Query psy10626
Match_columns 344
No_of_seqs 158 out of 881
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 23:19:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15410 PH_9: Pleckstrin homo 99.9 3.9E-27 8.6E-32 198.6 12.1 107 50-156 1-119 (119)
2 cd01230 PH_EFA6 EFA6 Pleckstri 99.9 2.4E-26 5.2E-31 195.1 12.2 108 50-157 1-113 (117)
3 cd01253 PH_beta_spectrin Beta- 99.9 2.4E-23 5.2E-28 169.4 12.4 104 51-154 1-104 (104)
4 cd01260 PH_CNK Connector enhan 99.8 6.7E-19 1.4E-23 141.3 11.2 95 51-154 2-96 (96)
5 cd01233 Unc104 Unc-104 pleckst 99.8 8.3E-18 1.8E-22 137.5 11.7 94 49-155 2-98 (100)
6 KOG0932|consensus 99.7 1.2E-18 2.5E-23 178.4 3.0 114 43-156 500-618 (774)
7 cd01246 PH_oxysterol_bp Oxyste 99.7 2.3E-16 5.1E-21 122.8 11.5 91 51-154 1-91 (91)
8 cd01250 PH_centaurin Centaurin 99.7 2E-16 4.3E-21 123.9 10.6 93 51-153 1-93 (94)
9 cd01252 PH_cytohesin Cytohesin 99.7 2.6E-16 5.5E-21 132.9 11.6 94 50-156 1-114 (125)
10 cd01257 PH_IRS Insulin recepto 99.7 3E-16 6.5E-21 130.2 11.6 93 48-153 1-100 (101)
11 cd01251 PH_centaurin_alpha Cen 99.7 4.7E-16 1E-20 128.2 11.4 94 51-156 1-101 (103)
12 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 4.4E-16 9.5E-21 126.6 10.9 90 52-154 2-93 (95)
13 PF00169 PH: PH domain; Inter 99.7 1.3E-15 2.8E-20 117.9 12.7 98 49-155 1-103 (104)
14 cd01264 PH_melted Melted pleck 99.7 5.2E-16 1.1E-20 129.2 10.7 95 51-154 2-100 (101)
15 cd01238 PH_Tec Tec pleckstrin 99.7 9.5E-16 2.1E-20 127.0 10.9 97 50-153 1-105 (106)
16 cd01247 PH_GPBP Goodpasture an 99.6 3E-15 6.4E-20 121.4 11.1 90 51-153 1-90 (91)
17 cd01236 PH_outspread Outspread 99.6 3E-15 6.5E-20 125.0 10.5 93 51-152 1-101 (104)
18 cd01235 PH_SETbf Set binding f 99.6 1E-14 2.2E-19 117.0 11.6 91 51-154 1-100 (101)
19 cd01266 PH_Gab Gab (Grb2-assoc 99.6 5.5E-15 1.2E-19 122.2 10.3 95 51-154 1-107 (108)
20 cd01241 PH_Akt Akt pleckstrin 99.6 2.9E-14 6.4E-19 117.2 11.2 97 49-155 1-102 (102)
21 cd01263 PH_anillin Anillin Ple 99.5 6.6E-14 1.4E-18 120.1 9.4 99 49-154 1-122 (122)
22 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 2.2E-13 4.8E-18 112.6 11.0 84 64-154 13-98 (98)
23 smart00233 PH Pleckstrin homol 99.5 9.6E-13 2.1E-17 99.4 12.9 98 50-155 2-101 (102)
24 cd01245 PH_RasGAP_CG5898 RAS G 99.4 3.8E-13 8.1E-18 111.4 8.5 90 52-153 2-97 (98)
25 cd00821 PH Pleckstrin homology 99.4 4.5E-12 9.7E-17 95.0 9.6 96 51-154 1-96 (96)
26 cd01237 Unc112 Unc-112 pleckst 99.3 6.9E-12 1.5E-16 105.5 9.7 89 66-156 13-104 (106)
27 cd00900 PH-like Pleckstrin hom 99.3 8.2E-11 1.8E-15 88.8 11.1 95 52-154 2-99 (99)
28 cd01254 PH_PLD Phospholipase D 99.2 5.1E-11 1.1E-15 101.2 10.6 95 51-154 1-121 (121)
29 cd01219 PH_FGD FGD (faciogenit 99.2 1.1E-10 2.3E-15 96.0 11.2 97 49-155 2-99 (101)
30 PF15413 PH_11: Pleckstrin hom 99.1 8.7E-10 1.9E-14 92.5 9.9 96 51-154 1-112 (112)
31 PF15409 PH_8: Pleckstrin homo 99.1 9.7E-10 2.1E-14 90.0 9.6 86 53-154 1-88 (89)
32 KOG0930|consensus 99.0 1.3E-09 2.8E-14 105.6 9.5 98 49-158 260-378 (395)
33 cd01256 PH_dynamin Dynamin ple 98.9 1.3E-08 2.8E-13 85.3 10.6 97 49-156 1-106 (110)
34 cd01220 PH_CDEP Chondrocyte-de 98.9 3.2E-08 6.9E-13 81.9 11.2 97 49-156 2-98 (99)
35 KOG4407|consensus 98.8 2.3E-10 4.9E-15 125.9 -4.0 141 19-159 876-1045(1973)
36 cd01242 PH_ROK Rok (Rho- assoc 98.6 3.6E-07 7.8E-12 77.7 11.1 97 51-153 2-108 (112)
37 KOG0517|consensus 98.6 1.8E-10 3.8E-15 129.8 -11.9 107 49-155 2299-2409(2473)
38 cd01249 PH_oligophrenin Oligop 98.6 3.5E-07 7.5E-12 77.0 9.2 95 51-152 1-102 (104)
39 cd01243 PH_MRCK MRCK (myotonic 98.4 2.2E-06 4.8E-11 74.0 11.0 99 50-154 3-118 (122)
40 cd01234 PH_CADPS CADPS (Ca2+-d 98.4 7.4E-07 1.6E-11 75.5 6.6 95 50-157 3-112 (117)
41 KOG0690|consensus 98.4 2.9E-07 6.4E-12 91.7 4.5 99 48-156 14-117 (516)
42 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 8.4E-07 1.8E-11 75.7 6.3 95 51-154 2-107 (114)
43 cd01231 PH_Lnk LNK-family Plec 98.3 2.5E-06 5.4E-11 71.8 7.1 83 70-153 18-106 (107)
44 cd01258 PH_syntrophin Syntroph 98.2 4.8E-06 1E-10 70.6 8.4 98 52-153 2-107 (108)
45 KOG3640|consensus 98.2 1.5E-06 3.3E-11 94.4 6.5 102 47-155 988-1106(1116)
46 cd01218 PH_phafin2 Phafin2 Pl 98.2 1.6E-05 3.4E-10 66.8 11.2 96 49-156 4-99 (104)
47 PTZ00267 NIMA-related protein 98.1 7.7E-06 1.7E-10 82.6 8.0 99 48-157 376-478 (478)
48 cd01261 PH_SOS Son of Sevenles 98.0 5.6E-05 1.2E-09 64.3 10.2 99 49-155 4-109 (112)
49 cd01239 PH_PKD Protein kinase 98.0 5.7E-05 1.2E-09 64.9 9.2 91 51-154 2-117 (117)
50 KOG2059|consensus 97.9 1.6E-05 3.4E-10 84.8 6.8 102 48-159 564-668 (800)
51 KOG1451|consensus 97.8 5.5E-05 1.2E-09 79.6 7.1 151 46-205 262-416 (812)
52 KOG1090|consensus 97.7 1.8E-05 4E-10 86.8 2.4 91 51-154 1636-1730(1732)
53 KOG3751|consensus 97.6 9.7E-05 2.1E-09 76.9 5.9 100 46-154 314-423 (622)
54 PTZ00283 serine/threonine prot 97.6 0.00026 5.6E-09 72.5 8.5 47 113-159 445-493 (496)
55 KOG0521|consensus 97.5 3.8E-05 8.3E-10 83.6 2.4 95 49-155 274-368 (785)
56 KOG3531|consensus 97.4 5.1E-05 1.1E-09 82.2 0.8 92 52-156 927-1020(1036)
57 cd01221 PH_ephexin Ephexin Ple 97.1 0.0029 6.3E-08 55.0 8.9 80 73-152 27-119 (125)
58 cd01224 PH_Collybistin Collybi 97.1 0.0081 1.8E-07 51.2 10.8 82 71-152 15-104 (109)
59 PLN00188 enhanced disease resi 97.0 0.0026 5.7E-08 68.7 9.3 102 48-156 3-110 (719)
60 PLN02866 phospholipase D 97.0 0.0054 1.2E-07 68.7 11.5 106 45-155 178-307 (1068)
61 PF14593 PH_3: PH domain; PDB: 97.0 0.0081 1.8E-07 50.6 9.9 88 46-155 10-99 (104)
62 cd01225 PH_Cool_Pix Cool (clon 96.9 0.011 2.3E-07 50.7 10.2 101 45-154 8-108 (111)
63 KOG1117|consensus 96.8 0.00068 1.5E-08 74.0 2.9 140 70-217 628-768 (1186)
64 KOG3723|consensus 96.6 0.00065 1.4E-08 71.7 0.9 99 49-156 735-837 (851)
65 cd04388 RhoGAP_p85 RhoGAP_p85: 96.5 0.00073 1.6E-08 62.7 0.4 43 175-217 13-55 (200)
66 cd01222 PH_clg Clg (common-sit 96.2 0.079 1.7E-06 44.1 10.7 92 47-155 2-95 (97)
67 cd01240 PH_beta-ARK Beta adren 96.0 0.0084 1.8E-07 51.4 4.1 96 48-156 2-99 (116)
68 PF15408 PH_7: Pleckstrin homo 95.9 0.0028 6.1E-08 52.5 0.9 88 52-154 1-96 (104)
69 KOG1738|consensus 95.9 0.0012 2.7E-08 69.9 -1.6 74 44-126 557-630 (638)
70 KOG3549|consensus 95.8 0.014 2.9E-07 59.0 5.2 105 47-156 279-387 (505)
71 KOG1117|consensus 95.7 0.023 4.9E-07 62.7 6.8 81 71-155 516-601 (1186)
72 cd04382 RhoGAP_MgcRacGAP RhoGA 95.7 0.0034 7.3E-08 57.5 0.4 50 168-217 8-58 (193)
73 cd04390 RhoGAP_ARHGAP22_24_25 95.5 0.0032 6.9E-08 57.4 -0.2 44 175-218 20-64 (199)
74 cd04383 RhoGAP_srGAP RhoGAP_sr 95.5 0.0026 5.7E-08 57.8 -1.0 45 174-218 15-60 (188)
75 cd01232 PH_TRIO Trio pleckstri 95.3 0.34 7.4E-06 41.4 11.3 103 46-155 2-112 (114)
76 cd04408 RhoGAP_GMIP RhoGAP_GMI 95.2 0.0055 1.2E-07 56.3 0.1 43 175-217 14-57 (200)
77 cd01226 PH_exo84 Exocyst compl 95.2 0.15 3.2E-06 43.0 8.6 79 74-155 20-98 (100)
78 cd04372 RhoGAP_chimaerin RhoGA 95.2 0.0043 9.2E-08 56.5 -0.6 44 175-218 14-58 (194)
79 cd01223 PH_Vav Vav pleckstrin 95.0 0.12 2.7E-06 44.6 7.9 82 74-155 21-111 (116)
80 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 95.0 0.0087 1.9E-07 55.4 0.9 47 173-219 5-52 (206)
81 cd04379 RhoGAP_SYD1 RhoGAP_SYD 95.0 0.0075 1.6E-07 56.0 0.4 45 174-218 15-60 (207)
82 PF15406 PH_6: Pleckstrin homo 94.9 0.066 1.4E-06 45.9 5.8 69 76-152 42-110 (112)
83 cd04409 RhoGAP_PARG1 RhoGAP_PA 94.9 0.0056 1.2E-07 56.7 -0.7 43 175-217 14-57 (211)
84 cd04381 RhoGap_RalBP1 RhoGap_R 94.8 0.011 2.3E-07 53.5 0.8 45 175-219 18-63 (182)
85 KOG0248|consensus 94.6 0.027 5.8E-07 60.9 3.2 81 69-156 261-342 (936)
86 KOG3523|consensus 94.4 0.051 1.1E-06 58.0 4.7 108 45-152 465-591 (695)
87 cd04407 RhoGAP_myosin_IXB RhoG 94.3 0.014 3.1E-07 53.0 0.4 43 175-217 13-56 (186)
88 cd04378 RhoGAP_GMIP_PARG1 RhoG 94.2 0.01 2.2E-07 54.5 -0.8 43 175-217 14-57 (203)
89 cd04396 RhoGAP_fSAC7_BAG7 RhoG 94.0 0.018 3.9E-07 53.8 0.5 43 175-217 30-73 (225)
90 KOG4424|consensus 93.8 0.1 2.2E-06 55.5 5.6 99 47-156 270-370 (623)
91 cd04406 RhoGAP_myosin_IXA RhoG 93.8 0.019 4.1E-07 52.2 0.1 43 175-217 13-56 (186)
92 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 93.7 0.013 2.8E-07 53.9 -1.0 43 175-217 14-57 (196)
93 cd01262 PH_PDK1 3-Phosphoinosi 93.5 0.57 1.2E-05 38.8 8.3 85 49-155 1-88 (89)
94 cd04397 RhoGAP_fLRG1 RhoGAP_fL 93.2 0.026 5.7E-07 52.2 0.1 44 175-218 25-69 (213)
95 KOG3543|consensus 92.9 0.035 7.6E-07 59.7 0.6 94 50-156 465-566 (1218)
96 KOG2070|consensus 92.9 1.8 3.9E-05 45.9 12.8 81 74-155 326-406 (661)
97 cd04373 RhoGAP_p190 RhoGAP_p19 92.6 0.046 1E-06 49.5 0.9 43 175-217 13-56 (185)
98 cd04403 RhoGAP_ARHGAP27_15_12_ 92.4 0.049 1.1E-06 49.3 0.7 44 175-218 14-58 (187)
99 KOG1739|consensus 92.2 0.22 4.8E-06 52.2 5.3 94 47-154 22-115 (611)
100 PF15411 PH_10: Pleckstrin hom 92.0 2.7 5.8E-05 36.1 10.8 96 46-151 4-116 (116)
101 cd04385 RhoGAP_ARAP RhoGAP_ARA 91.8 0.051 1.1E-06 49.1 0.1 43 175-217 13-56 (184)
102 cd04386 RhoGAP_nadrin RhoGAP_n 91.8 0.036 7.7E-07 50.7 -0.9 43 175-217 18-61 (203)
103 cd04391 RhoGAP_ARHGAP18 RhoGAP 91.7 0.054 1.2E-06 50.2 0.1 43 175-217 20-63 (216)
104 cd04374 RhoGAP_Graf RhoGAP_Gra 91.4 0.052 1.1E-06 50.2 -0.2 42 175-216 26-68 (203)
105 cd04375 RhoGAP_DLC1 RhoGAP_DLC 91.3 0.064 1.4E-06 50.1 0.2 43 175-217 18-61 (220)
106 cd04384 RhoGAP_CdGAP RhoGAP_Cd 91.2 0.055 1.2E-06 49.6 -0.3 45 175-220 16-61 (195)
107 cd04395 RhoGAP_ARHGAP21 RhoGAP 91.0 0.081 1.7E-06 48.2 0.6 44 175-218 16-60 (196)
108 cd04398 RhoGAP_fRGD1 RhoGAP_fR 91.0 0.053 1.1E-06 48.9 -0.6 44 175-218 14-58 (192)
109 PF12814 Mcp5_PH: Meiotic cell 90.5 5.9 0.00013 33.8 11.5 85 70-155 27-121 (123)
110 cd04380 RhoGAP_OCRL1 RhoGAP_OC 89.6 0.14 3.1E-06 47.6 1.0 45 173-217 46-95 (220)
111 cd01228 PH_BCR-related BCR (br 89.1 1.6 3.5E-05 36.7 6.8 88 49-154 3-93 (96)
112 cd04400 RhoGAP_fBEM3 RhoGAP_fB 88.7 0.13 2.9E-06 46.5 0.1 44 175-218 20-65 (190)
113 cd04377 RhoGAP_myosin_IX RhoGA 88.6 0.14 3.1E-06 46.3 0.2 43 175-217 13-56 (186)
114 cd04392 RhoGAP_ARHGAP19 RhoGAP 88.5 0.15 3.2E-06 47.3 0.3 39 179-218 11-50 (208)
115 cd04389 RhoGAP_KIAA1688 RhoGAP 88.4 0.16 3.5E-06 46.2 0.4 43 175-217 19-63 (187)
116 cd04402 RhoGAP_ARHGAP20 RhoGAP 88.3 0.15 3.3E-06 46.3 0.1 43 175-217 13-56 (192)
117 cd04393 RhoGAP_FAM13A1a RhoGAP 87.8 0.16 3.4E-06 46.0 -0.0 43 175-217 18-61 (189)
118 cd04404 RhoGAP-p50rhoGAP RhoGA 87.8 0.16 3.4E-06 46.1 -0.0 43 175-217 21-64 (195)
119 cd01227 PH_Dbs Dbs (DBL's big 87.6 3.4 7.3E-05 36.4 8.1 80 74-155 30-115 (133)
120 cd04394 RhoGAP-ARHGAP11A RhoGA 87.3 0.25 5.3E-06 45.5 0.9 43 175-218 18-61 (202)
121 cd00159 RhoGAP RhoGAP: GTPase- 87.2 0.21 4.6E-06 42.7 0.4 43 178-220 1-44 (169)
122 PF15404 PH_4: Pleckstrin homo 85.6 0.93 2E-05 42.0 3.7 34 51-92 1-34 (185)
123 KOG4269|consensus 82.8 0.36 7.7E-06 53.8 -0.3 43 175-217 917-961 (1112)
124 KOG1737|consensus 82.2 1.5 3.2E-05 48.7 4.1 154 47-217 75-236 (799)
125 PF15405 PH_5: Pleckstrin homo 81.6 15 0.00032 32.2 9.4 37 118-154 96-134 (135)
126 smart00324 RhoGAP GTPase-activ 81.4 0.53 1.2E-05 41.1 0.3 44 177-220 3-47 (174)
127 KOG1264|consensus 81.2 2.1 4.7E-05 47.8 4.8 54 104-157 856-912 (1267)
128 PF00620 RhoGAP: RhoGAP domain 81.1 0.36 7.8E-06 40.9 -0.8 42 178-219 1-43 (151)
129 KOG3551|consensus 79.2 1.6 3.4E-05 45.2 2.8 102 45-152 288-398 (506)
130 KOG3564|consensus 74.3 0.88 1.9E-05 47.9 -0.4 51 167-217 352-403 (604)
131 cd04399 RhoGAP_fRGD2 RhoGAP_fR 72.1 1.2 2.6E-05 41.4 -0.0 46 175-220 14-66 (212)
132 KOG4807|consensus 70.6 0.04 8.7E-07 56.4 -10.8 81 70-154 32-113 (593)
133 KOG4047|consensus 70.1 3 6.5E-05 43.3 2.3 99 48-154 7-116 (429)
134 KOG4424|consensus 69.4 5.1 0.00011 43.1 3.8 82 70-156 510-596 (623)
135 KOG1450|consensus 69.1 4 8.8E-05 44.4 3.1 95 121-216 409-512 (650)
136 KOG3727|consensus 62.6 1.6 3.4E-05 46.8 -1.5 80 71-156 377-459 (664)
137 KOG0705|consensus 55.2 8.1 0.00018 41.9 2.3 31 123-153 447-477 (749)
138 KOG4236|consensus 53.0 20 0.00043 39.1 4.7 94 48-155 412-523 (888)
139 KOG0248|consensus 52.3 12 0.00026 41.3 3.0 75 69-153 271-346 (936)
140 KOG3521|consensus 52.1 19 0.00041 39.7 4.4 95 49-156 427-527 (846)
141 KOG2710|consensus 51.8 4.2 9E-05 42.1 -0.5 43 176-218 93-136 (412)
142 cd01248 PH_PLC Phospholipase C 48.9 37 0.0008 28.2 4.9 34 120-153 78-114 (115)
143 KOG4270|consensus 42.3 8.6 0.00019 41.5 0.1 145 70-221 50-212 (577)
144 cd01255 PH_TIAM TIAM Pleckstri 39.9 1.8E+02 0.004 26.5 8.0 82 74-155 50-154 (160)
145 KOG1450|consensus 35.8 32 0.0007 37.7 3.2 107 48-155 246-363 (650)
146 cd05134 RasGAP_RASA3 RASA3 (or 35.6 12 0.00026 37.4 -0.1 33 47-82 278-310 (310)
147 PF04714 BCL_N: BCL7, N-termin 35.2 19 0.00041 27.2 0.9 21 70-90 27-47 (52)
148 KOG4406|consensus 33.9 17 0.00038 37.9 0.8 42 175-216 269-312 (467)
149 cd05128 RasGAP_GAP1_like The G 33.6 12 0.00027 37.1 -0.4 32 46-81 283-315 (315)
150 cd05394 RasGAP_RASA2 RASA2 (or 33.3 9.2 0.0002 38.3 -1.3 34 46-82 280-313 (313)
151 PF14844 PH_BEACH: PH domain a 32.9 1.2E+02 0.0025 24.6 5.4 36 116-151 70-105 (106)
152 PF15277 Sec3-PIP2_bind: Exocy 32.9 2.3E+02 0.005 23.1 7.1 79 74-155 4-88 (91)
153 PF15404 PH_4: Pleckstrin homo 32.3 46 0.001 31.0 3.2 24 130-153 160-183 (185)
154 PF12480 DUF3699: Protein of u 31.3 90 0.002 25.0 4.3 35 118-152 23-62 (77)
155 KOG4095|consensus 29.9 23 0.00049 32.3 0.7 24 69-92 27-50 (165)
156 KOG0705|consensus 29.2 15 0.00032 40.0 -0.7 58 48-112 301-359 (749)
157 PF08458 PH_2: Plant pleckstri 28.4 1.4E+02 0.003 25.8 5.2 35 119-154 68-102 (110)
158 KOG1453|consensus 26.6 20 0.00042 40.7 -0.3 43 175-217 616-659 (918)
159 KOG1264|consensus 25.2 70 0.0015 36.5 3.5 35 48-90 474-508 (1267)
160 KOG3520|consensus 25.2 69 0.0015 37.4 3.6 54 101-156 667-722 (1167)
161 KOG4271|consensus 24.1 24 0.00053 40.2 -0.2 43 174-216 929-972 (1100)
162 KOG4407|consensus 22.2 32 0.0007 40.8 0.3 31 175-205 1172-1202(1973)
163 KOG3551|consensus 20.8 1.1E+02 0.0023 32.2 3.6 53 103-155 217-271 (506)
No 1
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.94 E-value=3.9e-27 Score=198.59 Aligned_cols=107 Identities=50% Similarity=0.800 Sum_probs=82.8
Q ss_pred EEEEEEeeeeeeccCCccc--cccCCceEEEEEeCCeEeEEecCchhhccc----------CCCccEEecccEEEecCCC
Q psy10626 50 EIQGVLERKHELQSGGKKA--AVRSWKSLYTVLCGQLLCFFKDQDDFVASK----------AATSPIIIFKARCEKAGDY 117 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs--~~RsWKkrwfVLrG~~L~fYKDeke~a~~~----------a~~~~IsL~ga~v~ia~dy 117 (344)
+|+|||.||++++.+|||. ..|+|+.+|+||+|+.|+||||+....... .+...|+|.+|.|+++.||
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 4899999999999999999 799999999999999999999966533221 1234599999999999999
Q ss_pred CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+||+|||+|+++||.+|||||.|++||++||.+||.+|+
T Consensus 81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~AA 119 (119)
T PF15410_consen 81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAAA 119 (119)
T ss_dssp TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH--
T ss_pred ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhcC
Confidence 999999999999999999999999999999999999885
No 2
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.94 E-value=2.4e-26 Score=195.13 Aligned_cols=108 Identities=34% Similarity=0.518 Sum_probs=98.2
Q ss_pred EEEEEEeeeeeeccCCcccc--ccCCceEEEEEeCCeEeEEecCchhhccc---CCCccEEecccEEEecCCCCCCcceE
Q psy10626 50 EIQGVLERKHELQSGGKKAA--VRSWKSLYTVLCGQLLCFFKDQDDFVASK---AATSPIIIFKARCEKAGDYTKRKHVF 124 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs~--~RsWKkrwfVLrG~~L~fYKDeke~a~~~---a~~~~IsL~ga~v~ia~dy~KRKnVF 124 (344)
+|+|+|.||++++.+|||+. .|.|+++||||+|+.|+||||+.....+. ....+|.|.+++|+++.+|.||+|||
T Consensus 1 ~~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF 80 (117)
T cd01230 1 YKHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVF 80 (117)
T ss_pred CCCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEE
Confidence 47999999999999999986 79999999999999999999997543332 23578999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626 125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157 (344)
Q Consensus 125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL 157 (344)
+|.+++|.+|||||.|++||+.||.+|+.+|++
T Consensus 81 ~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 81 RLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred EEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 3
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.90 E-value=2.4e-23 Score=169.35 Aligned_cols=104 Identities=52% Similarity=0.894 Sum_probs=92.0
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
++|+|.||++++.+|++...+.|+++||||+|+.|+||+|+...........+|+|.++.++++.++.+++|+|+|.+++
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~ 80 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPD 80 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecC
Confidence 47999999999999999999999999999999999999998754322222348899999999988888999999999999
Q ss_pred CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+.+|+|+|+|++||++||.+|+.|
T Consensus 81 ~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 81 GAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 999999999999999999999854
No 4
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.79 E-value=6.7e-19 Score=141.33 Aligned_cols=95 Identities=24% Similarity=0.393 Sum_probs=79.1
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
++|||.+|.. .+| ...+.|+++||||+++.|++|+++.+.. +.+.|.|.++.+..+.+ .+++++|+|.+++
T Consensus 2 ~~GwL~kk~~--~~g--~~~k~WkkrwfvL~~~~L~yyk~~~~~~----~~~~I~L~~~~v~~~~~-~~k~~~F~I~~~~ 72 (96)
T cd01260 2 CDGWLWKRKK--PGG--FMGQKWARRWFVLKGTTLYWYRSKQDEK----AEGLIFLSGFTIESAKE-VKKKYAFKVCHPV 72 (96)
T ss_pred ceeEEEEecC--CCC--ccccCceeEEEEEECCEEEEECCCCCCc----cceEEEccCCEEEEchh-cCCceEEEECCCC
Confidence 6899997652 111 1478999999999999999999987643 47889999988876544 4588999999998
Q ss_pred CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.+.|+|+|+|++||++||.+|+.|
T Consensus 73 ~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 73 YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 899999999999999999999864
No 5
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.75 E-value=8.3e-18 Score=137.47 Aligned_cols=94 Identities=24% Similarity=0.376 Sum_probs=77.3
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC---CCCcceEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY---TKRKHVFR 125 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy---~KRKnVFr 125 (344)
|.|+|||.+|.. ..+.|++|||||+++.|++|+++.+.. +.+.|+|..+.+....+. .+++|+|.
