RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10625
(104 letters)
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 500
Score = 62.3 bits (151), Expect = 2e-13
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKL----GKPNNGKMRVHKVENVNKSLAFL 93
L+ + DG L KL+ + + + EN L
Sbjct: 28 PHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSA 82
Score = 57.3 bits (138), Expect = 1e-11
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 44 EVEDLFIDLADGKKLLKLLEIISGEKLG----KPNNGKMRVHKVENVNKSLAFLHTK 96
V ++F D+ +G LL++L+ +S + KM KVEN N+ +
Sbjct: 287 YVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQL 343
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 60.8 bits (147), Expect = 5e-13
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKL-------GKPNNGKMRVHKVENVNKSLAFLHT 95
E + F DG L KL+ + + + N +EN N +
Sbjct: 31 TETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 90
Query: 96 KPGERRPS 103
G +
Sbjct: 91 MGGISITN 98
Score = 53.5 bits (128), Expect = 3e-10
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 41 ARMEVEDLFIDLADGKKLLKLLEIISGEKLGKP--------NNGKMRVHKVENVNKSLAF 92
+ D F +L DG LL+ + I+ + + MR VEN N ++
Sbjct: 291 VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDL 350
Query: 93 LHTK 96
+
Sbjct: 351 GKNQ 354
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 54.2 bits (130), Expect = 2e-11
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHTKPG 98
+ DL+ DL DG L+ LLE++SG+ L + G+MR HK++NV +L +L +
Sbjct: 28 RHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHRQV 82
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 50.0 bits (119), Expect = 7e-10
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 29 KPYPNQIYSHFQAR--MEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENV 86
K + + + F +E+LF DL DG++LL LLE ++G+KL K G RVH + NV
Sbjct: 11 KTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNV 69
Query: 87 NKSLAFLHTK 96
NK+L L
Sbjct: 70 NKALRVLQNN 79
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 131
Score = 44.2 bits (104), Expect = 1e-07
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN---NGKMRVHKVENVNKSLAFLHTK 96
+DLF + DG L K++ + + + + EN+N +L
Sbjct: 31 PNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAI 87
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 36.9 bits (85), Expect = 1e-04
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 43 MEVEDLFIDLADGKKLLKLLEIISGEKLGKPN-NGKMRVHKVENVNKSLAFL 93
L +G L L++ +KL K + +++ +N+NK L F+
Sbjct: 29 GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFI 80
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 32.3 bits (73), Expect = 0.004
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 44 EVEDLFIDLADGKKLLKLLEIISGEKLGK-------PNNGKMRVHKVENVNKSLAFLHTK 96
++ + D+ D K LL I+ + + +G ++ L
Sbjct: 29 KINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKL 88
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 29.5 bits (66), Expect = 0.034
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 46 EDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKVENVNKSLAFLHT 95
++ L DG L +L+ + + K N+ HK+EN+ L +
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKH 71
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing
protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 23.1 bits (49), Expect = 6.8
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 6 RMEVEDLFIDLADGTFFFLFFKSKP------YPNQIYSHFQARMEVEDLFIDLADGKKLL 59
R + E+L G+F S HF ++ + F+ +
Sbjct: 18 REDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHT 77
Query: 60 KLLEIIS 66
L +++
Sbjct: 78 SLDALVT 84
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 304
Score = 23.5 bits (50), Expect = 7.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 42 RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKV 83
R+ D F+ DG LL + I E+ PN +R V
Sbjct: 38 RLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDV 79
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
(Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]}
Length = 306
Score = 23.1 bits (49), Expect = 8.3
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 42 RMEVEDLFIDLADGKKLLKLLEIISGEKLGKPNNGKMRVHKV 83
R+ D F++ D LL I EK PN R V
Sbjct: 39 RLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNV 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.401
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,887
Number of extensions: 17343
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 24
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)