BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10623
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 80/109 (73%), Gaps = 3/109 (2%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQ KT GYP VN+ +FT SWR GL FNA++H HRPDL+DF L+ NL NAF++A
Sbjct: 15 WCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLA 74
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN---EMKSG 131
ELG+ +LLD EDV+ +PDEKS+ITYVA+YYH F++MK E KSG
Sbjct: 75 EKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGKSG 123
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 73/99 (73%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQ KT GYP VNI +FT SWR G+ FNALIH HRPDLIDF +L+ + NL NAF++A
Sbjct: 11 WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA 70
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
LG+ +LLD ED+ PDEKS+ITYV +YYH F++M
Sbjct: 71 EQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKM 109
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 73/99 (73%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQ KT GYP VNI +FT SWR G+ FNALIH HRPDLIDF +L+ + NL NAF++A
Sbjct: 10 WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA 69
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
LG+ +LLD ED+ PDEKS+ITYV +YYH F++M
Sbjct: 70 EQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKM 108
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQRKT Y VNIQ+F SW+ GLGF ALIH HRP+LID+ +L+ + NLN AFDVA
Sbjct: 128 WCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVA 187
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFARMKNEMKSG 131
L IP++LDAED V T RPDEK+++TYV+S+YH F+ + ++ G
Sbjct: 188 EKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQEFLEPG 234
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQRKT Y VN+Q+F SW+ GL FNALIH HRP+LI++ +L+ + NLNNAF+VA
Sbjct: 133 WCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVA 192
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFARMKNEM 128
L IP++LDAED V+T RPDE++++TYV+S+YH F+ +E+
Sbjct: 193 EKYLDIPKMLDAEDIVNTARPDEEAIMTYVSSFYHAFSGALDEL 236
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
W QRKT Y VNIQ+F SW+ GLGF ALIH HRP+LID+ +L+ + NLN AFDVA
Sbjct: 129 WYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVA 188
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFARMKNEMKSGRRIANV 137
L IP++LDAED V T RPDEK+++TYV+S+YH F+ + + RI V
Sbjct: 189 EKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKV 241
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQRKT Y VN+Q+F SW+ GL ALIH HRPDLID+++L+ I NLN AF+VA
Sbjct: 144 WCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVA 203
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFA 122
L IP++LDAED V+T +PDEK+++TYV+ +YH FA
Sbjct: 204 EKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 241
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQRKT Y VN+Q+F SW+ GL ALIH HRPDLID+++L+ I NLN AF+VA
Sbjct: 148 WCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVA 207
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFA 122
L IP++LDAED V+T +PDEK+++TYV+ +YH FA
Sbjct: 208 EKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 245
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
W QR GY G+ +FT SWR G FNA+IH H+P LID +++ +++NL+ AF VA
Sbjct: 197 WSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVA 256
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
+LG+ RLLD EDVD +PDEKS+ITYV+S Y R+
Sbjct: 257 ERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRV 295
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
W QR GY G+ +FT SWR G FNA+IH H+P LID +++ +++NL+ AF VA
Sbjct: 144 WSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVA 203
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
+LG+ RLLD EDVD +PDEKS+ITYV+S Y R+
Sbjct: 204 ERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRV 242
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
W QR GY G+ +FT SWR G FNA+IH H+P LID +++ +++NL+ AF VA
Sbjct: 141 WSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVA 200
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
+LG+ RLLD EDVD +PDEKS+ITYV+S Y R+
Sbjct: 201 ERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRV 239
