RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10626
(344 letters)
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 132 bits (333), Expect = 2e-38
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA--ATSPI 104
+++G+L RK E+++ GKKAA RSW+++Y VL L F+KD A P+
Sbjct: 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65
Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
+ +A+ A DY KRKHVF+L DG E+LF A E M W+ ++ PS
Sbjct: 66 SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 130 bits (327), Expect = 1e-37
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS---- 102
+G + RKHE S KKA+ RSW +Y + F+KDQ + ++ T
Sbjct: 6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65
Query: 103 PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
+ A E A DYTK+KHV R+ +G+ FL A +T M WV + +
Sbjct: 66 SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 118 bits (298), Expect = 2e-33
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA--ATSPIIIFK 108
++G L RKHE ++ KKA+ RSW ++Y V+ Q + F+KD + + P+ + +
Sbjct: 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60
Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
A CE A DY K+KHVF+L +DG+E+LF A + M W+ IS
Sbjct: 61 AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 118 bits (296), Expect = 6e-33
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKA----- 99
+ ++ GVL R GK+ + W + +TVL G +L FFKD A
Sbjct: 4 RTKTLDKAGVLHRTKTAD-KGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSK 62
Query: 100 ---ATSPIIIFKARCEKA-GDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
+ + A A D + RK+V L DGSE+L SE ++ W I+
Sbjct: 63 FSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 114 bits (286), Expect = 2e-31
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASK-------A 99
VE G+L Q G + ++W + VL G L F+++ S
Sbjct: 10 HEVEKSGLLNMTKIAQGG--RKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSR 67
Query: 100 ATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
S + + A + R++V + G EFL + ET + W +
Sbjct: 68 PESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALR 120
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 105 bits (263), Expect = 9e-28
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 49 VEIQGVLERKHELQSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
+G L + + GK+ ++R WK +Y VL G L +KD+ + PI +
Sbjct: 3 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 62
Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
+ + TKRK+VFRL T E LF A M W+ I + L
Sbjct: 63 NACLIDISYSETKRKNVFRL-TTSDCECLFQAEDRDDMLAWIKTIQESSNLNEE 115
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 96.6 bits (240), Expect = 9e-25
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 50 EIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQD----DFVASKAATSPII 105
++G L RK L+ G +K A+ SW + VL G L ++ + D K+ +
Sbjct: 2 TMEGPLRRKTLLKEG-RKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60
Query: 106 IFKARCEKAGDYTKRKHVFRLYCTD-GSEFLFLAPSETLMEDWVNKISFHAQL---PPSL 161
+ D + +F+L D G+ + F S W + +
Sbjct: 61 SIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQVPA 120
Query: 162 QLLSYD 167
L+S++
Sbjct: 121 NLMSFE 126
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 95.8 bits (237), Expect = 4e-23
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 6/132 (4%)
Query: 45 QLPPVEIQGVLERKHELQSGGKK----AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAA 100
+ V G L K + ++ A R WK + L G L F++ + +
Sbjct: 7 EQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNS 66
Query: 101 T--SPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLP 158
+ + + ++ K++HVF L + G +LF A S+T +E+WV I
Sbjct: 67 APRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL 126
Query: 159 PSLQLLSYDDSQ 170
+ + D +
Sbjct: 127 FAKKHGKEDTVR 138
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 88.1 bits (217), Expect = 3e-20
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 47 PPVEIQGVLERKHEL--QSGGKK--AAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATS 102
V G L K+ L + K A R WK + L G L F++ +
Sbjct: 9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVP 68
Query: 103 --PIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
+ + + + ++ K+ VF L + G FLF S+T +E+W+ I +
Sbjct: 69 KHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVA 128
Query: 161 LQ 162
Sbjct: 129 RH 130
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 70.1 bits (172), Expect = 3e-15
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
+ G L R K + + WK L+ V+ ++L + +D AA +
Sbjct: 6 SGSTMSGYLYRS--------KGSKKPWKHLWFVIKNKVLYTYAASED----VAALESQPL 53
Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
D VF+L ++F A + W++
Sbjct: 54 LGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQ 99
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 69.4 bits (170), Expect = 5e-15
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
+G+L K +G WK+ + VL +L + D+ D + + +C
Sbjct: 3 EGMLHYK----AGTSYLGKEHWKTCFVVLSNGILYQYPDRTD----VIPLLSVNMGGEQC 54
Query: 112 EKAG--DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP 159
+ T R H F++ +D A SE M +W+ +
Sbjct: 55 GGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGV 104
