Query psy10625
Match_columns 104
No_of_seqs 104 out of 561
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:19:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vzc_A Alpha-parvin; membrane, 99.9 7E-27 2.4E-31 161.2 4.4 90 9-101 8-101 (131)
2 4b7l_A Filamin-B; structural p 99.9 4.2E-25 1.5E-29 172.3 6.3 80 22-101 13-95 (347)
3 3hoc_A Filamin-A; calponin hom 99.9 1.3E-24 4.5E-29 165.2 6.8 79 23-101 44-125 (272)
4 2yrn_A Neuron navigator 2 isof 99.9 8.6E-24 2.9E-28 144.7 5.5 81 21-101 13-97 (129)
5 3f7p_A Plectin-1; plakin, hemi 99.9 1.8E-22 6.3E-27 155.1 6.4 80 21-101 68-148 (296)
6 1wku_A Alpha-actinin 3; calpon 99.9 2.1E-22 7.2E-27 151.1 6.5 79 23-101 24-103 (254)
7 2wa7_A Filamin-B; disease muta 99.9 3.7E-22 1.3E-26 148.8 6.8 80 22-101 16-98 (245)
8 1sh5_A Plectin 1, PLTN, PCN; a 99.8 3.7E-21 1.3E-25 143.1 7.0 80 21-101 7-92 (245)
9 1dxx_A Dystrophin; structural 99.8 5.7E-21 1.9E-25 142.4 6.5 82 19-101 9-92 (246)
10 1sjj_A Actinin; 3-helix bundle 99.8 1.7E-20 5.7E-25 157.1 5.2 79 22-100 4-83 (863)
11 1aoa_A T-fimbrin; actin-bindin 99.8 1.2E-18 4E-23 131.5 8.3 81 21-101 19-112 (275)
12 1pxy_A Fimbrin-like protein; c 99.7 1.8E-18 6.1E-23 139.8 7.3 79 22-101 272-354 (506)
13 1rt8_A Fimbrin; filamentous ac 99.6 4.6E-16 1.6E-20 126.0 7.4 75 25-101 284-367 (513)
14 1rt8_A Fimbrin; filamentous ac 99.6 6.1E-16 2.1E-20 125.2 6.3 79 20-98 6-101 (513)
15 1pxy_A Fimbrin-like protein; c 99.6 1.9E-15 6.4E-20 122.1 7.0 80 22-101 3-96 (506)
16 1wjo_A T-plastin; CH domain, a 99.0 7.1E-10 2.4E-14 75.7 6.8 76 25-100 6-88 (124)
17 1wyp_A Calponin 1; CH domain, 98.9 2.2E-09 7.5E-14 73.9 7.3 76 23-99 14-89 (136)
18 1h67_A Calponin alpha; cytoske 98.9 1E-09 3.6E-14 72.7 5.5 71 28-99 5-75 (108)
19 1wyn_A Calponin-2; CH domain, 98.9 2.6E-09 8.9E-14 74.3 7.2 76 23-99 14-89 (146)
20 1wym_A Transgelin-2; CH domain 98.9 6.6E-09 2.3E-13 72.9 7.7 78 23-100 14-99 (155)
21 1wyr_A RHO guanine nucleotide 98.8 1.7E-08 5.8E-13 68.2 7.4 71 29-99 9-87 (121)
22 1ujo_A Transgelin; CH domain, 98.8 1E-08 3.4E-13 71.2 6.4 77 23-99 6-91 (144)
23 1p5s_A RAS GTPase-activating-l 98.7 4.1E-08 1.4E-12 71.6 6.2 73 28-100 57-131 (203)
24 2l3g_A RHO guanine nucleotide 98.6 2.4E-07 8.1E-12 63.1 8.4 71 28-98 14-93 (126)
25 1p2x_A RNG2 protein, RAS GTPas 98.5 2.2E-07 7.7E-12 65.3 6.6 71 29-99 14-86 (159)
26 2rr8_A Iqgap1 protein; F-actin 98.2 8.2E-07 2.8E-11 64.0 4.3 77 23-100 23-110 (190)
27 3i6x_A P195, RAS GTPase-activa 98.2 7.6E-07 2.6E-11 64.5 4.0 70 30-99 51-131 (193)
28 2qjz_A Microtubule-associated 98.2 4.9E-06 1.7E-10 56.5 6.8 69 28-100 7-79 (123)
29 1wyo_A Protein EB3, microtubul 98.1 6.9E-06 2.4E-10 58.1 6.8 72 25-100 21-96 (159)
30 1aoa_A T-fimbrin; actin-bindin 97.9 7.4E-06 2.5E-10 61.3 3.7 72 28-99 170-250 (275)
31 1wyl_A NEDD9 interacting prote 97.8 2.6E-05 9E-10 51.9 4.6 70 28-99 9-81 (116)
32 2d89_A EHBP1 protein; all alph 97.8 1.6E-05 5.4E-10 53.3 3.3 69 28-99 11-82 (119)
33 2d88_A Protein mical-3; all al 97.8 4.2E-05 1.4E-09 51.3 5.3 69 28-99 11-83 (121)
34 2d87_A Smoothelin splice isofo 97.7 2.9E-05 9.9E-10 52.7 4.1 68 28-98 9-80 (128)
35 2wa7_A Filamin-B; disease muta 97.6 4.6E-05 1.6E-09 56.2 4.4 71 27-99 144-215 (245)
36 1bkr_A Spectrin beta chain; fi 97.6 3.8E-05 1.3E-09 50.6 3.3 69 28-99 5-77 (109)
37 1wyq_A Spectrin beta chain, br 97.5 5.3E-05 1.8E-09 51.3 3.0 69 28-99 9-81 (127)
38 3hoc_A Filamin-A; calponin hom 97.5 7.9E-05 2.7E-09 56.2 3.7 70 26-99 170-242 (272)
39 1bhd_A Utrophin; calponin homo 97.4 3.5E-05 1.2E-09 51.5 1.2 70 28-99 10-82 (118)
40 1sh5_A Plectin 1, PLTN, PCN; a 97.4 3.9E-05 1.3E-09 56.4 1.0 71 27-99 134-207 (245)
41 4b7l_A Filamin-B; structural p 97.3 0.00025 8.5E-09 55.0 4.4 70 26-99 140-212 (347)
42 1dxx_A Dystrophin; structural 97.3 7E-05 2.4E-09 55.2 1.3 69 28-99 137-210 (246)
43 3f7p_A Plectin-1; plakin, hemi 97.3 0.00013 4.5E-09 55.7 2.8 70 27-99 190-263 (296)
44 1wku_A Alpha-actinin 3; calpon 97.2 0.00025 8.4E-09 52.6 4.1 70 27-99 141-214 (254)
45 3ky9_A Proto-oncogene VAV; cal 97.1 0.0012 4.1E-08 53.6 7.0 69 31-99 10-92 (587)
46 2ee7_A Sperm flagellar protein 97.0 0.002 6.8E-08 43.8 6.6 77 25-102 14-93 (127)
47 2qjx_A Protein BIM1; calponin 96.3 0.016 5.3E-07 39.4 7.1 67 28-99 12-82 (127)
48 2r8u_A Microtubule-associated 96.0 0.024 8.3E-07 42.8 7.4 70 28-100 17-89 (268)
49 4abo_I MAL3, microtubule integ 96.0 0.023 7.9E-07 39.4 6.7 68 29-100 9-79 (145)
50 1sjj_A Actinin; 3-helix bundle 95.9 0.0012 4E-08 55.3 -0.2 69 28-99 123-195 (863)
51 1wix_A HOOK homolog 1, RSGI RU 95.6 0.025 8.5E-07 39.6 5.6 68 26-95 9-83 (164)
52 2dna_A Unnamed protein product 27.5 46 0.0016 19.7 2.5 21 83-103 45-65 (67)
53 3fsi_A RT, reverse transcripta 24.8 60 0.0021 22.8 3.2 29 76-104 207-235 (255)
54 2f9z_C Protein (chemotaxis met 20.2 55 0.0019 22.4 2.1 19 83-101 104-122 (159)
No 1
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=99.93 E-value=7e-27 Score=161.21 Aligned_cols=90 Identities=22% Similarity=0.194 Sum_probs=78.8
Q ss_pred cccccccCcCCcchhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHH
Q psy10625 9 VEDLFIDLADGTFFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVE 84 (104)
Q Consensus 9 ~~~~~~d~~~~~~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kie 84 (104)
+-+.++|.++ +|+.+|++|||+|+|+|| +.+.+|+||++||+||+.|+.|+|+|+|+++| +++ +|++|+|++|
T Consensus 8 ~~~~l~~~~~---e~~~~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kie 84 (131)
T 2vzc_A 8 AFDTLFDHAP---DKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVL 84 (131)
T ss_dssp HHHHHHHHCH---HHHHHHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHH
T ss_pred HHHHHHhcch---HHHHHHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHH
Confidence 3345666664 357899999999999999 77889999999999999999999999999887 445 6999999999
Q ss_pred hHHHHHHHHhhCCCCCC
Q psy10625 85 NVNKSLAFLHTKPGERR 101 (104)
Q Consensus 85 Nv~~al~flk~~gi~~~ 101 (104)
||+.||+|+++.|+++.