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF-SQLQPTRHIDNLNNAFDV 84
W ++ T YP VN+ +FT SW GL NALIH+HRPDL D+ S + L +AF++
Sbjct: 143 WVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNI 202
Query: 85 ASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFAR 123
A +LGI +LLD EDVDTT PD+KS++ Y+ S + +
Sbjct: 203 ARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLPQ 241
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQR+T+GY GVN+ D T SW+SGL A+IH +RPDLIDF L N AFD+A
Sbjct: 17 WCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIA 76
Query: 86 STELGI-PRLLDAEDVDTTRPDEKSVITYVASYYHTF 121
ELGI P + E PD+ S++ Y+ +Y F
Sbjct: 77 EKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMF 113
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
W ++ T Y VN+ +FT SW GL FNA++H H+PDL + ++ I+ L +AF A
Sbjct: 16 WVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKA 75
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFAR 123
T LGI +LLD EDV PD+KS+I Y+ S + +
Sbjct: 76 QTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVLPQ 113
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQ++T GY VN+ D T SWRSGL A+IH RP+LI+F L ++N AFDVA
Sbjct: 17 WCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLAFDVA 76
Query: 86 STELGIPRLLDAEDVDTTR-PDEKSVITYVASYYHTF 121
E GIP + +++ + + PD+ S++ Y++ +Y F
Sbjct: 77 EREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELF 113
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
W ++ T Y VN+ +FT SW GL FNA++H H+PDL + ++ I+ L +AF A
Sbjct: 129 WVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKXSPIERLEHAFSKA 188
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFAR 123
T LGI +LLD EDV PD+KS+I Y+ S + +
Sbjct: 189 QTYLGIEKLLDPEDVAVRLPDKKSIIXYLTSLFEVLPQ 226
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WC+ KT GY V+IQ+F+ SW G+ F AL+H P+ D+ QL P N AF A
Sbjct: 15 WCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSA 74
Query: 86 STELGIPRLLDAEDVDTTR-PDEKSVITYVASYYHTFAR---MKNEMKSG 131
T P+LLD ED+ R PD K V TY+ +Y + +K + SG
Sbjct: 75 ETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKKSSG 124
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WC+ T Y GV I +FT SWR+GL F A++H RPDLID+ L P +N A+D
Sbjct: 17 WCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYD-G 75
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYV 114
+GI RLL+ D V PD+ +V+TY+
Sbjct: 76 FASIGISRLLEPSDMVLLAIPDKLTVMTYL 105
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WC+ T Y V+IQ+F+ SW SG+ F ALIH P+ D+++L P + N AF A
Sbjct: 12 WCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDYAELDPAKRRHNFTLAFSTA 71
Query: 86 STELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFAR 123
+LL+ +D V PD K V TY+ Y + +
Sbjct: 72 EKLADCAQLLEVDDMVRLAVPDSKCVYTYIQELYRSLVQ 110
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQ +T GYPGV++ D + SW GL AL++ +P L++ S+LQ ++ A VA
Sbjct: 21 WCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVA 80
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
ELGI ++ A+ V D +I Y++ ++ F M
Sbjct: 81 ENELGITPVVSAQAV-VAGSDPLGLIAYLSHFHSAFKSM 118
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNNAFDVA 85
WCQ +T GYPGV++ D + SW GL AL++ +P L++ S+LQ ++ A VA
Sbjct: 15 WCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVA 74
Query: 86 STELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTF 121
ELGI ++ A+ V D +I Y++ ++ F
Sbjct: 75 ENELGITPVVSAQAV-VAGSDPLGLIAYLSHFHSAF 109
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 29 RKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDVAST 87
R N P + I +F +W+ G AL+ + P L D+ P + +DN A A
Sbjct: 151 RIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADD 210
Query: 88 ELGIPRLLDAEDVDTTRPDEKSVITYVASY 117
LG+P+++ E++ DE SV+TY++ +
Sbjct: 211 WLGVPQVITPEEIIHPDVDEHSVMTYLSQF 240
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 32 NGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDVASTELG 90
N P + I +F +W+ G AL+ + P L D+ P + +DN A A LG
Sbjct: 154 NKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLG 213
Query: 91 IPRLLDAEDVDTTRPDEKSVITYVASY 117
+P+++ E++ DE SV+TY++ +
Sbjct: 214 VPQVITPEEIIHPDVDEHSVMTYLSQF 240
