RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10623
(216 letters)
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 155 bits (394), Expect = 8e-50
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 15 EKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRH 74
++ +++ LL W ++ T Y VN+ +FT SW GL FNA++H H+PDL + ++
Sbjct: 2 QQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSP 61
Query: 75 IDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYH 119
I+ L +AF A T LGI +LLD EDV PD+KS+I Y+ S +
Sbjct: 62 IERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFE 106
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 153 bits (388), Expect = 6e-49
Identities = 56/108 (51%), Positives = 74/108 (68%)
Query: 14 SEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTR 73
SE +AK+ LLLW QR GY G+ +FT SWR G FNA+IH H+P LID +++
Sbjct: 2 SEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQT 61
Query: 74 HIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTF 121
+++NL+ AF VA +LG+ RLLD EDVD +PDEKS+ITYV+S Y
Sbjct: 62 NLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAM 109
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 152 bits (386), Expect = 1e-48
Identities = 68/108 (62%), Positives = 82/108 (75%)
Query: 17 KSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQLQPTRHID 76
KSAKDALLLWCQ KT GYP VNI +FT SWR G+ FNALIH HRPDLIDF +L+ +
Sbjct: 1 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 60
Query: 77 NLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARM 124
NL NAF++A LG+ +LLD ED+ PDEKS+ITYV +YYH F++M
Sbjct: 61 NLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKM 108
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 146 bits (370), Expect = 6e-46
Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 12 ESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF-SQLQ 70
++ +++ LL W ++ T YP VN+ +FT SW GL NALIH+HRPDL D+ S +
Sbjct: 10 AGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVS 69
Query: 71 PTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
L +AF++A +LGI +LLD EDVDTT PD+KS++ Y+ S + + +
Sbjct: 70 QQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLPQQVS 125
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 127 bits (319), Expect = 7e-35
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 8 DEENESSEKKSAKDALLLWCQRKT-NGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF 66
++ E + + LL W G + +F+ + + L++ P+ D
Sbjct: 136 SDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDP 195
Query: 67 SQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
+ L ++ A + R L AE++ + +VA +H +
Sbjct: 196 ATLDAKDPLERAELVLSHA-ERMNCKRYLTAEEIVE--GSSTLNLAFVAQIFHERNGLNK 252
Query: 127 EMK 129
+ K
Sbjct: 253 DGK 255
Score = 123 bits (311), Expect = 7e-34
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 8 DEENESSEKKSAKDALLLWCQRKTNGY-PGVNIQDFTG-SWRSGLGFNALIHAHRPDLID 65
+ + K+ +L W RK + I+ F S SGL F L+ A P +++
Sbjct: 381 SLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVN 440
Query: 66 FSQLQPTRHID----NLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYH 119
++ + D N VA +LG L ED+ ++K ++ AS +
Sbjct: 441 WNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLLPEDIV--EVNQKMILILTASIMY 495
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 126 bits (318), Expect = 1e-34
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 5 NSLDEENESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTG-SWRSGLGFNALIHAHRPDL 63
+L + + S D + G G I+ F S +G+ ++H + +
Sbjct: 388 KTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEY 447
Query: 64 IDFSQLQPTR----HIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYY 118
+D++ + I N A +A +LG + ED+ + V+ ++ S
Sbjct: 448 VDYNLVTDGSTEELAIQNARLAISIAR-KLGAVIFILPEDIVA--VRPRLVLHFIGSLM 503
Score = 118 bits (296), Expect = 1e-31
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 4/131 (3%)
Query: 8 DEENESSEKKSAKDALLLWCQRKTNGY-PGVNIQDFTGSWRSGLGFNALIHAHRPDLIDF 66
DE + + + LL W + +F+ G + L++ P+L
Sbjct: 143 DETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSR 202
Query: 67 SQLQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKN 126
+ LQ T + A +L + L + + K + +VA ++T ++
Sbjct: 203 APLQTTDVLQRAEQVLQNA-EKLDCRKYLTPTAMV--AGNPKLNLAFVAHLFNTHPGLEP 259
Query: 127 EMKSGRRIANV 137
+ +
Sbjct: 260 LNEEEKPEIEP 270
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 87.8 bits (217), Expect = 4e-23
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 10/116 (8%)
Query: 12 ESSEKKSAKDALLLWCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPDLIDFSQL-- 69
E K S ++ LL W I +F+ + + L++ P +
Sbjct: 3 EELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRI 62
Query: 70 ----QPTRHIDNLNNAFDVAST--ELGIPRLLDAEDVDTTRPDEKSVITYVASYYH 119
D+L A + +LG + + DV + K + +VA+ ++
Sbjct: 63 DINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADV--VSGNPKLNLAFVANLFN 116
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 77.3 bits (190), Expect = 5e-19
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 11/124 (8%)
Query: 13 SSEKKSAKDALLLWCQRK-TNGYPGVNIQDFT-GSWRSGLGFNALIHAHRPDLIDFSQ-- 68
SS D ++ W R + +IQ F + S L LI A +P I++
Sbjct: 2 SSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK 61
Query: 69 ---LQPTRHIDNLNNAFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVAS-YYHTFARM 124
L +N A + + +G ED+ K V+T A R+
Sbjct: 62 SGNLTEDDKHNNAKYAVSM-ARRIGARVYALPEDL--VEVKPKMVMTVFACLMGRGMKRV 118
Query: 125 KNEM 128
Sbjct: 119 SGPS 122
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (58), Expect = 2.2
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 26 WCQRKTNGYPGVNIQDFTGSWRSGLGFNALIHAHRPD---LIDFSQLQPTR--HIDNLNN 80
+ R YP V + + W L D + F + + L+
Sbjct: 31 FYMRTNPFYPEVELNFISVFWP-QLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHG 89
Query: 81 AFDVASTELGIPRLLDAEDVDTTRPDEKSVITYVASYYHTFARMKNEMKSG 131
+ G PR + D + + +VA+ Y + K M G
Sbjct: 90 YPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPG 140
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 137
Score = 24.9 bits (54), Expect = 5.3
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 101 DTTRPDEKSVITYVASYYHTFARMKNEMKSGRRIANVSFLTLILFSLKSGEELSVT 156
D T + V T R M S A S + +F L G+ ++V
Sbjct: 60 DVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVK 115
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila
melanogaster [TaxId: 7227]}
Length = 117
Score = 24.4 bits (53), Expect = 6.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 9 EENESSEKKSAKDALLLWCQRKTNGYPGVNIQDF 42
++ ++++ AK A+L C K YP IQ F
Sbjct: 2 DQQPAAQRTYAK-AILEVCTCKFRAYP--QIQAF 32
>d2g3aa1 d.108.1.1 (A:1-137) Probable acetyltransferase Atu2258
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 137
Score = 24.4 bits (52), Expect = 8.2
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 175 MNQIVSQMMDADKKKMMYERLNRDLLEYLPVYHARKNNLF 214
MN ++S + DA+ +K + + L L R N+
Sbjct: 1 MNFVLSDVADAEAEKAIRDPLVAYNLARFGESDKRDLNIT 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0471 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 783,641
Number of extensions: 33938
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 14
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)