T Consensus 2 v~k~G~L~Kkg~--------~~k~WkkRwfvL~~~~L~yyk~~~~~~----~~~~I~L~~~~v~~~~~~~~~~~~~~~F~ 69 (100)
T cd01233 2 VSKKGYLNFPEE--------TNSGWTRRFVVVRRPYLHIYRSDKDPV----ERGVINLSTARVEHSEDQAAMVKGPNTFA 69 (100)
T ss_pred cceeEEEEeeCC--------CCCCcEEEEEEEECCEEEEEccCCCcc----EeeEEEecccEEEEccchhhhcCCCcEEE
Confidence 679999986541 358999999999999999999987643 367899998877655442 24789999
Q ss_pred EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
|.+++ +.|+|+|+|++||++||.+|+...
T Consensus 70 I~t~~-rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 70 VCTKH-RGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EECCC-CEEEEEcCCHHHHHHHHHHhhhhh
Confidence 99886 899999999999999999998543
No 6
>KOG0932|consensus
Probab=99.73 E-value=1.2e-18 Score=178.41 Aligned_cols=114 Identities=33% Similarity=0.515 Sum_probs=101.3
Q ss_pred cCCCCCeEEEEEEeeeeeeccCCcccc--ccCCceEEEEEeCCeEeEEecCchhhccc---CCCccEEecccEEEecCCC
Q psy10626 43 LDQLPPVEIQGVLERKHELQSGGKKAA--VRSWKSLYTVLCGQLLCFFKDQDDFVASK---AATSPIIIFKARCEKAGDY 117 (344)
Q Consensus 43 ~d~l~~V~KeGwL~RKq~lesgGKKs~--~RsWKkrwfVLrG~~L~fYKDeke~a~~~---a~~~~IsL~ga~v~ia~dy 117 (344)
.|....++|.|+|.||.+.+..|||.. .|.||..|.||+|..|||-||+....+.. ...+.|.|+|+.+..+.||
T Consensus 500 ~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY 579 (774)
T KOG0932|consen 500 PDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDY 579 (774)
T ss_pred CCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCccc
Confidence 355678999999999999999999885 68999999999999999999986543321 2356799999999999999
Q ss_pred CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 118 ~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+||.|||+|++.|+++|||||.+.+||+.||..||.+|+
T Consensus 580 ~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 580 SKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred ccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 7
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=2.3e-16 Score=122.81 Aligned_cols=91 Identities=18% Similarity=0.350 Sum_probs=74.5
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
++|||.++. ...+.|+++||||+++.|+||+++.... ..+.+.|.|.++.+... ..++++|+|.+++
T Consensus 1 ~~G~L~k~~--------~~~~~W~~r~~vl~~~~L~~~~~~~~~~--~~~~~~i~l~~~~~~~~---~~~~~~F~i~~~~ 67 (91)
T cd01246 1 VEGWLLKWT--------NYLKGWQKRWFVLDNGLLSYYKNKSSMR--GKPRGTILLSGAVISED---DSDDKCFTIDTGG 67 (91)
T ss_pred CeEEEEEec--------ccCCCceeeEEEEECCEEEEEecCccCC--CCceEEEEeceEEEEEC---CCCCcEEEEEcCC
Confidence 489998654 2358999999999999999999997641 12367789988876553 2347999999999
Q ss_pred CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+..|+|+|++.+|+++||.+|+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 8
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=2e-16 Score=123.90 Aligned_cols=93 Identities=23% Similarity=0.400 Sum_probs=74.5
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
|+|||.+|.. ...+.|+++||||+++.|++|+++.+.. ......|+|..+.+....+...++++|.|.+++
T Consensus 1 k~G~L~kk~~-------~~~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~ 71 (94)
T cd01250 1 KQGYLYKRSS-------KSNKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT 71 (94)
T ss_pred CcceEEEECC-------CcCCCceEEEEEEeCCeEEEEcCCcccc--cccceEEeccceEEecCccccCCceEEEEEcCC
Confidence 5899986541 1267899999999999999999987531 123467888877776655444478999999998
Q ss_pred CcEEEEECCCHHHHHHHHHHHHH
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
..|+|+|++++||++||.||+.
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999974
No 9
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=2.6e-16 Score=132.93 Aligned_cols=94 Identities=19% Similarity=0.395 Sum_probs=77.8
Q ss_pred EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeC
Q psy10626 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT 129 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tp 129 (344)
.|+|||.++. ...+.|+++||||+++.|+||+++.+.. +.+.|.|.++.+....+ ..++++|+|.++
T Consensus 1 ~k~G~L~K~~--------~~~~~WkkRwfvL~~~~L~yyk~~~~~~----~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~ 67 (125)
T cd01252 1 DREGWLLKQG--------GRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENVSIREVED-PSKPFCFELFSP 67 (125)
T ss_pred CcEEEEEEeC--------CCCCCeEeEEEEEECCEEEEEcCCCCCC----ceEEEECCCcEEEEccc-CCCCeeEEEECC
Confidence 3789998543 2368999999999999999999877543 47889999887766543 467899999987
Q ss_pred CC--------------------cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 130 DG--------------------SEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 130 dg--------------------~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
++ ..|+|+|++++||++||.+|+.+..
T Consensus 68 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 68 SDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred ccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 75 6899999999999999999998765
No 10
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.68 E-value=3e-16 Score=130.24 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=75.8
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC------eEeEEecCchhhcc-cCCCccEEecccEEEecCCCCCC
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ------LLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTKR 120 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~------~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~KR 120 (344)
+|.++|||. |+ ++|++|||||+++ .|.+|++++.+... ..+.+.|+|..|.........++
T Consensus 1 ~v~k~GyL~-K~-----------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~ 68 (101)
T cd01257 1 DVRKSGYLR-KQ-----------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKH 68 (101)
T ss_pred CccEEEEEe-Ee-----------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecccccc
Confidence 488999997 43 7999999999987 79999999864321 23578999999875433333566
Q ss_pred cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626 121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
+|+|.|.+++ +.|+|+|++++||++||.+|..
T Consensus 69 ~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 69 RHLIALYTRD-EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred CeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhh
Confidence 7999999998 7999999999999999999964
No 11
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.67 E-value=4.7e-16 Score=128.21 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=71.1
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE----EEe--cCC-CCCCcce
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR----CEK--AGD-YTKRKHV 123 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~----v~i--a~d-y~KRKnV 123 (344)
|+|||.++.. + ..++|++|||||+++.|+||++..+.. +.+.|+|..+. +.. ..+ ..++.++
T Consensus 1 KeG~L~K~g~-----~--~~k~wkkRwFvL~~~~L~Yyk~~~d~~----~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEGFMEKTGP-----K--HTEGFKKRWFTLDDRRLMYFKDPLDAF----AKGEVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred CceeEEecCC-----C--CCCCceeEEEEEeCCEEEEECCCCCcC----cCcEEEeeccccceeEeccCCccccccccce
Confidence 6899985431 1 258899999999999999999987643 36788886432 321 112 1223459
Q ss_pred EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
|.|.+++ ++|+|+|+|++||++||++|+.+..
T Consensus 70 F~i~t~~-Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVTPE-RKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEeCC-eEEEEECCCHHHHHHHHHHHHHHhc
Confidence 9999985 8999999999999999999998764
No 12
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.67 E-value=4.4e-16 Score=126.56 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=72.0
Q ss_pred EEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeC
Q psy10626 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT 129 (344)
Q Consensus 52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tp 129 (344)
+|||.+.. .+...++|+++||||+ ++.|+||+++.+.. +.+.|+|.++.+....+ .++++|.|.++
T Consensus 2 ~GyL~K~g------~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~----p~G~I~L~~~~~~~~~~--~~~~~F~i~t~ 69 (95)
T cd01265 2 CGYLHKIE------GKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK----PLGRVDLSGAAFTYDPR--EEKGRFEIHSN 69 (95)
T ss_pred cccEEEec------CCCCCcCceeEEEEEcCCCcEEEEECCCCccc----ccceEECCccEEEcCCC--CCCCEEEEEcC
Confidence 69998432 1234789999999998 46899999987643 47899999876654333 24789999987
Q ss_pred CCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 130 DGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 130 dg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+ ++|+|+|+|++||++||++|+.+
T Consensus 70 ~-r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 N-EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred C-cEEEEECCCHHHHHHHHHHHHhh
Confidence 5 89999999999999999999864
No 13
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.67 E-value=1.3e-15 Score=117.88 Aligned_cols=98 Identities=24% Similarity=0.408 Sum_probs=82.2
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC-----CCCcce
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-----TKRKHV 123 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-----~KRKnV 123 (344)
+.++|||.++. ...+.|+++||||.++.|++|++.... ....+...|+|.++.+....+. .+.+|+
T Consensus 1 ~~~~G~L~~~~--------~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~ 71 (104)
T PF00169_consen 1 CIKEGWLLKKS--------SSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNC 71 (104)
T ss_dssp EEEEEEEEEEE--------SSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSE
T ss_pred CEEEEEEEEEC--------CCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcE
Confidence 57899999664 247899999999999999999998741 1123467899999887766554 578999
Q ss_pred EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
|.|.++++..|+|+|+|++|+..||.+|+.+.
T Consensus 72 f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 72 FEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999998999999999999999999999775
No 14
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.66 E-value=5.2e-16 Score=129.15 Aligned_cols=95 Identities=25% Similarity=0.433 Sum_probs=74.2
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC-CC---CCcceEEE
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD-YT---KRKHVFRL 126 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d-y~---KRKnVFrL 126 (344)
.+|||..++ |+=-..++|++|||||+|+.|+|||+.....+ ..+.|+|..|......+ .. .++++|+|
T Consensus 2 ~~G~l~k~~-----g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~---~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei 73 (101)
T cd01264 2 IEGQLKEKK-----GRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP---DDCSIDLSKIRSVKAVAKKRRDRSLPKAFEI 73 (101)
T ss_pred cceEEeecC-----ccceeeecceeEEEEEeCCEEEEEeccCccCC---CCceEEcccceEEeeccccccccccCcEEEE
Confidence 589997553 22114799999999999999999998865432 24789999887443332 22 23699999
Q ss_pred EeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 127 YCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.+++ ++|+|+|+|++|+++||++|+.|
T Consensus 74 ~tp~-rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 74 FTAD-KTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EcCC-ceEEEEeCCHHHHHHHHHHHHhh
Confidence 9998 89999999999999999999865
No 15
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.65 E-value=9.5e-16 Score=127.00 Aligned_cols=97 Identities=19% Similarity=0.340 Sum_probs=74.5
Q ss_pred EEEEEEeeeeeeccCCcc-ccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEE-EecCCCC------CCc
Q psy10626 50 EIQGVLERKHELQSGGKK-AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC-EKAGDYT------KRK 121 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKK-s~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v-~ia~dy~------KRK 121 (344)
.++|+|.++. .|++ ...++|++|||||+++.|+||+++.+.. ..+.+.|+|.++.+ +.+.+.. +++
T Consensus 1 ~k~g~l~Kr~----~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~ 74 (106)
T cd01238 1 ILESILVKRS----QQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GSKKGSIDLSKIKCVETVKPEKNPPIPERFK 74 (106)
T ss_pred Ccceeeeeec----cCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cCcceeEECCcceEEEEecCCcCcccccccC
Confidence 3789999663 2333 3567999999999999999999886531 12478899987653 3333322 468
Q ss_pred ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626 122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
++|+|.+++ +.|+|+|+|++|+++||.+|+.
T Consensus 75 ~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 75 YPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred ccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 999999986 6888999999999999999985
No 16
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.63 E-value=3e-15 Score=121.35 Aligned_cols=90 Identities=17% Similarity=0.292 Sum_probs=73.5
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
.+|||.+.. ...++|++|||||+++.|+||+++.+... ...+.|+|.+|.+... + .+++.|.|.+.+
T Consensus 1 ~~G~L~K~~--------~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~~~G~I~L~~~~i~~~-~--~~~~~F~i~~~~ 67 (91)
T cd01247 1 TNGVLSKWT--------NYINGWQDRYFVLKEGNLSYYKSEAEKSH--GCRGSIFLKKAIIAAH-E--FDENRFDISVNE 67 (91)
T ss_pred CceEEEEec--------cccCCCceEEEEEECCEEEEEecCccCcC--CCcEEEECcccEEEcC-C--CCCCEEEEEeCC
Confidence 379998554 24799999999999999999999876321 3468899998865532 2 346899998888
Q ss_pred CcEEEEECCCHHHHHHHHHHHHH
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
+++|+|.|+|++|+++||++|+.
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 89999999999999999999985
No 17
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.62 E-value=3e-15 Score=125.01 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=72.6
Q ss_pred EEEEEeeeeeeccCCcc-----ccccCCceEEEEEe-CCeEeEEecCc-hhhcccCCCccEEecccEEEec-CCCCCCcc
Q psy10626 51 IQGVLERKHELQSGGKK-----AAVRSWKSLYTVLC-GQLLCFFKDQD-DFVASKAATSPIIIFKARCEKA-GDYTKRKH 122 (344)
Q Consensus 51 KeGwL~RKq~lesgGKK-----s~~RsWKkrwfVLr-G~~L~fYKDek-e~a~~~a~~~~IsL~ga~v~ia-~dy~KRKn 122 (344)
++|||.++. +|+. ...++|++|||||+ ++.|+||+|.. +.. +.+.|+|..|..... .+...++|
T Consensus 1 ~~g~l~~~~----~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~----p~G~IdL~~~~~V~~~~~~~~~~~ 72 (104)
T cd01236 1 YCGWLLVAP----DGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL----PQGTIDMNQCTDVVDAEARTGQKF 72 (104)
T ss_pred CcceeEEcC----CCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc----cceEEEccceEEEeecccccCCcc
Confidence 479998553 4443 24799999999998 67888888774 332 478899987764433 34455679
Q ss_pred eEEEEeCCCcEEEEECCCHHHHHHHHHHHH
Q psy10626 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152 (344)
Q Consensus 123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr 152 (344)
+|.|.+++ ++|+|.|++++||++||++|+
T Consensus 73 ~f~I~tp~-R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 73 SICILTPD-KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEEEECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 99999997 899999999999999999996
No 18
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.60 E-value=1e-14 Score=117.01 Aligned_cols=91 Identities=25% Similarity=0.366 Sum_probs=69.6
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeC--CeEeEEecCchhhcccCCCccEEecccEEE-ecCC------CCCCc
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCG--QLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGD------YTKRK 121 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG--~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~d------y~KRK 121 (344)
.+|||.++. ...++|++|||||.+ +.|+||+++.+.. +.+.|+|..+... ...+ ...+.
T Consensus 1 ~~G~L~K~g--------~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~----~~g~I~L~~~~~v~~~~~~~~~~~~~~~~ 68 (101)
T cd01235 1 CEGYLYKRG--------ALLKGWKPRWFVLDPDKHQLRYYDDFEDTA----EKGCIDLAEVKSVNLAQPGMGAPKHTSRK 68 (101)
T ss_pred CeEEEEEcC--------CCCCCccceEEEEECCCCEEEEecCCCCCc----cceEEEcceeEEEeecCCCCCCCCCCCCc
Confidence 379998653 247899999999994 5999999886543 4688999875432 2111 12456
Q ss_pred ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
++|.|.+. .+.|+|+|++++||++||.+|+.+
T Consensus 69 ~~f~i~t~-~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 69 GFFDLKTS-KRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred eEEEEEeC-CceEEEECCCHHHHHHHHHHHHhh
Confidence 78998875 489999999999999999999865
No 19
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.60 E-value=5.5e-15 Score=122.25 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=71.0
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCe-------EeEEecCchhhcccCCCccEEecccEEEec-----CCCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQL-------LCFFKDQDDFVASKAATSPIIIFKARCEKA-----GDYT 118 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~-------L~fYKDeke~a~~~a~~~~IsL~ga~v~ia-----~dy~ 118 (344)
.+|||.++... .+...++|++|||||+++. |+||+++.+.. +.+.|+|..+.+... ....
T Consensus 1 ~eGwL~K~~~~----~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k----~~g~I~L~~~~~v~~~~~~~~~~~ 72 (108)
T cd01266 1 LEGWLKKSPPY----KLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK----LEFVIDLESCSQVDPGLLCTAGNC 72 (108)
T ss_pred CceeeeeCCcc----ccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc----cceEEECCccEEEcccccccccCc
Confidence 37999854311 1224579999999999876 59999987543 478999998654321 1123
Q ss_pred CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+..++|.|.+++ ++|+|+|+|++||++||++|+..
