Query psy10625
Match_columns 104
No_of_seqs 104 out of 561
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:18:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.9 2.1E-24 4.6E-29 191.8 6.4 79 22-100 44-123 (2473)
2 cd00014 CH Calponin homology d 99.5 3.4E-14 7.3E-19 92.7 7.4 75 27-101 2-79 (107)
3 smart00033 CH Calponin homolog 99.5 6.9E-14 1.5E-18 90.3 7.0 72 28-99 2-77 (103)
4 COG5069 SAC6 Ca2+-binding acti 99.5 2.3E-14 5E-19 117.0 2.1 80 21-100 4-86 (612)
5 KOG0035|consensus 99.4 2.5E-14 5.5E-19 122.9 0.0 87 10-101 16-104 (890)
6 KOG3631|consensus 99.4 3.9E-13 8.5E-18 103.8 5.7 89 9-100 243-335 (365)
7 PF00307 CH: Calponin homology 99.3 6.5E-12 1.4E-16 81.8 5.9 73 28-100 1-80 (108)
8 KOG0046|consensus 99.1 9.9E-11 2.1E-15 96.7 6.0 74 24-98 386-465 (627)
9 KOG2046|consensus 98.2 8E-06 1.7E-10 60.3 7.3 77 24-100 23-100 (193)
10 KOG3631|consensus 98.0 1.4E-05 3.1E-10 62.3 6.2 64 10-73 74-138 (365)
11 COG5069 SAC6 Ca2+-binding acti 97.5 8.6E-05 1.9E-09 61.6 3.7 73 26-99 379-460 (612)
12 PF11971 CAMSAP_CH: CAMSAP CH 97.5 0.00027 5.8E-09 45.9 4.7 63 34-96 1-68 (85)
13 KOG0516|consensus 96.8 0.00041 8.9E-09 61.5 1.1 75 24-99 72-151 (1047)
14 KOG0046|consensus 96.8 0.00052 1.1E-08 57.5 1.5 74 25-98 118-205 (627)
15 COG5199 SCP1 Calponin [Cytoske 96.6 0.0036 7.9E-08 45.1 4.3 74 25-99 12-86 (178)
16 PF06294 DUF1042: Domain of Un 96.5 0.0058 1.3E-07 43.7 5.0 69 32-101 2-73 (158)
17 PF05622 HOOK: HOOK protein; 94.1 0.093 2E-06 45.1 5.0 67 27-95 8-81 (713)
18 KOG0518|consensus 92.6 0.0049 1.1E-07 55.0 -5.1 77 22-100 22-101 (1113)
19 KOG2996|consensus 90.3 0.49 1.1E-05 40.9 4.5 53 43-95 28-84 (865)
20 KOG0532|consensus 84.3 2.5 5.5E-05 36.6 5.4 66 33-99 583-654 (722)
21 KOG2128|consensus 79.4 3.2 7E-05 38.7 4.6 68 31-99 47-117 (1401)
22 COG5261 IQG1 Protein involved 73.6 3.7 8E-05 36.9 3.2 67 32-98 50-117 (1054)
23 PF09611 Cas_Csy1: CRISPR-asso 52.5 9.6 0.00021 31.0 1.8 38 10-47 321-370 (378)
24 PF04136 Sec34: Sec34-like fam 46.1 49 0.0011 23.4 4.4 74 23-96 37-114 (157)
25 PF03975 CheD: CheD chemotacti 35.3 27 0.00059 23.2 1.6 19 83-101 63-81 (114)
26 PF06395 CDC24: CDC24 Calponin 33.0 1.3E+02 0.0029 19.6 4.6 28 44-71 2-30 (89)
27 TIGR02564 cas_Csy1 CRISPR-asso 29.6 38 0.00082 27.8 1.9 38 10-47 318-367 (384)
28 PF14502 HTH_41: Helix-turn-he 28.6 51 0.0011 19.2 1.8 15 84-98 21-35 (48)
29 PRK13488 chemoreceptor glutami 25.1 60 0.0013 23.1 2.1 18 84-101 107-124 (157)
30 PRK13495 chemoreceptor glutami 24.3 62 0.0014 23.1 2.0 20 82-101 103-122 (159)
31 PHA00727 hypothetical protein 23.6 29 0.00063 26.4 0.2 38 24-62 78-116 (278)
32 PRK13490 chemoreceptor glutami 23.3 67 0.0015 22.9 2.0 19 83-101 111-129 (162)
33 cd01570 NAPRTase_A Nicotinate 21.9 2.5E+02 0.0055 22.1 5.2 69 27-99 204-277 (327)
34 PRK13498 chemoreceptor glutami 20.1 85 0.0018 22.6 2.0 19 83-101 114-132 (167)
No 1
>KOG0517|consensus
Probab=99.90 E-value=2.1e-24 Score=191.82 Aligned_cols=79 Identities=41% Similarity=0.645 Sum_probs=74.9
Q ss_pred hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
..+.+||||||+|||||| .+++.|.|||+||+||+.|+.|||+|||+.+|+|++|+||||++|||++||+||+...|.+
T Consensus 44 ERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhL 123 (2473)
T KOG0517|consen 44 EREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHL 123 (2473)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhccccc
Confidence 468899999999999999 8999999999999999999999999999999999999999999999999999999966643
No 2