T Consensus 85 Nv~~aL~~lk~~gi~l~ 101 (131)
T 2vzc_A 85 NVSFAFELMQDGGLEKP 101 (131)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCCcC
Confidence 99999999999999764
No 2
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=99.91 E-value=4.2e-25 Score=172.30 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=74.8
Q ss_pred hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCC-CC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625 22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGK-PN-NGKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~-~~-~p~~r~~kieNv~~al~flk~~gi 98 (104)
+|+++|+||||+|||+|| +.+.+|+||++||+||++|++|+|+|+|+++++ +. +|++|+|+++||+.||+|+++.|+
T Consensus 13 ~we~iQ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~ 92 (347)
T 4b7l_A 13 PWKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESI 92 (347)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 499999999999999999 778899999999999999999999999999975 44 799999999999999999999998
Q ss_pred CCC
Q psy10625 99 ERR 101 (104)
Q Consensus 99 ~~~ 101 (104)
++.
T Consensus 93 ~lv 95 (347)
T 4b7l_A 93 KLV 95 (347)
T ss_dssp CCS
T ss_pred ccC
Confidence 864
No 3
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=99.90 E-value=1.3e-24 Score=165.21 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=74.2
Q ss_pred hhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcC-CCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 23 FLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKL-GKPN-NGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l-~~~~-~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
|+.+|+||||+|||+|| +.+..|+||++||+||++|+.|+|+|+|.++ ++++ +|++|+|+++||+.||+|+++.|++
T Consensus 44 w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~ 123 (272)
T 3hoc_A 44 WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIK 123 (272)
T ss_dssp GGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999 7778999999999999999999999999999 6665 6899999999999999999999987
Q ss_pred CC
Q psy10625 100 RR 101 (104)
Q Consensus 100 ~~ 101 (104)
+.
T Consensus 124 lv 125 (272)
T 3hoc_A 124 LV 125 (272)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 4
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=8.6e-24 Score=144.69 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=73.9
Q ss_pred chhhhhhhhchHHHHHhhc-CCCC--chhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhC
Q psy10625 21 FFFLFFKSKPYPNQIYSHF-QARM--EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTK 96 (104)
Q Consensus 21 ~~w~~~Q~ktft~WvN~~L-~~~~--~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~ 96 (104)
.+|+..|+++||+|||++| +.+. .|.||++||+||++|+.|+|+|++.++++++ +|++|+|++|||+.||+|+++.
T Consensus 13 ~~~~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~~ 92 (129)
T 2yrn_A 13 IHGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAK 92 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999 5544 5999999999999999999999999999877 6899999999999999999998
Q ss_pred CCCCC
Q psy10625 97 PGERR 101 (104)
Q Consensus 97 gi~~~ 101 (104)
|+++.
T Consensus 93 gv~~~ 97 (129)
T 2yrn_A 93 GINIQ 97 (129)
T ss_dssp TCCCT
T ss_pred CCccc
Confidence 88753
No 5
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=155.05 Aligned_cols=80 Identities=31% Similarity=0.537 Sum_probs=74.8
Q ss_pred chhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 21 FFFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 21 ~~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
.+|+.+|+++||+|||++| +.+..|+||++||+||++|++|+|+|++.++++ .+|++|+|++|||+.||+|+++.|++
T Consensus 68 ~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~-~~~~~r~~kleNvn~aL~~lk~~gv~ 146 (296)
T 3f7p_A 68 DERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHRQVK 146 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc-cCCcChhhhhhhHHHHHHHHHHhCcc
Confidence 4699999999999999999 777889999999999999999999999999998 57899999999999999999999987
Q ss_pred CC
Q psy10625 100 RR 101 (104)
Q Consensus 100 ~~ 101 (104)
+.
T Consensus 147 lv 148 (296)
T 3f7p_A 147 LV 148 (296)
T ss_dssp CT
T ss_pred cc
Confidence 63
No 6
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=99.86 E-value=2.1e-22 Score=151.08 Aligned_cols=79 Identities=39% Similarity=0.611 Sum_probs=75.1
Q ss_pred hhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCCC
Q psy10625 23 FLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~~ 101 (104)
|+.+|+++||+|||++| +.+..|+||++||+||++|++|+|+|++.+++++++|++|+|++|||+.||+|+++.|+++.
T Consensus 24 ~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k~~gv~lv 103 (254)
T 1wku_A 24 WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLV 103 (254)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred chHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHHHcCCCcc
Confidence 99999999999999999 77788999999999999999999999999999977899999999999999999999998753
No 7
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=99.86 E-value=3.7e-22 Score=148.82 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=74.0
Q ss_pred hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcC-CCCC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625 22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKL-GKPN-NGKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l-~~~~-~p~~r~~kieNv~~al~flk~~gi 98 (104)
.|+.+|+++||+|||++| +.+..|+||++||+||++|++|+|+|++.++ ++++ +|++|+|++|||+.||+|+++.|+
T Consensus 16 ~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~ 95 (245)
T 2wa7_A 16 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESI 95 (245)
T ss_dssp GGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 599999999999999999 6778899999999999999999999999999 5665 589999999999999999999998
Q ss_pred CCC
Q psy10625 99 ERR 101 (104)
Q Consensus 99 ~~~ 101 (104)
++.