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDV 84
W Q N P + I +F +W+ G AL+ + P L D+ P + +DN A
Sbjct: 148 WIQ---NKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQ 204
Query: 85 ASTELGIPRLLDAEDVDTTRPDEKSVITYVASY 117
A LG+P+++ E++ DE SV+TY++ +
Sbjct: 205 ADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQF 237
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 32 NGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDVASTELG 90
N P + I +F +W+ G AL+ + P L D+ P + +DN A A LG
Sbjct: 154 NKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLG 213
Query: 91 IPRLLDAEDVDTTRPDEKSVITYVASY 117
+P+++ E++ DE SV+TY++ +
Sbjct: 214 VPQVITPEEIIHPDVDEHSVMTYLSQF 240
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDV 84
W Q N P + I +F+ W+SG AL+ + P L D+ ++ + N A
Sbjct: 178 WIQ---NKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQ 234
Query: 85 ASTELGIPRLLDAEDVDTTRPDEKSVITYVASY 117
A LGIP+++ E++ DE SV+TY++ +
Sbjct: 235 ADDWLGIPQVITPEEIVDPNVDEHSVMTYLSQF 267
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDV 84
W Q N P + I +F+ W+SG AL+ + P L D+ ++ + N A
Sbjct: 175 WIQ---NKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQ 231
Query: 85 ASTELGIPRLLDAEDVDTTRPDEKSVITYVASY 117
A LGIP+++ E++ DE SV+TY++ +
Sbjct: 232 ADDWLGIPQVITPEEIVDPNVDEHSVMTYLSQF 264
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 32 NGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDVASTELG 90
N P + I +F +W+ G AL+ + P L D+ P + +DN A A LG
Sbjct: 161 NKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAXQQADDWLG 220
Query: 91 IPRLLDAEDVDTTRPDEKSVITYVASY 117
+P+++ E++ DE SV TY++ +
Sbjct: 221 VPQVITPEEIIHPDVDEHSVXTYLSQF 247
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DFSQLQPTRHIDNLNNAFDV 84
W Q N P + I +F+ W+SG AL+ + P L D+ ++ + N A
Sbjct: 178 WIQ---NKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQ 234
Query: 85 ASTELGIPRLLDAEDVDTTRPDEKSVITYVASY 117
A LGIP+++ E++ D+ SV+TY++ +
Sbjct: 235 ADDWLGIPQVITPEEIVDPNVDKHSVMTYLSQF 267
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 51 GFNALIHAHRPDLIDFSQLQPTRHI-----DNLNNAFDVASTELGIP------RLLDAED 99
GF + H+ +++ +LQ +HI D +N+A + ++GI A D
Sbjct: 560 GFAGVFPEHKYEIV--KKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASD 617
Query: 100 VDTTRPDEKSVITYVASYYHTFARMKN 126
+ T P +I+ V + F RMKN
Sbjct: 618 IVLTEPGLSVIISAVLTSRAIFQRMKN 644
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 124 MKNEMKSGRRIANVS-FLTLILFSLKSGEELSVTKI 158
+K E K G++ VS F TL+L GEE S+ +I
Sbjct: 560 LKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEI 595
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 124 MKNEMKSGRRIANVS-FLTLILFSLKSGEELSVTKI 158
+K E K G++ VS F TL+L GEE S+ +I
Sbjct: 545 LKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEI 580
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 153 LSVTKIILPYSAVLCVRESGSPMNQIVSQMMDADKKKMMYERLNRD 198
L+V+K++L ++LC P+ ++ + +DK+K Y RL R+
Sbjct: 102 LTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEK--YNRLARE 145
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 153 LSVTKIILPYSAVLCVRESGSPMNQIVSQMMDADKKKMMYERLNRD 198
L+V+K++L ++LC P+ ++Q+ +DK+K Y R R+
Sbjct: 103 LTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEK--YNRHARE 146
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 153 LSVTKIILPYSAVLCVRESGSPMNQIVSQMMDADKKKMMYERLNRD 198
L+V+K++L ++LC P+ ++Q+ +DK+K Y R R+
Sbjct: 99 LTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEK--YNRHARE 142
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 153 LSVTKIILPYSAVLCVRESGSPMNQIVSQMMDADKKKMMYERLNRD 198
L+V+K++L ++LC P+ ++Q+ +DK+K Y R R+
Sbjct: 103 LTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEK--YNRHARE 146
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 153 LSVTKIILPYSAVLCVRESGSPMNQIVSQMMDADKKKMMYERLNRD 198
L+V+K++L ++LC P+ ++Q+ +DK+K Y R R+
Sbjct: 115 LTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEK--YNRHARE 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,793,106
Number of Sequences: 62578
Number of extensions: 225805
Number of successful extensions: 534
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 42
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)