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.53 E-value=3.4e-14 Score=92.69 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=66.1
Q ss_pred hhhchHHHHHhhcC-CCC-chhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCCCC
Q psy10625 27 KSKPYPNQIYSHFQ-ARM-EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 27 Q~ktft~WvN~~L~-~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~~~ 101 (104)
|++.+++|+|.++. ... .|+|+.++++||++|++|++.+++..++... +|..++++++|++.+++++++-||+..
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~ 79 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV 79 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee
Confidence 67889999999994 333 6999999999999999999999999987644 488999999999999999999888653
No 3
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.50 E-value=6.9e-14 Score=90.33 Aligned_cols=72 Identities=29% Similarity=0.380 Sum_probs=63.7
Q ss_pred hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC--CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN--NGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~--~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
++.+++|+|+++ +. +..|+|+.++++||+.|++|++.+++..++... .|++++++++|++.+++++++.|+.
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~ 77 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGK 77 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCe
Confidence 578999999999 44 478999999999999999999999999988522 5888999999999999999999853
No 4
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.45 E-value=2.3e-14 Score=117.01 Aligned_cols=80 Identities=29% Similarity=0.383 Sum_probs=73.6
Q ss_pred chhhhhhhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCC
Q psy10625 21 FFFLFFKSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKP 97 (104)
Q Consensus 21 ~~w~~~Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~g 97 (104)
..|+.+|+||||.|.|..| . ....+.||.+|++||+.|++||++++.+..++|+ .|.+|+|+++|++.+++|++..|
T Consensus 4 ~kwq~vq~ktftkw~nekL~s~~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~kg 83 (612)
T COG5069 4 KKWQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGKG 83 (612)
T ss_pred HHHHHHhhccchHHHhHHHhhcccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccCC
Confidence 4699999999999999999 4 3468999999999999999999999999999988 69999999999999999999999
Q ss_pred CCC
Q psy10625 98 GER 100 (104)
Q Consensus 98 i~~ 100 (104)
+.+
T Consensus 84 ~~l 86 (612)
T COG5069 84 VKL 86 (612)
T ss_pred cee
Confidence 543
No 5
>KOG0035|consensus
Probab=99.41 E-value=2.5e-14 Score=122.93 Aligned_cols=87 Identities=39% Similarity=0.573 Sum_probs=80.3
Q ss_pred ccccccCcCCcchhhhhhhhchHHHHHhhc--CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHH
Q psy10625 10 EDLFIDLADGTFFFLFFKSKPYPNQIYSHF--QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVN 87 (104)
Q Consensus 10 ~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L--~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~ 87 (104)
-.+++|++ |+++|.+|||.|+|+|| +.+..|.++..|++||+.|+.|+++++|+.++++.++++|+|+++|++
T Consensus 16 ~~~~~~~~-----~e~~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~~~~~r~hk~En~~ 90 (890)
T KOG0035|consen 16 AKFLLTPA-----WEKVQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPTRGKMRVHKLENVN 90 (890)
T ss_pred HHhhcCcc-----HHHHhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCCCCccchhhhcccc
Confidence 34778888 99999999999999999 566789999999999999999999999999999888899999999999
Q ss_pred HHHHHHhhCCCCCC
Q psy10625 88 KSLAFLHTKPGERR 101 (104)
Q Consensus 88 ~al~flk~~gi~~~ 101 (104)
.+|.|+...|+...