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 62.2 bits (150), Expect = 4e-12
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 7/115 (6%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLC------GQLLCFFKDQDDFVASKAATSPII 105
+G L + W+ +L L FF K +
Sbjct: 21 EGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKA-SRPKVSIPLSA 79
Query: 106 IFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
I + R + ++ + F L +G+E++ WV I PS
Sbjct: 80 IIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSGPS 134
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 60.9 bits (148), Expect = 7e-12
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
PV G L ++ + V+ W + VL + L ++KD+ + S + P++
Sbjct: 9 APVTKAGWLFKQ-------ASSGVKQWNKRWFVLVDRCLFYYKDEKE--ESILGSIPLLS 59
Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF--HAQLPPS 160
F+ + D RKH F+ + F A S E W+ + Q PS
Sbjct: 60 FRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPS 115
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 60.7 bits (147), Expect = 2e-11
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
LP V G LE++ W+ + L + ++ D K
Sbjct: 12 QDLPFVIKAGYLEKR----RKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGE 63
Query: 104 IIIFKARCEKAG---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
I K+ F + D + F A S E+WV ++ F Q S
Sbjct: 64 FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS 123
Query: 161 LQLLSYDDSQK 171
+ D+ +
Sbjct: 124 DVIPEDDEERG 134
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 59.8 bits (145), Expect = 2e-11
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
PV G L ++ + V+ W + VL + L ++KD+ + S + P++ F
Sbjct: 21 PVTKAGWLFKQ-------ASSGVKQWNKRWFVLVDRCLFYYKDEKE--ESILGSIPLLSF 71
Query: 108 KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
+ + D RKH F+ + F A S E W+ + A++
Sbjct: 72 RVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 58.3 bits (141), Expect = 4e-11
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
WKS + + L F++D++ SK A P+ + + FR
Sbjct: 15 NVLVNSQWKSRWCSVRDNHLHFYQDRNR---SKVAQQPLSLVGCEVVPDPS-PDHLYSFR 70
Query: 126 LYCTDGSEFLFLAPSETLMEDWVNKI 151
+ A S M W+ +
Sbjct: 71 ILHKGEELAKLEAKSSEEMGHWLGLL 96
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 58.2 bits (141), Expect = 5e-11
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
V QG LE+K S W+ + V+ L ++ ++ K +I
Sbjct: 3 VIKQGYLEKK----SKDHSFFGSEWQKRWCVVSRGLFYYYANEKS----KQPKGTFLIKG 54
Query: 109 ARCEKAG---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
A +K++ F L D + F A S DWV++ISF
Sbjct: 55 YSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISF 102
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 58.3 bits (141), Expect = 6e-11
Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 24 SFTTRRRTQSFRKLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ 83
S ++ +R+ S ++ + PV +G L ++ ++ WK + VL
Sbjct: 3 SGSSGKRSNSIKR-------NPNAPVVRRGWLYKQ-----DST--GMKLWKKRWFVLSDL 48
Query: 84 LLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETL 143
L +++D+ + + + F+ + D+ RK+ F+ + + F +
Sbjct: 49 CLFYYRDEKE--EGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKE 106
Query: 144 MEDWVNKISFHAQLPPS 160
ME W+ + A + S
Sbjct: 107 MELWMKAMLDAALVQTS 123
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 57.8 bits (140), Expect = 7e-11
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
P +G L +K G +WK ++ VL + F+K + D + +
Sbjct: 3 PKRIREGYLVKK-----GSV---FNTWKPMWVVLLEDGIEFYKKKSD---NSPKGMIPLK 51
Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLS 165
D+ KR VF++ T + F A + WV I+ + L+
Sbjct: 52 GSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIEGLEHHH 110
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 54.4 bits (130), Expect = 2e-09
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 14/122 (11%)
Query: 45 QLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI 104
P+ +G L K ++ R ++ +T L G L F+ D+ + +
Sbjct: 14 TALPLYFEGFLLIK--------RSGYREYEHYWTELRGTTLFFYTDKKSIIYVDK----L 61
Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA--QLPPSLQ 162
I C + T++ E + E+W I +P ++
Sbjct: 62 DIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVS 121
Query: 163 LL 164
LL
Sbjct: 122 LL 123
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 55.1 bits (132), Expect = 4e-09
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
LP V G LE++ W+ + L + ++ D K
Sbjct: 101 QDLPFVIKAGYLEKR----RKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGE 152
Query: 104 IIIFKARCEKAG---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
I K+ F + D + F A S E+WV ++ F Q
Sbjct: 153 FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 208
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 52.5 bits (126), Expect = 7e-09
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
PV I+G L ++ +R WK + VL G L ++KD + S + + +
Sbjct: 10 PVHIRGWLHKQ-----DSS--GLRLWKRRWFVLSGHCLFYYKDSRE--ESVLGSVLLPSY 60
Query: 108 KARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
R + G R+ F ++ A + + W+ +
Sbjct: 61 NIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALG 105
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 52.7 bits (126), Expect = 9e-09