T Consensus 73 ~~~~~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 73 IFGYGFDIETIV-RDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ccceEEEEEeCC-ccEEEEECCHHHHHHHHHHHHhh
Confidence 456789999875 89999999999999999999865
No 20
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.56 E-value=2.9e-14 Score=117.23 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=65.3
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhcc-cCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTKRKHVFRL 126 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~KRKnVFrL 126 (344)
|.|+|||.+++ ...+.|++|||||+ ++.|++|+++...... .-+...+.|.+|.+.. ....+.+.|.|
T Consensus 1 v~k~G~L~K~g--------~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~~~~F~i 70 (102)
T cd01241 1 VVKEGWLHKRG--------EYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMK--TERPRPNTFII 70 (102)
T ss_pred CcEEEEEEeec--------CCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeee--ccCCCcceEEE
Confidence 56999998654 25799999999999 7889989887643220 1112223333333322 22456799999
Q ss_pred EeCC-C--cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 127 YCTD-G--SEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 127 ~tpd-g--~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
...+ . ..-.|+|++++||++||.+|+.++
T Consensus 71 ~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 71 RCLQWTTVIERTFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred EeccCCcccCEEEEeCCHHHHHHHHHHHHhhC
Confidence 8433 1 223678999999999999998653
No 21
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.51 E-value=6.6e-14 Score=120.13 Aligned_cols=99 Identities=20% Similarity=0.320 Sum_probs=75.6
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec----CCCCCCcceE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA----GDYTKRKHVF 124 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia----~dy~KRKnVF 124 (344)
|...|||...+.. ...++|+++||||+|+.|+||+...+. ....+.+.|+|.+|.+... .+...|+|.|
T Consensus 1 ~~~~GfL~~~q~~------~~~k~W~RRWFvL~g~~L~y~k~p~d~-~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF 73 (122)
T cd01263 1 VEYHGFLTMFEDT------SGFGAWHRRWCALEGGEIKYWKYPDDE-KRKGPTGLIDLSTCTSSEGASAVRDICARPNTF 73 (122)
T ss_pred CccceeEEEEecc------CCCCCceEEEEEEeCCEEEEEcCCCcc-ccCCceEEEEhhhCcccccccCChhhcCCCCeE
Confidence 4567999876643 257999999999999999999966652 1234678899998775422 2568899999
Q ss_pred EEEeCC----------------C---cEEEEECCCHHHHHHHHHHHHHh
Q psy10626 125 RLYCTD----------------G---SEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 125 rL~tpd----------------g---~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.|.... . .-|+|+|++.+|+++||.+|+.+
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 74 HLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 997531 1 12899999999999999999853
No 22
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.49 E-value=2.2e-13 Score=112.56 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcceEEEEeCCCcEEEEECCCH
Q psy10626 64 GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHVFRLYCTDGSEFLFLAPSE 141 (344)
Q Consensus 64 gGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnVFrL~tpdg~eyLFqAeSe 141 (344)
+|++.. ++|++|||+|++..|+||++... .+.+.|+|....+.... +...++|+|+|.+++ ..|+|+|+++
T Consensus 13 ~~~~~~-~n~KkRwF~Lt~~~L~Y~k~~~~-----~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~ 85 (98)
T cd01244 13 LAWKKV-LHFKKRYFQLTTTHLSWAKDVQC-----KKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAP 85 (98)
T ss_pred CCCccC-cCCceeEEEECCCEEEEECCCCC-----ceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCH
Confidence 344544 89999999999999999998763 24788999876554322 234567999999997 6999999999
Q ss_pred HHHHHHHHHHHHh
Q psy10626 142 TLMEDWVNKISFH 154 (344)
Q Consensus 142 eEM~eWI~AIr~a 154 (344)
+|+++||.+|+.+
T Consensus 86 ~E~~~Wi~al~k~ 98 (98)
T cd01244 86 VEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999853
No 23
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.48 E-value=9.6e-13 Score=99.36 Aligned_cols=98 Identities=26% Similarity=0.379 Sum_probs=78.8
Q ss_pred EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCC--CCcceEEEE
Q psy10626 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYT--KRKHVFRLY 127 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~--KRKnVFrL~ 127 (344)
.++|||.++.. .....|+++||+|.++.|++|++..... .......|+|.++.+....+.. ..+++|.|.
T Consensus 2 ~~~G~l~~~~~-------~~~~~~~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 2 IKEGWLYKKSG-------GKKKSWKKRYFVLFNSTLLYYKSEKAKK-DYKPKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred ceeEEEEEeCC-------CccCCceEEEEEEECCEEEEEeCCCccc-cCCCceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 58999986541 1467899999999999999999886521 1234678899988776554432 568999999
Q ss_pred eCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 128 CTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 128 tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
+.++..|+|+|++++|++.|+.+|+.++
T Consensus 74 ~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 9998899999999999999999999775
No 24
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.44 E-value=3.8e-13 Score=111.45 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=72.1
Q ss_pred EEEEeeeeeeccCCccccccCCceEEEEEeC----CeEeEEecCchhhcccCCCccEEecccEEEecCCC-CCCcceEEE
Q psy10626 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCG----QLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-TKRKHVFRL 126 (344)
Q Consensus 52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG----~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-~KRKnVFrL 126 (344)
.|||.++. + ...+.|+++||+|.+ ++|+||++..+..+ .+.|+|..+.|....+. ..|+|+|+|
T Consensus 2 ~G~l~K~g------~-~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p----~gli~l~~~~V~~v~ds~~~r~~cFel 70 (98)
T cd01245 2 KGNLLKRT------K-SVTKLWKTLYFALILDGSRSHESLLSSPKKTKP----IGLIDLSDAYLYPVHDSLFGRPNCFQI 70 (98)
T ss_pred CCccccCC------C-CcccccceeEEEEecCCCCceEEEEcCCCCCCc----cceeeccccEEEEccccccCCCeEEEE
Confidence 57886332 1 227999999999987 99999999887543 67888888866654443 567899999
Q ss_pred EeCCC-cEEEEECCCHHHHHHHHHHHHH
Q psy10626 127 YCTDG-SEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 127 ~tpdg-~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
.++++ ..|+++|++ +|+++||++|+.
T Consensus 71 ~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 99886 799999999 999999999974
No 25
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=4.5e-12 Score=94.97 Aligned_cols=96 Identities=27% Similarity=0.447 Sum_probs=76.2
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
++|||.++.. .....|+++||+|.++.|++|++..... .......|+|.++.+....+..+..++|.|.+.+
T Consensus 1 ~~G~l~~~~~-------~~~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~ 72 (96)
T cd00821 1 KEGYLLKKTG-------KLRKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPD 72 (96)
T ss_pred CcchhhhhhC-------hhhCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECCCcCCCCcEEEEecCC
Confidence 4799986541 0147899999999999999998876521 1124678999987777665555678999999998
Q ss_pred CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+..|+|+|+|++|++.|+.+|+.+
T Consensus 73 ~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 73 GRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcC
Confidence 899999999999999999999753
No 26
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=6.9e-12 Score=105.53 Aligned_cols=89 Identities=12% Similarity=0.263 Sum_probs=69.0
Q ss_pred ccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC---CcEEEEECCCHH
Q psy10626 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD---GSEFLFLAPSET 142 (344)
Q Consensus 66 KKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd---g~eyLFqAeSee 142 (344)
+|...+.|+++||+|+++.|+|||+..+... .+...|.|.+|.+..+..-.++++.|+|.++. .++|.|.|+|++
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~--~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEe 90 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSNG--APIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEK 90 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcCC--CCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHH
Confidence 3556889999999999999999999876432 23344556676665544335678999998653 369999999999
Q ss_pred HHHHHHHHHHHhhC
Q psy10626 143 LMEDWVNKISFHAQ 156 (344)
Q Consensus 143 EM~eWI~AIr~aaa 156 (344)
++..||.+++.|+.
T Consensus 91 qya~Wmaa~rlas~ 104 (106)
T cd01237 91 QYAKWMAACRLASK 104 (106)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998874
No 27
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.26 E-value=8.2e-11 Score=88.83 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=72.9
Q ss_pred EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCC-ccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAAT-SPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~-~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
+|||.++... .......|+++||+|.++.|++|+++..... . ..+.|.+..|....+....+++|.|.+.+
T Consensus 2 ~g~l~~~~~~----~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~----~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~ 73 (99)
T cd00900 2 EGYLLKLGSD----DVSKGKRWKRRWFFLFDDGLLLYKSDDKKEI----KPGSIPLSEISVEEDPDGSDDPNCFAIVTKD 73 (99)
T ss_pred ccEEEEeCCC----ccccccCceeeEEEEECCEEEEEEcCCCCcC----CCCEEEccceEEEECCCCCCCCceEEEECCC
Confidence 6889765421 0112478999999999999999998876432 2 45777776665544433578999999996
Q ss_pred --CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 131 --GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 131 --g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
...|+|+|++++|++.|+.+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 899999999999999999999754
No 28
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=5.1e-11 Score=101.16 Aligned_cols=95 Identities=16% Similarity=0.376 Sum_probs=69.8
Q ss_pred EEEEEeeeeeeccCCcccc--------------ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-ccEEEecC
Q psy10626 51 IQGVLERKHELQSGGKKAA--------------VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF-KARCEKAG 115 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~--------------~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~-ga~v~ia~ 115 (344)
|||||.+|. +|++.. ...|+++||||+++.|.||++..+..+ .+.|.+. +..+....
T Consensus 1 keG~i~kr~----g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~----~~vil~D~~f~v~~~~ 72 (121)
T cd01254 1 KEGYIMKRS----GGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQI----LDVILFDVDFKVNGGG 72 (121)
T ss_pred CCceEEeCC----CCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCce----eeEEEEcCCccEEeCC
Confidence 589998664 333332 237999999999999999998877432 4455554 23233211
Q ss_pred -----------CCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 116 -----------DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 116 -----------dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+...+.|.|.|.+++ +.|.|.|+|+.++++||++|+.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~i~t~~-R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 73 KEDISLAVELKDITGLRHGLKITNSN-RSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccccccccccCCCceEEEEEcCC-cEEEEEeCCHHHHHHHHHHHHhC
Confidence 224567999999987 89999999999999999999864
No 29
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.23 E-value=1.1e-10 Score=95.99 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=73.1
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-cCCCccEEecccEEEecCCCCCCcceEEEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGDYTKRKHVFRLY 127 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~ 127 (344)
..++|||.+.+ ...+.|+.|||+|-++.|.+++........ ....+.|+|.++.+... +....+|.|.|.
T Consensus 2 ~ikeG~L~K~~--------~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~-~~~~~~~~F~I~ 72 (101)
T cd01219 2 LLKEGSVLKIS--------STTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG-DNLERPHSFLVS 72 (101)
T ss_pred cccceEEEEEe--------cCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC-CCCCcCceEEEe
Confidence 46899998433 235789999999999999999865321110 11234578888766532 335578999999
Q ss_pred eCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 128 CTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 128 tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
..+ +.|.|+|+|++|+++||.+|+.++
T Consensus 73 ~~~-rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 73 GKQ-RCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred cCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 887 899999999999999999999875
No 30
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.07 E-value=8.7e-10 Score=92.47 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=54.6
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhccc----C-----CCccEE--ecccEEE-e---c
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVASK----A-----ATSPII--IFKARCE-K---A 114 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~~----a-----~~~~Is--L~ga~v~-i---a 114 (344)
|+|||+++.. + ..+.|++|||+|. ++.|.|||......... . ..+.+. ....... + .
T Consensus 1 k~G~l~K~~~------~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
T PF15413_consen 1 KEGYLYKWGN------K-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKN 73 (112)
T ss_dssp EEEEEEE--T------T-S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T
T ss_pred CCceEEEecC------C-CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCC
Confidence 6899996541 1 2689999999999 99999999933321100 0 011111 1111111 1 1
Q ss_pred CCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 115 GDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 115 ~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
........+|.|.|++ ++|+|.|++.+|..+||.+|+.|
T Consensus 74 ~~~~~~~~~~~i~T~~-kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 74 PFGEIHLKVFSIFTPT-KTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp --SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred cccCcCCCCcEEECCC-cEEEEEECCHHHHHHHHHHHHhC
Confidence 1113345788998887 69999999999999999999865
No 31
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.07 E-value=9.7e-10 Score=89.95 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=67.8
Q ss_pred EEEeeeeeeccCCccccccCCceEEEEE--eCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCC
Q psy10626 53 GVLERKHELQSGGKKAAVRSWKSLYTVL--CGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130 (344)
Q Consensus 53 GwL~RKq~lesgGKKs~~RsWKkrwfVL--rG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpd 130 (344)
|||.+|. +-..+.|++||||| ..+.|.||+++.+.. .-+.|+|..+.+.+. ++...|.|.+.
T Consensus 1 G~llKkr-------r~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~----~rGsi~v~~a~is~~----~~~~~I~idsg- 64 (89)
T PF15409_consen 1 GWLLKKR-------RKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK----LRGSIDVSLAVISAN----KKSRRIDIDSG- 64 (89)
T ss_pred Ccceeec-------cccCCCceeEEEEEEcCCcEEEEEecCCCCe----eEeEEEccceEEEec----CCCCEEEEEcC-
Confidence 7787653 33579999999999 899999999887642 246788887776652 34457888765
Q ss_pred CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
...|.|-|.|++|.+.|+.+|+.|
T Consensus 65 ~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 65 DEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhc
Confidence 479999999999999999999865
No 32
>KOG0930|consensus
Probab=99.01 E-value=1.3e-09 Score=105.58 Aligned_cols=98 Identities=23% Similarity=0.406 Sum_probs=73.4
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC 128 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t 128 (344)
...+|||- |. +| ...+.||++||+|..++||||.--.+.. +-+.|.|..-.+... +..+|+++|+|-.
T Consensus 260 pdREGWLl-Kl----gg--~rvktWKrRWFiLtdNCLYYFe~tTDKE----PrGIIpLeNlsir~V-edP~kP~cfEly~ 327 (395)
T KOG0930|consen 260 PDREGWLL-KL----GG--NRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENLSIREV-EDPKKPNCFELYI 327 (395)
T ss_pred ccccceee-ee----cC--CcccchhheeEEeecceeeeeeeccCCC----CCcceeccccceeec-cCCCCCCeEEEec
Confidence 56899997 54 12 1478999999999999999997544332 367788865444433 3368899999876
Q ss_pred C--------------C-------CcEEEEECCCHHHHHHHHHHHHHhhCCC
Q psy10626 129 T--------------D-------GSEFLFLAPSETLMEDWVNKISFHAQLP 158 (344)
Q Consensus 129 p--------------d-------g~eyLFqAeSeeEM~eWI~AIr~aaaL~ 158 (344)
+ | ...|-++|.+.+||.+||++|+.+.+-.
T Consensus 328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 5 2 2579999999999999999999776533
No 33
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.91 E-value=1.3e-08 Score=85.30 Aligned_cols=97 Identities=18% Similarity=0.279 Sum_probs=74.6
Q ss_pred eEEEEEEeeeeeeccCCccccc-cCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE-ecCCCCCCcceEEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAV-RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDYTKRKHVFRL 126 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~-RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~dy~KRKnVFrL 126 (344)
|++.|||.-... +.+ ..=|.+||||+..+|++|||+.+..+ ...|+|.+..+. +..+..+++|+|.|
T Consensus 1 virkgwl~~~n~-------~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~gf~sk~~~FeL 69 (110)
T cd01256 1 VIRKGWLSISNV-------GIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEGGFMSRNHKFAL 69 (110)
T ss_pred CeeeeeEEeecc-------ceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecccccCCCcEEEE
Confidence 467899974331 122 23589999999999999999987543 567888875544 55567888899999
Q ss_pred EeCCC-------cEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 127 YCTDG-------SEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 127 ~tpdg-------~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
-.+++ ++.-|+|++++|++.|-..+-+|--
T Consensus 70 fnpd~rnvykd~k~lel~~~~~e~vdswkasflragv 106 (110)
T cd01256 70 FYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRAGV 106 (110)
T ss_pred EcCcccccccchheeeecCCCHHHHHHHHHHHHhccc
Confidence 98865 5678999999999999998876643
No 34
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.86 E-value=3.2e-08 Score=81.87 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=66.5
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC 128 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t 128 (344)
..+||+|.+.+ ....|.++||.+.+..||..+..... ......+.|+|.+..+....+....+|+|+|..
T Consensus 2 ~ikEG~L~K~~---------~k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~ 71 (99)
T cd01220 2 FIRQGCLLKLS---------KKGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEHEWGVPHCFTIFG 71 (99)
T ss_pred eeeEEEEEEEe---------CCCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccCCcCCceeEEEEc
Confidence 46899998432 22456766666666555554432111 001124678898887765555345689999997
Q ss_pred CCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 129 TDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 129 pdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+. +.|+|+|.|++|+.+||.+|+.++.
T Consensus 72 ~~-ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 72 GQ-CAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CC-eEEEEECCCHHHHHHHHHHHHHHhh
Confidence 75 7999999999999999999998763
No 35
>KOG4407|consensus
Probab=98.81 E-value=2.3e-10 Score=125.93 Aligned_cols=141 Identities=23% Similarity=0.202 Sum_probs=113.7
Q ss_pred CCCCC------Ccccccccchhhhhhhh----------hccC-CCCCeEEEEEEeeeeeeccCCcccc--ccCCceEEEE
Q psy10626 19 PKRTP------SFTTRRRTQSFRKLQKL----------EQLD-QLPPVEIQGVLERKHELQSGGKKAA--VRSWKSLYTV 79 (344)
Q Consensus 19 p~r~P------Sf~t~rr~~S~~~~~~~----------e~~d-~l~~V~KeGwL~RKq~lesgGKKs~--~RsWKkrwfV 79 (344)
++|++ +|..+.++++++.-++. |..+ -+....|+|||+.++....+||+.+ .+.|++.|.+
T Consensus 876 ~nRv~~~~a~rsfk~disLds~~i~~rh~~se~t~srsD~s~e~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~ 955 (1973)
T KOG4407|consen 876 HNRVDVCNAIRSFKYDISLDSSFIKQRHVVSEVTQSRSDHSIELFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTG 955 (1973)
T ss_pred CccchhhhhhhhheecccccccchhhhccccccccchhhhhhhhhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHH
Confidence 55555 78888888888775433 3222 3677889999999999988998775 7999999999
Q ss_pred EeCCeEeEEecCchhhccc----------CCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHH
Q psy10626 80 LCGQLLCFFKDQDDFVASK----------AATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVN 149 (344)
Q Consensus 80 LrG~~L~fYKDeke~a~~~----------a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~ 149 (344)
|.|+.|++|++..+..... ....++.|.+|.+++....+++++||+|.+.+.++++|+|+|.++|-.|++
T Consensus 956 l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ 1035 (1973)
T KOG4407|consen 956 LHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLS 1035 (1973)
T ss_pred hccccceecccccccCcchhhhhcccccccccCccccccchhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhh
Confidence 9999999999987733211 123467888999888777799999999999999999999999999999999
Q ss_pred HHHHhhCCCC
Q psy10626 150 KISFHAQLPP 159 (344)
Q Consensus 150 AIr~aaaL~~ 159 (344)
.+...+....
T Consensus 1036 ttq~St~~na 1045 (1973)
T KOG4407|consen 1036 TTQSSTTENA 1045 (1973)
T ss_pred hhhhcccccc
Confidence 9976655443
No 36
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.64 E-value=3.6e-07 Score=77.74 Aligned_cols=97 Identities=21% Similarity=0.403 Sum_probs=67.4
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE---------ecCCCCCCc
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE---------KAGDYTKRK 121 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~---------ia~dy~KRK 121 (344)
.||||.-.. .++ +...+.|+++|+||++..|+||-.+.+... ..+...++|.. .+. +..+.+.-+
T Consensus 2 lEGwlsvP~---~~~-~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~-~~p~~vldl~~-~fhv~~V~asDVi~a~~kDiP 75 (112)
T cd01242 2 MEGWLSLPN---RTN-KSRKPGWKKQYVVVSSRKILFYNDEQDKEN-STPSMILDIDK-LFHVRPVTQGDVYRADAKEIP 75 (112)
T ss_pred cceeEEccC---CCC-ccccCCceEEEEEEeCCEEEEEecCccccC-CCcEEEEEccc-eeeeecccHHHeeecCcccCC
Confidence 589997432 112 112468999999999999999987765321 12233444432 111 222446678
Q ss_pred ceEEEEeCC-CcEEEEECCCHHHHHHHHHHHHH
Q psy10626 122 HVFRLYCTD-GSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 122 nVFrL~tpd-g~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
.+|+|...+ +...||.|++++|-+.|+.+|..
T Consensus 76 ~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~ 108 (112)
T cd01242 76 KIFQILYANEARDLLLLAPQTDEQNKWVSRLVK 108 (112)
T ss_pred eEEEEEeCCccceEEEEeCCchHHHHHHHHHHH
Confidence 999999865 58999999999999999999974
No 37
>KOG0517|consensus
Probab=98.63 E-value=1.8e-10 Score=129.75 Aligned_cols=107 Identities=36% Similarity=0.526 Sum_probs=94.9
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc----cCCCccEEecccEEEecCCCCCCcceE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS----KAATSPIIIFKARCEKAGDYTKRKHVF 124 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~----~a~~~~IsL~ga~v~ia~dy~KRKnVF 124 (344)
...+|+|+||+..++.++++..|.|...||+|+.+.|.||||.+....+ .....++.+..+.|.++.+|.+++|||
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~ 2378 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVF 2378 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhh
Confidence 3578999999999998999999999999999999999999998765443 134567888888889999999999999
Q ss_pred EEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
.|..++|.+|+|+|.++++|+.|+.++....
T Consensus 2379 ~l~~~~gae~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2379 LLQLPPGAEHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred hhcCCchHHHHHhhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987554
No 38
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.57 E-value=3.5e-07 Score=77.03 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=63.7
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeC-CeEe---EEecCc--hhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-QLLC---FFKDQD--DFVASKAATSPIIIFKARCEKAGDYTKRKHVF 124 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-~~L~---fYKDek--e~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF 124 (344)
|+|||+.+. ++...-.|.++||...+ +.++ .+.... +..........|.|..|.+..+ +...|.++|
T Consensus 1 k~GYLy~~~------k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~-~~~dRRFCF 73 (104)
T cd01249 1 KEGYLYMQE------KSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKT-ESIDKRFCF 73 (104)
T ss_pred CCceEEEEc------CCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeecccccc-CCccceeeE
Confidence 589998553 23344589999999875 3332 222221 0011112345677777766544 446788999
Q ss_pred EEEeCCC-cEEEEECCCHHHHHHHHHHHH
Q psy10626 125 RLYCTDG-SEFLFLAPSETLMEDWVNKIS 152 (344)
Q Consensus 125 rL~tpdg-~eyLFqAeSeeEM~eWI~AIr 152 (344)
+|.+.+. ..++|||+|+.|...||.||.
T Consensus 74 ei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 9988765 379999999999999999985
No 39
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.45 E-value=2.2e-06 Score=73.96 Aligned_cols=99 Identities=17% Similarity=0.302 Sum_probs=66.9
Q ss_pred EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc--cCCCccEEecc--cEEE-------ecCCCC
Q psy10626 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS--KAATSPIIIFK--ARCE-------KAGDYT 118 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~--~a~~~~IsL~g--a~v~-------ia~dy~ 118 (344)
..||||.... .+| ..+.|+++|+||++..|+||-.+.+.... ......|++++ +.+. +..+.+
T Consensus 3 ~~EGwvkvP~---~~~---~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~k 76 (122)
T cd01243 3 AYEGHVKIPK---PGG---VKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKK 76 (122)
T ss_pred cceeeEeccC---CCC---cccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcc
Confidence 3689997432 112 23689999999999999999866543211 11223456642 2222 112335
Q ss_pred CCcceEEEEeC------CCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 119 KRKHVFRLYCT------DGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 119 KRKnVFrL~tp------dg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.-+++|+|.+. .+...||.|+++.|-+.|+.+|...