T Consensus 91 ~~l~~~~sk~v~~~ 104 (890)
T KOG0035|consen 91 KALVFIESKGVKLV 104 (890)
T ss_pred ceEEEecccccccc
Confidence 99999999887654
No 6
>KOG3631|consensus
Probab=99.40 E-value=3.9e-13 Score=103.85 Aligned_cols=89 Identities=22% Similarity=0.254 Sum_probs=82.5
Q ss_pred cccccccCcCCcchhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC---CCccHHHHHH
Q psy10625 9 VEDLFIDLADGTFFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN---NGKMRVHKVE 84 (104)
Q Consensus 9 ~~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~---~p~~r~~kie 84 (104)
+=|++||+|+|+ ..+.+++..++||.|| +.+..|++|.+.|.||+.|+-|+..|.|..+|-+. .|.+--+++.
T Consensus 243 aFDtLFd~aPdK---ln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~ 319 (365)
T KOG3631|consen 243 AFDTLFDHAPDK---LNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVH 319 (365)
T ss_pred hHHHHHhhCcHH---HHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHH
Confidence 457999999988 8999999999999999 99999999999999999999999999999998643 7999999999
Q ss_pred hHHHHHHHHhhCCCCC
Q psy10625 85 NVNKSLAFLHTKPGER 100 (104)
Q Consensus 85 Nv~~al~flk~~gi~~ 100 (104)
||++||++|++.|..-
T Consensus 320 NVsfAfeLm~D~GL~k 335 (365)
T KOG3631|consen 320 NVSFAFELMKDGGLEK 335 (365)
T ss_pred HHHHHHHHHHccCcCC
Confidence 9999999999988753
No 7
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.29 E-value=6.5e-12 Score=81.80 Aligned_cols=73 Identities=25% Similarity=0.200 Sum_probs=61.5
Q ss_pred hhchHHHHHhhc-CC--CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC-CCC--ccHHHHHHhHHHHHHHHhh-CCCCC
Q psy10625 28 SKPYPNQIYSHF-QA--RMEVEDLFIDLADGKKLLKLLEIISGEKLGKP-NNG--KMRVHKVENVNKSLAFLHT-KPGER 100 (104)
Q Consensus 28 ~ktft~WvN~~L-~~--~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~-~~p--~~r~~kieNv~~al~flk~-~gi~~ 100 (104)
++.+.+|+|+++ +. +..|.|+.+||+||++|+.|++.+.+..++.. .+| ++.+++++|++.|++++++ -|+..
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 467899999999 44 56899999999999999999999999987521 122 3899999999999999999 77764
No 8
>KOG0046|consensus
Probab=99.12 E-value=9.9e-11 Score=96.65 Aligned_cols=74 Identities=27% Similarity=0.257 Sum_probs=63.1
Q ss_pred hhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC--CCCC----ccHHHHHHhHHHHHHHHhhCC
Q psy10625 24 LFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGK--PNNG----KMRVHKVENVNKSLAFLHTKP 97 (104)
Q Consensus 24 ~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~--~~~p----~~r~~kieNv~~al~flk~~g 97 (104)
.....|+|+.|+|+ |+..++|+++|+|++||.+|.++++.++...+.. .++| ++.+.++|||++|++.+++.+
T Consensus 386 ~~reer~fr~WmNS-lgv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~ 464 (627)
T KOG0046|consen 386 ESREERTFRLWMNS-LGVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLK 464 (627)
T ss_pred HHHHHHHHHHHHHh-cCCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcc
Confidence 56678999999999 9999999999999999999999999999877642 2232 456999999999999998854
Q ss_pred C
Q psy10625 98 G 98 (104)
Q Consensus 98 i 98 (104)
.