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 17/135 (12%)
Query: 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC------GQLLCFFKDQDDFVAS 97
Q + G L + + + +RS+K + L L + ++
Sbjct: 13 SQKGGITKHGWLYKGNM--NSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---- 66
Query: 98 KAATSP--IIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHA 155
P I + + R+ F L D S +L A SE ME+W+ ++
Sbjct: 67 ---KEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123
Query: 156 QLPPSLQLLSYDDSQ 170
QL + +
Sbjct: 124 QLNFEAAMQEKRNGD 138
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 48.9 bits (117), Expect = 9e-08
Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 70 VRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPI--------IIFKARCEKAGDYTK 119
++WK +L L ++ P+ ++ G ++
Sbjct: 20 RKNWKVRKFILREDPAYLHYYDPAGA-------EDPLGAIHLRGCVVTSVESNSNGRKSE 72
Query: 120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
+++F + D + A + +W+ I ++
Sbjct: 73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 109
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 47.8 bits (114), Expect = 2e-07
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII 106
V QG + +K G + ++W + VL ++ ++ +D ++
Sbjct: 6 SGVLKQGYMMKK-----GHR---RKNWTERWFVLKPNIISYYVSEDL---KDKKGDILLD 54
Query: 107 FKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQL 157
E D +K +F + F A + ++W+ I L
Sbjct: 55 ENCCVESLPDKDGKKCLFLV-KCFDKTFEISASDKKKKQEWIQAIHSTIHL 104
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 47.8 bits (114), Expect = 3e-07
Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 25/124 (20%)
Query: 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCG--QLLCFFKDQDDFVASKAAT 101
+ + QG L ++ G + ++WK +L L ++
Sbjct: 13 EFRGVIIKQGCLLKQ-----GHR---RKNWKVRKFILREDPAYLHYYDPAGA-------E 57
Query: 102 SPI--------IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISF 153
P+ ++ G ++ +++F + D + A + +W+ I
Sbjct: 58 DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQM 117
Query: 154 HAQL 157
++
Sbjct: 118 ASRT 121
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 49.2 bits (117), Expect = 5e-07
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 64 GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIFKARCEKAGDYTKRKH 122
G + R+WK + VL L +F++ + + ++ D T +++
Sbjct: 70 GSSTLSRRNWKKRWFVLRQSKLMYFENDSE-------EKLKGTVEVRSAKEIIDNTNKEN 122
Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQE 182
+ D + F +A S W + +S ++ D Q Q T+
Sbjct: 123 GIDIIMADRT-FHLIAESPEDASQWFSVLSQVHSSTDQ-EIREMHDEQANPQNAVGTLDV 180
Query: 183 KKKTSI 188
S+
Sbjct: 181 GLIDSV 186
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 46.5 bits (110), Expect = 6e-07
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 66 KKAAVRSWKSLYTVLC---GQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKH 122
+ +W ++ + Q+L D T P+ K + H
Sbjct: 16 LSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRL--PRTIPLPSCKLSVPDPEERLDSGH 73
Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
V++L + A S L + W+ +S A PS
Sbjct: 74 VWKLQ-WAKQSWYLSASSAELQQQWLETLSTAAHSGPS 110
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 46.2 bits (110), Expect = 1e-06
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIFKARCE--KAGDYTKRKHVFRL 126
V++WK+ + L L +FKDQ PI I+ C + +R + F L
Sbjct: 31 VKTWKTRWFTLHRNELKYFKDQMS-------PEPIRILDLTECSAVQFDYSQERVNCFCL 83
Query: 127 YCTDGSEFLFLAPSETLMEDWVNKI 151
+ F A + ++W+ +
Sbjct: 84 VFPFRT-FYLCAKTGVEADEWIKIL 107
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 45.7 bits (108), Expect = 2e-06
Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 39 KLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVL---CGQLLCFFKDQDDFV 95
L ++ V QG L ++ G K ++WK VL L + +++
Sbjct: 8 SLSTVELSGTVVKQGYLAKQ-----GHK---RKNWKVRRFVLRKDPAFLHYYDPSKEENR 59
Query: 96 ASK----AATSPIIIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
+ + + ++F++ D + + A S+ +W+ I
Sbjct: 60 PVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 119
Query: 152 SFHAQLPPS 160
P S
Sbjct: 120 KKLTSGPSS 128
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 45.0 bits (106), Expect = 2e-06
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 29/125 (23%)
Query: 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
D G LER+ + ++S+ Y VL L FK D K P
Sbjct: 1 DHPFTEIKSGFLERRSKF--------LKSYSKGYYVLTPNFLHEFKTADR----KKDLVP 48
Query: 104 IIIF-----------KARCEKAGDYTKRKHVFRLYCTD------GSEFLFLAPSETLMED 146
++ + + + T F L+ G ++F A S M
Sbjct: 49 VMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMS 108
Query: 147 WVNKI 151
W + +
Sbjct: 109 WFDNL 113
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 44.1 bits (104), Expect = 5e-06
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 70 VRSWKSLYTVLCGQ-LLCFFKDQDD------FVASKAATSPIIIFKARCEKAGDYTKRKH 122
++ WK + L L ++ DQ + + R + D +
Sbjct: 18 LKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDC 77
Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
+ ++ C DG A S W +
Sbjct: 78 MLQIVCRDGKTISLCAESTDDCLAWKFTLQ 107
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 43.9 bits (104), Expect = 6e-06