T Consensus 77 DiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 77 DIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred cCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 66899999874 4578999999999999999999754
No 40
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.39 E-value=7.4e-07 Score=75.46 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred EEEEEEeeeeeeccCCccccccCCceEEEEEeCCe-----EeEEecCchhhcccCCCccEEecccEEEecCCC-------
Q psy10626 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQL-----LCFFKDQDDFVASKAATSPIIIFKARCEKAGDY------- 117 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~-----L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy------- 117 (344)
.++|||.+.. +...+.|++|||||++=. |+-|+.++. .+...|.|.|.+|+.....
T Consensus 3 k~sGyL~k~G-------g~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~ 70 (117)
T cd01234 3 KHCGYLYAIG-------KNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSE 70 (117)
T ss_pred ceeEEEEecc-------chhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCcccc
Confidence 3789998432 235899999999999733 333333322 2467899999998854321
Q ss_pred ---CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626 118 ---TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157 (344)
Q Consensus 118 ---~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL 157 (344)
...++-|...- .|.+..|+.+++.|...||+++-+|.+.
T Consensus 71 ~~~~gg~~ff~avk-egd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 71 LSLQGGRHFFNAVK-EGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred cccccchhhhheec-cCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 24455666553 5689999999999999999999988763
No 41
>KOG0690|consensus
Probab=98.37 E-value=2.9e-07 Score=91.69 Aligned_cols=99 Identities=17% Similarity=0.335 Sum_probs=71.8
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEe-CCeEeEEecCchhhccc-CCCccEEecccEEEecCCCCCCcceEE
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC-GQLLCFFKDQDDFVASK-AATSPIIIFKARCEKAGDYTKRKHVFR 125 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr-G~~L~fYKDeke~a~~~-a~~~~IsL~ga~v~ia~dy~KRKnVFr 125 (344)
.|.++|||++|.+ -.++|+.+||+|. .+.|.-|+.+....... .+.+-+.+.+| ....-...|+|.|-
T Consensus 14 ~vvkEgWlhKrGE--------~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~c--q~m~~erPrPntFi 83 (516)
T KOG0690|consen 14 DVVKEGWLHKRGE--------HIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDC--QTMKTERPRPNTFI 83 (516)
T ss_pred hhHHhhhHhhcch--------hhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhh--hhhhccCCCCceEE
Confidence 5999999997654 3799999999997 57888898775432110 11122233333 23334578999999
Q ss_pred EEeCCCc---EEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 126 LYCTDGS---EFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 126 L~tpdg~---eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
|++-.+. +-.|.+++.++.++|+.||+.++.
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 9987664 467999999999999999998874
No 42
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.36 E-value=8.4e-07 Score=75.69 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=62.1
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC----C-CCCcceEE
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD----Y-TKRKHVFR 125 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d----y-~KRKnVFr 125 (344)
.+|+|+-|. .+.++|+++||+|++.-||++--.+.. ...+....+.+.+..|=...+ | ..-.|.|.
T Consensus 2 ~~g~LylK~--------~gkKsWKk~~f~LR~SGLYy~~Kgksk-~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~ 72 (114)
T cd01259 2 MEGPLYLKA--------DGKKSWKKYYFVLRSSGLYYFPKEKTK-NTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFG 72 (114)
T ss_pred ccceEEEcc--------CCCccceEEEEEEeCCeeEEccCCCcC-CHHHHHHHHhcccCcEEEEechhhccCCCCCceEE
Confidence 589999774 357899999999999999887433321 111111223333322221111 1 23468899
Q ss_pred EEeCC------CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 126 LYCTD------GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 126 L~tpd------g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
|..+. ...-+|+|+|+..+..||.+|+-+
T Consensus 73 ~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 73 FKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred EeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 87652 235789999999999999999854
No 43
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=98.27 E-value=2.5e-06 Score=71.75 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=59.0
Q ss_pred ccCCceEEEEEe----CCeEeEEec--CchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHH
Q psy10626 70 VRSWKSLYTVLC----GQLLCFFKD--QDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETL 143 (344)
Q Consensus 70 ~RsWKkrwfVLr----G~~L~fYKD--eke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeE 143 (344)
.-.|+++-.+|+ |..|.||-- .+...+ .-...+..|....-.-+.++.++.|+|.|+..++.+|+|+|.|.++
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrp-k~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q 96 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKP-KLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQ 96 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCC-ccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHH
Confidence 567999999887 456666654 222211 1122333444433333456778999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy10626 144 MEDWVNKISF 153 (344)
Q Consensus 144 M~eWI~AIr~ 153 (344)
|+.|+..|+.
T Consensus 97 ~~SWla~Ir~ 106 (107)
T cd01231 97 LNSWLAELRY 106 (107)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 44
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.25 E-value=4.8e-06 Score=70.59 Aligned_cols=98 Identities=11% Similarity=0.235 Sum_probs=66.5
Q ss_pred EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-cCCCccEEec--ccE-EEecCC---CCCCcceE
Q psy10626 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-KAATSPIIIF--KAR-CEKAGD---YTKRKHVF 124 (344)
Q Consensus 52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-~a~~~~IsL~--ga~-v~ia~d---y~KRKnVF 124 (344)
.|||.-+ ... +| ...+.|+.+|++|+|..|++|+........ ..+.....|. -+. +..... ..++.++|
T Consensus 2 mGW~~E~-~~~-~~--~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F 77 (108)
T cd01258 2 IGWVNEQ-LSG-DD--ESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCF 77 (108)
T ss_pred ceecccc-cCC-CC--ccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEE
Confidence 5999844 221 11 135899999999999999999876543221 1122222332 111 111111 23788999
Q ss_pred EEEeCCC-cEEEEECCCHHHHHHHHHHHHH
Q psy10626 125 RLYCTDG-SEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 125 rL~tpdg-~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
.|++..+ ..++|.+++..||..|.++|..
T Consensus 78 ~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 78 LIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred EEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 9999999 9999999999999999999974
No 45
>KOG3640|consensus
Probab=98.24 E-value=1.5e-06 Score=94.42 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE---ec-CCCCCCcc
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE---KA-GDYTKRKH 122 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~---ia-~dy~KRKn 122 (344)
..|+..|||..=.+ .++...|++|||+|.|+.+.|+|-..+-+ ...+.+.|+|..|+-. .+ .+...|.|
T Consensus 988 idVEYrGFLtmfed------~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFED------GSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred cceeeeeeeeeeec------cCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCc
Confidence 34667788874332 24567799999999999999999544322 2246788999887633 22 25688999
Q ss_pred eEEEEeC-----C-------C-cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 123 VFRLYCT-----D-------G-SEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 123 VFrL~tp-----d-------g-~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
.|.|.+- | - .-.+|+|++-+|++.|+.+||.+.
T Consensus 1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL 1106 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTL 1106 (1116)
T ss_pred eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHH
Confidence 9999831 1 1 268999999999999999999653
No 46
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.24 E-value=1.6e-05 Score=66.75 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=68.8
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC 128 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t 128 (344)
..++|-|.+-+ .+.-+.|||.|=++.|.|-+-.-. .....-...++|.+..+.-..|...-+|.|.|.+
T Consensus 4 li~eG~L~K~~----------rk~~~~R~ffLFnD~LvY~~~~~~-~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~ 72 (104)
T cd01218 4 LVGEGVLTKMC----------RKKPKQRQFFLFNDILVYGNIVIS-KKKYNKQHILPLEGVQVESIEDDGIERNGWIIKT 72 (104)
T ss_pred EEecCcEEEee----------cCCCceEEEEEecCEEEEEEeecC-CceeeEeeEEEccceEEEecCCcccccceEEEec
Confidence 45789997433 455677899999998877532111 0011124567888877654445445689999999
Q ss_pred CCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 129 TDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 129 pdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+. +.|.++|+|++|..+|+.+|+.|+.
T Consensus 73 ~~-kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 73 PT-KSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred CC-eEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 86 7999999999999999999998863
No 47
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=98.11 E-value=7.7e-06 Score=82.63 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=66.4
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEe---cccEEEe-cCCCCCCcce
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII---FKARCEK-AGDYTKRKHV 123 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL---~ga~v~i-a~dy~KRKnV 123 (344)
.+...|||. |. .....|+++|+.|.++.+.+...+.....+. ....+.+ .++ +-+ .....+++|+
T Consensus 376 Dv~~~G~l~-k~--------~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~v-~pv~~~~~~~~~~~ 444 (478)
T PTZ00267 376 DVTHGGYLY-KY--------SSDMRWKKRYFYIGNGQLRISLSENPENDGV-APKSVNLETVNDV-FPVPEVYSQKHPNQ 444 (478)
T ss_pred CcccceEEe-cc--------CCCcchhhheEEecCCceEEEeccccccCCC-CCccccHHHhccc-ccccHHhcCCCCce
Confidence 466788887 33 1244699999999987777653322211111 1122222 222 112 1233568999
Q ss_pred EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626 124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157 (344)
Q Consensus 124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL 157 (344)
|.|.+.++..++|+|+|+++|++||.+|+.+.++
T Consensus 445 ~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 478 (478)
T PTZ00267 445 LVLWFNNGQKIIAYAKTAEDRDQWISKFQRACGM 478 (478)
T ss_pred EEEEecCCcEEEEecCChHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988763
No 48
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.01 E-value=5.6e-05 Score=64.33 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=69.0
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchh--hcc-----cCCCccEEecccEEEecCCCCCCc
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF--VAS-----KAATSPIIIFKARCEKAGDYTKRK 121 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~--a~~-----~a~~~~IsL~ga~v~ia~dy~KRK 121 (344)
..++|-|.+-. ...+.++.||+.|=++.|.+.|-.... ..+ ......++|.+..+.-..+...-+
T Consensus 4 lI~EG~L~ki~--------~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~k 75 (112)
T cd01261 4 FIMEGTLTRVG--------PSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYK 75 (112)
T ss_pred ccccCcEEEEe--------cccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccC
Confidence 45678886322 224678899999999999998853321 000 011233667665554334444568
Q ss_pred ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
|.|.|.+.++..|+|+|.+++|-++||.+|..+.
T Consensus 76 naF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 76 NAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred ceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 9999999877899999999999999999998664
No 49
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.95 E-value=5.7e-05 Score=64.89 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=62.8
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEE-ecCCC----CCCcceEE
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDY----TKRKHVFR 125 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~-ia~dy----~KRKnVFr 125 (344)
||||+..=. .....||++|.+|....|.+|+++...+ ...-|.|.+-... .+.+. ....|+|+
T Consensus 2 kEGWmVHyT--------~~d~~rKRhYWrLDsK~Itlf~~e~~sk----yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 2 KEGWMVHYT--------SSDNRRKKHYWRLDSKAITLYQEESGSR----YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred ccceEEEEe--------cCccceeeeEEEecCCeEEEEEcCCCCe----eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 799997432 2468899999999999999999987543 2445666543321 12221 35899999
Q ss_pred EEeCCCcEEEEECC--------------------CHHHHHHHHHHHHHh
Q psy10626 126 LYCTDGSEFLFLAP--------------------SETLMEDWVNKISFH 154 (344)
Q Consensus 126 L~tpdg~eyLFqAe--------------------SeeEM~eWI~AIr~a 154 (344)
|+|.+ .+|+...+ ..+..+.|-.||+.|
T Consensus 70 i~T~~-~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTTT-NVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEecC-EEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 99966 67777554 234558899988754
No 50
>KOG2059|consensus
Probab=97.94 E-value=1.6e-05 Score=84.78 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=76.8
Q ss_pred CeEEEEEEeeeeeeccCCc-cccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EE-ecCCCCCCcceE
Q psy10626 48 PVEIQGVLERKHELQSGGK-KAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CE-KAGDYTKRKHVF 124 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGK-Ks~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~-ia~dy~KRKnVF 124 (344)
.|.++|.+.++. .|| +.+.++.|++||-|++..|.|.|+.... +...|.|.+.. ++ +....-+.+|||
T Consensus 564 ~v~k~glm~kr~----~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----~~~~Ipl~nI~avEklee~sF~~knv~ 634 (800)
T KOG2059|consen 564 VVLKEGLMIKRA----QGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----PIYTIPLSNIRAVEKLEEKSFKMKNVF 634 (800)
T ss_pred ceecccceEecc----ccccchhhhhhhheEEEeccceeEEecCCccC-----cccceeHHHHHHHHHhhhhccCCCceE
Confidence 355566665332 233 3446899999999999999999998753 35677776532 22 222335789999
Q ss_pred EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626 125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP 159 (344)
Q Consensus 125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~ 159 (344)
+|++.| +..+|||.+-.|.++|+.+|..++....
T Consensus 635 qVV~~d-rtly~Q~~n~vEandWldaL~kvs~~N~ 668 (800)
T KOG2059|consen 635 QVVHTD-RTLYVQAKNCVEANDWLDALRKVSCCNQ 668 (800)
T ss_pred EEEecC-cceeEecCCchHHHHHHHHHHHHhccCc
Confidence 999999 7999999999999999999998887663
No 51
>KOG1451|consensus
Probab=97.76 E-value=5.5e-05 Score=79.61 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=98.3
Q ss_pred CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC--eEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcce
Q psy10626 46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~--~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnV 123 (344)
.++-.++|+|+... |...-..|.++||+-... .+..-.-.+...........+-|..|.- ...|.-.+.+|
T Consensus 262 p~p~t~eGYlY~QE------K~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~R-RktdSIdKRFC 334 (812)
T KOG1451|consen 262 PTPSTKEGYLYMQE------KSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSR-RKTDSIDKRFC 334 (812)
T ss_pred CCCcccceeeeehh------hhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhcc-Cccccccccee
Confidence 46788999998532 223357999999998643 2222222221111112344566766642 33455567799
Q ss_pred EEEEeCCC-cEEEEECCCHHHHHHHHHHHHHhhCCCCC-CcccccccccccccCCCcchhhhhcccccccccCCCccccC
Q psy10626 124 FRLYCTDG-SEFLFLAPSETLMEDWVNKISFHAQLPPS-LQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINS 201 (344)
Q Consensus 124 FrL~tpdg-~eyLFqAeSeeEM~eWI~AIr~aaaL~~s-e~L~s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~ 201 (344)
|-|.+.+. .+..+||=+++|...||.|+..+--.-.+ +...+|..-. -..-|=.++.||-+.+-+.|..++||+|.
T Consensus 335 FDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y~s~~~~~~~~~~q--Ld~iGF~fvrkCI~i~Et~GI~eqGlYR~ 412 (812)
T KOG1451|consen 335 FDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSYTSGENCSTYKQTQ--LDDIGFEFVRKCIDILETSGIHEQGLYRN 412 (812)
T ss_pred eeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccccCccccchhhhhh--hhhhhHHHHHHHHHHHHhcCcccccchhh
Confidence 99987642 48899999999999999999755321111 2222333221 12456789999999999999999999999
Q ss_pred CCcc
Q psy10626 202 DGYS 205 (344)
Q Consensus 202 ~g~~ 205 (344)
-|..
T Consensus 413 vGvn 416 (812)
T KOG1451|consen 413 VGVN 416 (812)
T ss_pred ccch
Confidence 8863
No 52
>KOG1090|consensus
Probab=97.68 E-value=1.8e-05 Score=86.84 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=71.4
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEe--CCeEeEEecCchhhcccCCCccEEecccE--EEecCCCCCCcceEEE
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPIIIFKAR--CEKAGDYTKRKHVFRL 126 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLr--G~~L~fYKDeke~a~~~a~~~~IsL~ga~--v~ia~dy~KRKnVFrL 126 (344)
-+|+|++++ +..+.|+.+||||. ..+|+||-|..+.+ +.++|+|-.-. ..+...-..++-.|.|
T Consensus 1636 ~eG~LyKrG--------A~lK~Wk~RwFVLd~~khqlrYYd~~edt~----pkG~IdLaevesv~~~~~k~vdekgffdl 1703 (1732)
T KOG1090|consen 1636 PEGYLYKRG--------AKLKLWKPRWFVLDPDKHQLRYYDDFEDTK----PKGCIDLAEVESVALIGPKTVDEKGFFDL 1703 (1732)
T ss_pred cccchhhcc--------hhhcccccceeEecCCccceeeeccccccc----ccchhhhhhhhhhcccCccccCccceeee
Confidence 399999654 46899999999997 48999998887654 47888886422 1122233556779999
Q ss_pred EeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 127 YCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.+.+ ++|-|.|.+....+.|+..|+.+
T Consensus 1704 ktt~-rvynf~a~nin~AqqWve~iqsc 1730 (1732)
T KOG1090|consen 1704 KTTN-RVYNFCAQNINLAQQWVECIQSC 1730 (1732)
T ss_pred ehhh-HHHHHHhccchHHHHHHHHHHHh
Confidence 9987 89999999999999999999854
No 53
>KOG3751|consensus
Probab=97.59 E-value=9.7e-05 Score=76.87 Aligned_cols=100 Identities=20% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec----CCC-CCC
Q psy10626 46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA----GDY-TKR 120 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia----~dy-~KR 120 (344)
.....++|+|+.|. .+.|.||++||||+..-|||+--.... ..++..-..++++..|=.. .-| ..-
T Consensus 314 ~~~pei~GfL~~K~--------dgkKsWKk~yf~LR~SGLYys~K~tsk-~~r~Lq~l~~~~~snVYt~i~~rKkyksPT 384 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKE--------DGKKSWKKHYFVLRRSGLYYSTKGTSK-EPRHLQCLADLHSSNVYTGIGGRKKYKSPT 384 (622)
T ss_pred CCCccccceeeecc--------cccccceeEEEEEecCcceEccCCCCC-CchhhHHHHhcccCceEEeecchhccCCCC
Confidence 45688999999875 257889999999999999988544322 1122222234443222211 122 223
Q ss_pred cceEEEEeC---C--CcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 121 KHVFRLYCT---D--GSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 121 KnVFrL~tp---d--g~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.|.|.|... + ...-+|+|+|+....-|+.||+.+
T Consensus 385 d~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 385 DYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred CceEEeeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence 577887753 2 235689999999999999999844
No 54
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.56 E-value=0.00026 Score=72.46 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=40.7
Q ss_pred ecCCCCC--CcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCC
Q psy10626 113 KAGDYTK--RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP 159 (344)
Q Consensus 113 ia~dy~K--RKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~ 159 (344)
+..-|.. .+|||.|...+|+.+.|+|.+++|++.||++|+.+.++-.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (496)
T PTZ00283 445 VPSKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGIGD 493 (496)
T ss_pred ccHHhhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCCCC
Confidence 3334544 8999999999999999999999999999999999988653
No 55
>KOG0521|consensus
Probab=97.54 E-value=3.8e-05 Score=83.61 Aligned_cols=95 Identities=17% Similarity=0.300 Sum_probs=72.8
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEe
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYC 128 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~t 128 (344)
..+.|.|+.|-. ...+.|.++||-+.++.|.+++.-..... ...++|.-|.+....+...+++||+|++
T Consensus 274 ~~~~~~l~~k~~-------~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~~~drr~CF~iiS 342 (785)
T KOG0521|consen 274 YRMEGYLRKKAS-------NASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAEQRDRRFCFEIIS 342 (785)
T ss_pred hhhhhhhhhhcc-------cchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcccccceeeEEEec
Confidence 445566664431 13789999999999888888876554321 3456787888777666668899999999
Q ss_pred CCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 129 TDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 129 pdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
++ +.|+|||+|+.+-++||.+|+..+
T Consensus 343 ~t-ks~~lQAes~~d~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 343 PT-KSYLLQAESEKDCQDWISALQNSI 368 (785)
T ss_pred CC-cceEEecCchhHHHHHHHHHHHHH
Confidence 66 799999999999999999998665
No 56
>KOG3531|consensus
Probab=97.38 E-value=5.1e-05 Score=82.18 Aligned_cols=92 Identities=23% Similarity=0.395 Sum_probs=72.9
Q ss_pred EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCCCcceEEEEeC
Q psy10626 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTKRKHVFRLYCT 129 (344)
Q Consensus 52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~KRKnVFrL~tp 129 (344)
.|+|-||.. ....|++.|+|...-+|+|||..++..+ ...+.|-|..+.+.. +--.|.+||.|.-.
T Consensus 927 sg~Llrkfk--------nssgwqkLwvvft~fcl~fyKS~qD~~~----laslPlLgysvs~P~~~d~i~K~~vfkl~fk 994 (1036)
T KOG3531|consen 927 SGYLLRKFK--------NSSGWQKLWVVFTNFCLFFYKSHQDSEP----LASLPLLGYSVSIPAEPDPIQKDYVFKLKFK 994 (1036)
T ss_pred hHHHHHHhh--------ccccceeeeeeecceeeEeecccccccc----cccccccccccCCCCCCCCcchhheeeeehh
Confidence 466666652 2458999999999999999998876433 456667777666543 45678999999988
Q ss_pred CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 130 DGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 130 dg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+ ..|+|.|++.-..+.|+..|+.+..
T Consensus 995 ~-hvyffraes~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 995 S-HVYFFRAESYYTFERWMEVITDAPS 1020 (1036)
T ss_pred h-hHHHHhhhhhhhhhhHHHHhhcCCc
Confidence 7 6999999999999999999986654
No 57
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.14 E-value=0.0029 Score=55.05 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=49.1
Q ss_pred CceEEEEEeCCeEeEEecCchhhcc---cCCCccEEecccEEEec---CC--CCCCcceEEEEeC---CC--cEEEEECC
Q psy10626 73 WKSLYTVLCGQLLCFFKDQDDFVAS---KAATSPIIIFKARCEKA---GD--YTKRKHVFRLYCT---DG--SEFLFLAP 139 (344)
Q Consensus 73 WKkrwfVLrG~~L~fYKDeke~a~~---~a~~~~IsL~ga~v~ia---~d--y~KRKnVFrL~tp---dg--~eyLFqAe 139 (344)
=+.+|+.|-.+.|.+.|-+.+..-. .++-..|.+.++..... .+ ....+|+|.|..- +| .+++|+|+
T Consensus 27 ~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~ 106 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSAD 106 (125)
T ss_pred CCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECC
Confidence 4579999999999988754321100 01122233332211100 00 0146899999743 33 57999999
Q ss_pred CHHHHHHHHHHHH
Q psy10626 140 SETLMEDWVNKIS 152 (344)
Q Consensus 140 SeeEM~eWI~AIr 152 (344)
|++|+..||.||.