T Consensus 465 F 465 (627)
T KOG0046|consen 465 F 465 (627)
T ss_pred e
Confidence 3
No 9
>KOG2046|consensus
Probab=98.18 E-value=8e-06 Score=60.34 Aligned_cols=77 Identities=19% Similarity=0.055 Sum_probs=62.8
Q ss_pred hhhhhhchHHHHHhhcCCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 24 LFFKSKPYPNQIYSHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 24 ~~~Q~ktft~WvN~~L~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
.....+-.+.||-..+..+ ..=.|+.+-|+||++||.|+..|.+..+++.+.|++-++++||++.=++++++-|++-
T Consensus 23 ~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~ 100 (193)
T KOG2046|consen 23 DDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFIKAAKKYGVPE 100 (193)
T ss_pred CHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHHHHHHhcCCCh
Confidence 4445666889998854333 2346899999999999999999999666665589999999999999999999988864
No 10
>KOG3631|consensus
Probab=98.02 E-value=1.4e-05 Score=62.31 Aligned_cols=64 Identities=25% Similarity=0.182 Sum_probs=57.8
Q ss_pred ccccccCcCCcchhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC
Q psy10625 10 EDLFIDLADGTFFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP 73 (104)
Q Consensus 10 ~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~ 73 (104)
.++|+||.+..++...--.+....|+|.-| ...+.|.+|.+||-||.+|-.|+|.|++.++.-.
T Consensus 74 ~r~yl~p~sr~DpK~~el~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~klev~ 138 (365)
T KOG3631|consen 74 KRTYLDPTSRKDPKFEELVKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLEVA 138 (365)
T ss_pred ceeccCCccccChhHHHHHHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhccch
Confidence 468999999988877777899999999999 7778999999999999999999999999998653
No 11
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=97.53 E-value=8.6e-05 Score=61.65 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=58.4
Q ss_pred hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHc-CCcCCC--CC-CC-----ccHHHHHHhHHHHHHHHhhC
Q psy10625 26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIIS-GEKLGK--PN-NG-----KMRVHKVENVNKSLAFLHTK 96 (104)
Q Consensus 26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls-~~~l~~--~~-~p-----~~r~~kieNv~~al~flk~~ 96 (104)
...+.||-|.|+ +...++|+|++.|++||..+++.++..- .-.+.. .. .| -+|+.+++|+++|.+|....
T Consensus 379 fear~~Tf~l~~-~~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~nyavdlG~~~ 457 (612)
T COG5069 379 FEARVFTFWLNS-LDVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENYAVDLGITE 457 (612)
T ss_pred HHHHHHHHHHHH-hcCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccchhhhhhhhc
Confidence 346789999999 6677889999999999999999998766 333321 11 23 47999999999999999998
Q ss_pred CCC
Q psy10625 97 PGE 99 (104)
Q Consensus 97 gi~ 99 (104)
|+.
T Consensus 458 gf~ 460 (612)
T COG5069 458 GFS 460 (612)
T ss_pred Cee
Confidence 765
No 12
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.46 E-value=0.00027 Score=45.91 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=51.4
Q ss_pred HHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC--CC-CCc-cHHHHHHhHHHHHHHHhhC
Q psy10625 34 QIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGK--PN-NGK-MRVHKVENVNKSLAFLHTK 96 (104)
Q Consensus 34 WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~--~~-~p~-~r~~kieNv~~al~flk~~ 96 (104)
|+|..- ....+|.|+..||+||..|++|+.-+-...++. +. ++. +....+.|+....+|..+.
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~ 68 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSH 68 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHH
Confidence 555544 445789999999999999999999999998874 33 454 5779999999999998874
No 13
>KOG0516|consensus
Probab=96.84 E-value=0.00041 Score=61.53 Aligned_cols=75 Identities=28% Similarity=0.403 Sum_probs=59.1
Q ss_pred hhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC---CCC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625 24 LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLG---KPN-NGKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 24 ~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~---~~~-~p~~r~~kieNv~~al~flk~~gi 98 (104)
..+|+++|+.|++.++ +.-.+|.++++++.+ ...+.++++.++.... .+. .+..+++.++|+..++.+++...+
T Consensus 72 ~~~~k~~f~~~~~~~l~~~~~~ve~~~~~l~~-~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~~~ 150 (1047)
T KOG0516|consen 72 DLVQKKLFPDWLAKELEKVMKHVEDLYEDLRD-LNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKEDLA 150 (1047)
T ss_pred HHHHHhccchhhHHHHHHhccchhHHhhhhhh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHHHH
Confidence 5899999999999999 778899999999996 5566666655554433 222 466789999999999999998654
Q ss_pred C
Q psy10625 99 E 99 (104)
Q Consensus 99 ~ 99 (104)
.