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-IIF----KARCEKAGDYTKRKHVF 124
V++W+ Y VL Q L ++KD++D T P ++ + K VF
Sbjct: 21 VKNWQQRYFVLRAQQLYYYKDEED-------TKPQGCMYLPGCTIKEIATNPEEAGKFVF 73
Query: 125 RLYCTDGSE-------FLFLAPSETLMEDWVNKISFHAQLPPS 160
+ + ++ +A S+ ME+WV + A PS
Sbjct: 74 EIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 44.3 bits (104), Expect = 6e-06
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 30/128 (23%)
Query: 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIF 107
VE +G L + +W + VL G + ++ DD K I +
Sbjct: 4 SVEERGFL---TIFEDVSG---FGAWHRRWCVLSGNCISYWTYPDD-EKRKNPIGRINLA 56
Query: 108 KARCEKAG----DYTKRKHVFRLYCTDGSE-------------------FLFLAPSETLM 144
+ ++ R++ F L A ++
Sbjct: 57 NCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEER 116
Query: 145 EDWVNKIS 152
+ W+ K++
Sbjct: 117 DLWMQKLN 124
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 42.5 bits (100), Expect = 1e-05
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR 110
++GVL + + W+ + VL +L ++ QDD K + I +
Sbjct: 1 MEGVLYKWTNY--------LTGWQPRWFVLDNGILSYYDSQDDV--CKGSKGSIKMAVCE 50
Query: 111 CEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
+ ++ L F A + + W+ +
Sbjct: 51 IKV---HSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKA 93
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
Query: 65 GKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVF 124
+K ++ ++ + V L ++K QD+ A + + + + +K
Sbjct: 20 PRKLTLKGYRQHWVVFKETTLSYYKSQDE--APGDPIQQLNLKGCEVVPDVNVSGQKFCI 77
Query: 125 RLY---CTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
+L SE E W+ ++
Sbjct: 78 KLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASK 112
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 43.0 bits (101), Expect = 1e-05
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 70 VRSWKSLYTVLC-GQLLCFFKDQDDFVASKAATSPI-IIFKARCEKAGDYTKRKHVFRLY 127
+++W+ Y +L +K++ +P+ A+C+ R + F +
Sbjct: 21 IKTWRPRYFLLKNDGTFIGYKERPQ--DVDQREAPLNNFSVAQCQLMKTERPRPNTFIIR 78
Query: 128 C---TDGSEFLFLAPSETLMEDWVNKIS 152
C T E F + E+W I
Sbjct: 79 CLQWTTVIERTFHVETPEEREEWTTAIQ 106
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 42.8 bits (101), Expect = 1e-05
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSPI- 104
++ G L + G K +R WKS + + L + + D +P+
Sbjct: 7 GKKLCGYLSKF------GGKGPIRGWKSRWFFYDERKCQLYYSRTAQD-------ANPLD 53
Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
I + + +F + T A ++ M W+ ++
Sbjct: 54 SIDLSSAVFDCKADAEEGIFEIK-TPSRVITLKAATKQAMLYWLQQLQ 100
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 42.1 bits (99), Expect = 3e-05
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 44 DQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSP 103
Q V G ++ G +++WK Y L + +FK + + P
Sbjct: 9 PQDSAVIKAGYCVKQ-----GAV---MKNWKRRYFQLDENTIGYFKSELE-------KEP 53
Query: 104 I-IIFKARCE-----KAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
+ +I K D R ++F + T + F A S M W+ +S
Sbjct: 54 LRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRT-FYVQADSPEEMHSWIKAVS 107
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 41.9 bits (98), Expect = 4e-05
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 51 IQGVLERKHELQSGGKKAAVRSWKSLYTVL---CGQLLCFFKDQDDFVASKAATSPIIIF 107
I G L+ + + + Y +L LL + + + A + +
Sbjct: 17 ICGFLDIE---DNENSG----KFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQL- 68
Query: 108 KARCEKAGDYTKRKHVFRLYC----TDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
K T ++ +C + A + ++DWV ++ ++ PS
Sbjct: 69 -TYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPS 124
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 41.2 bits (96), Expect = 7e-05
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 28/118 (23%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
+ ++SW L+ VL +L +K Q + ++ A K F+
Sbjct: 16 IRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVG-----TVLLNACEIIERPSKKDGFCFK 70
Query: 126 LYCTDGSE-----------------------FLFLAPSETLMEDWVNKISFHAQLPPS 160
L+ + A SE+ W++ + + PS
Sbjct: 71 LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 40.6 bits (95), Expect = 9e-05
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 67 KAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRL 126
+ W+ + +L + + + + + + + K F L
Sbjct: 21 DGIRKVWQRRKCSVKNGILTISHATSN-----RQPAKLNLLTCQVKPNAE---DKKSFDL 72
Query: 127 YCTDGSEFLFLAPSETLMEDWVNKIS 152
+ + F A E W++ ++
Sbjct: 73 I-SHNRTYHFQAEDEQDYVAWISVLT 97
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 40.5 bits (95), Expect = 1e-04
Identities = 13/114 (11%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPI-I 105
G L++ + R ++ + G + ++ ++ + I
Sbjct: 6 SGKVKSGWLDKL-----SPQG--KRMFQKRWVKFDGLSISYYNNEKE-------MYSKGI 51
Query: 106 IFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPP 159
I + + + F + T + F+F E DW++ + +
Sbjct: 52 IPLSAISTV--RVQGDNKFEVVTTQRT-FVFRVEKEEERNDWISILLNALKSQS 102
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 40.4 bits (94), Expect = 1e-04
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 63 SGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIII------FKARCEKAGD 116
+ KK W Y ++ + + F+ + D K ++P ++ F R D