T Consensus 107 S~sdr~rWi~Al~ 119 (125)
T cd01221 107 SQSDRERWLSALA 119 (125)
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999984
No 58
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.08 E-value=0.0081 Score=51.25 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=58.6
Q ss_pred cCC-ceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCC------CcceEEEEeCC-CcEEEEECCCHH
Q psy10626 71 RSW-KSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTK------RKHVFRLYCTD-GSEFLFLAPSET 142 (344)
Q Consensus 71 RsW-KkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~K------RKnVFrL~tpd-g~eyLFqAeSee 142 (344)
+.| +.|++.|=.++|+++|-..-........+.|++..+.+.-..|-.. -+|.|.|...+ +..|+|.|.+.+
T Consensus 15 ~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e 94 (109)
T cd01224 15 KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAE 94 (109)
T ss_pred cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHH
Confidence 344 4788899999999998543221111234567888776654433322 38999999877 568999999999
Q ss_pred HHHHHHHHHH
Q psy10626 143 LMEDWVNKIS 152 (344)
Q Consensus 143 EM~eWI~AIr 152 (344)
+-+.|++||.
T Consensus 95 ~K~~Wm~a~~ 104 (109)
T cd01224 95 RKHRWLSAFA 104 (109)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 59
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.04 E-value=0.0026 Score=68.66 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=67.1
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecc-cEEE-ecCC--CCCCcce
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK-ARCE-KAGD--YTKRKHV 123 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~g-a~v~-ia~d--y~KRKnV 123 (344)
.+.++|||++=. -+|.+...=+++||||+|..|.+||.+.... ..+.....|.+ |.|+ .-.. ..+--||
T Consensus 3 ~~~~eGW~y~~g-----~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~~g~~~yv 75 (719)
T PLN00188 3 KVVYEGWMVRYG-----RRKIGRSYIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV 75 (719)
T ss_pred cceEeeEEEEEc-----ccccccccceeEEEEEecchhhhcccCCccc--cccceeeccCCCceEeecCceEEcCceEEE
Confidence 578999998532 2344556679999999999999999865432 12222333332 3332 1111 1222356
Q ss_pred EEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 124 FRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 124 FrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
|+|-.. ......|.|.+.+|...|+++|..|+.
T Consensus 76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 110 (719)
T PLN00188 76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVID 110 (719)
T ss_pred EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHh
Confidence 666543 335789999999999999999998875
No 60
>PLN02866 phospholipase D
Probab=96.99 E-value=0.0054 Score=68.67 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=70.8
Q ss_pred CCCCeEEEEEEeeeeeecc-C-Ccccc----------ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-----
Q psy10626 45 QLPPVEIQGVLERKHELQS-G-GKKAA----------VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF----- 107 (344)
Q Consensus 45 ~l~~V~KeGwL~RKq~les-g-GKKs~----------~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~----- 107 (344)
++++-.+||++.+|+.-.. + +.+.. .-+|.++|+||+.+.|.|.+|....+. ...|.+.
T Consensus 178 ~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~----~~v~lfD~~~~~ 253 (1068)
T PLN02866 178 EYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKP----LDIIVFDVLPAS 253 (1068)
T ss_pred hcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCce----eEEEEEeccccc
Confidence 3677889999986642111 1 11111 257999999999999999877765332 1111111
Q ss_pred ----ccEEEecCCC---CCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 108 ----KARCEKAGDY---TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 108 ----ga~v~ia~dy---~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
+..+.++.+. ..-+|.|+|...+ +...|-+.+..++..|+.+|+.++
T Consensus 254 ~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 254 NGNGEGQISLAKEIKERNPLRFGFKVTCGN-RSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred ccCCCcceeecccccccCCCcceEEEecCc-eEEEEEECCHHHHHHHHHHHHHHH
Confidence 1123333333 2347899998765 789999999999999999999886
No 61
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=96.97 E-value=0.0081 Score=50.64 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCC-eEeEEecCchhhcccCCCccEEecccE-EEecCCCCCCcce
Q psy10626 46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-LLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGDYTKRKHV 123 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~-~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~dy~KRKnV 123 (344)
...|.++|.|.++.. .. +++|+++|+++ .|+|+.-..... .+.|.+..+. +.. +....
T Consensus 10 ge~Il~~g~v~K~kg--------l~--~kkR~liLTd~PrL~Yvdp~~~~~-----KGeI~~~~~l~v~~-----k~~~~ 69 (104)
T PF14593_consen 10 GELILKQGYVKKRKG--------LF--AKKRQLILTDGPRLFYVDPKKMVL-----KGEIPWSKELSVEV-----KSFKT 69 (104)
T ss_dssp T--EEEEEEEEEEET--------TE--EEEEEEEEETTTEEEEEETTTTEE-----EEEE--STT-EEEE-----CSSSE
T ss_pred CCeEEEEEEEEEeec--------eE--EEEEEEEEccCCEEEEEECCCCeE-----CcEEecCCceEEEE-----ccCCE
Confidence 447999999986541 12 89999999987 666664443321 3567777542 333 23348
Q ss_pred EEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 124 FRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 124 FrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
|.|.++ ++.|+|...+.. ...|+++|+.+.
T Consensus 70 F~I~tp-~RtY~l~d~~~~-A~~W~~~I~~~~ 99 (104)
T PF14593_consen 70 FFIHTP-KRTYYLEDPEGN-AQQWVEAIEEVK 99 (104)
T ss_dssp EEEEET-TEEEEEE-TTS--HHHHHHHHHHHH
T ss_pred EEEECC-CcEEEEECCCCC-HHHHHHHHHHHH
Confidence 999999 589999985555 566999998653
No 62
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.92 E-value=0.011 Score=50.73 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceE
Q psy10626 45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF 124 (344)
Q Consensus 45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVF 124 (344)
.+|.|....-+..... ....=..||+||=.+.|++.+...... +-...+.++|.+..+....+....+|+|
T Consensus 8 ~lG~vi~mS~V~~~~~--------~~qe~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd~e~~~~aF 78 (111)
T cd01225 8 TLGNVIHMSQVAVQYG--------AGEEKRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLEDTEALKNAF 78 (111)
T ss_pred hcCceEEEEEEEEecC--------CccccceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHhccCccceE
Confidence 4666666665543321 122345788999988888887643211 2223567889988877655666789999
Q ss_pred EEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 125 RLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+|.-+.-...++.+.++.|+++|+..|+..
T Consensus 79 eI~G~li~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 79 EISGPLIERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred EEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence 999888789999999999999999999853
No 63
>KOG1117|consensus
Probab=96.84 E-value=0.00068 Score=74.04 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=94.0
Q ss_pred ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHH
Q psy10626 70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVN 149 (344)
Q Consensus 70 ~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~ 149 (344)
.-.|++-||-|.|..|.+.-......... .....|+.-.+.-..+...|.-+|.|... |++.+++.++..|...|..
T Consensus 628 ~~~~r~gwfsl~gssl~~~~~~~~ve~d~--~hlrrlqElsi~s~~~n~~K~~~l~lve~-grTLYI~g~~rldft~W~~ 704 (1186)
T KOG1117|consen 628 LDQARKGWFSLDGSSLHFCLQMQPVEEDR--MHLRRLQELSISSMVQNGEKLDVLVLVEK-GRTLYIQGETRLDFTVWHT 704 (1186)
T ss_pred hhhccccceecCCCeeEEecCCCcCchhH--HHHHHHHHHhhhhccCCcccccceEEEee-ccEEEEecCCcchHHHHHH
Confidence 46799999999999998876543321100 00111222212211122235567877764 5899999999999999999
Q ss_pred HHHHhhCCCCCCcccccccccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 150 KISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 150 AIr~aaaL~~se~L~s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
||..|++-... .+++..- +-.-.|.||.+|.+|+-..|++-||++|--|+--. ..|..+|-+-
T Consensus 705 AIekaa~~~gt----~LqeqqL-s~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~D 768 (1186)
T KOG1117|consen 705 AIEKAAGTDGT----ALQEQQL-SKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKD 768 (1186)
T ss_pred HHHHHhcCCcc----hhhhhhc-cCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhc
Confidence 99988864431 1111111 22456999999999999999999999998888765 7777777654
No 64
>KOG3723|consensus
Probab=96.64 E-value=0.00065 Score=71.70 Aligned_cols=99 Identities=24% Similarity=0.416 Sum_probs=67.6
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EE-ec--CCCCCCcceE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CE-KA--GDYTKRKHVF 124 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~-ia--~dy~KRKnVF 124 (344)
...||-|.-| +||=...|.|+.+||.|.|..|.|-|....... ...+|+|.... |. ++ .....-+-.|
T Consensus 735 p~iEGQLKEK-----KGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS---~~~~IDl~~IRSVk~v~~kr~~rslpKAF 806 (851)
T KOG3723|consen 735 PLIEGQLKEK-----KGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS---DDCPIDLSKIRSVKAVAKKRRDRSLPKAF 806 (851)
T ss_pred chhcchhhhh-----ccchhhhhhhccceEEecchhhhcccCCCCCCC---CCCCccHHHhhhHHHHHhhhhhcccchhh
Confidence 3567777533 243334689999999999999999775543211 13567776422 11 22 1112224589
Q ss_pred EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+|-|.|. +|+|.|.|+...++|++.|+-|.+
T Consensus 807 EIFTAD~-T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 807 EIFTADK-TYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred heeecCc-eEEeecccccCHHHHHHHHHHHHH
Confidence 9999995 599999999999999999997654
No 65
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=96.52 E-value=0.00073 Score=62.73 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=40.3
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccccccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~~~~~~~~~~~ 217 (344)
..+|.++++|+++|.++|+.++||||++|+.+..++.+.||..
T Consensus 13 ~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~~~~lk~~~d~~ 55 (200)
T cd04388 13 DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSSLTELRQILDCD 55 (200)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCceeeCCCccHHHHHHHHHhcC
Confidence 6889999999999999999999999999999998899999974
No 66
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.20 E-value=0.079 Score=44.08 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL 126 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL 126 (344)
|...++|.|.. . +.=+.|++.|=...|.|.|-.... .....-|.+.+-.+.-..+ .-++.|.|
T Consensus 2 geLlleg~l~~-~-----------~~~~eR~vFLFe~~ll~~K~~~~~---y~~K~~i~~~~l~i~e~~~--~d~~~F~v 64 (97)
T cd01222 2 GDLLLEGRFRE-H-----------GGGKPRLLFLFQTMLLIAKPRGDK---YQFKAYIPCKNLMLVEHLP--GEPLCFRV 64 (97)
T ss_pred CceeeeceEEe-e-----------cCCCceEEEEecccEEEEEecCCe---eEEEEEEEecceEEecCCC--CCCcEEEE
Confidence 45677888852 1 112357888888888887754321 1112335554443332222 22799999
Q ss_pred EeCCC--cEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 127 YCTDG--SEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 127 ~tpdg--~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
...+. ..|.|+|.|.++-+.||++|+.+.
T Consensus 65 ~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 65 IPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 76642 489999999999999999998763
No 67
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.00 E-value=0.0084 Score=51.45 Aligned_cols=96 Identities=15% Similarity=0.303 Sum_probs=69.0
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC--CCCcceEE
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY--TKRKHVFR 125 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy--~KRKnVFr 125 (344)
++..+|++. |- || .....|+++||-|=-+.|-+|....+.. ...|.+..- .++..++ -|..+|+.
T Consensus 2 DcIvhGyi~-KL----GG--PFls~WQ~Ry~~LfPNRLE~~~~~~~~~-----~eLi~M~~i-~~V~~e~~~iK~~~CI~ 68 (116)
T cd01240 2 DCIVHGYIK-KL----GG--PFLSQWQTRYFKLYPNRLELYGESEANK-----PELITMDQI-EDVSVEFQQIKEENCIL 68 (116)
T ss_pred ceEEeeehh-hh----CC--HHHHHHHHHHheeCcceeeecccccccC-----CcEEEeehh-hhcchhheeeccCceEE
Confidence 477889986 42 22 2357899999999999999986554422 223333221 1222222 37789999
Q ss_pred EEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 126 LYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
|+..|+..+++.++|+-++.+|...|+.+-.
T Consensus 69 ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 69 LKIRDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEEcCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987654
No 68
>PF15408 PH_7: Pleckstrin homology domain
Probab=95.94 E-value=0.0028 Score=52.51 Aligned_cols=88 Identities=13% Similarity=0.217 Sum_probs=57.5
Q ss_pred EEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecC--CCCC----CcceE-
Q psy10626 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG--DYTK----RKHVF- 124 (344)
Q Consensus 52 eGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~--dy~K----RKnVF- 124 (344)
||+|++-. ...-+++|+||++.+|.||.|+.... ...+.|....+.+.. .... .-+.|
T Consensus 1 EGYLY~~E----------~~si~rRF~~L~~K~~~~~~~KGG~~-----L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G 65 (104)
T PF15408_consen 1 EGYLYRDE----------DSSIQRRFVMLRSKQFNMYEDKGGQY-----LCSFQLSSSVVSHPMVNFSQAVPNLGINAFG 65 (104)
T ss_pred CCeEEEec----------cchHHHHHHhhhhceeEEecccCCce-----eeeeehhhhhhhcccccccccCCCCCeeEEE
Confidence 58898532 23457889999999999998876531 234445444433221 1111 22344
Q ss_pred -EEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 125 -RLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 125 -rL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
-...++++..-+-|+|.+.|+.||++++.-
T Consensus 66 ~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 66 FLMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 444568777777799999999999999843
No 69
>KOG1738|consensus
Probab=95.92 E-value=0.0012 Score=69.92 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcce
Q psy10626 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123 (344)
Q Consensus 44 d~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnV 123 (344)
+.++....+|||.|+... -.....|++.||||.++.||.|..++..+ ++..|.|.+++++.+.+-.++++.
T Consensus 557 ~~l~~G~~qg~~~r~k~~-----~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~e~~~~~~~ 627 (638)
T KOG1738|consen 557 ELLGRGDRQGWLTRLKLN-----HLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAEEVLGKPEL 627 (638)
T ss_pred HHhccchhhccchhhccc-----hHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHHHhccCHhh
Confidence 346678899999976532 12467899999999999999999887654 478999999998888776555555
Q ss_pred EEE
Q psy10626 124 FRL 126 (344)
Q Consensus 124 FrL 126 (344)
|..
T Consensus 628 ~~~ 630 (638)
T KOG1738|consen 628 TGE 630 (638)
T ss_pred hcc
Confidence 543
No 70
>KOG3549|consensus
Probab=95.80 E-value=0.014 Score=59.03 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc-cCCCccEEecccEEEecCC---CCCCcc
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS-KAATSPIIIFKARCEKAGD---YTKRKH 122 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~-~a~~~~IsL~ga~v~ia~d---y~KRKn 122 (344)
..|...||+.-+- .. ....+..+.+|..|+|..+|.|....-..-. ..++....+...++.+..| ...|+|
T Consensus 279 ~qivyMGWvne~~-q~----~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~ 353 (505)
T KOG3549|consen 279 EQIVYMGWVNEGV-QN----NISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQH 353 (505)
T ss_pred ceEEEeeeccccc-cC----cccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccc
Confidence 4688899998442 11 1235667899999999999999755432111 0123334444444444443 278999
Q ss_pred eEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
||.|....|+..+|..+-+.|+..|=++.+.|.-
T Consensus 354 CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 354 CFLLQSSGGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred eEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 9999999999999999999999999999987653
No 71
>KOG1117|consensus
Probab=95.71 E-value=0.023 Score=62.68 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=63.7
Q ss_pred cCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec--C-CC--CCCcceEEEEeCCCcEEEEECCCHHHHH
Q psy10626 71 RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA--G-DY--TKRKHVFRLYCTDGSEFLFLAPSETLME 145 (344)
Q Consensus 71 RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia--~-dy--~KRKnVFrL~tpdg~eyLFqAeSeeEM~ 145 (344)
..--+.||||-|+.|++|..+....+ .+.|.+..-+|... . +| ..-.|+|+|.++.+..|+|-+++.+++.
T Consensus 516 Ee~nr~wcVlg~g~ls~fen~~S~tP----~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~ 591 (1186)
T KOG1117|consen 516 EETNRKWCVLGGGFLSYFENEKSTTP----NGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALR 591 (1186)
T ss_pred ccCCCceEEcCcchhhhhhhcCCCCC----CceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHH
Confidence 34568899999999999998876443 56777776554422 2 22 3457999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy10626 146 DWVNKISFHA 155 (344)
Q Consensus 146 eWI~AIr~aa 155 (344)
.|..+|-.|-
T Consensus 592 ~wt~aiaKhf 601 (1186)
T KOG1117|consen 592 KWTEAIAKHF 601 (1186)
T ss_pred HHHHHHHHhc
Confidence 9999997664
No 72
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=95.68 E-value=0.0034 Score=57.53 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=42.7
Q ss_pred cccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 168 DSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 168 ~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
+..+.++...|.+..+|.+++.++|+..|||||.+|.... ..+.+.|++-
T Consensus 8 ~~~~~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~ 58 (193)
T cd04382 8 DFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRG 58 (193)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcC
Confidence 3444566899999999999999999999999999998776 8888889853
No 73
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=95.55 E-value=0.0032 Score=57.36 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.+.++|.+++.++|+..|||||.+|.... ..+.+.|+.-.
T Consensus 20 ~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~ 64 (199)
T cd04390 20 RLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGE 64 (199)
T ss_pred CCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCC
Confidence 568999999999999999999999999998877 88888888643
No 74
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=95.50 E-value=0.0026 Score=57.82 Aligned_cols=45 Identities=11% Similarity=-0.030 Sum_probs=40.5
Q ss_pred cCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 174 QYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 174 ~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
....|.++++|.+++.++|+..|||||.+|.... ..+.+.|++..
T Consensus 15 ~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~ 60 (188)
T cd04383 15 GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGE 60 (188)
T ss_pred CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCC
Confidence 3578999999999999999999999999999987 88999998754
No 75
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.27 E-value=0.34 Score=41.42 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=57.8
Q ss_pred CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhc----ccCCCccEEecccEEEecCCCCCCc
Q psy10626 46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVA----SKAATSPIIIFKARCEKAGDYTKRK 121 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~----~~a~~~~IsL~ga~v~ia~dy~KRK 121 (344)
+|....+|-+..-. |++...+.=+.|.+.|=...|.|-|-..+... .......|.+.+-.+....+-...
T Consensus 2 qG~Ll~Q~~f~v~~-----~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~- 75 (114)
T cd01232 2 QGKLLLQDTFQVWD-----PKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPC- 75 (114)
T ss_pred CCceEEEccEEEEe-----CCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCc-
Confidence 45666777554322 11111223356777787888888775433210 011123445544333322222334
Q ss_pred ceEEEEeCC----CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 122 HVFRLYCTD----GSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 122 nVFrL~tpd----g~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
.|.|...+ ...|++||.|.++-+.|+..|+.+.
T Consensus 76 -kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 76 -RFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred -eEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 45555443 3699999999999999999998653
No 76
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=95.20 E-value=0.0055 Score=56.26 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=38.9
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.++.+|.+++.++|+..|||||.+|..+. ..+.+.|+..
T Consensus 14 ~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~ 57 (200)
T cd04408 14 EEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENG 57 (200)
T ss_pred CCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcC
Confidence 567999999999999999999999999999877 8888899863
No 77
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.19 E-value=0.15 Score=43.02 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=52.5
Q ss_pred ceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626 74 KSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 74 KkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
++..+.|=++.|.+-.-.... .......++|.+-.+.-..|...=+|+|.|.++. ..++|||++.++-.+||..|..
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~-~s~i~qaes~~~K~eWl~~le~ 96 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFP-ESRIYQCESARIKTEWFEELEQ 96 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCCCcCcCceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHH
Confidence 456455555555544221111 1123567788764444333434568999999987 6899999999999999999987
Q ss_pred hh
Q psy10626 154 HA 155 (344)
Q Consensus 154 aa 155 (344)
|.
T Consensus 97 a~ 98 (100)
T cd01226 97 AK 98 (100)
T ss_pred Hh
Confidence 75
No 78
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=95.18 E-value=0.0043 Score=56.48 Aligned_cols=44 Identities=7% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.++++|.+++.++|+..|||||.+|..+. ..+...|++.+
T Consensus 14 ~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~ 58 (194)
T cd04372 14 TQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDG 58 (194)
T ss_pred CCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCC
Confidence 467999999999999999999999999998766 88999999754
No 79
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.05 E-value=0.12 Score=44.59 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=57.3
Q ss_pred ceEEEEEeCCeEeEEecCchhh--cccCCCccEEecccEEEecC--C----CCCCcceEEEEeCCC-cEEEEECCCHHHH
Q psy10626 74 KSLYTVLCGQLLCFFKDQDDFV--ASKAATSPIIIFKARCEKAG--D----YTKRKHVFRLYCTDG-SEFLFLAPSETLM 144 (344)
Q Consensus 74 KkrwfVLrG~~L~fYKDeke~a--~~~a~~~~IsL~ga~v~ia~--d----y~KRKnVFrL~tpdg-~eyLFqAeSeeEM 144 (344)
+.||+.|=...|+++|...+.. +.......+.|....+.... | ..+-+|.|.|...+| ..|.|.|.++++-
T Consensus 21 k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K 100 (116)
T cd01223 21 KLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLR 100 (116)
T ss_pred ceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHH
Confidence 5899999999999999654421 11111234455544444321 2 135689999999886 7899999999999
Q ss_pred HHHHHHHHHhh
Q psy10626 145 EDWVNKISFHA 155 (344)
Q Consensus 145 ~eWI~AIr~aa 155 (344)
..|+.+|-.|.
T Consensus 101 ~kWm~al~~a~ 111 (116)
T cd01223 101 KKWLKALEMAM 111 (116)
T ss_pred HHHHHHHHHHH
Confidence 99999998664
No 80
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=95.03 E-value=0.0087 Score=55.38 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=40.7
Q ss_pred ccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626 173 SQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS 219 (344)
Q Consensus 173 s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~ 219 (344)
.....|.++++|.+++.++|+..|||||++|.... ..+...|++...
T Consensus 5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~ 52 (206)
T cd04376 5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGID 52 (206)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence 34567999999999999999999999999998877 888888887653
No 81
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=95.00 E-value=0.0075 Score=55.97 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=40.1
Q ss_pred cCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 174 QYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 174 ~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
....|.++++|.+++.++|+..|||||++|..+. +.+.+.|+..+
T Consensus 15 ~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~ 60 (207)
T cd04379 15 SRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNS 60 (207)
T ss_pred CCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCC
Confidence 3578999999999999999999999999999988 78888998643
No 82
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.91 E-value=0.066 Score=45.92 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=47.7
Q ss_pred EEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHH
Q psy10626 76 LYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152 (344)
Q Consensus 76 rwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr 152 (344)
-|+.-+|.-|.||....+.+ .+.+.|+|..++ ++.. ...+-|.+.. +|..+.|+|.+..|.+.||.+|.