T Consensus 151 e 151 (1047)
T KOG0516|consen 151 E 151 (1047)
T ss_pred H
Confidence 3
No 14
>KOG0046|consensus
Probab=96.82 E-value=0.00052 Score=57.52 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=57.4
Q ss_pred hhhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC-C-CC--CCccHHHHHHhHHHHH
Q psy10625 25 FFKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLG-K-PN--NGKMRVHKVENVNKSL 90 (104)
Q Consensus 25 ~~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-~-~~--~p~~r~~kieNv~~al 90 (104)
+-.+..|.+|||++| .. ++.-.+||...+||+.|+.|+..--..++. | .+ ++-+.+++.||.+.||
T Consensus 118 eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~l 197 (627)
T KOG0046|consen 118 EEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNLAL 197 (627)
T ss_pred HHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhhHH
Confidence 445788999999999 32 123468999999999999999876677764 3 23 4557899999999999
Q ss_pred HHHhhCCC
Q psy10625 91 AFLHTKPG 98 (104)
Q Consensus 91 ~flk~~gi 98 (104)
.--+.-|.
T Consensus 198 nSAkAiGc 205 (627)
T KOG0046|consen 198 NSAKAIGC 205 (627)
T ss_pred hhcccccc
Confidence 87776553
No 15
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=96.60 E-value=0.0036 Score=45.13 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=58.0
Q ss_pred hhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 25 FFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 25 ~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
..|.+..+-||-.-| +.=.+=.||.+-|+||++||.+|...++..+. |.-.++-+-.++|++.-++|+++-+|+
T Consensus 12 ~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~-yKeSkmpFVQmenIs~Fin~~~k~~vp 86 (178)
T COG5199 12 DKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIK-YKESKMPFVQMENISSFINGLKKLRVP 86 (178)
T ss_pred HHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccce-ecccCCceeeHHHHHHHHHHHHHhCCC
Confidence 456778899999988 32234579999999999999988766655543 344677888899999999999987753
No 16
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=96.53 E-value=0.0058 Score=43.67 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCCCccHHHHHHhHHHH-HHHHhhCCCCCC
Q psy10625 32 PNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNNGKMRVHKVENVNKS-LAFLHTKPGERR 101 (104)
Q Consensus 32 t~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~p~~r~~kieNv~~a-l~flk~~gi~~~ 101 (104)
.+|+++ |....++.++..||+||+.+++++...-.+.+. .|..+.+...|+.|=+.- ..+++.-|+.+.
T Consensus 2 ~~WL~~-l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~ 73 (158)
T PF06294_consen 2 LKWLQS-LDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIKLD 73 (158)
T ss_dssp HHHHHH-S--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT----
T ss_pred hHHHhc-CCCCCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 479999 755667889999999999999999999988765 355678888999999988 899988887654
No 17
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.14 E-value=0.093 Score=45.08 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=43.7
Q ss_pred hhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC-----CCC-C-CccHHHHHHhHHHHHHHHhh
Q psy10625 27 KSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG-----KPN-N-GKMRVHKVENVNKSLAFLHT 95 (104)
Q Consensus 27 Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-----~~~-~-p~~r~~kieNv~~al~flk~ 95 (104)
-..++..|+|+ +..+.++.+ +.||.||+.|..+|..|.+..+. +.. . +.+..-++.|+...++-|..
T Consensus 8 l~~~Lv~Wv~t-f~~~~~~~~-~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 81 (713)
T PF05622_consen 8 LCDSLVTWVQT-FNLSAPCSS-YEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKS 81 (713)
T ss_dssp HHHHHHHHHTT----SS---S-HHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCCcCC-HHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 45678999999 755555655 78999999999999999988664 222 1 23455588888888876654
No 18
>KOG0518|consensus
Probab=92.61 E-value=0.0049 Score=55.01 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=61.0
Q ss_pred hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-C-CccHHHHHHhHHHHHHHHhhCCC
Q psy10625 22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-N-GKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~-p~~r~~kieNv~~al~flk~~gi 98 (104)
+|.-++-..+|.|+-.+. ..+..+.+|..|+.||.+|+.++++++.....+.. + |. +|+.+|++.|+.+...+++
T Consensus 22 e~~i~~~~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~~~~~skv~~~~p~--~q~~~~v~~a~~~ft~d~r 99 (1113)
T KOG0518|consen 22 EVKIQDNLDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLSAVDTSKVKKKGPG--IQGLHNVREALNKFTVDNR 99 (1113)
T ss_pred eeEEEecCCceEEEEEccccCcceeEEEEecCccccccceeeEEeeccccceeEEecCC--ccCcchhhhhhhhhhhccc
Confidence 355666666666666655 66788899999999999999999999998777644 3 44 8999999999999888764
Q ss_pred CC
Q psy10625 99 ER 100 (104)
Q Consensus 99 ~~ 100 (104)
..