T Consensus 96 ~lv 98 (245)
T 2wa7_A 96 KLV 98 (245)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 8
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=99.83 E-value=3.7e-21 Score=143.05 Aligned_cols=80 Identities=31% Similarity=0.537 Sum_probs=73.2
Q ss_pred chhhhhhhhchHHHHHhhc-C-----CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHh
Q psy10625 21 FFFLFFKSKPYPNQIYSHF-Q-----ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH 94 (104)
Q Consensus 21 ~~w~~~Q~ktft~WvN~~L-~-----~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk 94 (104)
++|+.+|+++||+|||++| + .+..|+||++||+||++|++|+|+|+|.++++ .+|++|+|++||++.||+|++
T Consensus 7 ~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~~k 85 (245)
T 1sh5_A 7 DERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLR 85 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC-CCCcchHHHHHhHHHHHHHHH
Confidence 3599999999999999999 5 34689999999999999999999999999986 578899999999999999999
Q ss_pred hCCCCCC
Q psy10625 95 TKPGERR 101 (104)
Q Consensus 95 ~~gi~~~ 101 (104)
+.|+.+.
T Consensus 86 ~~g~~l~ 92 (245)
T 1sh5_A 86 HRQVKLV 92 (245)
T ss_dssp HTTCCCC
T ss_pred HcCCccc
Confidence 9998763
No 9
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=99.83 E-value=5.7e-21 Score=142.35 Aligned_cols=82 Identities=34% Similarity=0.543 Sum_probs=74.0
Q ss_pred CcchhhhhhhhchHHHHHhhc-CCC-CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhC
Q psy10625 19 GTFFFLFFKSKPYPNQIYSHF-QAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK 96 (104)
Q Consensus 19 ~~~~w~~~Q~ktft~WvN~~L-~~~-~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~ 96 (104)
+..+|+.+|+++||+|||++| +.+ .+|+|+++||+||++|++|+|+|+|.++++ .+|++|+|++||++.||+|+++.
T Consensus 9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~~k~~ 87 (246)
T 1dxx_A 9 DSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQNN 87 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-CCCSSHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC-CCCccHHHHHHHHHHHHHHHHHc
Confidence 344599999999999999999 555 479999999999999999999999999986 46889999999999999999999
Q ss_pred CCCCC
Q psy10625 97 PGERR 101 (104)
Q Consensus 97 gi~~~ 101 (104)
|+++.
T Consensus 88 g~~l~ 92 (246)
T 1dxx_A 88 NVDLV 92 (246)
T ss_dssp TCCCT
T ss_pred CCccc
Confidence 98763
No 10
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.80 E-value=1.7e-20 Score=157.10 Aligned_cols=79 Identities=43% Similarity=0.638 Sum_probs=75.3
Q ss_pred hhhhhhhhchHHHHHhhc-CCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 22 FFLFFKSKPYPNQIYSHF-QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L-~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
.|+.+|+++||+|||++| +.+.+|+||++||+||++|+.|+|+|+|.+++++++|++|+|+++||+.||+|++..|+++
T Consensus 4 ~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~~~ 83 (863)
T 1sjj_A 4 AWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKL 83 (863)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCCcc
Confidence 499999999999999999 7778999999999999999999999999999998889999999999999999999999875
No 11
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.76 E-value=1.2e-18 Score=131.51 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=69.6
Q ss_pred chhhhhhhhchHHHHHhhc-CCC---------CchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCC-CccHHHHHHhHH
Q psy10625 21 FFFLFFKSKPYPNQIYSHF-QAR---------MEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNN-GKMRVHKVENVN 87 (104)
Q Consensus 21 ~~w~~~Q~ktft~WvN~~L-~~~---------~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~-p~~r~~kieNv~ 87 (104)
..|...|+++||+|||++| +.+ ..|.|+++||+||++|++|+|.|++.+++ ++++ |.+++|++|||+
T Consensus 19 ~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~ 98 (275)
T 1aoa_A 19 HSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLN 98 (275)
T ss_dssp --CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHH
Confidence 4599999999999999999 421 35899999999999999999999999987 4554 456999999999
Q ss_pred HHHHHHhhCCCCCC
Q psy10625 88 KSLAFLHTKPGERR 101 (104)
Q Consensus 88 ~al~flk~~gi~~~ 101 (104)
.||+|+++.|+++.
T Consensus 99 ~aL~~~k~~g~~l~ 112 (275)
T 1aoa_A 99 LALNSASAIGCHVV 112 (275)
T ss_dssp HHHHHHHHTTCCCT
T ss_pred HHHHHHHHcCCccc
Confidence 99999999998764
No 12
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.74 E-value=1.8e-18 Score=139.78 Aligned_cols=79 Identities=23% Similarity=0.182 Sum_probs=70.1
Q ss_pred hhhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCCC--ccHHHHHHhHHHHHHHHhhCC
Q psy10625 22 FFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNNG--KMRVHKVENVNKSLAFLHTKP 97 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~p--~~r~~kieNv~~al~flk~~g 97 (104)
.|+.+|+||||+|||+++ .+..|+||++||+||++|++|+|+|+|++++ +.++| ++|+|+++||+.||+|+++.|
T Consensus 272 ~~~~~q~ktf~~WiN~~~-~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k~~~ 350 (506)
T 1pxy_A 272 VETCRDERCYRLWINSLG-IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK 350 (506)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhcC-CCCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHHHcC
Confidence 499999999999999987 3478999999999999999999999999886 23343 789999999999999999999
Q ss_pred CCCC
Q psy10625 98 GERR 101 (104)
Q Consensus 98 i~~~ 101 (104)
+.+.
T Consensus 351 v~l~ 354 (506)
T 1pxy_A 351 FSLV 354 (506)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8763
No 13
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.62 E-value=4.6e-16 Score=125.98 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=62.4
Q ss_pred hhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHH-HcCCcC--CCCCC-C-----ccHHHHHHhHHHHHHHHhh
Q psy10625 25 FFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEI-ISGEKL--GKPNN-G-----KMRVHKVENVNKSLAFLHT 95 (104)
Q Consensus 25 ~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~-Ls~~~l--~~~~~-p-----~~r~~kieNv~~al~flk~ 95 (104)
++|+++||+|||++. .+..|+||++||+||++|++|+|. ++|. + +++++ | ++|+|++|||+.||+|+++
T Consensus 284 ~~q~k~f~~WiN~~~-~~~~v~~l~~DL~DG~~L~~Lle~l~~g~-v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~ 361 (513)
T 1rt8_A 284 EREARVFTLWLNSLD-VTPSIHDFFNNLRDGLILLQAYDKITPNT-VNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN 361 (513)
T ss_dssp HHHHHHHHHHHHHTT-CSSCCSCHHHHTTTSHHHHHHHHHHSTTC-CCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCccCHHHHHhhHHHHHHHHHHhCCCC-cchhhhcCCcccccccchHHHHHHHHHHHHHHHH
Confidence 589999999999974 456799999999999999999995 4553 3 23332 3 6899999999999999999
Q ss_pred CCCCCC
Q psy10625 96 KPGERR 101 (104)
Q Consensus 96 ~gi~~~ 101 (104)
.|+++.