T Consensus 42 AwAsqTGKGLLF~~K~~dka---~P~GiinLadas-e~~~---~g~~kF~f~~-~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKA---SPSGIINLADAS-EPEK---DGSNKFHFKI-KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred hhhhccCceEEEEecccccc---CCcceEehhhcc-cccc---CCCceEEEEe-CCceeeeecCCHHHhccHHHHhh
Confidence 35555787777775332221 357889997653 3332 2345566666 78999999999999999999885
No 83
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=94.90 E-value=0.0056 Score=56.68 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=38.5
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..|||||.+|..+. ..+.+.|++.
T Consensus 14 ~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~ 57 (211)
T cd04409 14 DGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENG 57 (211)
T ss_pred CCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcC
Confidence 467999999999999999999999999998776 8888999864
No 84
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=94.78 E-value=0.011 Score=53.48 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=39.9
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS 219 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~ 219 (344)
...|.++++|.+++.++|+..|||||.+|..+. ..+...|++.+.
T Consensus 18 ~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~ 63 (182)
T cd04381 18 IDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRES 63 (182)
T ss_pred CcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCC
Confidence 467999999999999999999999999998777 888889987554
No 85
>KOG0248|consensus
Probab=94.57 E-value=0.027 Score=60.87 Aligned_cols=81 Identities=22% Similarity=0.369 Sum_probs=58.3
Q ss_pred cccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-ccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHH
Q psy10626 69 AVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF-KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDW 147 (344)
Q Consensus 69 ~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~-ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eW 147 (344)
..+.|+++|+|++.++..||+...... ..+...+++. ++.+..+ .-...|++++.. ..|.|.++++.-..+|
T Consensus 261 ~~k~lkrr~~v~k~gqi~~y~~~~~~~--~~p~s~~d~~s~~~~~~~----~~s~~fqli~~t-~~~~~~~~s~~lt~dw 333 (936)
T KOG0248|consen 261 RIKSLKRRYVVFKNGQISFYRKHNNRD--EEPASKIDIRSVTKLEQQ----GAAYAFQLITST-DKMNFMTESERTTHDW 333 (936)
T ss_pred HHHHHHhHheeeccceEEEEEcCCCcc--ccccCcccccccceeecc----chhHHhhhhhhc-eeEEEeccChhhhhhh
Confidence 468899999999999999998665421 1245566665 3433221 234678888765 6899999999999999
Q ss_pred HHHHHHhhC
Q psy10626 148 VNKISFHAQ 156 (344)
Q Consensus 148 I~AIr~aaa 156 (344)
|+.|..+..
T Consensus 334 ~~iL~~~iK 342 (936)
T KOG0248|consen 334 VTILSAAIK 342 (936)
T ss_pred HHHHHHHHH
Confidence 998876653
No 86
>KOG3523|consensus
Probab=94.35 E-value=0.051 Score=58.04 Aligned_cols=108 Identities=24% Similarity=0.319 Sum_probs=67.1
Q ss_pred CCCCeEEEEEEeeeeeeccCC-ccc-----cccCCceEEEEEeCCeEeEEecCchhhccc---CCCccEEecccE--EEe
Q psy10626 45 QLPPVEIQGVLERKHELQSGG-KKA-----AVRSWKSLYTVLCGQLLCFFKDQDDFVASK---AATSPIIIFKAR--CEK 113 (344)
Q Consensus 45 ~l~~V~KeGwL~RKq~lesgG-KKs-----~~RsWKkrwfVLrG~~L~fYKDeke~a~~~---a~~~~IsL~ga~--v~i 113 (344)
.++.|-..-||.++++++... ++. ..+.-+.+|+.|=++.|.+.|-+....-.. ++-..|.+..+. -..
T Consensus 465 ~~PLiS~sRwLvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~l 544 (695)
T KOG3523|consen 465 AFPLVSQSRWLVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKL 544 (695)
T ss_pred eeeeccchhhhhhccccceeecccccchhhcccccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCC
Confidence 344555667888777764432 221 135567999999999999988665432111 111222222221 001
Q ss_pred cC---CCCCCcceEEEEeC---C--CcEEEEECCCHHHHHHHHHHHH
Q psy10626 114 AG---DYTKRKHVFRLYCT---D--GSEFLFLAPSETLMEDWVNKIS 152 (344)
Q Consensus 114 a~---dy~KRKnVFrL~tp---d--g~eyLFqAeSeeEM~eWI~AIr 152 (344)
.. ....++|+|.|..- + ..+|||+|+++.||+.||.|+.
T Consensus 545 p~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 545 PGGANSLSSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred CCCCcccccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 11 12457899998853 2 2589999999999999999997
No 87
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=94.26 E-value=0.014 Score=53.00 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=38.5
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..||+||.+|..+. ..+++.|++-
T Consensus 13 ~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~ 56 (186)
T cd04407 13 TSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQAD 56 (186)
T ss_pred CCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcC
Confidence 467999999999999999999999999999888 8888888764
No 88
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=94.19 E-value=0.01 Score=54.53 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=38.1
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.++++|.+++.++|+..|||||.+|.... ..+...|++.
T Consensus 14 ~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~ 57 (203)
T cd04378 14 DEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENG 57 (203)
T ss_pred CCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcC
Confidence 567999999999999999999999999998866 7788888764
No 89
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=93.99 E-value=0.018 Score=53.83 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=39.0
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.++++|.+++.+.|+..|||||.+|.... +.+.+.|+.-
T Consensus 30 ~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~ 73 (225)
T cd04396 30 GYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTP 73 (225)
T ss_pred CCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccC
Confidence 567999999999999999999999999999877 8889999864
No 90
>KOG4424|consensus
Probab=93.83 E-value=0.1 Score=55.53 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=69.6
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc--CCCccEEecccEEEecCCCCCCcceE
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK--AATSPIIIFKARCEKAGDYTKRKHVF 124 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--a~~~~IsL~ga~v~ia~dy~KRKnVF 124 (344)
-.+.|||.|. |-. .....=..+|++|=++.|.|.+-... ..+. .....+++.|+.+. ..++...+|.|
T Consensus 270 reLiKEG~l~-Kis-------~k~~~~qeRylfLFNd~~lyc~~r~~-~~~~k~~~r~~~s~~~~~v~-~~~~~~~~~tF 339 (623)
T KOG4424|consen 270 RELIKEGQLQ-KIS-------AKNGTTQERYLFLFNDILLYCKPRKR-LPGSKYEVRARCSISHMQVQ-EDDNEELPHTF 339 (623)
T ss_pred HHHhhcccee-eee-------ccCCCcceeEEEEehhHHHhhhhhhh-cccceeccceeeccCcchhc-ccccccCCceE
Confidence 3477999997 431 12355689999999988888776653 2221 12233556665432 23556789999
Q ss_pred EEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 125 RLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 125 rL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
.|+-.+ +..-|+|.++.+-.+||++|+.++.
T Consensus 340 ~~~G~~-r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 340 ILTGKK-RGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred EEeccc-ceEEeecCchhhHHHHHHHHHHHHH
Confidence 999755 6789999999999999999997753
No 91
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=93.76 E-value=0.019 Score=52.24 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++..+|+..|||||.+|..+. ..+...|+.-
T Consensus 13 ~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~ 56 (186)
T cd04406 13 RSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTD 56 (186)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccC
Confidence 467999999999999999999999999998887 8888888864
No 92
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=93.70 E-value=0.013 Score=53.86 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=38.8
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.++.+|.+++.++|+..|||||++|..+. +.+.+.|++-
T Consensus 14 ~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~ 57 (196)
T cd04387 14 SKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTN 57 (196)
T ss_pred CCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCC
Confidence 567999999999999999999999999999877 8888888864
No 93
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.46 E-value=0.57 Score=38.80 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=53.4
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCC-eEeEEecCchhhcccCCCccEEecc-cE-EEecCCCCCCcceEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ-LLCFFKDQDDFVASKAATSPIIIFK-AR-CEKAGDYTKRKHVFR 125 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~-~L~fYKDeke~a~~~a~~~~IsL~g-a~-v~ia~dy~KRKnVFr 125 (344)
|.++|.+.++. +. .+++|-++|... .|+|+ |..... -.+-|.+.. .. ++. +..+.|.
T Consensus 1 Il~~g~v~Kr~---------gl-f~kkR~LiLTd~PrL~yv-dp~~~~----~KgeIp~s~~~l~v~~-----~~~~~F~ 60 (89)
T cd01262 1 ILKIGAVKKRK---------GL-FAKKRQLILTNGPRLIYV-DPVKKV----VKGEIPWSDVELRVEV-----KNSSHFF 60 (89)
T ss_pred Cceeeeeeehh---------cc-ccceeeEEEecCceEEEE-cCCcCe----EEeEecccccceEEEE-----ecCccEE
Confidence 45788887553 22 568899999865 55444 443221 134455554 22 222 2346899
Q ss_pred EEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 126 LYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
|.+++ ++|.|.-. ......|+.+|..+.
T Consensus 61 I~Tp~-rty~leD~-~~~a~~W~~~I~~~~ 88 (89)
T cd01262 61 VHTPN-KVYSFEDP-KGRASQWKKAIEDLQ 88 (89)
T ss_pred EECCC-ceEEEECC-CCCHHHHHHHHHHHh
Confidence 99887 78888644 467788999998653
No 94
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=93.20 E-value=0.026 Score=52.22 Aligned_cols=44 Identities=7% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.+.++|.+++.++|+..|||||.+|.... +.+.+.|+.-+
T Consensus 25 ~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~ 69 (213)
T cd04397 25 LRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNP 69 (213)
T ss_pred CCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCC
Confidence 357999999999999999999999999997766 88888888643
No 95
>KOG3543|consensus
Probab=92.94 E-value=0.035 Score=59.68 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=65.3
Q ss_pred EEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEe-----EEecCchhhcccCCCccEEecccEEEecC---CCCCCc
Q psy10626 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC-----FFKDQDDFVASKAATSPIIIFKARCEKAG---DYTKRK 121 (344)
Q Consensus 50 ~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~-----fYKDeke~a~~~a~~~~IsL~ga~v~ia~---dy~KRK 121 (344)
...|+|+-= |+ ..++.|+++||||..-.-| -|..++. .+...|.|.|.+++... +....+
T Consensus 465 khsgylyai------g~-nvwkrwkkrffvlvqvsqytfamcsyrekka-----epqel~qldgytvdytdp~pglqgg~ 532 (1218)
T KOG3543|consen 465 KHSGYLYAI------GR-NVWKRWKKRFFVLVQVSQYTFAMCSYREKKA-----EPQELIQLDGYTVDYTDPSPGLQGGK 532 (1218)
T ss_pred ccceeehhh------hh-HHHHHhHhhEEEEEEhhhhhhHhhhhhhccc-----ChHHHhhccCeeeccCCCCCccccch
Confidence 346888631 22 2489999999999753322 3333221 24678899999888543 224456
Q ss_pred ceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 122 HVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 122 nVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
+-|...- .|.+..|+.+|+.|..-|++|+-+|.+
T Consensus 533 ~ffnavk-egdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 533 HFFNAVK-EGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred HHHHHhc-cCceEEeccCchhhhhHHHHHHHHhhC
Confidence 6676543 568999999999999999999998876
No 96
>KOG2070|consensus
Probab=92.92 E-value=1.8 Score=45.92 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=61.7
Q ss_pred ceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626 74 KSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 74 KkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
+.||++|=-+.|.|+.-...-. .--.++.+.+.|.+|....+-...++.|.|.-.--...+-.++.+.|+++|+.+++.
T Consensus 326 ~dRy~~LF~~~llflsvs~rMs-~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 326 KDRYLLLFPNVLLFLSVSPRMS-GFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred hhheeeeccceeeeeEeccccc-hhhhccccccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 3889999988888887543321 111256788889888876666677889999877667788899999999999999995
Q ss_pred hh
Q psy10626 154 HA 155 (344)
Q Consensus 154 aa 155 (344)
..
T Consensus 405 ~~ 406 (661)
T KOG2070|consen 405 QT 406 (661)
T ss_pred cc
Confidence 43
No 97
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=92.64 E-value=0.046 Score=49.53 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=38.5
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.+.|+..||+||.+|.... ..+.+.|++.
T Consensus 13 ~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~ 56 (185)
T cd04373 13 KPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQD 56 (185)
T ss_pred CCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcC
Confidence 578999999999999999999999999998777 7788888864
No 98
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=92.37 E-value=0.049 Score=49.31 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=38.4
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.+.++|.+++.++|+..|||||.+|.... ..+...|++.+
T Consensus 14 ~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~ 58 (187)
T cd04403 14 STVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDE 58 (187)
T ss_pred CCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999876 77777787644
No 99
>KOG1739|consensus
Probab=92.23 E-value=0.22 Score=52.24 Aligned_cols=94 Identities=20% Similarity=0.352 Sum_probs=63.4
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL 126 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL 126 (344)
+.+...|.|.+... -...|+.||+||+.+.|.+|+.+.+..-+ --+.|.|..+.+... .-....|-|
T Consensus 22 gw~e~~G~lskwtn--------yi~gwqdRyv~lk~g~Lsyykse~E~~hG--cRgsi~l~ka~i~ah---EfDe~rfdI 88 (611)
T KOG1739|consen 22 GWVERCGVLSKWTN--------YIHGWQDRYVVLKNGALSYYKSEDETEHG--CRGSICLSKAVITAH---EFDECRFDI 88 (611)
T ss_pred Cchhhcceeeeeec--------ccccccceEEEEcccchhhhhhhhhhhcc--cceeeEeccCCcccc---cchhheeee
Confidence 34556666653221 15789999999999999999988663211 123466665544322 223567888
Q ss_pred EeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 127 YCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.+.+ ..+.+.|.+.++.+.||.+|.-.
T Consensus 89 svn~-nv~~lra~~~~hr~~w~d~L~wm 115 (611)
T KOG1739|consen 89 SVND-NVWYLRAQDPDHRQQWIDALEWM 115 (611)
T ss_pred Eecc-ceeeehhcCcHHHHHHHHHHHHH
Confidence 8875 67888888888888999998643
No 100
>PF15411 PH_10: Pleckstrin homology domain
Probab=92.02 E-value=2.7 Score=36.06 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcc---------cCCCccEEecccE-----E
Q psy10626 46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVAS---------KAATSPIIIFKAR-----C 111 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~---------~a~~~~IsL~ga~-----v 111 (344)
+|.....|-+.... ...|+.++|.|=..-|+++|+....... ......+.|.|.+ -
T Consensus 4 fG~Lll~g~~~V~k----------~~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~ 73 (116)
T PF15411_consen 4 FGELLLHGTLTVGK----------DDSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNIT 73 (116)
T ss_pred ccceEEccEEEEEe----------CCcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeee
Confidence 55666667666432 2679999999999999999987654331 0112344444422 1
Q ss_pred EecCCCCCCcceEEEEe---CCCcEEEEECCCHHHHHHHHHHH
Q psy10626 112 EKAGDYTKRKHVFRLYC---TDGSEFLFLAPSETLMEDWVNKI 151 (344)
Q Consensus 112 ~ia~dy~KRKnVFrL~t---pdg~eyLFqAeSeeEM~eWI~AI 151 (344)
++........|+..|.- ++-..|.|...++++|+.|-++|
T Consensus 74 ~v~~~s~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 74 EVSSSSKPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred eeeccCCCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 12222234568888887 34568999999999999998875
No 101
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.80 E-value=0.051 Score=49.13 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.++++|.+++.++|+..+||||++|.... +.+...|++.
T Consensus 13 ~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~ 56 (184)
T cd04385 13 NDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKD 56 (184)
T ss_pred CCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcC
Confidence 678999999999999999999999999998766 7788888763
No 102
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.78 E-value=0.036 Score=50.75 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=38.0
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..||+||.+|..+. ..+...|++-
T Consensus 18 ~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g 61 (203)
T cd04386 18 REIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAG 61 (203)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCC
Confidence 457899999999999999999999999999887 7888888763
No 103
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.68 E-value=0.054 Score=50.18 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=38.0
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.+.|+..|||||.+|.... +.+.+.|+..
T Consensus 20 ~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~ 63 (216)
T cd04391 20 SKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAK 63 (216)
T ss_pred CCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999887 7777777754
No 104
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.44 E-value=0.052 Score=50.23 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=34.2
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-ccccccccc
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEE 216 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~ 216 (344)
..+..++++|.+++.+.|+..|||||++|..+. ..+...|.+
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d 68 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLD 68 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhC
Confidence 456778999999999999999999999997666 666665433
No 105
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.29 E-value=0.064 Score=50.12 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..|||||.+|.... ..+.+.|+..
T Consensus 18 ~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~ 61 (220)
T cd04375 18 QPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESS 61 (220)
T ss_pred CCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcC
Confidence 467999999999999999999999999998777 7788888764
No 106
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.20 E-value=0.055 Score=49.56 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=38.1
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPSP 220 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~~ 220 (344)
...|.++++|.+++.++|.. |||||.+|.... ..+...|++-..+
T Consensus 16 ~~iP~il~~~i~~l~~~g~~-EGIFR~sG~~~~i~~l~~~~d~~~~~ 61 (195)
T cd04384 16 QDVPQVLKSCTEFIEKHGIV-DGIYRLSGIASNIQRLRHEFDSEQIP 61 (195)
T ss_pred CCCChHHHHHHHHHHHcCCC-cCeeeCCCCHHHHHHHHHHHcCCCCC
Confidence 46799999999999999985 899999998766 8889999875443
No 107
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=91.05 E-value=0.081 Score=48.17 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=37.8
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.++++|.+++-+.|+..|||||.+|..+. ..+...|+...
T Consensus 16 ~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~ 60 (196)
T cd04395 16 PYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGG 60 (196)
T ss_pred CCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCC
Confidence 568999999999999999999999999998777 77777776543
No 108
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=90.99 E-value=0.053 Score=48.91 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=37.9
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.++++|.+++.+.|+..||+||.+|.... ..+...|++-+
T Consensus 14 ~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~ 58 (192)
T cd04398 14 DNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDP 58 (192)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCC
Confidence 467999999999999999999999999999876 77777777543
No 109
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=90.53 E-value=5.9 Score=33.77 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=50.4
Q ss_pred ccCCceEEEEEeC--CeEeEEecCchhhc-ccCCCccEEecccEEEecC-CCC------CCcceEEEEeCCCcEEEEECC
Q psy10626 70 VRSWKSLYTVLCG--QLLCFFKDQDDFVA-SKAATSPIIIFKARCEKAG-DYT------KRKHVFRLYCTDGSEFLFLAP 139 (344)
Q Consensus 70 ~RsWKkrwfVLrG--~~L~fYKDeke~a~-~~a~~~~IsL~ga~v~ia~-dy~------KRKnVFrL~tpdg~eyLFqAe 139 (344)
....+.|||-|.. ..|++...+..... .......|.|..-..-... ... ...++|.|.+++ +..-|.|+
T Consensus 27 ~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~-R~L~l~a~ 105 (123)
T PF12814_consen 27 SEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD-RSLDLTAP 105 (123)
T ss_pred CCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC-eEEEEEeC
Confidence 5688999999986 45555443321111 0111233444432111111 111 134667777665 89999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy10626 140 SETLMEDWVNKISFHA 155 (344)
Q Consensus 140 SeeEM~eWI~AIr~aa 155 (344)
+.++-+-|+.+|+..+
T Consensus 106 s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 106 SRERHEIWFNALRYLL 121 (123)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998654
No 110
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=89.65 E-value=0.14 Score=47.60 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=39.3
Q ss_pred ccCCCcchhhhhcccccccccCCCccccCCCccc-----ccccccccccC
Q psy10626 173 SQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSN-----LRNNHTSYEEL 217 (344)
Q Consensus 173 s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~-----~~~~~~~~~~~ 217 (344)
.....|.+..+|.+++.++|+.++|+||.+|... ++.+.+.+++-
T Consensus 46 ~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~ 95 (220)
T cd04380 46 VPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTG 95 (220)
T ss_pred CccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCC
Confidence 3468899999999999999999999999999988 67777777764
No 111
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.13 E-value=1.6 Score=36.66 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=53.7
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchh--h-cccCCCccEEecccEEEecCCCCCCcceEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDF--V-ASKAATSPIIIFKARCEKAGDYTKRKHVFR 125 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~--a-~~~a~~~~IsL~ga~v~ia~dy~KRKnVFr 125 (344)
..++|+|..=+ .+.=+.+-+.|=++.|.+-+=.... . ....-.-.|+|.+-.+... .|+
T Consensus 3 Lv~eg~lvel~----------~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~ 64 (96)
T cd01228 3 LVKDSFLVELV----------EGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFR 64 (96)
T ss_pred ccccceeeeeh----------hCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------hhh
Confidence 45788887321 2223556677777777765532111 1 1111122466665433221 267
Q ss_pred EEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 126 LYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 126 L~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
+...++..|.|.|.|..|-.+|+.+|+..
T Consensus 65 ~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 65 IHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred ccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 76767899999999999999999999753
No 112
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=88.66 E-value=0.13 Score=46.50 Aligned_cols=44 Identities=5% Similarity=0.029 Sum_probs=37.9
Q ss_pred CCCcchhhhhcccccccc-cCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEE-VGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g-~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.++.+|.+++.+.| ...||+||.+|..+. ..+.+.|++.+
T Consensus 20 ~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~ 65 (190)
T cd04400 20 RDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEY 65 (190)
T ss_pred CCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCC
Confidence 467999999999988765 799999999999777 88888898754
No 113
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=88.56 E-value=0.14 Score=46.27 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..+|+||.+|..+. ..+.+.|++.
T Consensus 13 ~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~ 56 (186)
T cd04377 13 RSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTD 56 (186)
T ss_pred CCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999999998887 6777777654
No 114
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=88.51 E-value=0.15 Score=47.30 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=33.9
Q ss_pred chhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 179 TIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 179 ~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
..+-+|.+++.+ |+..|||||+||.... +.+.+.|+...
T Consensus 11 ~~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~ 50 (208)
T cd04392 11 AQIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGT 50 (208)
T ss_pred HHHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCC
Confidence 367899999988 9999999999999777 89999998643
No 115
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=88.37 E-value=0.16 Score=46.19 Aligned_cols=43 Identities=7% Similarity=-0.034 Sum_probs=37.1
Q ss_pred CCCcchhhhhccccc-ccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIF-EEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~-e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+..+|.+++. .+|+..|||||.+|.... ..+.+.|++.