T Consensus 100 ~~ 101 (1113)
T KOG0518|consen 100 KE 101 (1113)
T ss_pred ee
Confidence 43
No 19
>KOG2996|consensus
Probab=90.27 E-value=0.49 Score=40.89 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=44.1
Q ss_pred CchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCc-cHHHHHHhHHHHHHHHhh
Q psy10625 43 MEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGK-MRVHKVENVNKSLAFLHT 95 (104)
Q Consensus 43 ~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~-~r~~kieNv~~al~flk~ 95 (104)
..|-||...|+||+.|++|+.-|..-.+. ..+ +|. +.|-++.|++.-+.|+.+
T Consensus 28 a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~ 84 (865)
T KOG2996|consen 28 AQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE 84 (865)
T ss_pred chHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH
Confidence 46889999999999999999999988775 234 676 478899999998888775
No 20
>KOG0532|consensus
Probab=84.34 E-value=2.5 Score=36.63 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=50.6
Q ss_pred HHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-----CCcc-HHHHHHhHHHHHHHHhhCCCC
Q psy10625 33 NQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-----NGKM-RVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 33 ~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-----~p~~-r~~kieNv~~al~flk~~gi~ 99 (104)
+-+-..|+...++ ||-..|.||++|++|..-+-...|+..+ -|++ ...+--||..-|+++..-||.
T Consensus 583 k~iEtRLk~sLp~-Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVp 654 (722)
T KOG0532|consen 583 KLIETRLKVSLPE-DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVP 654 (722)
T ss_pred HHHHHHhcccCch-hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCC
Confidence 3444555655555 9999999999999999999998876432 3443 558889999999999888874
No 21
>KOG2128|consensus
Probab=79.44 E-value=3.2 Score=38.72 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=54.7
Q ss_pred hHHHHHhhcCCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCC-CCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 31 YPNQIYSHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLG-KPN-NGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 31 ft~WvN~~L~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-~~~-~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
-.+|+-.-|... ++-++|...|++|+.|+.|-+.++..... +|. ++.. +.+-.|++.=+++|..-|+.
T Consensus 47 ~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-frHtdNi~q~~~~me~iglP 117 (1401)
T KOG2128|consen 47 AKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-FRHTDNINQWLRAMESIGLP 117 (1401)
T ss_pred HHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-eecchhHHHHHHHHhhcCCC
Confidence 458999988433 56789999999999999999999986543 444 3444 88999999999999987763
No 22
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=73.58 E-value=3.7 Score=36.93 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=54.2
Q ss_pred HHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCC-CCCccHHHHHHhHHHHHHHHhhCCC
Q psy10625 32 PNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP-NNGKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 32 t~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~-~~p~~r~~kieNv~~al~flk~~gi 98 (104)
..|+-..+....+-.-+.+.|++|+.|+.|.+.+....+... .--++.+.+-.|+|+-|+++..-|+
T Consensus 50 K~WIee~~~~~l~~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGl 117 (1054)
T COG5261 50 KIWIEEVIEEALPELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGL 117 (1054)
T ss_pred HHHHHHHhccCCchhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCC
Confidence 479998775555566688899999999999999999877642 2356778889999999999987775
No 23
