RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10625
         (104 letters)



>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain.  The CH domain is
          found in both cytoskeletal proteins and signal
          transduction proteins. The CH domain is involved in
          actin binding in some members of the family. However in
          calponins there is evidence that the CH domain is not
          involved in its actin binding activity. Most member
          proteins have from two to four copies of the CH domain,
          however some proteins such as calponin have only a
          single copy.
          Length = 104

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 45 VEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPG 98
          V + F DL DG  L  LL  +    +      K R  K+EN+N +L F   K G
Sbjct: 20 VTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLENLNLALEFAEKKLG 73


>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein
          fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton].
          Length = 612

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 44 EVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLHTK 96
          E  DL  DL DG KL +LLE +  +  G+ N   + R+H +ENV+  L F+  K
Sbjct: 29 EFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGK 82


>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
          may be present as a single copy or in tandem repeats
          (which increases binding affinity). The CH domain is
          found in cytoskeletal and signal transduction proteins,
          including actin-binding proteins like spectrin,
          alpha-actinin, dystrophin, utrophin, and fimbrin,
          proteins essential for regulation of cell shape
          (cortexillins), and signaling proteins (Vav).
          Length = 107

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 45 VEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFLH 94
          + +   DL DG  L KLL  +S + + K   N   R  ++EN+N +L F  
Sbjct: 22 INNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAE 72


>gnl|CDD|214479 smart00033, CH, Calponin homology domain.  Actin binding domains
          present in duplicate at the N-termini of spectrin-like
          proteins (including dystrophin, alpha-actinin). These
          domains cross-link actin filaments into bundles and
          networks. A calponin homology domain is predicted in
          yeasst Cdc24p.
          Length = 101

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 45 VEDLFIDLADGKKLLKLLEIISGEKLGK--PNNGKMRVHKVENVNKSLAFLH 94
          V +   DL DG  L  LL  +S   + K        R  K+EN+N +L+F  
Sbjct: 19 VTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIENINLALSFAE 70


>gnl|CDD|217147 pfam02618, YceG, YceG-like family.  This family of proteins is
          found in bacteria. Proteins in this family are
          typically between 332 and 389 amino acids in length.
          This family was previously incorrectly annotated and
          names as aminodeoxychorismate lyase. The structure of
          Escherichia coli yceG was solved by X-ray
          crystallography.
          Length = 291

 Score = 26.3 bits (59), Expect = 3.3
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 16 LADGTFFFLFFKSKPYPNQIYS---HFQARMEVEDLFIDLADGKKLLKLLEIISGEKL 70
          +     F L+ + K    ++ +     +  M   ++   L  GK +   + I  G  L
Sbjct: 24 IKSALAFRLYARLKGKDGKLKAGEYELKPGMSAAEILEKLVSGKVVQYKVTIPEGLTL 81


>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
          Length = 464

 Score = 25.7 bits (56), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 63  EIISG---EKLGKPNNGKMRVHKVENVNKS 89
           E+I+G   E  G    GK  VH  ++VN+S
Sbjct: 106 EVIAGRANELAGNGRGGKSPVHPNDHVNRS 135


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,529,298
Number of extensions: 482334
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 19
Length of query: 104
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 35
Effective length of database: 7,877,176
Effective search space: 275701160
Effective search space used: 275701160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)