T Consensus 19 ~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~ 63 (187)
T cd04389 19 LKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQW 63 (187)
T ss_pred CCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcC
Confidence 467999999999865 579999999999999877 8888888874
No 116
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=88.26 E-value=0.15 Score=46.33 Aligned_cols=43 Identities=2% Similarity=-0.031 Sum_probs=38.1
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+..+|.+++.++|+..||+||.+|..+. ..+...|+..
T Consensus 13 ~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~ 56 (192)
T cd04402 13 DNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSG 56 (192)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCC
Confidence 467999999999999999999999999999996 7777777653
No 117
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=87.78 E-value=0.16 Score=46.02 Aligned_cols=43 Identities=5% Similarity=-0.000 Sum_probs=38.1
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..||+||.+|-.+. ..+...|++-
T Consensus 18 ~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~ 61 (189)
T cd04393 18 NGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG 61 (189)
T ss_pred CCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999999999999888 7778888763
No 118
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=87.75 E-value=0.16 Score=46.07 Aligned_cols=43 Identities=5% Similarity=0.071 Sum_probs=38.0
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
...|.+.++|.+++.++|+..||+||.+|..+. ..+.+.|++.
T Consensus 21 ~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~ 64 (195)
T cd04404 21 EPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG 64 (195)
T ss_pred CCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCC
Confidence 467999999999999999999999999999876 7787888763
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.61 E-value=3.4 Score=36.45 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=48.8
Q ss_pred ceEEEEEeCCeEeEEecCchhhc-----ccCCCccEEecccEEEecCCCCCCcceEEEEeCCC-cEEEEECCCHHHHHHH
Q psy10626 74 KSLYTVLCGQLLCFFKDQDDFVA-----SKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDG-SEFLFLAPSETLMEDW 147 (344)
Q Consensus 74 KkrwfVLrG~~L~fYKDeke~a~-----~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL~tpdg-~eyLFqAeSeeEM~eW 147 (344)
+.|++.|=...+.|.|-..+... .......|.+..-.+.... ..-...|+|...++ ..|.|||.|.+.-+.|
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v--~gd~~kFeiw~~~~~~~yilqA~t~e~K~~W 107 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENV--KGDTKKFEIWYNAREEVYILQAPTPEIKAAW 107 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccC--CCCccEEEEEeCCCCcEEEEEcCCHHHHHHH
Confidence 57888888888888886543211 1111122333222111111 12244677776543 5899999999999999
Q ss_pred HHHHHHhh
Q psy10626 148 VNKISFHA 155 (344)
Q Consensus 148 I~AIr~aa 155 (344)
+..|+...
T Consensus 108 v~~I~~iL 115 (133)
T cd01227 108 VNEIRKVL 115 (133)
T ss_pred HHHHHHHH
Confidence 99998653
No 120
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=87.27 E-value=0.25 Score=45.48 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=36.6
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
...|.+.++|.+++.+ ++..|||||.+|.... ..+...|++-.
T Consensus 18 ~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~ 61 (202)
T cd04394 18 GNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGE 61 (202)
T ss_pred CCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCC
Confidence 4679999999999854 6999999999998887 88888888743
No 121
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=87.22 E-value=0.21 Score=42.74 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=37.6
Q ss_pred cchhhhhcccccccccCCCccccCCCcccc-cccccccccCCCC
Q psy10626 178 TTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPSP 220 (344)
Q Consensus 178 p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~~ 220 (344)
|.+..+|.+++.+.|+..+|+||.+|.... ..+.+.++.....
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~ 44 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDI 44 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCC
Confidence 567889999999999999999999999887 8888888877654
No 122
>PF15404 PH_4: Pleckstrin homology domain
Probab=85.57 E-value=0.93 Score=42.04 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=27.4
Q ss_pred EEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCc
Q psy10626 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQD 92 (344)
Q Consensus 51 KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDek 92 (344)
+.|.|++|. ..-..+++||+||+.+.|++|..-.
T Consensus 1 ~sG~LY~K~--------~khs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKP--------RKHSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecC--------CCCCCceEEEEEEeCCEEEEEEEEe
Confidence 468999875 1356799999999999999998743
No 123
>KOG4269|consensus
Probab=82.77 E-value=0.36 Score=53.82 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=39.5
Q ss_pred CCCcchhhhhccccc-ccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIF-EEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~-e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
+-.|.+|-||++-+- .+|..|+||||++|.+.. +.|+..|++-
T Consensus 917 s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~ 961 (1112)
T KOG4269|consen 917 SGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDEN 961 (1112)
T ss_pred cCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccc
Confidence 567999999999977 799999999999999998 9999999986
No 124
>KOG1737|consensus
Probab=82.16 E-value=1.5 Score=48.69 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=84.5
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCCCCCcceEEE
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL 126 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy~KRKnVFrL 126 (344)
.....+|||.+.. .-.+.|.++||+|.++.|.||++...... ...+.+.+..+.+.- .... -+.+
T Consensus 75 ~~~~~~g~l~k~~--------n~~~~~~~r~f~l~~g~ls~~~~~~~~~~--~~~~~~~~~~a~i~~---~~~~--~~~~ 139 (799)
T KOG1737|consen 75 SGASLEGILLKWR--------NYSKGPSSRWFVLSGGLLSYYFDNSFSKT--TCGGGINLVTAWIQN---GERM--DICS 139 (799)
T ss_pred ccccccceeeccc--------cccCCcccceEEecCcceeeeccCCcccc--CCCCccccccccccc---CCCc--ccch
Confidence 3456789998542 34689999999999999999998865332 122344443332211 1111 1111
Q ss_pred EeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCCCCcccccccccccccCCCcch--hh------hhcccccccccCCCcc
Q psy10626 127 YCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTI--QE------KKKTSIFEEEVGPGGY 198 (344)
Q Consensus 127 ~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~se~L~s~e~~~~~s~~t~p~~--~e------k~~d~~~e~g~~~~Gl 198 (344)
...+...|+..+.+..+-+.|+.++..+-.....+. ..++..... ..+.... .+ ..-+...+.++...++
T Consensus 140 ~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (799)
T KOG1737|consen 140 VDGSCQIYLVELSKKLQRQGWLHALELAPLIAVEQT-SEYENENKS-VMTKRIPLSIAVISVAQETREINVDVLRLLSSL 217 (799)
T ss_pred hhcccchhhhhhhHHHhhcchhhhhhhccchhhhcc-ccccccccc-cccccccchhhhhcccccchhhhhhhhhhcccc
Confidence 111135688888999999999999987743332222 211111000 0000000 00 1112344566777888
Q ss_pred ccCCCcccccccccccccC
Q psy10626 199 INSDGYSNLRNNHTSYEEL 217 (344)
Q Consensus 199 ~~~~g~~~~~~~~~~~~~~ 217 (344)
+..-+++.+|.+....+..
T Consensus 218 ~~~~~~~~~r~l~~~~~~~ 236 (799)
T KOG1737|consen 218 PNLTGQLLLRELNALLEDK 236 (799)
T ss_pred ccchhhhhhhhhccccccc
Confidence 8888888877775444433
No 125
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=81.61 E-value=15 Score=32.20 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 118 TKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 118 ~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
.+..+-|.+..- .|..|.|.|+|+.+.++|+++|..+
T Consensus 96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 344555666554 3456899999999999999999754
No 126
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=81.40 E-value=0.53 Score=41.11 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=37.3
Q ss_pred CcchhhhhcccccccccCCCccccCCCcccc-cccccccccCCCC
Q psy10626 177 GTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPSP 220 (344)
Q Consensus 177 ~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~~ 220 (344)
.|.+.++|.+++.+.|...+|+||.+|.... ..+...+++....
T Consensus 3 vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~ 47 (174)
T smart00324 3 IPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDP 47 (174)
T ss_pred CChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCC
Confidence 5889999999999999999999999999876 6777777765443
No 127
>KOG1264|consensus
Probab=81.19 E-value=2.1 Score=47.78 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=40.2
Q ss_pred EEecccEEEec-CCCCCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhCC
Q psy10626 104 IIIFKARCEKA-GDYTKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQL 157 (344)
Q Consensus 104 IsL~ga~v~ia-~dy~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaaL 157 (344)
.++.-+.+..+ .+...+-+||.|... +...|+|.|++++|+.+|+++|+++++.
T Consensus 856 ~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~ 912 (1267)
T KOG1264|consen 856 LDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK 912 (1267)
T ss_pred ccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence 34443433333 355678899998864 4468999999999999999999988753
No 128
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=81.07 E-value=0.36 Score=40.92 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=33.4
Q ss_pred cchhhhhcccccccccCCCccccCCCcccc-cccccccccCCC
Q psy10626 178 TTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELPS 219 (344)
Q Consensus 178 p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~~ 219 (344)
|.+...|.+.+.+.|+..+|+||.+|...- ..+.+.|+.-..
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~ 43 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEP 43 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhc
Confidence 567889999999999999999999998766 777777776554
No 129
>KOG3551|consensus
Probab=79.20 E-value=1.6 Score=45.16 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhccc-CCCccEEe-----cccEEEecCCCC
Q psy10626 45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK-AATSPIII-----FKARCEKAGDYT 118 (344)
Q Consensus 45 ~l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~-a~~~~IsL-----~ga~v~ia~dy~ 118 (344)
.++.|...|||. ++.. .+ +...|+-.+++|+...|.+|..-....+.- .+.....| -++.-.......
T Consensus 288 ~t~evkHiGWLa-eq~~-~~----G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~ 361 (506)
T KOG3551|consen 288 NTSEVKHIGWLA-EQVS-GG----GISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIK 361 (506)
T ss_pred cccchhhhhhHH-hhcc-CC----ChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcC
Confidence 356788899998 4432 22 267899999999999999997655443210 11111111 111100001111
Q ss_pred CCcceEEEEeC---CCcEEEEECCCHHHHHHHHHHHH
Q psy10626 119 KRKHVFRLYCT---DGSEFLFLAPSETLMEDWVNKIS 152 (344)
Q Consensus 119 KRKnVFrL~tp---dg~eyLFqAeSeeEM~eWI~AIr 152 (344)
.-.-+|.++|. +-.+|+|.+++..||-.|.+.|-
T Consensus 362 g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslV 398 (506)
T KOG3551|consen 362 GLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLV 398 (506)
T ss_pred CceEEEEEecccccceEEEEEEeccHHHHHHHHHHHH
Confidence 12247888875 33689999999999999999885
No 130
>KOG3564|consensus
Probab=74.32 E-value=0.88 Score=47.91 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=42.6
Q ss_pred ccccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 167 DDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 167 e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
.++..+..++.|.++=-||..|-.+|+.++||+|++|++.- +.|...|+.-
T Consensus 352 ~DF~~s~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~ 403 (604)
T KOG3564|consen 352 ADFAPSTAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRG 403 (604)
T ss_pred hhhcccccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhcc
Confidence 35555566888999999999999999999999999999877 5588888753
No 131
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=72.13 E-value=1.2 Score=41.42 Aligned_cols=46 Identities=4% Similarity=-0.190 Sum_probs=36.6
Q ss_pred CCCcchhhhhcccccccccCC------CccccCCCcccc-cccccccccCCCC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGP------GGYINSDGYSNL-RNNHTSYEELPSP 220 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~------~Gl~~~~g~~~~-~~~~~~~~~~~~~ 220 (344)
...|.++++|.+++.+++++. .|+||.||..+. ..|.+.|++..-.
T Consensus 14 ~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~ 66 (212)
T cd04399 14 KVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKP 66 (212)
T ss_pred CCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCc
Confidence 468999999999999865432 399999999775 8888999875433
No 132
>KOG4807|consensus
Probab=70.61 E-value=0.04 Score=56.41 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=61.6
Q ss_pred ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCCC-CCCcceEEEEeCCCcEEEEECCCHHHHHHHH
Q psy10626 70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDY-TKRKHVFRLYCTDGSEFLFLAPSETLMEDWV 148 (344)
Q Consensus 70 ~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~dy-~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI 148 (344)
.-.|++.||||....|-+|.|.-.... -...+.|+|+.|+-. ..| ..+.|-|+|-+-| ..|-|.|-+......||
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~-~~L~~~~~LR~C~~v--~e~a~q~nY~~~i~~~~-~~~tL~~~~s~Ir~~~~ 107 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEA-DELDGEIDLRSCTDV--TEYAVQRNYGFQIHTKD-AVYTLSAMTSGIRRNWI 107 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhc-ccCCccccHHHHHHH--HHHHHHhccceeecccc-hhhhhHHHHHHHHHHHH
Confidence 456999999999999999988754321 123567899887622 122 4567889998876 68999999999999999
Q ss_pred HHHHHh
Q psy10626 149 NKISFH 154 (344)
Q Consensus 149 ~AIr~a 154 (344)
.+++..
T Consensus 108 ~A~~kT 113 (593)
T KOG4807|consen 108 EALRKT 113 (593)
T ss_pred HHHHhc
Confidence 999854
No 133
>KOG4047|consensus
Probab=70.07 E-value=3 Score=43.32 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=53.0
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEe------EEecCchhhcccCCC----ccEEecccEEE-ecCC
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC------FFKDQDDFVASKAAT----SPIIIFKARCE-KAGD 116 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~------fYKDeke~a~~~a~~----~~IsL~ga~v~-ia~d 116 (344)
.+.|.|++..+. .|.+.++|.++|++|..+.+. +|..+..... .-.. ..+.|..+..- ...-
T Consensus 7 ~~~k~g~~~~~~------~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~-~~~~~~~rR~~~ls~~~S~e~~~~ 79 (429)
T KOG4047|consen 7 CLVKDGVPDNHR------NKFKVKNVRDDGAELGSGSMELTARLEILESRGRESV-RWPYRCLRRYGYLSNLFSFESGRR 79 (429)
T ss_pred cccccCccchhh------hhhccccccccceeeeccccccchhhhhhhccCCccc-ccchhcceeeEeeccceeeecccc
Confidence 467888887543 356688999999999864432 3321111000 0001 22344444322 2222
Q ss_pred CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 117 y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
..+..-+|...+.+..+ +|-+.+.-+-.+||++|..-
T Consensus 80 ~~~~~~i~~~f~~~a~e-~~~~~q~l~~~~w~~~i~~~ 116 (429)
T KOG4047|consen 80 CQTGPGITAFFCDRAEE-LFNMLQDLMQANWINAIEEP 116 (429)
T ss_pred cccCCCceEEEecchHH-HHHHHHHHHhhhhhhhhhhc
Confidence 23333334433334344 77777777778899999744
No 134
>KOG4424|consensus
Probab=69.44 E-value=5.1 Score=43.14 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=61.9
Q ss_pred ccCCceEEEEEe---CCeEeEEecCchhhcccCCCccEEecccEEEecCC--CCCCcceEEEEeCCCcEEEEECCCHHHH
Q psy10626 70 VRSWKSLYTVLC---GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD--YTKRKHVFRLYCTDGSEFLFLAPSETLM 144 (344)
Q Consensus 70 ~RsWKkrwfVLr---G~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d--y~KRKnVFrL~tpdg~eyLFqAeSeeEM 144 (344)
...|...|++.- ...++.|...++. .+...|.|.++.+.+... -...-|+|.+...- ..|+|.|+|++--
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv----~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~-~~~~~~a~~~q~q 584 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDV----RAQATIPLPGVEVTIPEFVRREDLFHVFKLVQSH-LSWHLAADDEQLQ 584 (623)
T ss_pred CccceeeeeeccCCCCccccccCCcccc----ccccccccCccccCCCcccccchhcchhhhhhhc-ceeeeccCCHHHH
Confidence 477999999874 4678888766653 246788999987764432 23456788877554 5899999999999
Q ss_pred HHHHHHHHHhhC
Q psy10626 145 EDWVNKISFHAQ 156 (344)
Q Consensus 145 ~eWI~AIr~aaa 156 (344)
+.|+..|..|+.
T Consensus 585 q~wl~~l~~A~~ 596 (623)
T KOG4424|consen 585 QRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHhhhc
Confidence 999999998875
No 135
>KOG1450|consensus
Probab=69.06 E-value=4 Score=44.38 Aligned_cols=95 Identities=8% Similarity=-0.077 Sum_probs=69.2
Q ss_pred cceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhhCCCCCCcccccccccc--------cccCCCcchhhhhcccccccc
Q psy10626 121 KHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQK--------VSQYTGTTIQEKKKTSIFEEE 192 (344)
Q Consensus 121 KnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aaaL~~se~L~s~e~~~~--------~s~~t~p~~~ek~~d~~~e~g 192 (344)
...|.|.+..|.++.-++.....+..|+........+.+ -...+++..|| .-+.++|.++-+|-..|-..|
T Consensus 409 ~~ss~ist~~~~~~~~~~~~~~~l~~~~s~rp~v~s~~~-~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~G 487 (650)
T KOG1450|consen 409 GLSSPISTTLGPECHEQQDPQKKLTKNFSTRPIVQSSRE-PGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFG 487 (650)
T ss_pred cccccceecCCcccccccchHHHHHHhhhccchhhhccc-cCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhc
Confidence 356888899999999999999999999988765443322 11223333333 345799999999999999999
Q ss_pred cCCCccccCCCcccc-ccccccccc
Q psy10626 193 VGPGGYINSDGYSNL-RNNHTSYEE 216 (344)
Q Consensus 193 ~~~~Gl~~~~g~~~~-~~~~~~~~~ 216 (344)
+...|++|.||---. -.|...|+|
T Consensus 488 Ld~~GiYRVsgnl~~Vnklr~~~d~ 512 (650)
T KOG1450|consen 488 LDSDGIYRVSGNLASVNKLREQSDQ 512 (650)
T ss_pred ccCCceeeecchHHHHHHHHHhcCc
Confidence 999999998885443 334444553
No 136
>KOG3727|consensus
Probab=62.61 E-value=1.6 Score=46.83 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=51.0
Q ss_pred cCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEec-CCCCCCcceEEEE--eCCCcEEEEECCCHHHHHHH
Q psy10626 71 RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKA-GDYTKRKHVFRLY--CTDGSEFLFLAPSETLMEDW 147 (344)
Q Consensus 71 RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia-~dy~KRKnVFrL~--tpdg~eyLFqAeSeeEM~eW 147 (344)
+.|.++|++.....+.+|+.. .++..+|++.||.+... .+-..+-+.|.|. .+...++++-++++.+--.|
T Consensus 377 r~f~t~~dl~~~~~~s~~~s~------~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~W 450 (664)
T KOG3727|consen 377 RYFFTFRDLHLSLYKSSEDSR------GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARW 450 (664)
T ss_pred hHHHHHHHHHHHHHhhHhhhc------CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHH
Confidence 444444444434444444333 23467888888876643 3333333444444 45678999999999999999
Q ss_pred HHHHHHhhC
Q psy10626 148 VNKISFHAQ 156 (344)
Q Consensus 148 I~AIr~aaa 156 (344)
|.|.+.|+.
T Consensus 451 MAaCrLASK 459 (664)
T KOG3727|consen 451 MAACRLASK 459 (664)
T ss_pred HHHhhHhhc
Confidence 999998875
No 137
>KOG0705|consensus
Probab=55.17 E-value=8.1 Score=41.88 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=29.4
Q ss_pred eEEEEeCCCcEEEEECCCHHHHHHHHHHHHH
Q psy10626 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 123 VFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
+|.|+...|..+.|.|.+.+|.+.||+||..
T Consensus 447 ~F~IVs~tgqtWhFeAtt~EERdaWvQai~s 477 (749)
T KOG0705|consen 447 CFEIVSNTGQTWHFEATTYEERDAWVQAIQS 477 (749)
T ss_pred eEEEeccccchhhhhhcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999973
No 138
>KOG4236|consensus
Probab=53.00 E-value=20 Score=39.14 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=54.3
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccE-EEecC-----CCCCCc
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAG-----DYTKRK 121 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~-v~ia~-----dy~KRK 121 (344)
...+|||+..=.. . ..--++.|-.|...++.+|.++.... ...-|.|.... +.... .....+
T Consensus 412 t~~kEGWmvHyt~---~-----d~lRkrHYWrldsk~itlfqn~s~~r----yYkeIPLsEIl~v~~~~~~~~vp~~~~p 479 (888)
T KOG4236|consen 412 TKLKEGWMVHYTS---K-----DNLRKRHYWRLDSKCITLFQNESTNR----YYKEIPLSEILSVSSNNGFSLVPAGTNP 479 (888)
T ss_pred hhhhcceEEEEec---h-----hhhhhhhhheeccceeEeeecCCCce----eEEeecHHHhheeeccCCcccCCCCCCC
Confidence 4567888863211 1 11123444467888899998876532 12233333211 12111 124568
Q ss_pred ceEEEEeCCCcEEEEECCC------------HHHHHHHHHHHHHhh
Q psy10626 122 HVFRLYCTDGSEFLFLAPS------------ETLMEDWVNKISFHA 155 (344)
Q Consensus 122 nVFrL~tpdg~eyLFqAeS------------eeEM~eWI~AIr~aa 155 (344)
|+|+|+|.. ..+|-.++ .+..+.|-.+|+.|.
T Consensus 480 hcFEI~T~~--~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 480 HCFEIRTAT--TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred ceEEEEeee--EEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 999999986 44455555 556899999998664
No 139
>KOG0248|consensus
Probab=52.30 E-value=12 Score=41.33 Aligned_cols=75 Identities=7% Similarity=-0.150 Sum_probs=50.5
Q ss_pred cccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEec-ccEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHH
Q psy10626 69 AVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF-KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDW 147 (344)
Q Consensus 69 ~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~-ga~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eW 147 (344)
..|+|+.+|+++.++.+.+|+..-+. ..+.+-++ +|....-....+.+..|. + ..|.+-++...-+++|
T Consensus 271 v~k~gqi~~y~~~~~~~~~p~s~~d~-----~s~~~~~~~~~s~~fqli~~t~~~~~~--~---~s~~lt~dw~~iL~~~ 340 (936)
T KOG0248|consen 271 VFKNGQISFYRKHNNRDEEPASKIDI-----RSVTKLEQQGAAYAFQLITSTDKMNFM--T---ESERTTHDWVTILSAA 340 (936)
T ss_pred eeccceEEEEEcCCCccccccCcccc-----cccceeeccchhHHhhhhhhceeEEEe--c---cChhhhhhhHHHHHHH
Confidence 47999999999999999999877642 24455554 332222222233333332 2 3577889999999999
Q ss_pred HHHHHH
Q psy10626 148 VNKISF 153 (344)
Q Consensus 148 I~AIr~ 153 (344)
|++...