T Consensus 362 ~gv~lv 367 (513)
T 1rt8_A 362 QGFSLV 367 (513)
T ss_dssp TTCCCT
T ss_pred cCceee
Confidence 999864
No 14
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.61 E-value=6.1e-16 Score=125.24 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=66.1
Q ss_pred cchhhhhhhhchHHHHHhhc-CCC---------CchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-----CCccHHHH
Q psy10625 20 TFFFLFFKSKPYPNQIYSHF-QAR---------MEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-----NGKMRVHK 82 (104)
Q Consensus 20 ~~~w~~~Q~ktft~WvN~~L-~~~---------~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-----~p~~r~~k 82 (104)
+..|...|+++||+|||++| +.+ ..|.||++||+||++|++|+|+|++.+++ +.+ +|.+|+|+
T Consensus 6 ~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~ 85 (513)
T 1rt8_A 6 MHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKC 85 (513)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHH
Confidence 34699999999999999999 431 25789999999999999999999998774 222 47899999
Q ss_pred HHhHHHHHHHHhhCCC
Q psy10625 83 VENVNKSLAFLHTKPG 98 (104)
Q Consensus 83 ieNv~~al~flk~~gi 98 (104)
+||++.||+|++..|+
T Consensus 86 ~eNi~~~L~~~k~~g~ 101 (513)
T 1rt8_A 86 IENNNVVINSAKAMGG 101 (513)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999888
No 15
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.58 E-value=1.9e-15 Score=122.13 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=65.6
Q ss_pred hhhhhhhhchHHHHHhhc-CC---------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCC-Cc-cHHHHHHhHH
Q psy10625 22 FFLFFKSKPYPNQIYSHF-QA---------RMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNN-GK-MRVHKVENVN 87 (104)
Q Consensus 22 ~w~~~Q~ktft~WvN~~L-~~---------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~-p~-~r~~kieNv~ 87 (104)
+|.+.|+++|++|||++| +. .+.|.||++||+||++|++|++.|++.+++ +.++ |. ++++++||++
T Consensus 3 ~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi~ 82 (506)
T 1pxy_A 3 PGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHT 82 (506)
T ss_dssp ----CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHHH
Confidence 578999999999999999 43 134889999999999999999999999984 4443 43 5899999999
Q ss_pred HHHHHHhhCCCCCC
Q psy10625 88 KSLAFLHTKPGERR 101 (104)
Q Consensus 88 ~al~flk~~gi~~~ 101 (104)
.||+|++..|+++.
T Consensus 83 ~~L~~~k~~g~~~~ 96 (506)
T 1pxy_A 83 LCLNSAKAVGCSVV 96 (506)
T ss_dssp HHHHHHHHTTCCCT
T ss_pred HHHHHHHHhCCCcC
Confidence 99999999998764
No 16
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=99.01 E-value=7.1e-10 Score=75.73 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=65.2
Q ss_pred hhhhhchHHHHHhhc-CC--CCchhhHH-hhhhhHHHHHHHHHHHcCCcCCCC--CCCc-cHHHHHHhHHHHHHHHhhCC
Q psy10625 25 FFKSKPYPNQIYSHF-QA--RMEVEDLF-IDLADGKKLLKLLEIISGEKLGKP--NNGK-MRVHKVENVNKSLAFLHTKP 97 (104)
Q Consensus 25 ~~Q~ktft~WvN~~L-~~--~~~V~dl~-~Dl~DG~~Li~LLe~Ls~~~l~~~--~~p~-~r~~kieNv~~al~flk~~g 97 (104)
.+..+++.+|+|.++ +. ...|+|+. ++++||+.++.|++.+.+..+..- .+|. .+.++.+|+++||++.+.-|
T Consensus 6 ~i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG 85 (124)
T 1wjo_A 6 SGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIG 85 (124)
T ss_dssp CSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 567889999999999 43 35799999 999999999999999999988642 2566 68999999999999999988
Q ss_pred CCC
Q psy10625 98 GER 100 (104)
Q Consensus 98 i~~ 100 (104)
+.+
T Consensus 86 ~~~ 88 (124)
T 1wjo_A 86 ARV 88 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 754
No 17
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=73.88 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=65.6
Q ss_pred hhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 23 FLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
+....+..+..||++.++... -.++++.|+||++|++|+..+....+++++.+.+.+++++|++..|++++.-|+.
T Consensus 14 y~~~~~~e~~~WIe~~l~~~~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~ 89 (136)
T 1wyp_A 14 YDHQREQELREWIEGVTGRRI-GNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVK 89 (136)
T ss_dssp CCHHHHHHHHHHHHHHTCCCC-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSSCSHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHhCCCC-cHHHHHHHccHHhHHHHHHhhCCCCcccccccccchHHHHHHHHHHHHHHHcCCC
Confidence 444556789999999885443 3689999999999999999999999988877788899999999999999987775
No 18
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=98.95 E-value=1e-09 Score=72.66 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=62.3
Q ss_pred hhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 28 SKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
++.+..|+++.++... -.++++.|+||++|++|+..+.+..+++++.+.+.+++++|++..|++++.-|+.
T Consensus 5 e~e~~~WIe~~l~~~~-~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~ 75 (108)
T 1h67_A 5 ERQLRVWIEGATGRRI-GDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVK 75 (108)
T ss_dssp SHHHHHHHHHHHSCCC-CSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCCC-cHHHHHHHccHHHHHHHHHHhCCCCcccccccccchHHHHHHHHHHHHHHHcCCC
Confidence 4569999999885443 3689999999999999999999999998777788899999999999999987775
No 19
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.93 E-value=2.6e-09 Score=74.35 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=65.6
Q ss_pred hhhhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 23 FLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
+....+..+..||+..++... -.++.+.|+||++|++|+..|....+++++.+.+.+++++|++..|++++.-|+.