Sbjct: 13 NNTKK---FGWVKKYVIVSSKKILFYDSEQD----KEQSNPYMVLDIDKLFHVRPVTQTD 65
Query: 117 --YTKRKH---VFRL-----YCTDGSEFLFLAPSETLMEDWVNKIS 152
K +F++ + L LA S + WV+++
Sbjct: 66 VYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 49 VEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFK 108
VE GVL + + W+ + VL L ++K +D+
Sbjct: 1 VERCGVLSKWTNY--------IHGWQDRWVVLKNNALSYYKSEDE-----TEYGCRGSIC 47
Query: 109 ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
+ + F + + S + A + W++ I
Sbjct: 48 LSKAVITPHDFDECRFDIS-VNDSVWYLRAQDPDHRQQWIDAI 89
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 17/159 (10%)
Query: 4 DLKRAESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQ-LDQLPPVEIQ---GVLERKH 59
+ K L++ R S + + + +K+ ++++ +D +I +
Sbjct: 192 KICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEG 251
Query: 60 ELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAG---- 115
L G K + L L+ K A++ K +
Sbjct: 252 TLTRVGAK------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIN 305
Query: 116 ---DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
D + KH F + D + +F A S +W+ +
Sbjct: 306 DKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAAL 344
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 40.0 bits (93), Expect = 2e-04
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 26/115 (22%)
Query: 70 VRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCT 129
V++WK + +L L +F+ D II + + ++ + F LY
Sbjct: 18 VKTWKRRWFILTDNCLYYFEYTTDKEPRG-----IIPLENLSIREVLDPRKPNCFELYNP 72
Query: 130 DGSE---------------------FLFLAPSETLMEDWVNKISFHAQLPPSLQL 163
+ APS E+W+ I P +
Sbjct: 73 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDM 127
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 40.0 bits (93), Expect = 2e-04
Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 8/108 (7%)
Query: 70 VRSWKSLYTVLCGQ-LLCFFKDQDDFVASKAATSPIIIFKARCEKA------GDYTKRKH 122
+R WK + L L ++ D+ + + + + R
Sbjct: 21 LRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDG 80
Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKI-SFHAQLPPSLQLLSYDDS 169
+ + +GS A + W + ++ P+ + S
Sbjct: 81 LLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPSGPS 128
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 4e-04
Identities = 38/234 (16%), Positives = 62/234 (26%), Gaps = 91/234 (38%)
Query: 40 LEQLDQ---------LPPVE----IQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLC 86
+ QL P E ++G L + A SW+S +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-------- 294
Query: 87 FFKDQDDFVASKAATSPIIIFK--ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLM 144
KA T ++F RC +A + + +++
Sbjct: 295 --------SVRKAIT---VLFFIGVRCYEA-------------------YPNTSLPPSIL 324
Query: 145 EDWVNKISFHAQLPPSLQL----LSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYIN 200
ED + + + PS L L+ + Q T + + K+ I +N
Sbjct: 325 EDSLE----NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--------SLVN 372
Query: 201 SD------GY--------SNLRNNHTSYEELPS--PHSEPPP------LPQTAP 232
G LR S P SE LP +P
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 38.5 bits (89), Expect = 0.003
Identities = 36/240 (15%), Positives = 68/240 (28%), Gaps = 61/240 (25%)
Query: 129 TDGS-EFLFLAPSETLMEDWVN----KISFHAQLPPSLQLLSYDDSQK-----VSQYTG- 177
+ GS E + L P+ + + + F+ LP + + DD V ++ G
Sbjct: 12 SHGSLEHVLLVPTAS----FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 178 -TTIQEKKKTSIFEEEVGPG-GYINSDGYSNLRNN--HTSYEELPSPHSEPPPLPQTAPP 233
+++ E K F++ + + Y L N H +L + T
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENC-Y--LEGNDIHALAAKLLQEN------DTTLVK 118
Query: 234 QKHISPN--------NTPQRNPWPSDMN---SYGHGTIY-----Q-NIGPP----QHI-- 270
K + N P S + G+ + Q N + +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 271 --GPPPTSLNNRQSVNNSKSSTLPPYVNPPYVK--------ENSTRRPSESSSESEPTSV 320
L + S+ + + EN + P + S P S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Score = 35.4 bits (81), Expect = 0.030
Identities = 60/380 (15%), Positives = 113/380 (29%), Gaps = 127/380 (33%)
Query: 67 KAAVRSWKSLYTVLCGQ--LLCFFKD-QDDFVASKAATSPIIIFKARCEKAGDYTKRKHV 123
+A L + GQ +F++ +D + +I F A E + +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLD 204
Query: 124 FRLYCTDGSEFL-FLA-PSETLMEDWVNK--ISFHAQLPPS--LQLLSYDDSQKVSQYT- 176
T G L +L PS T +D++ IS P +QL Y + K+ +T
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYVVTAKLLGFTP 260
Query: 177 GTTIQEKKKTSIFEEEVGPGGYI-NSDGYSNLRNN---------------HTSYEELPSP 220
G K + + + I +D + + + + +Y P
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-----P 315
Query: 221 HSEPPPLPQTAPPQKHISPNNTPQRNPWPSDM------------------NSY--GHGTI 260
++ PP + + + N PS M NS+ +
Sbjct: 316 NTSLPP----SILEDSLENNEGV-----PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 261 Y---QNIGPPQHI--GPP---------------PTSLNNRQS-VNNSK------SSTLP- 292
N G + GPP P+ L+ QS + S+ + LP
Sbjct: 367 EISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--QSRIPFSERKLKFSNRFLPV 423
Query: 293 --PYVNPPYVKENSTRRPSESSSESEPTSVQR-----------KDKR---PNVLSSLFR- 335
P+ + + S + + + + D R ++ +
Sbjct: 424 ASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 336 ------------KKKATHLI 343
+ KATH++