T Consensus 341 iKv~~~ 346 (936)
T KOG0248|consen 341 IKATTL 346 (936)
T ss_pred HHHHhc
Confidence 999863
No 140
>KOG3521|consensus
Probab=52.10 E-value=19 Score=39.71 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=58.7
Q ss_pred eEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEecCchhhcccC-CCccEEecccEEEecCCCCCCcceEEEE
Q psy10626 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA-ATSPIIIFKARCEKAGDYTKRKHVFRLY 127 (344)
Q Consensus 49 V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKDeke~a~~~a-~~~~IsL~ga~v~ia~dy~KRKnVFrL~ 127 (344)
...+|-|+.|. || ..=-..||.|=-+.|...|-....+...+ .-.++-+..-+|.... .+|.|-|+
T Consensus 427 LlleGdlrmKe-----gk----~sK~DVhcfLfTDllLVcK~v~k~~drlKVIRpPll~dklv~q~~~----dpnsf~lV 493 (846)
T KOG3521|consen 427 LLLEGDLRMKE-----GK----GSKADVHCFLFTDLLLVCKKVQKKADRLKVIRPPLLMDKLVCQYLR----DPNSFLLV 493 (846)
T ss_pred hhhccceeccc-----CC----CcccceeeeeehhHHHHhHHHhhhcccceeeccchhhcceeeeecC----CCCceEEE
Confidence 45788887664 11 12246788887777777765443221111 1123333344444433 36777777
Q ss_pred eC-----CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 128 CT-----DGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 128 tp-----dg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
.- -...|.|+|...++-..|+.+|..|..
T Consensus 494 hLtEFh~a~~ayt~hcs~p~d~~~W~D~l~~Aq~ 527 (846)
T KOG3521|consen 494 HLTEFHTAQAAYTMHCSGPEDTLRWTDMLKMAQD 527 (846)
T ss_pred eechhhhhhhhheeecCChhhHHHHHHHHHHHHH
Confidence 53 225799999999999999999997754
No 141
>KOG2710|consensus
Probab=51.77 E-value=4.2 Score=42.11 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCcchhhhhcccccccccCCCccccCCCcccc-cccccccccCC
Q psy10626 176 TGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEELP 218 (344)
Q Consensus 176 t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~~ 218 (344)
..|.++++|-.+..+.|+.-.|+||..|.-.. |.|+..|+.-|
T Consensus 93 ~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p 136 (412)
T KOG2710|consen 93 QIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPP 136 (412)
T ss_pred eCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCc
Confidence 44999999999999999999999999999888 99999999764
No 142
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.86 E-value=37 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=28.3
Q ss_pred CcceEEEEeCCC---cEEEEECCCHHHHHHHHHHHHH
Q psy10626 120 RKHVFRLYCTDG---SEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 120 RKnVFrL~tpdg---~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
...+|.|..... ....|-|+|.++.+.|+..|+.
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 346899887654 6799999999999999999863
No 143
>KOG4270|consensus
Probab=42.30 E-value=8.6 Score=41.48 Aligned_cols=145 Identities=11% Similarity=0.041 Sum_probs=71.8
Q ss_pred ccCCceEEEEEeCCeEeEEecCchhhcccCCCccEEecccEEEecCC-CCCCcceEEEEeCCC--cEEEEECC------C
Q psy10626 70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGD-YTKRKHVFRLYCTDG--SEFLFLAP------S 140 (344)
Q Consensus 70 ~RsWKkrwfVLrG~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ia~d-y~KRKnVFrL~tpdg--~eyLFqAe------S 140 (344)
.++|.++++.....++++|.+.+.... .+...+.++.++.... ...-+..+.+.+... ..|-|-+- -
T Consensus 50 ek~~~~r~~~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~ 125 (577)
T KOG4270|consen 50 EKNLQRRVSDMDSEQLRLFQAQKSSGE----EGLFRLPGAKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYLFL 125 (577)
T ss_pred HHHHHhhhhhcchhhhhhhhhhhhhhh----ccccccCcchhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhhhc
Confidence 588999999999999999988876543 3334444433332221 111222333222110 01111111 1
Q ss_pred HHHHHHHHHHHHHhhCCCC--------CCcccccccccccccCCCcchhhhhcccccccccCCCccccCCCcccc-cccc
Q psy10626 141 ETLMEDWVNKISFHAQLPP--------SLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNH 211 (344)
Q Consensus 141 eeEM~eWI~AIr~aaaL~~--------se~L~s~e~~~~~s~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~ 211 (344)
..-++.|...-+++..+.. +.|+ +|+....--+.-.+..++. ...-++|+.+|||||+.|.++. +.+.
T Consensus 126 ~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~-s~~~~~n~vp~i~~l~~~~--~l~~e~Gl~eEGlFRi~~~~sk~e~lr 202 (577)
T KOG4270|consen 126 GLPVEFQPDYHRRALSASETVFGVSTEAMQL-SYDPRGNFVPLILHLLQSG--RLLLEGGLKEEGLFRINGEASKVERLR 202 (577)
T ss_pred cchhhhccccccccccchhhhhcchHHhhhc-ccccCCCcchhhhHhhhhh--hhhhhcCccccceeccCCCchHHHHHH
Confidence 1223334333333322111 1111 2332211000111222232 4688899999999999999988 7777
Q ss_pred cccccCCCCC
Q psy10626 212 TSYEELPSPH 221 (344)
Q Consensus 212 ~~~~~~~~~~ 221 (344)
+.|+--..++
T Consensus 203 ~~ld~g~v~~ 212 (577)
T KOG4270|consen 203 EALDCGVVPD 212 (577)
T ss_pred HHHcCCcccc
Confidence 7776544433
No 144
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=39.92 E-value=1.8e+02 Score=26.54 Aligned_cols=82 Identities=9% Similarity=0.135 Sum_probs=52.3
Q ss_pred ceEEEEEeCCeEeEEecCchhhccc---------CCCcc------EEecccEEEec-CCCCCCcceEEEEeCC-------
Q psy10626 74 KSLYTVLCGQLLCFFKDQDDFVASK---------AATSP------IIIFKARCEKA-GDYTKRKHVFRLYCTD------- 130 (344)
Q Consensus 74 KkrwfVLrG~~L~fYKDeke~a~~~---------a~~~~------IsL~ga~v~ia-~dy~KRKnVFrL~tpd------- 130 (344)
...-||.++...++||+....+... ....+ |.+..-.+... .......++|+|++..
T Consensus 50 e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egRp 129 (160)
T cd01255 50 ELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGRP 129 (160)
T ss_pred eEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCCC
Confidence 4567899999999999876543321 01111 22222222211 1124467899998742
Q ss_pred CcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 131 GSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 131 g~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
.++|.|++.+.+.-++.++.|+...
T Consensus 130 E~vfqLCcS~~E~k~~flK~Irsil 154 (160)
T cd01255 130 EKVFVLCCSTAESRNAFLKTIRSIL 154 (160)
T ss_pred cceEEEecCCHHHHHHHHHHHHHHH
Confidence 2589999999999999999998654
No 145
>KOG1450|consensus
Probab=35.83 E-value=32 Score=37.69 Aligned_cols=107 Identities=22% Similarity=0.301 Sum_probs=75.2
Q ss_pred CeEEEEEEeeeeeeccCCccc---cccCCceEEEEEeCCeEeEEecCchhhccc--------CCCccEEecccEEEecCC
Q psy10626 48 PVEIQGVLERKHELQSGGKKA---AVRSWKSLYTVLCGQLLCFFKDQDDFVASK--------AATSPIIIFKARCEKAGD 116 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs---~~RsWKkrwfVLrG~~L~fYKDeke~a~~~--------a~~~~IsL~ga~v~ia~d 116 (344)
.+...|++.. .+.+..|+.. ....|..-|..+.|..++||.+........ .......+.+++......
T Consensus 246 ~~~~~~~~~~-~~~~~~g~~~~pl~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~ 324 (650)
T KOG1450|consen 246 EPEYAGYTEQ-TEILSPGRTARPLKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKN 324 (650)
T ss_pred chhhhhhhhh-hhhcccccccccCCCcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccc
Confidence 3556666653 2344444333 356699999999999999999876543221 011233455565555455
Q ss_pred CCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHhh
Q psy10626 117 YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 117 y~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
...+++++.+.+..+..|+++..++....+|..++....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~net~~~d~~~~~~~~~ 363 (650)
T KOG1450|consen 325 KSTRKNTLWLTTNRTSKVLNRSHNETSFEDWSSNLPEVI 363 (650)
T ss_pred cCCccceeeeeecCCceeeecCCCCccccchhhcchhhh
Confidence 677889999999999999999999999999998887544
No 146
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=35.56 E-value=12 Score=37.38 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCeEEEEEEeeeeeeccCCccccccCCceEEEEEeC
Q psy10626 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG 82 (344)
Q Consensus 47 ~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG 82 (344)
+.+.++|+|.+.. . +.++.+.++||+|||+|..
T Consensus 278 ~~~~~~~~~~~r~-~--~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 278 PILLKEGFMIKRA-Q--GRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred cchhhhhhHHHhc-c--cCCcccccchhheeeecCC
Confidence 5688999997432 1 2225567899999999863
No 147
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=35.18 E-value=19 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.4
Q ss_pred ccCCceEEEEEeCCeEeEEec
Q psy10626 70 VRSWKSLYTVLCGQLLCFFKD 90 (344)
Q Consensus 70 ~RsWKkrwfVLrG~~L~fYKD 90 (344)
.+.|.+.|+++.+..|-+||-
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 689999999999999999984
No 148
>KOG4406|consensus
Probab=33.91 E-value=17 Score=37.95 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=34.8
Q ss_pred CCCcchhhhhcccccccc-cCCCccccCCCcccc-ccccccccc
Q psy10626 175 YTGTTIQEKKKTSIFEEE-VGPGGYINSDGYSNL-RNNHTSYEE 216 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g-~~~~Gl~~~~g~~~~-~~~~~~~~~ 216 (344)
.+-|.++..|++.-+++| +.+||+||.|+.... +.+++.|.+
T Consensus 269 ~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~ 312 (467)
T KOG4406|consen 269 ESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNT 312 (467)
T ss_pred CCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcC
Confidence 455778899999999998 999999999987666 888877654
No 149
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=33.58 E-value=12 Score=37.13 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCeEEEEEEeeeeeeccCCc-cccccCCceEEEEEe
Q psy10626 46 LPPVEIQGVLERKHELQSGGK-KAAVRSWKSLYTVLC 81 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGK-Ks~~RsWKkrwfVLr 81 (344)
...+.|+|++.++. .|+ +...++||++||.|+
T Consensus 283 ~~~~~k~g~~~~~~----~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 283 EPVVLKEGFMIKRA----QGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred CchhhhhhhhHhhc----ccCCCccccchhheeeecC
Confidence 45688999986432 233 345789999999984
No 150
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=33.32 E-value=9.2 Score=38.26 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCeEEEEEEeeeeeeccCCccccccCCceEEEEEeC
Q psy10626 46 LPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG 82 (344)
Q Consensus 46 l~~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG 82 (344)
.+.+.|+|+|.+.. .+.++.+.++||++||.|..
T Consensus 280 ~~~~~~e~~~~~r~---~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 280 EPVHLKEGEMYKRA---QGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred CchhhHHHHHHhhc---cCCCccccccchhheeecCC
Confidence 45688999997432 12225567899999999863
No 151
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=32.88 E-value=1.2e+02 Score=24.61 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=27.6
Q ss_pred CCCCCcceEEEEeCCCcEEEEECCCHHHHHHHHHHH
Q psy10626 116 DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151 (344)
Q Consensus 116 dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AI 151 (344)
-|-=+...++|-..||+.|+|..++.++.++-+++|
T Consensus 70 Ryllr~~AlEiF~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 70 RYLLRDTALEIFFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EETTEEEEEEEEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred HhcCcceEEEEEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 455567788999999999999999999988766543
No 152
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=32.85 E-value=2.3e+02 Score=23.12 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=44.2
Q ss_pred ceEEEEEe----C-CeEeEEecCchhhcccCCCccEEecc-cEEEecCCCCCCcceEEEEeCCCcEEEEECCCHHHHHHH
Q psy10626 74 KSLYTVLC----G-QLLCFFKDQDDFVASKAATSPIIIFK-ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDW 147 (344)
Q Consensus 74 KkrwfVLr----G-~~L~fYKDeke~a~~~a~~~~IsL~g-a~v~ia~dy~KRKnVFrL~tpdg~eyLFqAeSeeEM~eW 147 (344)
+.+|.+|. + .++++|+-+........-...-+|.. ..|+.. +..+--.-|.|... ..|..+|.+.+|-..+
T Consensus 4 K~r~Lclsv~~~~~~~v~l~k~K~~~~g~f~i~ktW~L~eL~~I~~~-~~~~~~~~F~l~~~--k~y~W~a~s~~Ek~~F 80 (91)
T PF15277_consen 4 KPRYLCLSVTNSPRIQVRLHKVKQNDNGSFQIGKTWDLDELKAIDGI-NPDKDTPEFDLTFD--KPYYWEASSAKEKNTF 80 (91)
T ss_dssp EEEEEEEEEETTETTEEEEEEEEE-CCS-EEEEEEEEGGG--EEEE--SSS--TTEEEEESS--SEEEEEESSHHHHHHH
T ss_pred ccEEEEEEEecCCceEEEEEEEEecCCCcEEEeeEEehhhceeeeee-cCCCCCcCEEEEEC--CCcEEEeCCHHHHHHH
Confidence 56676664 3 34888876654211000001123332 123321 11223347888874 4999999999999999
Q ss_pred HHHHHHhh
Q psy10626 148 VNKISFHA 155 (344)
Q Consensus 148 I~AIr~aa 155 (344)
|..|...+
T Consensus 81 i~~L~k~~ 88 (91)
T PF15277_consen 81 IRSLWKLY 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997654
No 153
>PF15404 PH_4: Pleckstrin homology domain
Probab=32.29 E-value=46 Score=30.99 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=22.0
Q ss_pred CCcEEEEECCCHHHHHHHHHHHHH
Q psy10626 130 DGSEFLFLAPSETLMEDWVNKISF 153 (344)
Q Consensus 130 dg~eyLFqAeSeeEM~eWI~AIr~ 153 (344)
.|+.++|.|-|..|-+.||-+|..
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHh
Confidence 578999999999999999999973
No 154
>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=31.33 E-value=90 Score=25.00 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=28.7
Q ss_pred CCCcceEEEEeCCCcEEEEECCC-----HHHHHHHHHHHH
Q psy10626 118 TKRKHVFRLYCTDGSEFLFLAPS-----ETLMEDWVNKIS 152 (344)
Q Consensus 118 ~KRKnVFrL~tpdg~eyLFqAeS-----eeEM~eWI~AIr 152 (344)
...+-.++|+...|+.|+++..+ +.....||.-|.
T Consensus 23 ~~~~~~l~lk~~t~r~~yl~L~~~~~~~~~~F~~w~~lv~ 62 (77)
T PF12480_consen 23 DLEKQQLKLKLVTGRPFYLQLCAPADKPETLFGEWIRLVS 62 (77)
T ss_pred cCcccEEEEEEccCCEEEEEEeCcccCcchhHHHHHHHHH
Confidence 34456888999899999999666 678899999887
No 155
>KOG4095|consensus
Probab=29.86 E-value=23 Score=32.34 Aligned_cols=24 Identities=21% Similarity=0.370 Sum_probs=21.1
Q ss_pred cccCCceEEEEEeCCeEeEEecCc
Q psy10626 69 AVRSWKSLYTVLCGQLLCFFKDQD 92 (344)
Q Consensus 69 ~~RsWKkrwfVLrG~~L~fYKDek 92 (344)
++|.|.+.|+.+....|.+||--.
T Consensus 27 KVRrWEKKwVtvgDTslRIyKWVP 50 (165)
T KOG4095|consen 27 KVRRWEKKWVTVGDTSLRIYKWVP 50 (165)
T ss_pred HHHHHhhheEeecccceEEEEeee
Confidence 479999999999999999999543
No 156
>KOG0705|consensus
Probab=29.21 E-value=15 Score=39.99 Aligned_cols=58 Identities=22% Similarity=0.466 Sum_probs=36.0
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeC-CeEeEEecCchhhcccCCCccEEecccEEE
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG-QLLCFFKDQDDFVASKAATSPIIIFKARCE 112 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG-~~L~fYKDeke~a~~~a~~~~IsL~ga~v~ 112 (344)
...|+|.|.++. || ...+.||+.|++|+. +.|.||-.-.+.-.+. ...-|+|.-+++.
T Consensus 301 IPIKQg~LlKrS-----gk-~L~keWKKKYVtlcsnG~LtYh~sL~dYM~ni-HgKEiDL~~tTik 359 (749)
T KOG0705|consen 301 IPIKQGMLLKRS-----GK-SLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNI-HGKEIDLLRTTIK 359 (749)
T ss_pred cchhhhhHHHhc-----ch-HHHHHHhhhheeeccCcceeecccHHHHHHhc-ccceeeeeeeeee
Confidence 356899997543 22 234999999999994 7888887666554332 1223455444443
No 157
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=28.41 E-value=1.4e+02 Score=25.85 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCcceEEEEeCCCcEEEEECCCHHHHHHHHHHHHHh
Q psy10626 119 KRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFH 154 (344)
Q Consensus 119 KRKnVFrL~tpdg~eyLFqAeSeeEM~eWI~AIr~a 154 (344)
...+-|-|+|..| ..-|.++|..+-+.|++.|+.-
T Consensus 68 ~~~~yfgL~T~~G-~vEfec~~~~~~k~W~~gI~~m 102 (110)
T PF08458_consen 68 EERRYFGLKTAQG-VVEFECDSQREYKRWVQGIQHM 102 (110)
T ss_pred ceEEEEEEEecCc-EEEEEeCChhhHHHHHHHHHHH
Confidence 3557799999965 7899999999999999999743
No 158
>KOG1453|consensus
Probab=26.62 E-value=20 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcccc-cccccccccC
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEEL 217 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~~ 217 (344)
.+.|.+..+|..+|-.+|+.-+|++|..|.+|- ++|.+.|+.-
T Consensus 616 ~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~ 659 (918)
T KOG1453|consen 616 STVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENG 659 (918)
T ss_pred CCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCC
Confidence 588999999999999999999999999999998 9999999984
No 159
>KOG1264|consensus
Probab=25.23 E-value=70 Score=36.52 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.2
Q ss_pred CeEEEEEEeeeeeeccCCccccccCCceEEEEEeCCeEeEEec
Q psy10626 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKD 90 (344)
Q Consensus 48 ~V~KeGwL~RKq~lesgGKKs~~RsWKkrwfVLrG~~L~fYKD 90 (344)
-+.|+|.|+.|. ...+.|...||||....|+|-.+
T Consensus 474 nsvk~GiLy~kd--------~vdheWt~h~fvlt~~kl~ys~e 508 (1267)
T KOG1264|consen 474 NSVKQGILYMKD--------PVDHEWTRHYFVLTDAKLSYSDE 508 (1267)
T ss_pred hhhhcceEEEec--------CCCCceeeeEEEEecceeEeehh
Confidence 357999999886 35789999999999999988653
No 160
>KOG3520|consensus
Probab=25.19 E-value=69 Score=37.44 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred CccEEecccEEEecCCCCCCcceEEEEeC--CCcEEEEECCCHHHHHHHHHHHHHhhC
Q psy10626 101 TSPIIIFKARCEKAGDYTKRKHVFRLYCT--DGSEFLFLAPSETLMEDWVNKISFHAQ 156 (344)
Q Consensus 101 ~~~IsL~ga~v~ia~dy~KRKnVFrL~tp--dg~eyLFqAeSeeEM~eWI~AIr~aaa 156 (344)
...|+|..-++.-+. +.++-.|-|.+. +-..|-+.|.+.+|-+.||+.|+.+++
T Consensus 667 spVisL~~livRevA--td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~ 722 (1167)
T KOG3520|consen 667 SPVISLQKLIVREVA--TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVA 722 (1167)
T ss_pred CCceehHHHHHHHHh--ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence 346777654333211 233457777776 346899999999999999999998874
No 161
>KOG4271|consensus
Probab=24.10 E-value=24 Score=40.18 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=38.4
Q ss_pred cCCCcchhhhhcccccccccCCCccccCCCcccc-ccccccccc
Q psy10626 174 QYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNL-RNNHTSYEE 216 (344)
Q Consensus 174 ~~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~~~-~~~~~~~~~ 216 (344)
...-|...|||+.||.+-|+..+||+|.+|+-.- .+++..|.+
T Consensus 929 ~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n 972 (1100)
T KOG4271|consen 929 EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLN 972 (1100)
T ss_pred CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHh
Confidence 3556889999999999999999999999998766 889999998
No 162
>KOG4407|consensus
Probab=22.17 E-value=32 Score=40.80 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=28.0
Q ss_pred CCCcchhhhhcccccccccCCCccccCCCcc
Q psy10626 175 YTGTTIQEKKKTSIFEEEVGPGGYINSDGYS 205 (344)
Q Consensus 175 ~t~p~~~ek~~d~~~e~g~~~~Gl~~~~g~~ 205 (344)
.-+|.|||-|++.+-+.||+--||||+||-.
T Consensus 1172 ~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~ 1202 (1973)
T KOG4407|consen 1172 DYVPMIVQACVCVVETYGLDTVGIYRIPGNT 1202 (1973)
T ss_pred ccchHHHHHHHHHHhhcCccceeEEecCCcH
Confidence 4469999999999999999999999999964
No 163
>KOG3551|consensus
Probab=20.77 E-value=1.1e+02 Score=32.24 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=36.9
Q ss_pred cEEecccEEEecCCC-CCCcceEEEEeCCCc-EEEEECCCHHHHHHHHHHHHHhh
Q psy10626 103 PIIIFKARCEKAGDY-TKRKHVFRLYCTDGS-EFLFLAPSETLMEDWVNKISFHA 155 (344)
Q Consensus 103 ~IsL~ga~v~ia~dy-~KRKnVFrL~tpdg~-eyLFqAeSeeEM~eWI~AIr~aa 155 (344)
.|.|.-|.+.....+ +.-..+|+|..+||. +.++-|.|..+...|..||+.+.
T Consensus 217 ~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v 271 (506)
T KOG3551|consen 217 TIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANV 271 (506)
T ss_pred ccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHH
Confidence 355554443332222 233448999999985 67888999999999999998654
Done!