T Consensus 14 y~~~~~~e~~~WIe~~l~~~i-~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~~~f~~~eNI~~FL~a~~~~Gv~ 89 (146)
T 1wyn_A 14 YDPQKEAELRTWIEGLTGLSI-GPDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMN 89 (146)
T ss_dssp CCTTHHHHHHHHHHHHHCCCC-CSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHhCCCC-cHHHHHHHccHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHcCCC
Confidence 344456789999999885544 3689999999999999999999999988877888999999999999999987776
No 20
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6.6e-09 Score=72.86 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=66.3
Q ss_pred hhhhhhhchHHHHHhhcCCCCc-----hhhHHhhhhhHHHHHHHHHHHcC---CcCCCCCCCccHHHHHHhHHHHHHHHh
Q psy10625 23 FLFFKSKPYPNQIYSHFQARME-----VEDLFIDLADGKKLLKLLEIISG---EKLGKPNNGKMRVHKVENVNKSLAFLH 94 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L~~~~~-----V~dl~~Dl~DG~~Li~LLe~Ls~---~~l~~~~~p~~r~~kieNv~~al~flk 94 (104)
+....+..+..||+..|+...+ -.++.+.|+||++|++|+..|.. .++++++.+++.+++++|++.-|++++
T Consensus 14 y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~~~F~~~eNI~~FL~ac~ 93 (155)
T 1wym_A 14 YDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAE 93 (155)
T ss_dssp CCHHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccCCCccccHHHHHHHHHHHHH
Confidence 3444566799999998854433 26999999999999999999999 899988878899999999999999999
Q ss_pred hCCCCC
Q psy10625 95 TKPGER 100 (104)
Q Consensus 95 ~~gi~~ 100 (104)
.-|+.-
T Consensus 94 ~~Gv~~ 99 (155)
T 1wym_A 94 RYGINT 99 (155)
T ss_dssp HHTCCT
T ss_pred HcCCCc
Confidence 977753
No 21
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-08 Score=68.22 Aligned_cols=71 Identities=20% Similarity=0.074 Sum_probs=58.2
Q ss_pred hchHHHHHhhcC--C-C----CchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 29 KPYPNQIYSHFQ--A-R----MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 29 ktft~WvN~~L~--~-~----~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
+.+..|+++.+. . . .....+++.|+||++|++|+..+....+++++ .|++.+++++|++..|++++.-|+.
T Consensus 9 ~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~~ 87 (121)
T 1wyr_A 9 EQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVE 87 (121)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence 348899999742 1 1 12334789999999999999999999999865 6888999999999999999987763
No 22
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=98.80 E-value=1e-08 Score=71.15 Aligned_cols=77 Identities=14% Similarity=-0.010 Sum_probs=64.4
Q ss_pred hhhhhhhchHHHHHhhcCCCC-----chhhHHhhhhhHHHHHHHHHHHcC---CcCC-CCCCCccHHHHHHhHHHHHHHH
Q psy10625 23 FLFFKSKPYPNQIYSHFQARM-----EVEDLFIDLADGKKLLKLLEIISG---EKLG-KPNNGKMRVHKVENVNKSLAFL 93 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L~~~~-----~V~dl~~Dl~DG~~Li~LLe~Ls~---~~l~-~~~~p~~r~~kieNv~~al~fl 93 (104)
+....+..+..||+..|+... .-.++.+.|+||++|++|+..|.. ..++ +++.+++.+++++|++.-|+++
T Consensus 6 y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac 85 (144)
T 1ujo_A 6 SGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAA 85 (144)
T ss_dssp SCCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHH
Confidence 344456679999999885432 247999999999999999999998 7788 7677788999999999999999
Q ss_pred hhCCCC
Q psy10625 94 HTKPGE 99 (104)
Q Consensus 94 k~~gi~ 99 (104)
+.-|+.
T Consensus 86 ~~~Gv~ 91 (144)
T 1ujo_A 86 EDYGVI 91 (144)
T ss_dssp HHHTCC
T ss_pred HHcCcC
Confidence 997775
No 23
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.65 E-value=4.1e-08 Score=71.63 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=62.6
Q ss_pred hhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 28 SKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 28 ~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
...+..|++..++... ...|+++.|+||++||+|+..|....+++++ .+++.+++++|++..|++++.-|+..
T Consensus 57 ~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~ 131 (203)
T 1p5s_A 57 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPE 131 (203)
T ss_dssp HHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCCc
Confidence 4668899999875443 4679999999999999999999999998864 56778999999999999999988753
No 24
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=98.60 E-value=2.4e-07 Score=63.06 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=58.1
Q ss_pred hhchHHHHHhh--cCC-C---CchhhH-HhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCC
Q psy10625 28 SKPYPNQIYSH--FQA-R---MEVEDL-FIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPG 98 (104)
Q Consensus 28 ~ktft~WvN~~--L~~-~---~~V~dl-~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi 98 (104)
+..+..|++.. |.. . ..-.++ .+.|+||++|++|+..+.+..+++++ .|++.+++++|++..|++++. -|+
T Consensus 14 ~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~ 93 (126)
T 2l3g_A 14 AEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL 93 (126)
T ss_dssp HHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence 34488999997 422 1 234566 59999999999999999999999875 688899999999999999998 665
No 25
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.51 E-value=2.2e-07 Score=65.25 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=61.5
Q ss_pred hchHHHHHhhcCCCCc-hhhHHhhhhhHHHHHHHHHHHcCCcCCCCCC-CccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 29 KPYPNQIYSHFQARME-VEDLFIDLADGKKLLKLLEIISGEKLGKPNN-GKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 29 ktft~WvN~~L~~~~~-V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~-p~~r~~kieNv~~al~flk~~gi~ 99 (104)
.....|++..++...+ -.|+.+.|+||++|++|+..+....+++++. +.+.+++++|++.-|++++.-|+.
T Consensus 14 ~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~ 86 (159)
T 1p2x_A 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLP 86 (159)
T ss_dssp HHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCC
Confidence 5588999998855433 4699999999999999999999999988764 678899999999999999998875
No 26
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=98.25 E-value=8.2e-07 Score=64.01 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=61.2
Q ss_pred hhhhhhhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC--------CCccHHHHHHhHHHHHH
Q psy10625 23 FLFFKSKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN--------NGKMRVHKVENVNKSLA 91 (104)
Q Consensus 23 w~~~Q~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~--------~p~~r~~kieNv~~al~ 91 (104)
+...+ ..+..|++..++... ...++.+.|+||++|++|+..|....++ +.. .+++.+++++|++.-|+
T Consensus 23 y~~~~-~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ 101 (190)
T 2rr8_A 23 YLCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLN 101 (190)
T ss_dssp HHHHH-HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHH
T ss_pred hcHHH-HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHH
Confidence 34444 779999999885543 3579999999999999999999988774 321 24567899999999999
Q ss_pred HHhhCCCCC
Q psy10625 92 FLHTKPGER 100 (104)
Q Consensus 92 flk~~gi~~ 100 (104)
+++.-|+.-
T Consensus 102 ac~~~Gvp~ 110 (190)
T 2rr8_A 102 AMDEIGLPK 110 (190)
T ss_dssp GGGGTTCCS
T ss_pred HHHHcCCCc
Confidence 999988753
No 27
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=98.24 E-value=7.6e-07 Score=64.49 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=57.5
Q ss_pred chHHHHHhhcCCCCc-hhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC--------CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625 30 PYPNQIYSHFQARME-VEDLFIDLADGKKLLKLLEIISGEKLG--KPN--------NGKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 30 tft~WvN~~L~~~~~-V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~--------~p~~r~~kieNv~~al~flk~~gi 98 (104)
....||++.++...+ ..++.+.|+||++|++|+..|....+| +.. .+++.+++++||+.-|++++.-|+
T Consensus 51 e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~Gv 130 (193)
T 3i6x_A 51 EAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGL 130 (193)
T ss_dssp HHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcCC
Confidence 567899998865433 469999999999999999999998875 331 245678999999999999998877
Q ss_pred C
Q psy10625 99 E 99 (104)
Q Consensus 99 ~ 99 (104)
+
T Consensus 131 p 131 (193)
T 3i6x_A 131 P 131 (193)
T ss_dssp C
T ss_pred C
Confidence 5
No 28
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.18 E-value=4.9e-06 Score=56.54 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=58.8
Q ss_pred hhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 28 SKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 28 ~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
