RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10623
(216 letters)
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 211 bits (540), Expect = 3e-71
Identities = 70/120 (58%), Positives = 87/120 (72%)
Query: 13 SSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPT 72
SS AKDALLLWCQ KT GYP VN+ +FT SWR GL FNA++H HRPDL+DF L+
Sbjct: 2 SSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC 61
Query: 73 RHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKNEMKSGR 132
NL NAF++A ELG+ +LLD EDV+ +PDEKS+ITYVA+YYH F++MK G+
Sbjct: 62 NAHYNLQNAFNLAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGK 121
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 207 bits (529), Expect = 1e-69
Identities = 69/109 (63%), Positives = 83/109 (76%)
Query: 16 KKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHI 75
KKSAKDALLLWCQ KT GYP VNI +FT SWR G+ FNALIH HRPDLIDF +L+ +
Sbjct: 1 KKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAH 60
Query: 76 DNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
NL NAF++A LG+ +LLD ED+ PDEKS+ITYV +YYH F++M
Sbjct: 61 YNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKM 109
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 205 bits (524), Expect = 6e-69
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 15 EKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRH 74
++ +++ LL W ++ T Y VN+ +FT SW GL FNA++H H+PDL + ++
Sbjct: 5 QQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSP 64
Query: 75 IDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
I+ L +AF A T LGI +LLD EDV PD+KS+I Y+ S + +
Sbjct: 65 IERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVLPQQVT 116
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 204 bits (520), Expect = 3e-68
Identities = 49/126 (38%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 13 SSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPT 72
SS K LL WC+ KT GY V+IQ+F+ SW G+ F AL+H P+ D+ QL P
Sbjct: 2 SSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQ 61
Query: 73 RHIDNLNNAFDVASTELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFARM---KNEM 128
N AF A T P+LLD ED V PD K V TY+ +Y + K +
Sbjct: 62 NRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKK 121
Query: 129 KSGRRI 134
SG
Sbjct: 122 SSGPSS 127
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 200 bits (512), Expect = 4e-67
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 13 SSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPT 72
S + LL WCQR+T+GY GVN+ D T SW+SGL A+IH +RPDLIDF L
Sbjct: 4 GSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQ 63
Query: 73 RHIDNLNNAFDVASTELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFARM 124
N AFD+A ELGI ++ ++ PD+ S++ Y+ +Y F
Sbjct: 64 NVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDS 116
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 199 bits (507), Expect = 2e-66
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 13 SSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPT 72
SS ++ LL WCQ +T GYPGV++ D + SW GL AL++ +P L++ S+LQ
Sbjct: 2 SSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGL 61
Query: 73 RHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMK 125
++ A VA ELGI ++ A+ V D +I Y++ ++ F
Sbjct: 62 GALEATAWALKVAENELGITPVVSAQAV-VAGSDPLGLIAYLSHFHSAFKSGP 113
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 196 bits (501), Expect = 2e-65
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 11 NESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQ 70
+ S +A +LL+WC+ T Y GV I +FT SWR+GL F A++H RPDLID+ L
Sbjct: 2 SSGSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLN 61
Query: 71 PTRHIDNLNNAFDVASTELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFARMKN 126
P +N A+D +GI RLL+ D V PD+ +V+TY+ F+ +
Sbjct: 62 PQDIKENNKKAYD-GFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGPS 117
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 171 bits (434), Expect = 2e-53
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 1/128 (0%)
Query: 5 NSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI 64
++ S E+ SAK+ LLLWCQRKT Y VN+Q+F SW+ GL ALIH HRPDLI
Sbjct: 127 LRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186
Query: 65 DFSQLQPTRHIDNLNNAFDVASTELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFAR 123
D+++L+ I NLN AF+VA L IP++LDAED V+T +PDEK+++TYV+ +YH FA
Sbjct: 187 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246
Query: 124 MKNEMKSG 131
+ +
Sbjct: 247 AEQAETAA 254
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 169 bits (430), Expect = 5e-53
Identities = 58/129 (44%), Positives = 81/129 (62%)
Query: 1 MRGWNSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHR 60
+ S + + SE +AK+ LLLW QR GY G+ +FT SWR G FNA+IH H+
Sbjct: 116 LHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHK 175
Query: 61 PDLIDFSQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHT 120
P LID +++ +++NL+ AF VA +LG+ RLLD EDVD +PDEKS+ITYV+S Y