>PF09611 Cas_Csy1: CRISPR-associated protein (Cas_Csy1); InterPro: IPR013397 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=52.50 E-value=9.6 Score=30.96 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=27.4
Q ss_pred ccccccCcC-----------CcchhhhhhhhchHHHHHhhc-CCCCchhh
Q psy10625 10 EDLFIDLAD-----------GTFFFLFFKSKPYPNQIYSHF-QARMEVED 47 (104)
Q Consensus 10 ~~~~~d~~~-----------~~~~w~~~Q~ktft~WvN~~L-~~~~~V~d 47 (104)
+.+.+||.. +..+|...-.+.|.+|+|..| +....+.|
T Consensus 321 qklWLDP~r~~~d~~f~~er~~~dW~~~i~~~Fa~Wln~~l~~~~~~~gd 370 (378)
T PF09611_consen 321 QKLWLDPWRAEDDEEFKQEREKGDWQDEIAKDFARWLNAQLKKKKLDFGD 370 (378)
T ss_pred HHHhCCcccccchHHHHHHhhhCchHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 346677764 444799999999999999999 43344444
No 24
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=46.06 E-value=49 Score=23.35 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=49.3
Q ss_pred hhhhhhhc--hHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCc-CCCCC-CCccHHHHHHhHHHHHHHHhhC
Q psy10625 23 FLFFKSKP--YPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEK-LGKPN-NGKMRVHKVENVNKSLAFLHTK 96 (104)
Q Consensus 23 w~~~Q~kt--ft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~-l~~~~-~p~~r~~kieNv~~al~flk~~ 96 (104)
|..|..+| |..=++.-+........+.+++..-+....-||.++..- -|... ....-...+.++..||.||.++
T Consensus 37 ~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h 114 (157)
T PF04136_consen 37 YNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEH 114 (157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 45555444 777777744555667888888888888888888766432 11111 2222357899999999999873
No 25
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=35.25 E-value=27 Score=23.21 Aligned_cols=19 Identities=16% Similarity=0.010 Sum_probs=15.2
Q ss_pred HHhHHHHHHHHhhCCCCCC
Q psy10625 83 VENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 83 ieNv~~al~flk~~gi~~~ 101 (104)
-.|+..|.++|++.||.+.
T Consensus 63 ~rNv~~a~~~L~~~gi~I~ 81 (114)
T PF03975_consen 63 ERNVEAARELLAEEGIPIV 81 (114)
T ss_dssp HHHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHHHCCCcEE
Confidence 5799999999999999764
No 26
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=33.04 E-value=1.3e+02 Score=19.56 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.5
Q ss_pred chhhHHhhhhhHHHHHHHHHHHcCC-cCC
Q psy10625 44 EVEDLFIDLADGKKLLKLLEIISGE-KLG 71 (104)
Q Consensus 44 ~V~dl~~Dl~DG~~Li~LLe~Ls~~-~l~ 71 (104)
+|+.|+.=|+.|.-|+.|...+..+ .++
T Consensus 2 PVt~LW~~fr~G~PLc~lfNal~p~~~L~ 30 (89)
T PF06395_consen 2 PVTQLWKLFRQGYPLCVLFNALQPEEPLP 30 (89)
T ss_pred cHHHHHHHHhCcCcHHHHHHccCCccCCC
Confidence 6889999999999999999999875 444
No 27
>TIGR02564 cas_Csy1 CRISPR-associated protein, Csy1 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=29.60 E-value=38 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.7
Q ss_pred ccccccCc-----------CCcchhhhhhhhchHHHHHhhc-CCCCchhh
Q psy10625 10 EDLFIDLA-----------DGTFFFLFFKSKPYPNQIYSHF-QARMEVED 47 (104)
Q Consensus 10 ~~~~~d~~-----------~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~d 47 (104)
+.+.+||. .+..+|.....+.|.+|+|..| +....+.|
T Consensus 318 qqlWLDP~R~~~d~~F~~eR~~~DW~~~v~~~Fa~WLn~~L~~~~~~~gd 367 (384)
T TIGR02564 318 EQYWLDPKRADLDEVFKAEREKGDWDQEVEKDFARWLNKRLQHDRLEFGD 367 (384)
T ss_pred HHhcCCcccccchHHHHHHHhhCchHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 44677873 2234799999999999999999 43333343
No 28
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.61 E-value=51 Score=19.19 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=11.3
Q ss_pred HhHHHHHHHHhhCCC
Q psy10625 84 ENVNKSLAFLHTKPG 98 (104)
Q Consensus 84 eNv~~al~flk~~gi 98 (104)
--|+.||+||++.|.
