BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10625
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+ K + SH +A ++E++ D DG E+ISGE+L KP GKMRVHK+ N
Sbjct: 8 QRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISN 67
Query: 86 VNKSLAFLHTK 96
VNK+L F+ +K
Sbjct: 68 VNKALDFIASK 78
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle
Alpha- Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle
Alpha- Actinin
Length = 863
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 37 SHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
SH +A ++E++ D DG E+ISGE+L KP GKMRVHK+ NVNK+L F+ +
Sbjct: 19 SHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS 78
Query: 96 K 96
K
Sbjct: 79 K 79
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+ K + SH +A ++E++ D DG E+ISGE+L KP GKMRVHK+ N
Sbjct: 13 QRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINN 72
Query: 86 VNKSLAFLHTK 96
VNK+L F+ +K
Sbjct: 73 VNKALDFIASK 83
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+ K + SH +A ++E++ D +G E+ISGE+L +P+ GKMR HK+ N
Sbjct: 6 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIAN 65
Query: 86 VNKSLAFLHTK 96
VNK+L F+ +K
Sbjct: 66 VNKALDFIASK 76
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+ K + SH +A ++E++ D +G E+ISGE+L +P+ GKMR HK+ N
Sbjct: 24 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIAN 83
Query: 86 VNKSLAFLHTK 96
VNK+L F+ +K
Sbjct: 84 VNKALDFIASK 94
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 KSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+ K + SH +A ++E++ D +G E+ISGE+L +P+ GKMR HK+ N
Sbjct: 28 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIAN 87
Query: 86 VNKSLAFLHTK 96
VNK+L F+ +K
Sbjct: 88 VNKALDFIASK 98
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 31 YPNQIYSHFQARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSL 90
+ N +S F + +E+LF DL DG E ++G+KL K G RVH + NVNK+L
Sbjct: 24 WVNAQFSKF-GKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNVNKAL 81
Query: 91 AFLH 94
L
Sbjct: 82 RVLQ 85
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 26 FKSKPYPNQIYSHF-QARMEVEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVE 84
+ K + + H +A+ + DL+ DL DG E++SG+ L + G+MR HK++
Sbjct: 73 VQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQ 131
Query: 85 NVNKSLAFL 93
NV +L +L
Sbjct: 132 NVQIALDYL 140
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 28 SKPYPNQIYSHFQARME--VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+K + H++A + + DL+ DL DG E++SG+ L + G+MR HK++N
Sbjct: 21 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQN 79
Query: 86 VNKSLAFL 93
V +L +L
Sbjct: 80 VQIALDYL 87
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse
Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse
Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse
Plectin
Length = 245
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 28 SKPYPNQIYSHFQARME--VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVEN 85
+K + H++A + + DL+ DL DG E++SG+ L + G+MR HK++N
Sbjct: 18 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQN 76
Query: 86 VNKSLAFL 93
V +L +L
Sbjct: 77 VQIALDYL 84
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue
Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue
Utrophin
Length = 226
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 45 VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH 94
+ D F DL DG E ++G L K G RVH + NVN+ L LH
Sbjct: 23 INDXFTDLKDGRKLLDLLEGLTGTSLPK-ERGSTRVHALNNVNRVLQVLH 71
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 45 VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGK--MRVHKVENVNKSLAFL 93
+ +L DL+DG E++S +K+ + +N + R ++ENV+ +L FL
Sbjct: 67 IANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 117
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 45 VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGK--MRVHKVENVNKSLAFL 93
+ +L DL+DG E++S +K+ + +N + R ++ENV+ +L FL
Sbjct: 67 IANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 117
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 45 VEDLFIDLADGXXXXXXXEIISGEKLGKPNNGK--MRVHKVENVNKSLAFL 93
+ +L DL+DG E++S +K+ + +N + R ++ENV+ +L FL
Sbjct: 64 IANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 114
>pdb|2Z04|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Atpase Subunit From Aquifex Aeolicus
pdb|2Z04|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Atpase Subunit From Aquifex Aeolicus
Length = 365
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 64 IISGEKLGKPNNGKMRVHKVENVNKSL 90
+I EKLG G+ R+ K+E+ N+ +
Sbjct: 130 VIKAEKLGYDGKGQYRIKKLEDANQVV 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,018,017
Number of Sequences: 62578
Number of extensions: 99454
Number of successful extensions: 248
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 16
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)