Sbjct: 176 PMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDA 235
Query: 121 FARMKNEMK 129
R+ +
Sbjct: 236 MPRVPGAQE 244
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 168 bits (427), Expect = 6e-52
Identities = 58/124 (46%), Positives = 80/124 (64%)
Query: 1 MRGWNSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHR 60
+ S + + SE +AK+ LLLW QR GY G+ +FT SWR G FNA+IH H+
Sbjct: 172 LHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHK 231
Query: 61 PDLIDFSQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHT 120
P LID +++ +++NL+ AF VA +LG+ RLLD EDVD +PDEKS+ITYV+S Y
Sbjct: 232 PLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDA 291
Query: 121 FARM 124
R+
Sbjct: 292 MPRV 295
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 155 bits (393), Expect = 2e-47
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 9 EENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF-S 67
++ +++ LL W ++ T YP VN+ +FT SW GL NALIH+HRPDL D+ S
Sbjct: 126 NIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNS 185
Query: 68 QLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMK 125
+ L +AF++A +LGI +LLD EDVDTT PD+KS++ Y+ S + +
Sbjct: 186 VVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLPQQV 243
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 140 bits (353), Expect = 3e-41
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 4 WNSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDL 63
E E K S ++ LL W I +F+ + + L++ P
Sbjct: 154 LLRDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKG 213
Query: 64 ---------IDFSQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYV 114
I+ S T + + A +LG + + DV + + K + +V
Sbjct: 214 QKEGEPRIDINMSGFNETDDLKRAESMLQQAD-KLGCRQFVTPADVVS--GNPKLNLAFV 270
Query: 115 ASYYH 119
A+ ++
Sbjct: 271 ANLFN 275
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 137 bits (347), Expect = 3e-40
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 8 DEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DF 66
+EE+E ++K++ K LL W Q K P + I +F+ W+SG AL+ + P L D+
Sbjct: 160 EEEDEEAKKQTPKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSCAPGLCPDW 216
Query: 67 SQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHT 120
++ + N A A LGIP+++ E++ D+ SV+TY++ +
Sbjct: 217 DSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNVDKHSVMTYLSQFPKA 270
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 136 bits (343), Expect = 5e-40
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 8 DEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI-DF 66
DE ++ ++K++ K LL W Q K P + I +F +W+ G AL+ + P L D+
Sbjct: 133 DEGDDDAKKQTPKQRLLGWIQNK---IPYLPITNFNQNWQDGKALGALVDSCAPGLCPDW 189
Query: 67 SQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYH 119
P + +DN A A LG+P+++ E++ DE SV+TY++ +
Sbjct: 190 ESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPK 242
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 135 bits (341), Expect = 5e-37
Identities = 69/134 (51%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 5 NSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLI 64
++ S E+ SAK+ LLLW QRKT Y VNIQ+F SW+ GLGF ALIH HRP+LI
Sbjct: 108 LRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELI 167
Query: 65 DFSQLQPTRHIDNLNNAFDVASTELGIPRLLDAED-VDTTRPDEKSVITYVASYYHTFAR 123
D+ +L+ + NLN AFDVA L IP++LDAED V T RPDEK+++TYV+S+YH F+
Sbjct: 168 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSG 227
Query: 124 MKNEMKSGRRIANV 137
+ + RI V
Sbjct: 228 AQKAETAANRICKV 241
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 127 bits (320), Expect = 1e-34
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 11 NESSEKKSAKDALLLWCQRK-TNGYPGVNIQDFTG-SWRSGLGFNALIHAHRPDLIDFSQ 68
K + ++ W G G I+ F S +G+ ++H + + +D++
Sbjct: 401 LSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNL 460
Query: 69 LQPTR----HIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYH 119
+ I N A +A +LG + ED+ RP + V+ ++ S
Sbjct: 461 VTDGSTEELAIQNARLAISIAR-KLGAVIFILPEDIVAVRP--RLVLHFIGSLMA 512
Score = 123 bits (310), Expect = 3e-33
Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 8 DEENESSEKKSAKDALLLWCQRKTNGY-PGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF 66
DE + + + LL W + +F+ G + L++ P+L
Sbjct: 151 DETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSR 210
Query: 67 SQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
+ LQ T + A +L + L + + K + +VA ++T ++
Sbjct: 211 APLQTTDVLQRAEQVLQNAE-KLDCRKYLTPTAMVA--GNPKLNLAFVAHLFNTHPGLEP 267
Query: 127 EMKSGRRI 134
+ +
Sbjct: 268 LNEEEKPE 275
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 122 bits (307), Expect = 8e-33
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 4/122 (3%)
Query: 8 DEENESSEKKSAKDALLLWCQRK-TNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF 66
++ E + + LL W G + +F+ + + L++ P+ D
Sbjct: 142 SDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDP 201