++....|||.-|+.+. .| ++++||..+++|+..|.+..+| |.. .+++....++|+..-.+.++..||+-
T Consensus 7 r~ElL~WIN~~L~~~~~ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k 79 (123)
T 2qjz_A 7 RHDMLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 79 (123)
T ss_dssp HHHHHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCCCchH----HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 3457899999886553 33 6899999999999999988888 766 79999999999999999999988863
No 29
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=6.9e-06 Score=58.05 Aligned_cols=72 Identities=8% Similarity=0.125 Sum_probs=61.1
Q ss_pred hhhhhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 25 FFKSKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 25 ~~Q~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
..+++....|||.-|+.+. .| ++++||..+|+|+..|....++ |.. .+++.+..++|+..-.+.++..||+-
T Consensus 21 ~~sr~ElL~WIN~~L~~~~~ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k 96 (159)
T 1wyo_A 21 NLSRHDMLAWVNDSLHLNYTKI----EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK 96 (159)
T ss_dssp CCCHHHHHHHHHHHSCCCCSSG----GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHHHCCCCchh----hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 4466779999999886553 23 6899999999999999988888 766 78999999999999999999988863
No 30
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=97.90 E-value=7.4e-06 Score=61.32 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=56.6
Q ss_pred hhchHHHHHhhc-CCCCc-hhhHHhhhhhHHHHHHHHHHHcCCcCCC------CC-CCccHHHHHHhHHHHHHHHhhCCC
Q psy10625 28 SKPYPNQIYSHF-QARME-VEDLFIDLADGKKLLKLLEIISGEKLGK------PN-NGKMRVHKVENVNKSLAFLHTKPG 98 (104)
Q Consensus 28 ~ktft~WvN~~L-~~~~~-V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~------~~-~p~~r~~kieNv~~al~flk~~gi 98 (104)
++...+|+|.|+ +.+.. |+|+-++++||..++.|+..+.+..++. +. .+-..-...+|+..||+..++-||
T Consensus 170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi 249 (275)
T 1aoa_A 170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGC 249 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence 667899999999 44433 9999999999999999999999985431 12 232334678999999999987776
Q ss_pred C
Q psy10625 99 E 99 (104)
Q Consensus 99 ~ 99 (104)
.
T Consensus 250 ~ 250 (275)
T 1aoa_A 250 R 250 (275)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=97.79 E-value=2.6e-05 Score=51.93 Aligned_cols=70 Identities=16% Similarity=0.045 Sum_probs=56.2
Q ss_pred hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
++...+|+|.++ + .+..|+|+-++++||..++.|+..+..+.++. . .-..-...+|+..||+..++ -||.
T Consensus 9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~-~-~l~~~~~~~n~~~af~~Ae~~lgi~ 81 (116)
T 1wyl_A 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEP-S-ELQGLGALEATAWALKVAENELGIT 81 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCC-S-SGGGCCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCH-H-HhccCCHHHHHHHHHHHHHHHcCCc
Confidence 566889999998 4 35779999999999999999999999887753 2 11123578999999999986 6774
No 32
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.6e-05 Score=53.25 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=54.9
Q ss_pred hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
++...+|+|.++ + .+..|+|+.++++||..++.|+..+..+.++.-. .+. ..++|+..||+..++-||.
T Consensus 11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~---~~~~n~~~af~~a~~LGi~ 82 (119)
T 2d89_A 11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQ---DIKENNKKAYDGFASIGIS 82 (119)
T ss_dssp HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTT---CSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhccc---CHHHHHHHHHHHHHHhCCC
Confidence 566889999999 4 3567999999999999999999999988775311 333 4578999999987766664
No 33
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=97.76 E-value=4.2e-05 Score=51.33 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=55.6
Q ss_pred hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
++...+|+|.++ + .+..|+|+.++++||..++.|+..+..+.++.-. .+. ...+|+..||+...+ -||.
T Consensus 11 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~lgi~ 83 (121)
T 2d88_A 11 SSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQ---NVEKNNQLAFDIAEKELGIS 83 (121)
T ss_dssp SCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCTT---CHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCcc---CHHHHHHHHHHHHHHHcCCC
Confidence 455889999999 4 3578999999999999999999999988775311 333 468999999999874 7774
No 34
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=97.73 E-value=2.9e-05 Score=52.68 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=55.1
Q ss_pred hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCC
Q psy10625 28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPG 98 (104)
Q Consensus 28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi 98 (104)
++...+|+|.++ +- +..|+|+-++++||..++.|+..+..+.++.-. .+. ..++|+..||+..++ -||
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~lgi 80 (128)
T 2d87_A 9 KQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQ---NRRQNFEVAFSSAETHADC 80 (128)
T ss_dssp HHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCSS---CHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCcc---CHHHHHHHHHHHHHHcCCC
Confidence 566889999999 43 578999999999999999999999988775311 333 567899999999887 365
No 35
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=97.64 E-value=4.6e-05 Score=56.24 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=57.0
Q ss_pred hhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 27 KSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 27 Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
-++...+|+|.++. +..|+|+-++++||..++.|+..+.+..++.+.. -..-..++|+..||+..++ -||.
T Consensus 144 ~~~~LL~W~~~~~~-~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~-l~~~~~~~n~~~a~~~A~~~lGi~ 215 (245)
T 2wa7_A 144 PKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSCAPGLCPDWES-WDPQKPVDNAREAVQQADDWLGVP 215 (245)
T ss_dssp HHHHHHHHHHHHST-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG-SCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCC-CCCCCCCcccchhhHHHHHHHHHHCccccccccc-cCcccHHHHHHHHHHHHHHhCCCC
Confidence 46789999999994 3569999999999999999999999887754331 1123578999999999987 7775
No 36
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=97.62 E-value=3.8e-05 Score=50.64 Aligned_cols=69 Identities=6% Similarity=0.009 Sum_probs=55.0
Q ss_pred hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625 28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH-TKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk-~~gi~ 99 (104)
++..-.|+|.++ + .+..|+|+-++++||..++.|+..+.++.++.-. .+. ...+|++.||+... .-||.
T Consensus 5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~lgi~ 77 (109)
T 1bkr_A 5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKS---NAHYNLQNAFNLAEQHLGLT 77 (109)
T ss_dssp HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTT---CHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCcC---CHHHHHHHHHHHHHHHcCCC
Confidence 566889999998 4 3568999999999999999999999988775311 333 46799999999987 45664
No 37
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=97.51 E-value=5.3e-05 Score=51.28 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=55.2
Q ss_pred hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625 28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH-TKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk-~~gi~ 99 (104)
++....|+|.++ +- +..|+|+-++++||..++.|+..+..+.++.-. .+. ...+|++.||+..+ .-||.
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~Ae~~Lgi~ 81 (127)
T 1wyq_A 9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC---NAHYNLQNAFNLAEKELGLT 81 (127)
T ss_dssp THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSS---CCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCcC---CHHHHHHHHHHHHHHHcCCC
Confidence 566889999998 43 568999999999999999999999988775311 333 35789999999997 45664
No 38
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.47 E-value=7.9e-05 Score=56.23 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=57.6
Q ss_pred hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC--CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN--NGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~--~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
.-++.+.+|+|.+++ +..|+|+-++++||..++.|+..+.+..++.+. .+. ...+|+..||+..++ -||.
