFRFTESYGVIFQCNVKYCLGPCEPAVCEWGRESVES 488
P +I P+ L ++ ++ V+ + KY L VE
Sbjct: 382 -PPSAHI-PTIL-----LSLIWFDVIKSDVMVVVNKL-HKYSL--------------VEK 419
Query: 489 WGKRRRRSV-----ANDTESSDDMTLSQEIL 514
K S+ + ++ L + I+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIV 450
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG
GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A
2feb_A
Length = 791
Score = 40.8 bits (95), Expect = 0.001
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 18 FERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTG 77
+ + + + + E C A C + FTCR+ +Y+ QC + +R+++
Sbjct: 6 YVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSSI 65
Score = 33.5 bits (76), Expect = 0.22
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 124 ASLHYYVDKELQVTNEAACRLACEIENEFLCRSFLY 159
ASL K+L + C CE + EF CR+F Y
Sbjct: 12 ASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQY 47
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A
{Chloroflexus aurantiacus}
Length = 139
Score = 32.5 bits (73), Expect = 0.14
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 307 QSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITS 363
Q+VT F N +Q H+ ++ K + S +P +I+ +
Sbjct: 43 QTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESP 99
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor,
disulfide bond, glycoprotein, kringle, pyrrolidone
carboxylic acid, serine protea homolog; 1.70A {Homo
sapiens} PDB: 3hmt_A 2hgf_A 3hmr_A
Length = 101
Score = 30.1 bits (67), Expect = 0.65
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 18 FERVPNKMIRGLDNALIYTS----TKEACLAACLNEHR--FTCRSVEYNYVTLQCHLSDS 71
F++ + +D AL + T + C C FTC++ ++ QC
Sbjct: 17 FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPF 76
Query: 72 DRRTTGQYVQF 82
+ ++G +F
Sbjct: 77 NSMSSGVKKEF 87
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Length = 161
Score = 30.3 bits (67), Expect = 1.0
Identities = 21/139 (15%), Positives = 32/139 (23%), Gaps = 33/139 (23%)
Query: 36 TSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENLC 95
+ E C A C C YN + CH+ + D G C
Sbjct: 30 DVSLEQCAAQCKAVDG--CTHFTYNDDSKMCHVKEGK-------PDLYDLTGGKTASRSC 80
Query: 96 LKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDKELQVTNEAACRLACEIENEFLCR 155
+ + P + + + A C+ AC + C
Sbjct: 81 DRSCF-EQHVSYEGAPDVM-----------------TAMVTSQSADCQAACAADP--SCE 120
Query: 156 SFLYKGPPIGAQYNCQLFH 174
F Y C
Sbjct: 121 IFTYNEH----DQKCTFKG 135
>3iyk_G VP2; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 600
Score = 30.8 bits (69), Expect = 1.5
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 12/102 (11%)
Query: 205 YENYCEKSVGTSHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDVTVHCKDTRIAVQV 264
E + S G H + + N+L R + Y + A +
Sbjct: 152 VEPIEDASKGCLHTRTMM---------WNHLVRIETFHAAQEVAYTLKPTYDIVVHAERR 202
Query: 265 RTNKPF---NGRIYALGRSETCNIDVLNSDLFRLDLTMSGQD 303
++PF + + GR + ++ + D LT
Sbjct: 203 DRSQPFRPGDQTLINFGRGQKVAMNHNSYDKMVEGLTHLVIR 244
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic
acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB:
2vzq_A* 2vzr_A*
Length = 127
Score = 29.0 bits (65), Expect = 2.0
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 388 GDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPSFTPDGNALQ 447
G + + + +P Y + R A + + F S T A
Sbjct: 38 GSSVEWTVTVPSAGTYDVVVR--YANGTTTSRPLDFSVNGSISASGVAFGS-TGTWPAWT 94
Query: 448 SVY 450
+
Sbjct: 95 TKT 97
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 29.9 bits (68), Expect = 2.1
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 420 TFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEA 452
TFQI+++EG V+ P + + L+ +
Sbjct: 22 TFQILNEEGEVVNEEAMPELSDE--QLKELMRR 52
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 29.4 bits (67), Expect = 2.6
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 493 RRRSVANDTESSDDMTLSQEILVLDFGDDKQSQF 526
V TE+ ++ +++LD G +Q+
Sbjct: 7 HSSGVDLGTENLYFQSMEGAVVILDAG----AQY 36
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 29.2 bits (66), Expect = 4.0
Identities = 5/33 (15%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 420 TFQIIDDEGCPVDPNIFPSFTPDGNALQSVYEA 452
++++D +G ++P+ P + + +Y++
Sbjct: 33 IYRVMDRQGQIINPSEDPHLPKE--KVLKLYKS 63
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium
thermocellum} PDB: 2w1w_A
Length = 144
Score = 28.2 bits (63), Expect = 4.3
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 388 GDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPNIFPS 438
G + + + P Y + R A + +I + F S
Sbjct: 39 GGYIEWNVNAPSSGSYALIFR--YANGTTANRPMRITVNGNIVKPSMDFVS 87
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem
repeat, PAN_AP, P galactose-binding lectin, cellular
adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Length = 138
Score = 27.5 bits (60), Expect = 8.1
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 29/150 (19%)
Query: 13 LRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLNEHRFTCRSVEYNYVTLQCHLSDSD 72
L F N R ++++ ++ + C+ C C YN + +CHL
Sbjct: 5 LDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPT--CSHFTYNKNSKKCHLKAGA 62
Query: 73 RRTTGQYVQFVDAQGVDYFENLCLKPNQGCKGNRLFQVPRIGVADDKVAQYASLHYYVDK 132
+F G C D
Sbjct: 63 -------PEFYTYTGDMTGPRSCEHNC-----------SDACWMDGNN-------PLAVW 97
Query: 133 ELQVTNEAACRLACEIENEFLCRSFLYKGP 162
+ A C AC C + ++G
Sbjct: 98 DYSGQPPALCWAACMGTPG--CDLYTFQGM 125
>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine
kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB:
3hn4_A*
Length = 264
Score = 28.1 bits (61), Expect = 8.3
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 37 STKEACLAACLNEHR--FTCRSVEYNYVTLQCHLSDSDRRTTGQYVQFVDAQGVDYFENL 94
+T + C C FTC++ ++ QC + ++G V+ D +EN
Sbjct: 40 NTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSG--VKKEFGHEFDLYENK 97
Query: 95 CLKPN 99
N
Sbjct: 98 DYIRN 102
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 27.7 bits (62), Expect = 8.5
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 324 VVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMISITSA 364
V + K DKI V+ + F + ++ SA
Sbjct: 127 VAVNKLDKIKNVQEVINF--LAEKFEVPLSEIDKVFIPISA 165
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin
fold, carbohydrate binding, domain swapping, O antigen
export; HET: PG4; 1.30A {Escherichia coli}
Length = 188
Score = 27.6 bits (61), Expect = 9.0
Identities = 2/27 (7%), Positives = 8/27 (29%)
Query: 371 RIRILDTKSREVETVRIGDKLTFRIEI 397
I ++ + F +++
Sbjct: 52 DYHIQSAGVDFPPSLTGNQQTDFLMKV 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.420
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,918,190
Number of extensions: 528089
Number of successful extensions: 1107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 24
Length of query: 589
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 490
Effective length of database: 3,937,614
Effective search space: 1929430860
Effective search space used: 1929430860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.3 bits)