Query: 67 SQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
+ L ++ A + R L AE++ + +VA +H +
Sbjct: 202 ATLDAKDPLERAELVLSHAE-RMNCKRYLTAEEIVE--GSSTLNLAFVAQIFHERNGLNK 258
Query: 127 EM 128
+
Sbjct: 259 DG 260
Score = 121 bits (304), Expect = 2e-32
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 9 EENESSEKKSAKDALLLWCQRKT-NGYPGVNIQDFTG-SWRSGLGFNALIHAHRPDLIDF 66
+ + K+ +L W RK + I+ F S SGL F L+ A P ++++
Sbjct: 388 LRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNW 447
Query: 67 SQLQPTRHID--NLNNAFDVAS-TELGIPRLLDAEDVDTTRPDEKSVITYVASYYH 119
+ + D LN + V+ +LG L ED+ ++K ++ AS +
Sbjct: 448 NLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVE--VNQKMILILTASIMY 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-06
Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 58/220 (26%)
Query: 4 WNSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDL 63
W + + + L+ Q K + I +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--------------------IP----SI 431
Query: 64 IDFSQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASY--YHTF 121
L+ ++N IP+ D++D+ D+ Y S+ +H
Sbjct: 432 ----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIGHH-- 480
Query: 122 ARMKNEMKSGRRIANVSFLTLILFSLKSGEELSVTKIILPYSAVLCVRESGSPMNQIV-- 179
+K+ ++ ++ + E+ KI +A + + Q+
Sbjct: 481 ------LKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQLKFY 530
Query: 180 -SQMMDADKKKMMYERLNRDLLEYLP-----VYHARKNNL 213
+ D D K YERL +L++LP + ++ +L
Sbjct: 531 KPYICDNDPK---YERLVNAILDFLPKIEENLICSKYTDL 567
Score = 29.8 bits (66), Expect = 0.79
Identities = 33/215 (15%), Positives = 64/215 (29%), Gaps = 47/215 (21%)
Query: 6 SLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLID 65
SLD + + K LL + + P + T + R I D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIR-DGLATWD 345
Query: 66 FSQLQPTRHI--DNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFAR 123
+H+ D L + + L+ + R + +
Sbjct: 346 N-----WKHVNCDKLTTIIESS---------LNVLEPAEYRK-----------MFDRLSV 380
Query: 124 MKNEMKSGRRIANVSFLTLILF--SLKSGEELSVTKIILPYSAVLCVRESGSPMNQIVSQ 181
A++ + L L + + + V + YS L ++ I S
Sbjct: 381 FPPS-------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSI 431
Query: 182 MMDADKKKMMYERLNRDLLEYLPVYHARKNNLFDS 216
++ K L+R ++++ Y+ K FDS
Sbjct: 432 YLELKVKLENEYALHRSIVDH---YNIPKT--FDS 461
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Length = 124
Score = 45.0 bits (106), Expect = 1e-06
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 13 SSEKKSAKDALLLWCQRK-TNGYPGVNIQDFT-GSWRSGLGFNALIHAHRPDLIDFSQLQ 70
SS D ++ W R + +IQ F + S L LI A +P I++ ++
Sbjct: 2 SSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK 61
Query: 71 PTRHID--NLNNAFDVAST--ELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
+ NNA S +G ED+ +P K V+T A + +
Sbjct: 62 SGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKP--KMVMTVFACLMGRGMKRVS 119
Query: 127 EMKSG 131
SG
Sbjct: 120 GPSSG 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 1e-04
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 59/200 (29%)
Query: 43 TGSWRS--GLGFNAL-------IHAHR--PDLIDFSQLQPTRHIDNLNNAFDVASTELGI 91
T SW S A+ + + P+ + L P+ D+L N V S L I
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPN----TSLPPSILEDSLENNEGVPSPMLSI 341
Query: 92 PRLLDAE---DVDTTR---PDEKSVITYVASYYHTFARMKNEMKSGRRIANVS------- 138
L + V+ T P K V ++ + N G + VS
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQV--EIS--------LVN----GAKNLVVSGPPQSLY 387
Query: 139 FLTLILFSLKSGEELSVTKIILPYS---AVLCVR--ESGSPMNQIVSQMMDADKKKMMYE 193
L L L K+ L ++I P+S R SP + S ++ ++ +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRI--PFSERKLKFSNRFLPVASPFH---SHLL-VPASDLINK 441
Query: 194 RLNRDLLEY------LPVYH 207
L ++ + + +PVY
Sbjct: 442 DLVKNNVSFNAKDIQIPVYD 461
Score = 28.1 bits (62), Expect = 2.5
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 26/87 (29%)
Query: 36 GVNIQDFTGS---------------WRSGLGFNALIHAHRPDLIDFSQLQPTRHIDNLNN 80
G +++ +GS W + F A H ++DF + + L +
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT---H---ILDFGPGGASG-LGVLTH 517
Query: 81 AFDVASTELGIPRLLDAEDVDTTRPDE 107
+ G+ R++ A +D D+
Sbjct: 518 RNKDGT---GV-RVIVAGTLDINPDDD 540
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn
complex, rRNA processing, transferase; HET: ADP; 1.75A
{Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Length = 282
Score = 27.6 bits (61), Expect = 2.7
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 52 FNALIHAHRPDLIDFSQLQPTRH----------IDNLNNAF 82
+N L+ +IDF Q + N+ F
Sbjct: 222 YNVLVSEEGIWIIDFPQSVEVGEEGWREILERDVRNIITYF 262
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 27.0 bits (59), Expect = 4.6
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 181 QMMDADKKKMMYERLNRDLLE 201
+ + + Y L LL+
Sbjct: 5 RANELQLRWQEYRELVLLLLQ 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,266,885
Number of extensions: 187196
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 33
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)