T Consensus 170 s~k~~LL~W~n~~~~-~~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l~~~---~~~~n~~~Af~~Ae~~lGi~ 242 (272)
T 3hoc_A 170 TPKQRLLGWIQNKLP-QLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDAS---KPVTNAREAMQQADDWLGIP 242 (272)
T ss_dssp CHHHHHHHHHHHHCT-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTT---CHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHhhCC-CCCCCChhhcccchHHHHHHHHHhCcccccchhhcCcc---CHHHHHHHHHHHHHHhCCCC
Confidence 346789999999984 467999999999999999999999998875433 333 578999999999987 6664
No 39
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=97.43 E-value=3.5e-05 Score=51.49 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=54.4
Q ss_pred hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625 28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH-TKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk-~~gi~ 99 (104)
++..-.|+|.++ + .+..|+|+.++++||..++.|+..+..+.++. . .-..-...+|+..||+... .-||.
T Consensus 10 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~-~-~l~~~~~~~n~~~af~~Ae~~lgi~ 82 (118)
T 1bhd_A 10 EKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW-D-KVVKMSPIERLEHAFSKAQTYLGIE 82 (118)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH-H-HHHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCH-H-HhCcCCHHHHHHHHHHHHHHHcCCC
Confidence 567889999999 4 35689999999999999999999998887652 1 1011245889999999886 56664
No 40
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=97.38 E-value=3.9e-05 Score=56.40 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=55.4
Q ss_pred hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCCCCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
.++...+|+|.++ + .+..|+|+.++++||..++.|+..+.+..++. . .-..-...+|+..||+..++ -||.
T Consensus 134 ~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~-~-~l~~~~~~~n~~~a~~~a~~~lGi~ 207 (245)
T 1sh5_A 134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDM-N-KVYRQTNLENLDQAFSVAERDLGVT 207 (245)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCH-H-HHHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCH-H-HcccCCHHHHHHHHHHHHHHhCCCC
Confidence 4567899999999 4 35789999999999999999999888776652 1 00112468999999999986 6764
No 41
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.26 E-value=0.00025 Score=54.96 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=55.8
Q ss_pred hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC--CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN--NGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~--~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
.-++.+.+|+|.++. +..|+|+.++++||..++.|+..+....++-+. .+. ..++|+..||+...+ -||.
T Consensus 140 ~~k~~LL~W~~~~~~-~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~~~---~~~~n~~~Af~~Ae~~lGip 212 (347)
T 4b7l_A 140 TPKQRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQ---KPVDNAREAMQQADDWLGVP 212 (347)
T ss_dssp CHHHHHHHHHHHHCT-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTT---CHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHhhCC-CcccCCCCCCccchHHHHHHHHHhCCccccchhhcCcC---CHHHHHHHHHHHHHHhcCCC
Confidence 346779999999983 245999999999999999999999988776433 343 457899999999876 4664
No 42
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=97.26 E-value=7e-05 Score=55.21 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=54.9
Q ss_pred hhchHHHHHhhc-CC-CCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-C-CccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625 28 SKPYPNQIYSHF-QA-RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-N-GKMRVHKVENVNKSLAFLH-TKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~~-~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~-p~~r~~kieNv~~al~flk-~~gi~ 99 (104)
++...+|+|.++ +- +..|+|+-++++||..++.|+..+.+..++.-. . +. ...+|+..||+..+ .-||.
T Consensus 137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---~~~~n~~~a~~~A~~~lGi~ 210 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---SATQRLEHAFNIARYQLGIE 210 (246)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---CHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhcccC---CHHHHHHHHHHHHHHhCCCC
Confidence 567899999999 43 578999999999999999999998887665211 1 22 35789999999997 67775
No 43
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=97.26 E-value=0.00013 Score=55.70 Aligned_cols=70 Identities=6% Similarity=0.041 Sum_probs=55.6
Q ss_pred hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHh-hCCCC
Q psy10625 27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH-TKPGE 99 (104)
Q Consensus 27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk-~~gi~ 99 (104)
.++.+.+|+|.++ + .+..|+|+.++++||..++.|+..+.+..++.-. .+. ...+|+..||+... .-||.
T Consensus 190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~---~~~~N~~~Af~~Ae~~LGi~ 263 (296)
T 3f7p_A 190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ---TNLENLDQAFSVAERDLGVT 263 (296)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS---CHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc---cHHHHHHHHHHHHHHhCCCC
Confidence 4667899999999 3 3578999999999999999999999887765211 333 45789999999994 56764
No 44
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=97.24 E-value=0.00025 Score=52.65 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=56.3
Q ss_pred hhhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 27 KSKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 27 Q~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
.++....|+|.++ + .+..|+|+-++++||..++.|+..+.+..++.-. .+. ...+|+..||+...+ -||.
T Consensus 141 ~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~~---~~~~n~~~a~~~A~~~lGi~ 214 (254)
T 1wku_A 141 AKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKD---DPIGNLNTAFEVAEKYLDIP 214 (254)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCTT---CHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccCcC---CHHHHHHHHHHHHHHHcCCC
Confidence 3567899999988 3 3567999999999999999999999988775311 333 468999999999986 6775
No 45
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=97.09 E-value=0.0012 Score=53.63 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=54.6
Q ss_pred hHHHHHhhc--CC-------CCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCcc-HHHHHHhHHHHHHHH-hhC
Q psy10625 31 YPNQIYSHF--QA-------RMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKM-RVHKVENVNKSLAFL-HTK 96 (104)
Q Consensus 31 ft~WvN~~L--~~-------~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~-r~~kieNv~~al~fl-k~~ 96 (104)
-..|++.-. .. ..++.|+...|+||++|+.|+..|....++ +.+ .|++ .+++++||+.=|+++ +.-
T Consensus 10 ~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~ 89 (587)
T 3ky9_A 10 CTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKF 89 (587)
T ss_dssp HHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHc
Confidence 457998632 21 235899999999999999999999998885 344 4665 599999999999999 666
Q ss_pred CCC
Q psy10625 97 PGE 99 (104)
Q Consensus 97 gi~ 99 (104)
|++
T Consensus 90 g~~ 92 (587)
T 3ky9_A 90 GLK 92 (587)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 46
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.002 Score=43.77 Aligned_cols=77 Identities=9% Similarity=-0.055 Sum_probs=63.1
Q ss_pred hhhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCCCCccHHHHHHhHHHH-HHHHhhCCCCCC
Q psy10625 25 FFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPNNGKMRVHKVENVNKS-LAFLHTKPGERR 101 (104)
Q Consensus 25 ~~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~~p~~r~~kieNv~~a-l~flk~~gi~~~ 101 (104)
+-+.+..-+|+++ +..+.++.++..||+||+.+++++..+-++.+. .|..+.+...|+.|=+.- .++++.-|+.+.