Sbjct: 483 IIRLPVKWETTTQFKATHIL 502
Score = 29.6 bits (66), Expect = 2.1
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 111 CEKAGD-YTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQLLSY 166
E D K + +F+ + + F + L + F Q P+L L+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----SATQF-TQ--PALTLMEK 1741
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 39.3 bits (91), Expect = 5e-04
Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 48 PVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAA---TSPI 104
++ +L ++ + KK + ++K VL +L +++ + + K +
Sbjct: 14 NTILEEILIKRSQ---QKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIK 70
Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
+ + + + K+ F++ D + APS + WV K+ + +
Sbjct: 71 CVEIVKNDDGVIPCQNKYPFQV-VHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 40.4 bits (93), Expect = 5e-04
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 71 RSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTD 130
+W + G L D A + A D R++ F++ D
Sbjct: 295 STWDRQFYFTQGGNLMSQARGDV------AGGLAMDIDNCSVMAVDCEDRRYCFQITSFD 348
Query: 131 GSE-FLFLAPSETLMEDWVNKI 151
G + + A S+ E+W+ I
Sbjct: 349 GKKSSILQAESKKDHEEWICTI 370
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 38.3 bits (88), Expect = 7e-04
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 21/117 (17%)
Query: 65 GKKAAVRSWKSLYTVLCGQ-LLCFFKDQDDF-----------------VASKAATSPIII 106
+ + WK Y L L + +D+ V K I
Sbjct: 14 SGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISA 73
Query: 107 FKARCEKAGDY-TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPSLQ 162
F + + F + + G + F A S + WV I +Q+ SLQ
Sbjct: 74 FGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE--SQILASLQ 128
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 37.0 bits (86), Expect = 0.002
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 70 VRSWKSLYTVLCGQ--LLCFFKDQDDFVASKAATSP--IIIFKARCE--------KAGDY 117
++ WK+ + VL L ++ + D T +I A
Sbjct: 21 MKPWKARWFVLDKTKHQLRYYDHRMD-------TECKGVIDLAEVEAVAPGTPTIGAPKT 73
Query: 118 TKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
K F + T + F A + WV++I PS
Sbjct: 74 VDEKAFFDVK-TTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 38.1 bits (88), Expect = 0.003
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 26/121 (21%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
V++WK + +L L +F+ D II + + + ++ + F
Sbjct: 222 LGGRVKTWKRRWFILTDNCLYYFEYTTD-----KEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 126 LYCTDG---------------------SEFLFLAPSETLMEDWVNKISFHAQLPPSLQLL 164
LY + APS E+W+ I P +L
Sbjct: 277 LYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDML 336
Query: 165 S 165
+
Sbjct: 337 A 337
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.005
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 32 QSFRKLQ---KLEQLDQLPPVEIQGVLE 56
Q+ +KLQ KL D P + I+ +E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 36.0 bits (82), Expect = 0.009
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 17/127 (13%)
Query: 55 LERKHELQSGGKKAAVRSWKSLYTVL-------CGQLLCFFKDQDDFVASKAATSPIIIF 107
+ ++ K + WKS + VL L+ +KD+ + S + +
Sbjct: 5 MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLE 64
Query: 108 K-ARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS--------FHAQLP 158
E A Y H + C + + S M W +I FH +
Sbjct: 65 DICGLEPALPYEGLAHTLAIICLSQA-VMLGFDSHEAMCAWDTRIRYALGEVHRFHVTVA 123
Query: 159 PSLQLLS 165
P +L S
Sbjct: 124 PGTKLES 130
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 34.1 bits (78), Expect = 0.015
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 47 PPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLC--GQLLCFFKDQDDFVASKAATSPI 104
+ G L + V W+ + VL LL +F ++ P
Sbjct: 6 SGENVYGYLMKY------TNL--VTGWQYRFFVLNNEAGLLEYFVNEQSR-----NQKPR 52
Query: 105 IIFKARCEKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQ 156
+ + H F + G ++ A + WV+++ Q
Sbjct: 53 GTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQ 104
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 35.8 bits (82), Expect = 0.017
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 67 KAAVRSWKSLYTVLCGQLLCFFKDQDD-------FVASKAATSPIIIFKARCEKAGDYTK 119
++ + + + L +FKD D F+ SK + ++ +
Sbjct: 280 PKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHH--- 336
Query: 120 RKHVFRLYCTDGSEFLFLAPSETLMEDWVNKI 151
H + T +FLF +E+ +WV
Sbjct: 337 WPHGITIV-TPDRKFLFACETESDQREWVAAF 367
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 35.6 bits (81), Expect = 0.017
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 71 RSWKSLYTVL-------CGQLLCFFKDQDDFVASKAATSPIIIFKARCE-KAGDYTKRKH 122
+S + VL L +++++ + +A I ++ +K KH
Sbjct: 20 KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKH 79
Query: 123 VFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
+ LY D F A SE + W +
Sbjct: 80 LVALYTRDEH-FAIAADSEAEQDSWYQALL 108
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 33.9 bits (77), Expect = 0.024
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 72 SWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFRLYCTDG 131
K + VL + L ++KD ++ K + K R + + KH+F L+ T+