T Consensus 21 GtiQ~Alk~Le~~ga 35 (48)
T PF14502_consen 21 GTIQNALKFLEENGA 35 (48)
T ss_pred hHHHHHHHHHHHCCc
Confidence 457788999988764
No 29
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=25.12 E-value=60 Score=23.08 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=16.6
Q ss_pred HhHHHHHHHHhhCCCCCC
Q psy10625 84 ENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 84 eNv~~al~flk~~gi~~~ 101 (104)
.|+..|.++|++.||.+.
T Consensus 107 rNi~~a~~~L~~~gi~i~ 124 (157)
T PRK13488 107 RNIESAKETLKKLGIRIV 124 (157)
T ss_pred HHHHHHHHHHHHCCCcEE
Confidence 899999999999999864
No 30
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.33 E-value=62 Score=23.10 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHhhCCCCCC
Q psy10625 82 KVENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 82 kieNv~~al~flk~~gi~~~ 101 (104)
=-.|+..|.++|++.||.+.
T Consensus 103 G~rNi~~a~~~L~~~gI~i~ 122 (159)
T PRK13495 103 GARNVEAVKKHLKDFGIKLV 122 (159)
T ss_pred HHHHHHHHHHHHHHcCCcEE
Confidence 35799999999999999864
No 31
>PHA00727 hypothetical protein
Probab=23.59 E-value=29 Score=26.42 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=26.4
Q ss_pred hhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHH
Q psy10625 24 LFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLL 62 (104)
Q Consensus 24 ~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LL 62 (104)
..++.+.-.+|+|+.| .....| -....=+||.-|+-|-
T Consensus 78 vdv~vkv~kkwinsrlftaehyv-amlqqs~dglqllflr 116 (278)
T PHA00727 78 VDVRVKVVKKWINSRLFTAEHYV-AMLQQSKDGLQLLFLR 116 (278)
T ss_pred cceeeehhHHHHhhhhccHHHHH-HHHHhcccchhhhhhH
Confidence 4556777889999999 444444 4455668998876554
No 32
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.26 E-value=67 Score=22.95 Aligned_cols=19 Identities=11% Similarity=-0.251 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHhhCCCCCC
Q psy10625 83 VENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 83 ieNv~~al~flk~~gi~~~ 101 (104)
-.|+..|.++|++.||.+.
T Consensus 111 ~rNv~~a~~~L~~~gI~i~ 129 (162)
T PRK13490 111 NRNGKAVKKKLKELSIPIL 129 (162)
T ss_pred HHHHHHHHHHHHHcCCcEE
Confidence 3599999999999999864
No 33
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=21.92 E-value=2.5e+02 Score=22.06 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=43.5
Q ss_pred hhhchHHHHHhhcCCCCchhhHHhhhhhHH-HHHHHHHHHc--CCcC-C-CCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 27 KSKPYPNQIYSHFQARMEVEDLFIDLADGK-KLLKLLEIIS--GEKL-G-KPNNGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 27 Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~-~Li~LLe~Ls--~~~l-~-~~~~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
+..+|.+|++.+-.....+.|-+.+.++|+ ..+...+.+. |..+ + |+..+.. .+.+..+.+.+.+.|++
T Consensus 204 e~~A~~~~~~~~p~~~i~L~Dtyd~~~~~~~~~l~~~~~l~~~~~~~~gvR~DSGd~----~~~~~~~r~~l~~~G~~ 277 (327)
T cd01570 204 ELAAFRAFAEAYPDNFTLLVDTYDTLRSGLPNAIAVAKELGALGYRLVGVRIDSGDL----AYLSKEARKMLDEAGLT 277 (327)
T ss_pred HHHHHHHHHHHCCCCcEEEEEcccchhhhHHHHHHHHHHHHhhCCCceEEEeCCCCH----HHHHHHHHHHHHHCCCC
Confidence 568899999885443355678887776666 3556666554 3443 2 4333322 56667777777777763
No 34
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.12 E-value=85 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=17.0
Q ss_pred HHhHHHHHHHHhhCCCCCC
Q psy10625 83 VENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 83 ieNv~~al~flk~~gi~~~ 101 (104)
-.|+..|.++|++.||.+.
T Consensus 114 ~rNi~~a~~~L~~~gi~i~ 132 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLK 132 (167)
T ss_pred HHHHHHHHHHHHHCCCcEE
Confidence 4799999999999999864
Done!