T Consensus 14 ~ee~~el~~WL~~-l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~l~ 92 (127)
T 2ee7_A 14 EEALHQLYLWVDN-IPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSVP 92 (127)
T ss_dssp HHHHHHHHHHHHH-SCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCCCC
T ss_pred HHHHHHHHHHHHc-CCCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCCCC
Confidence 3456668899996 876677999999999999999999999988775 355677888999999887 478888888765
Q ss_pred C
Q psy10625 102 P 102 (104)
Q Consensus 102 ~ 102 (104)
+
T Consensus 93 ~ 93 (127)
T 2ee7_A 93 D 93 (127)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.016 Score=39.38 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=53.4
Q ss_pred hhchHHHHHhhcCCCC-chhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCC
Q psy10625 28 SKPYPNQIYSHFQARM-EVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L~~~~-~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~ 99 (104)
+..+..|+|+-|+.+. . .+++++|...+++++.+-|. +| |.. .++.....+.|....=+.+...+|+
T Consensus 12 R~elL~WiN~~L~~n~~k----iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~ 82 (127)
T 2qjx_A 12 RTELLTWLNGLLNLNYKK----IEECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFSRHGIE 82 (127)
T ss_dssp HHHHHHHHHHHHTCCCCS----GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCccH----HHHccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4558899999886653 3 45568999999999999975 55 434 6888999999999888888888876
No 48
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=96.01 E-value=0.024 Score=42.82 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=56.1
Q ss_pred hhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 28 SKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 28 ~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
+.....|+|.-|+.+.. -.+++++|...|+|++.|-...++ |.. +++.....++|....=+.++..||+-
T Consensus 17 R~elL~WiN~~L~~~~~---kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k 89 (268)
T 2r8u_A 17 RHDMLAWINESLQLNLT---KIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89 (268)
T ss_dssp HHHHHHHHHHHHTCCCC---CGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCcc---hHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 45588999998865531 146789999999999999987776 444 78999999999988888888888763
No 49
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.00 E-value=0.023 Score=39.40 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=52.7
Q ss_pred hchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC--CCC-CCccHHHHHHhHHHHHHHHhhCCCCC
Q psy10625 29 KPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--KPN-NGKMRVHKVENVNKSLAFLHTKPGER 100 (104)
Q Consensus 29 ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~--~~~-~p~~r~~kieNv~~al~flk~~gi~~ 100 (104)
.....|+|+-|+.+.. . .+++++|...|+|++.|-|. ++ |.. .++.....++|....=+.++..||+-
T Consensus 9 ~eLL~WiN~~L~~n~t--k-IE~l~sGAaYCQlmD~lfg~-i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k 79 (145)
T 4abo_I 9 QELLAWINQVTSLGLT--R-IEDCGKGYAMIQIFDSIYQD-IPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDK 79 (145)
T ss_dssp HHHHHHHHHHHTCCCC--S-GGGGGGSHHHHHHHHHHHCC-SCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCcc--h-HHHccccHHHHHHHHHHhcC-cchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4478999997765531 1 45789999999999999954 54 444 68899999999988888888877753
No 50
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=95.91 E-value=0.0012 Score=55.26 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=54.8
Q ss_pred hhchHHHHHhhc-C-CCCchhhHHhhhhhHHHHHHHHHHHcCCcCCCCC-CCccHHHHHHhHHHHHHHHhh-CCCC
Q psy10625 28 SKPYPNQIYSHF-Q-ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHT-KPGE 99 (104)
Q Consensus 28 ~ktft~WvN~~L-~-~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~~~~-~p~~r~~kieNv~~al~flk~-~gi~ 99 (104)
++.+..|+|.++ + .+..|+|+-++++||..++.|+..+.+..++... .|. ..++|+..||+.... -||.
T Consensus 123 ~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~---~~~~n~~~a~~~a~~~lg~~ 195 (863)
T 1sjj_A 123 KEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKD---DPLTNLNTAFDVAEKYLDIP 195 (863)
T ss_dssp TTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSC---CCGGGCTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCCC---CHHHHHHHHHHHHHHhCCCC
Confidence 567999999988 3 3567999999999999999999999988776321 232 357899999998876 5664
No 51
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=95.59 E-value=0.025 Score=39.56 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=48.1
Q ss_pred hhhhchHHHHHhhcCCCCchhhHHhhhhhHHHHHHHHHHHcCCcCC-----CCC-CC-ccHHHHHHhHHHHHHHHhh
Q psy10625 26 FKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG-----KPN-NG-KMRVHKVENVNKSLAFLHT 95 (104)
Q Consensus 26 ~Q~ktft~WvN~~L~~~~~V~dl~~Dl~DG~~Li~LLe~Ls~~~l~-----~~~-~p-~~r~~kieNv~~al~flk~ 95 (104)
-...++..|+|+ +....++.+ ++||.||+.|.++|..+.++.+. +.. .+ ....-++.|+...++-+.+
T Consensus 9 ~~~~aLl~W~~t-f~~~~~~~~-~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 83 (164)
T 1wix_A 9 PLCDSLIIWLQT-FKTASPCQD-VKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS 83 (164)
T ss_dssp HHHHHHHHHHTT-CCCSSCCCS-HHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCCcCc-HHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence 346679999999 643445655 79999999999999999998764 222 12 3455677777777764443
No 52
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.52 E-value=46 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHhhCCCCCCCC
Q psy10625 83 VENVNKSLAFLHTKPGERRPS 103 (104)
Q Consensus 83 ieNv~~al~flk~~gi~~~~~ 103 (104)
-.|++.|+++|-...-...||
T Consensus 45 ~Gnve~Ave~L~~~~~~~~~~ 65 (67)
T 2dna_A 45 DGDTNAAIYKLKSSQGFSGPS 65 (67)
T ss_dssp TSCHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHHhCCCccCCC
Confidence 468999999999988888787
No 53
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=24.85 E-value=60 Score=22.80 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=25.6
Q ss_pred CccHHHHHHhHHHHHHHHhhCCCCCCCCC
Q psy10625 76 GKMRVHKVENVNKSLAFLHTKPGERRPSK 104 (104)
Q Consensus 76 p~~r~~kieNv~~al~flk~~gi~~~~~~ 104 (104)
..+.-+.++++..+++.+++.|..++|+|
T Consensus 207 s~~~eeh~~~l~~v~~~L~~~gl~l~~~K 235 (255)
T 3fsi_A 207 ATSELDCQQGTRALLQTLGNLGYRASAKK 235 (255)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCBCTTT
T ss_pred eCCHHHHHHHHHHHHHHHHHCCeEECHHH
Confidence 45667888999999999999999999987
No 54
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=20.16 E-value=55 Score=22.36 Aligned_cols=19 Identities=16% Similarity=-0.057 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHhhCCCCCC
Q psy10625 83 VENVNKSLAFLHTKPGERR 101 (104)
Q Consensus 83 ieNv~~al~flk~~gi~~~ 101 (104)
-.|+..|.++|++.||.+.
T Consensus 104 ~rNv~~a~~~L~~~gI~i~ 122 (159)
T 2f9z_C 104 ARNVEAVKKHLKDFGIKLL 122 (159)
T ss_dssp HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCcEE
Confidence 3799999999999999763
Done!