RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10625
(104 letters)
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 78.4 bits (193), Expect = 3e-19
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 37 SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
SH + ++E++ D +G KL+ LLE+ISGE+L +P+ GKMR HK+ NVNK+L F+ +
Sbjct: 38 SHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIAS 97
Query: 96 K 96
K
Sbjct: 98 K 98
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 71.5 bits (175), Expect = 8e-17
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 37 SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKP--NNGKMRVHKVENVNKSLAFL 93
H + + +L DL+DG +L+ LLE++S +++ + R ++ENV+ +L FL
Sbjct: 31 EHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFL 90
Query: 94 HTK 96
+
Sbjct: 91 DRE 93
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 71.2 bits (174), Expect = 1e-16
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 40 QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK 96
+A+ + DL+ DL DG L+ LLE++SG+ L + G+MR HK++NV +L +L +
Sbjct: 32 EAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHR 87
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 71.3 bits (174), Expect = 2e-16
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 37 SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
H + DL+ DL DG L+ LLE++SG+ L + G+MR HK++NV +L +L
Sbjct: 84 KHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRH 142
Query: 96 K 96
+
Sbjct: 143 R 143
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 66.8 bits (163), Expect = 7e-16
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 33 NQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLA 91
N + + + DL D+ DG L +++++++ EK+ N K R +EN++ L
Sbjct: 28 NHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLN 87
Query: 92 FLHTK 96
FL K
Sbjct: 88 FLAAK 92
>1sjj_A Actinin; 3-helix bundle, calponin homology domain,
calmodulin-like domain, actin binding protein,
contractIle protein; 20.00A {Gallus gallus} SCOP:
i.15.1.1
Length = 863
Score = 70.3 bits (171), Expect = 8e-16
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 40 QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTK 96
+A ++E++ D DG KL+ LLE+ISGE+L KP GKMRVHK+ NVNK+L F+ +K
Sbjct: 23 KAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASK 79
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 66.9 bits (163), Expect = 5e-15
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 37 SHFQAR--MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLH 94
+ F +E+LF DL DG++LL LLE ++G+KL K G RVH + NVNK+L L
Sbjct: 27 AQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQ 85
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 67.0 bits (163), Expect = 6e-15
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 37 SHFQAR-MEVEDLFIDLADGKKLLKLLEIISGEKLGKP--NNGKMRVHKVENVNKSLAFL 93
H + + +L DL+DG +L+ LLE++S +K+ + R ++ENV+ +L FL
Sbjct: 58 EHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 117
Query: 94 HTK 96
+
Sbjct: 118 DRE 120
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 65.7 bits (160), Expect = 2e-14
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKM---RVHKVENVNKSLAFLHTK 96
+DLF + DG L K++ + + + + K EN+N +L
Sbjct: 51 PNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAI 107
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 65.5 bits (159), Expect = 4e-14
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 36 YSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNN----GKMRVHKVENVNKSLA 91
+ V ++F D+ +G LL++L+ +S + + KM KVEN N+ +
Sbjct: 285 INSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIK 344
Query: 92 FLHTKP 97
Sbjct: 345 IGKQLK 350
Score = 63.2 bits (153), Expect = 2e-13
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 34 QIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGK----MRVHKVENVNKS 89
+ L+ + DG L KL+ + + + + EN
Sbjct: 25 FLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLC 84
Query: 90 LAFLHTK 96
L
Sbjct: 85 LNSAKAV 91
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin
homology, actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 57.8 bits (139), Expect = 2e-11
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 34 QIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP-------NNGKMRVHKVENV 86
+ S E + F DG L KL+ + + + N +EN
Sbjct: 30 DVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENN 89
Query: 87 NKSLAFLHTK 96
N +
Sbjct: 90 NVVINSAKAM 99
Score = 55.5 bits (133), Expect = 1e-10
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 36 YSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLG--------KPNNGKMRVHKVENVN 87
+ + D F +L DG LL+ + I+ + + MR VEN N
Sbjct: 294 LNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCN 353
Query: 88 KSLAFLHTK 96
++ +
Sbjct: 354 YAVDLGKNQ 362
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 54.1 bits (130), Expect = 5e-11
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 40 QARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPN---NGKMRVHKVENVNKSLAFLHTK 96
+ +EV +L ADG L+ L+ ++ G + + KV NV+ + +
Sbjct: 37 KLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDG 96
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 27.1 bits (60), Expect = 0.83
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 46 EDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
+ L DG L + + + + K N H++EN+ + +
Sbjct: 36 NNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITK 85
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 25.8 bits (57), Expect = 2.1
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 46 EDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
++ L DG L +L+ + + K N+ HK+EN+ L +
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKH 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.0
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 20/106 (18%)
Query: 4 FARMEVEDLFI--DLADGTFFFLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLKL 61
++ E++ + + D GT LF+ ++ F VE++ L K L
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKF-----VEEV---LRINYKF--L 94
Query: 62 LEIISGEKLGKPNNGKMRVHKVE---NVNKSLAFLHTKPGERRPSK 104
+ I E+ +M + + + N N+ A + R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQP 136
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 25.4 bits (56), Expect = 3.7
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 23 FLFFKSKPYPNQIYSHFQARMEVEDLFIDLADGKKLLK 60
++F S +++ + E ID + +LK
Sbjct: 452 IVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLK 489
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 24.9 bits (55), Expect = 6.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 63 EIISG---EKLGKPNNGKMRVHKVENVNKS 89
E+IS E LG K+ VH ++VNKS
Sbjct: 135 EVISNRAIEMLGGELGSKIPVHPNDHVNKS 164
>1rki_A Hypothetical protein; structural genomics, (beta-alpha-beta)X2,
beta-loop-beta-BET motif, unknown function; HET: P6G
PG4; 1.60A {Pyrobaculum aerophilum} SCOP: d.308.1.2
Length = 102
Score = 23.9 bits (51), Expect = 8.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 31 YPNQIYSHFQARMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKV 83
P+++Y +E + + L KKL+K +EI KPN K + ++
Sbjct: 38 GPSKVYVST--SLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEI 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.401
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,638,043
Number of extensions: 88961
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 36
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)