Sbjct: 29 GSKEYWFVLTAENLSWYKDDEE--KEKKYMLSVDNLKLR-DVEKGFMSSKHIFALFNTEQ 85
Query: 132 -------SEFLFLAPSETLMEDWVNKI 151
+ ++ ++ W
Sbjct: 86 RNVYKDYRQLELACETQEEVDSWKASF 112
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 33.8 bits (76), Expect = 0.037
Identities = 17/137 (12%), Positives = 48/137 (35%), Gaps = 30/137 (21%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARC 111
+ + ++ + KK + ++K +L L +++ + + I + K C
Sbjct: 6 ESIFLKRSQ---QKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITC 62
Query: 112 --------------------------EKAGDYTKRKHVFRLYCTDGSEFLFLAPSETLME 145
E+ + + F++ +G ++F +P+E L +
Sbjct: 63 VETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVF-SPTEELRK 121
Query: 146 DWVNKISFHAQLPPSLQ 162
W++++ + L
Sbjct: 122 RWIHQLKNVIRYNSDLV 138
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 32.8 bits (74), Expect = 0.083
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 64 GGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKAR-CEKAGDY--TKR 120
KK ++ +K + + +K +++ ++ +P R CE D + +
Sbjct: 57 KPKKLTLKGYKQYWCTFKDTSISCYKSKEE-----SSGTPAHQMNLRGCEVTPDVNISGQ 111
Query: 121 KHVFRLYCTDG---SEFLFLAPSETLMEDWVN 149
K +L +E +E W+
Sbjct: 112 KFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMA 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.092
Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 64/227 (28%)
Query: 30 RTQSFRKLQ--KLEQ-----LDQLPPVEIQGVLERKHELQSGGK---KAAVRSWKSLYTV 79
+++ + KL L+ L P E + + +R W +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 80 LCGQLLCFF-------KDQDDFVASKAATSPIIIFKARCEKAGDYTKRK------HVFRL 126
++ K + S P I + + + +Y + ++ +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 127 YCTDGSEFLFLAPSETLMED--WVNKISFH---AQLPPSLQLLS--YDD----SQKVSQY 175
+ +D + P D + + I H + P + L + D QK+ ++
Sbjct: 459 FDSDD----LIPPY----LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RH 509
Query: 176 TGTTIQEKKKTSIFEEEVGPGGYINS----DGYSN-LRNNHTSYEEL 217
T G +N+ Y + +N YE L
Sbjct: 510 DSTAWN------------ASGSILNTLQQLKFYKPYICDNDPKYERL 544
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 33.3 bits (75), Expect = 0.12
Identities = 10/111 (9%), Positives = 25/111 (22%)
Query: 218 PSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSL 277
+ + PQ A P TP + ++ ++ + P
Sbjct: 39 GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Query: 278 NNRQSVNNSKSSTLPPYVNPPYVKENSTRRPSESSSESEPTSVQRKDKRPN 328
+ + P + S ++ + + P
Sbjct: 99 PQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPP 149
Score = 31.7 bits (71), Expect = 0.44
Identities = 15/129 (11%), Positives = 29/129 (22%)
Query: 194 GPGGYINSDGYSNLRNNHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMN 253
P + G S + +PS + P + I T + ++
Sbjct: 30 MPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVP 89
Query: 254 SYGHGTIYQNIGPPQHIGPPPTSLNNRQSVNNSKSSTLPPYVNPPYVKENSTRRPSESSS 313
Q P Q P + + S P + +E
Sbjct: 90 LVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPP 149
Query: 314 ESEPTSVQR 322
++
Sbjct: 150 PITDLTLPP 158
Score = 29.4 bits (65), Expect = 2.1
Identities = 11/111 (9%), Positives = 25/111 (22%)
Query: 218 PSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSL 277
PP P A P + Q
Sbjct: 25 QPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84
Query: 278 NNRQSVNNSKSSTLPPYVNPPYVKENSTRRPSESSSESEPTSVQRKDKRPN 328
+ + + + P ++P + + +P++ ++ RP
Sbjct: 85 LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135
Score = 29.0 bits (64), Expect = 2.5
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 1/82 (1%)
Query: 218 PSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSL 277
+P P +S Q I TS+
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 278 NNRQSVNNSKSSTLPPYVNPPY 299
N+ ++N Y+ P
Sbjct: 81 ND-MHLHNVPLVDPNAYMQPQV 101
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 32.7 bits (74), Expect = 0.20
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 222 SEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSLNNRQ 281
S PP ++P D + P I T +
Sbjct: 302 SAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKA 361
Query: 282 SVNNSKSSTLPPYV---NPPYVKENSTRRPSESSS-------ESEPTSVQRKDKRPNVLS 331
V N S + P + N S+RRP+ SSS SEP+ + D P
Sbjct: 362 PVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTRATDASPGAFR 421
Query: 332 SLFRKKKATHL 342
+K++ +
Sbjct: 422 RTSGPQKSSPV 432
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 30.8 bits (69), Expect = 0.45
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCEKAGDYTKRKHVFR 125
K A K + VL +L F +++D + + + + +
Sbjct: 79 LKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEKGLF 138
Query: 126 LYCTDGSE---FLFLAPSETLMEDWVNKIS 152
L ++ A S+ W+ I
Sbjct: 139 LISMGMTDPEMVEVHASSKEERNSWIQIIQ 168
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.0 bits (70), Expect = 0.50
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 150 KISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEVGPGGYINSDGYSNLRN 209
+ + P L +DD + T ++S + P S + ++
Sbjct: 323 REAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESS----DAAP-----SADAAQMKE 373
Query: 210 NHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQH 269
+++ + PP PPQ P +P PPQ
