BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10626
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A
Ph Domain
pdb|1MPH|A Chain A, Pleckstrin Homology Domain From Mouse Beta-Spectrin, Nmr,
50 Structures
Length = 106
Score = 80.9 bits (198), Expect = 9e-16, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS--PIIIFK 108
++G L RKHE ++ KKA+ RSW ++Y V+ Q + F+KD + S P+ + +
Sbjct: 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60
Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
A CE A DY K+KHVF+L +DG+E+LF A + M W+ IS
Sbjct: 61 AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS------- 102
+++G+L RK E+++ GKKAA RSW+++Y VL L F+KD +KAA++
Sbjct: 9 QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKD------AKAASAGVPYHGE 62
Query: 103 -PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
P+ + +A+ A DY KRKHVF+L DG E+LF A E M W+ ++ PS
Sbjct: 63 VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121
>pdb|1DRO|A Chain A, Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTION
Protein
Length = 122
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK--- 108
+G + RKHE S KKA+ RSW +Y + F+KDQ + ++P + F+
Sbjct: 11 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGY-----KSNPELTFRGEP 65
Query: 109 ------ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
A E A DYTK+KHV R+ +G+ FL A +T M WV +
Sbjct: 66 SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSL 114
>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|N Chain N, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|O Chain O, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|P Chain P, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|Q Chain Q, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|R Chain R, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 168
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 52 QGVLERKHELQSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKA 109
+G L + + GK+ ++R WK +Y VL G L +KD+ + PI +
Sbjct: 6 EGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNAC 65
Query: 110 RCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
+ + TKRK+VFRL +D E LF A M W+ I + L
Sbjct: 66 LIDISYSETKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESSNL 112
>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase
Activating Protein 21 From Human
Length = 125
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 68 AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY 127
++R WK +Y VL G L +KD+ + PI + + + TKRK+VFRL
Sbjct: 30 GSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLT 89
Query: 128 CTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
+D E LF A M W+ I + L
Sbjct: 90 TSD-CECLFQAEDRDDMLAWIKTIQESSNL 118
>pdb|3PP2|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
pdb|3PP2|B Chain B, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
Length = 124
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 53 GVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA------SKAATSPIII 106
GVL R + GK+ + W + +TVL G +L FFKD A SK +T P
Sbjct: 12 GVLHRT-KTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFST-PEYT 69
Query: 107 FKARCEKAG----DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
+ R D + RK+V L DGSE+L SE ++ W I+
Sbjct: 70 VELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119
>pdb|3A8P|A Chain A, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|B Chain B, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|C Chain C, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|D Chain D, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8Q|A Chain A, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|B Chain B, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|C Chain C, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|D Chain D, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
P V +Q ERK EL A R WK + L G L F++ + + +
Sbjct: 21 PLVTLQK--ERKLEL------VARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCAL 72
Query: 107 FK--ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
F + + ++ K++HVF L + G +LF A S+T +E+WV I
Sbjct: 73 FAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAI 119
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 68 AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY 127
+ V+ W + VL + L ++KD+ + S + P++ F+ + D RKH F+
Sbjct: 34 SGVKQWNKRWFVLVDRCLFYYKDEKE--ESILGSIPLLSFRVAAVQPSDNISRKHTFKAE 91
Query: 128 CTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
+ F A S E W+ + A++
Sbjct: 92 HAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 68 AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLY 127
+ V+ W + VL + L ++KD+ + S + P++ F+ + D RKH F+
Sbjct: 23 SGVKQWNKRWFVLVDRCLFYYKDEKE--ESILGSIPLLSFRVAAVQPSDNISRKHTFKAE 80
Query: 128 CTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
+ F A S E W+ + A++
Sbjct: 81 HAGVRTYFFSAESPEEQEAWIQAMGEAARV 110
>pdb|2L22|A Chain A, Mupirocin Didomain Acp
Length = 212
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 112 EKAGDYTKRKHVFRLYCT-----DGSEFLFLAPSETLMEDWVNKISFHAQLP-PSLQLLS 165
++ + ++ LYC DGS FL L + W+ +I+ H QL P+ + +
Sbjct: 25 DECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYT 84
Query: 166 YDDSQKVSQYTGTTIQEKKKTS 187
Y + +Q+ GT +Q + T+
Sbjct: 85 YPVFKAFTQWVGTQLQPTQATA 106
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC---EKAGDYTKRKH 122
+++ V++W+ Y VL Q L ++KD++D P K E+AG K
Sbjct: 17 QRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG-----KF 71
Query: 123 VFRLYCTDGSE-------FLFLAPSETLMEDWVNKISFHAQLPPS 160
VF + + ++ +A S+ ME+WV + A PS
Sbjct: 72 VFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116
>pdb|3A8N|A Chain A, Crystal Structure Of The Tiam1 Phccex Domain
Length = 279
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 68 AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP---IIIFKARCEKAGDYTKRKHVF 124
A R WK + L G L FF + D + P + + + + ++ K+ VF
Sbjct: 34 ATRRKWKHYWVSLKGCTL-FFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVF 92
Query: 125 RLYCTDGSEFLFLAPSETLMEDWVNKI 151
L + G FLF S+T +E+W+ I
Sbjct: 93 CLSNSLGDAFLFQTTSQTELENWITAI 119
>pdb|1WG7|A Chain A, Solution Structure Of Pleckstrin Homology Domain From
Human Kiaa1058 Protein
Length = 150
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 120 RKHVFRLYCTDGSEFLFLAPSETLMEDWV---NKI---SFHAQLPPSLQLLSYDDSQ 170
R+ F L D S +L A SE ME+W+ NKI +F A + S++D +
Sbjct: 88 RRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHEDDE 144
>pdb|3HW2|B Chain B, Crystal Structure Of The Sifa-skip(ph) Complex
Length = 105
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
+G+L K GK+ WK+ + VL +L + D+ D + P++
Sbjct: 5 EGMLHYKAGTSYLGKE----HWKTCFVVLSNGILYQYPDRTDVI-------PLLSVNMGG 53
Query: 112 EKAG-----DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
E+ G + T R H F++ +D A SE M +W+ +
Sbjct: 54 EQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHL 98
>pdb|3CXB|B Chain B, Crystal Structure Of Sifa And Skip
Length = 112
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
+G+L K GK+ WK+ + VL +L + D+ D + P++
Sbjct: 3 EGMLHYKAGTSYLGKE----HWKTCFVVLSNGILYQYPDRTDVI-------PLLSVNMGG 51
Query: 112 EKAG-----DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
E+ G + T R H F++ +D A SE M +W+ +
Sbjct: 52 EQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHL 96
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 46 LPPVE---IQGVLERKHELQSGGKKAAVRSWKSLY 77
LPP E + G R+HE QS ++R WK Y
Sbjct: 325 LPPSEWPDVDGGAARRHESQSASAPKSIRVWKERY 359
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
K + +WK ++ VL + F+K + D + C+ D+ KR VF+
Sbjct: 14 KGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ---DFGKRMFVFK 70
Query: 126 LYCTDGSEFLFLAPSETLMEDWVNKIS 152
+ T + F A + WV I+
Sbjct: 71 ITTTKQQDHFFQAAFLEERDAWVRDIN 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,925,200
Number of Sequences: 62578
Number of extensions: 328619
Number of successful extensions: 492
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 19
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)