RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10620
         (589 letters)



>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 91

 Score = 56.9 bits (137), Expect = 6e-11
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 18 FERVPNKMIRGLDNALIY----TSTKEACLAACLN--EHRFTCRSVEYNYVTLQCHLSDS 71
          F++     +  +D AL       +T + C   C       FTC++  ++    QC     
Sbjct: 7  FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPF 66

Query: 72 DRRTTGQYVQFVDAQGVDYFEN 93
          +  ++G  V+       D +EN
Sbjct: 67 NSMSSG--VKKEFGHEFDLYEN 86


>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of group
           A rotavirus {Bovine rotavirus [TaxId: 10927]}
          Length = 184

 Score = 27.9 bits (62), Expect = 2.7
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 262 VQVRTNKP-----FNGRIYALGRSETCNIDVLNSDLFRLDLTMSGQDCNTQSVTGVFSNT 316
           V +R N        NG+I    ++    I   N D  RL   +      T +V  +F N 
Sbjct: 104 VILRPNNVEIEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNA 163

Query: 317 VVLQHHSVVM 326
              +HH+ V 
Sbjct: 164 QPFEHHATVG 173


>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
           {Foot-and-mouth disease virus FMDV [TaxId: 12110]}
          Length = 199

 Score = 27.8 bits (61), Expect = 3.1
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 292 LFRLDLTMSGQDCNTQSVTGVFSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNIT---- 347
              ++L + G+       TGVF    ++  H +   K DKI         S   +     
Sbjct: 10  TKPVELNLDGKTVAICCATGVFGTAYLVPRH-LFAEKYDKIMLDGRAMTDSDYRVFEFEI 68

Query: 348 --FGMMPIRDPEMISITSAPEAPPPRIRILDTKSREVET 384
              G   + D  ++ +    +         DT   +  T
Sbjct: 69  KVKGQDMLSDAALMVLHRGNKVRDITKHFRDTARMKKGT 107


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 27.5 bits (60), Expect = 5.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 420 TFQIIDDEGCPVDPNIFPSFTPD 442
           TFQI+++EG  V+    P  + +
Sbjct: 19  TFQILNEEGEVVNEEAMPELSDE 41


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 27.4 bits (61), Expect = 5.8
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 207 NYCEKSVGT------SHEQLPVVFDTTDDPTLNNLTRNDINCDKTGTCYDV-TVHCKDTR 259
             C  SV T      S E +P+ +          L  N+   + TG C +V TV C  T 
Sbjct: 48  GSCNTSVITQACPKVSFEPIPIHYCA--PAGFAILKCNNKTFNGTGPCTNVSTVQC--TH 103

Query: 260 -IAVQVRTNKPFNG 272
            I   V T    NG
Sbjct: 104 GIRPVVSTQLLLNG 117


>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 395

 Score = 27.1 bits (59), Expect = 7.2
 Identities = 4/23 (17%), Positives = 13/23 (56%)

Query: 420 TFQIIDDEGCPVDPNIFPSFTPD 442
            ++++D +G  ++P+  P    +
Sbjct: 28  IYRVMDRQGQIINPSEDPHLPKE 50


>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli
           [TaxId: 562]}
          Length = 98

 Score = 25.3 bits (55), Expect = 7.8
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 370 PRIRILDTKSREVETVRIGDKLTFRIEIPEETPYGIFARSCVAMAKDSKSTFQIIDDEG 428
           P IR +  +     +++ G   TF  +        + A +      D      ++ D+G
Sbjct: 1   PEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDG 59


>d1nc7a_ b.123.1.1 (A:) Hypothetical protein TM1070 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 116

 Score = 25.4 bits (56), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 395 IEIPEETPYGIFARSCV 411
           + IP+  PY I A S V
Sbjct: 72  LGIPKCKPYSIMAESNV 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,207,990
Number of extensions: 104755
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 11
Length of query: 589
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 499
Effective length of database: 1,171,896
Effective search space: 584776104
Effective search space used: 584776104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)