Sbjct: 374 MMAMMQKMQQQQAAYPPQGYAPPPQ--GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQG 431
Query: 270 IGP--PPTSLNNR 280
P PP ++N+
Sbjct: 432 APPAAPPQGVDNQ 444
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 30.7 bits (69), Expect = 0.64
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 205 SNLRNNHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHG-TIYQN 263
S ++N H++ + LP H+ PP P + T + +YGH +
Sbjct: 22 SAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIK 81
Query: 264 IGPPQHIGPPPTSLNNRQSVNNSKSSTLPPY 294
P P S+ +++ ++S+
Sbjct: 82 SEYPDPYTSSPESIMGYSYMDSYQTSSPASI 112
Score = 30.0 bits (67), Expect = 1.1
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 11/107 (10%)
Query: 224 PPPLPQTAPPQKHISP---NNTPQRNPWPSDMNSYGHGTIYQ---NIGPPQHIGPPPTSL 277
+ Q P IS N P + + + P PP SL
Sbjct: 7 MSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSL 66
Query: 278 NNRQSVNN-----SKSSTLPPYVNPPYVKENSTRRPSESSSESEPTS 319
Q+ + KS PY + P + S +S
Sbjct: 67 QGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP 113
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 30.6 bits (69), Expect = 0.75
Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 23/161 (14%)
Query: 2 RKDLKRA-ESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQ-LDQLPP-VEIQGVLERK 58
+++L+ A ++M+ DL + +R ++ R++ + ++ L + G +
Sbjct: 184 KENLRLALDAMR-DLAQC-----VNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKID 237
Query: 59 HELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE------ 112
EL+ RS Y L + L K + D KA + +
Sbjct: 238 GELKI--TSVERRSKTDRYAFLLDKALLICKRRGDSYDLKA-----SVNLHSFQVRDDSS 290
Query: 113 KAGDYTKRKHVFRLYCTDGSE-FLFLAPSETLMEDWVNKIS 152
D K H+F L G++ + + L + W+ +
Sbjct: 291 GERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFE 331
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 28.9 bits (64), Expect = 0.96
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 52 QGVLERKHELQSGGKKAAVRSWKSLY-TVLCG-QLLCFFKDQDDFVASKAATSPIIIFKA 109
QG L + Q K R SLY C L + + + + +I +
Sbjct: 15 QGFLYLQQ--QQTFGKKWRRFGASLYGGSDCALARLELQEGPEK--PRRCEAARKVIRLS 70
Query: 110 RCEK----AGDYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKIS 152
C + G+ + + + LA DWV I
Sbjct: 71 DCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAERGDWVQAIC 117
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 28.8 bits (64), Expect = 1.3
Identities = 4/45 (8%), Positives = 17/45 (37%)
Query: 116 DYTKRKHVFRLYCTDGSEFLFLAPSETLMEDWVNKISFHAQLPPS 160
+ +F + + + + ++W+ +++ + PS
Sbjct: 86 EIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSGPS 130
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 30.0 bits (67), Expect = 1.3
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 23/161 (14%)
Query: 2 RKDLKRA-ESMKADLTKKPKRTPSFTTRRRTQSFRKLQKLEQL--DQLPPVEIQGVLERK 58
+++L+ A ++M+ DL + +R ++ R++ + + + G +
Sbjct: 356 KENLRLALDAMR-DLAQC-----VNEVKRDNETLRQITNFQLSIENLDQSLAHYGRPKID 409
Query: 59 HELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPIIIFKARCE------ 112
EL+ RS Y L + L K + D K + +
Sbjct: 410 GELKI--TSVERRSKMDRYAFLLDKALLICKRRGDSYDLKD-----FVNLHSFQVRDDSS 462
Query: 113 KAGDYTKRKHVFRLYCTDGSE-FLFLAPSETLMEDWVNKIS 152
D K H+F L G++ + + L + W+ +
Sbjct: 463 GDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFE 503
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta
propeller, abscisic acid, non iron, oxidoreductase;
3.20A {Zea mays}
Length = 529
Score = 30.0 bits (67), Expect = 1.3
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 222 SEPPPLPQTAPPQKHISPNNTPQR-NPWPSDMNSYGH------GTIYQNIGPPQHIGPPP 274
P LP TA P I+ N P P ++ G G +N G P
Sbjct: 33 ERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARN-GANPCFDPVA 91
Query: 275 TS 276
Sbjct: 92 GH 93
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.9 bits (67), Expect = 1.6
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 14/91 (15%)
Query: 218 PSPHSEPPPLPQT----------APPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPP 267
P+ P T APP +P P+ N T + G
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP----TPPRPAGDN 60
Query: 268 QHIGPPPTSLNNRQSVNNSKSSTLPPYVNPP 298
+ +L ++++ YV PP
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPP 91
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 29.1 bits (65), Expect = 2.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 121 KHVFRLYCTDGSE-FLFLAPSETLMEDWVNKI 151
K+ F+L+ + E LF A W+
Sbjct: 327 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAF 358
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme,
transferase; HET: BGC PG4; 1.87A {Thermococcus
kodakarensis} PDB: 3n92_A* 3n8t_A*
Length = 562
Score = 29.5 bits (65), Expect = 2.1
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 259 TIYQNIGPPQHIGPPPTS-LNNRQSVNNSKSSTLPPYVNP-PYVKENSTRRPSESSSESE 316
+ + IG L + +N V PYV EN
Sbjct: 494 RLANELVRYVKIGEFDVKLLEELEERDN-----PFRPVVVGPYVSENPPELEEYVEPPEV 548
Query: 317 PTSVQRKDKRPNVL 330
P + +++P VL
Sbjct: 549 PPEKEETEEKPKVL 562
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 28.3 bits (63), Expect = 3.4
Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 66 KKAAVRSWKSLYTVLCGQLLCFFKDQDDFVASKAATSPII-----------IFKARCEKA 114
+ ++ +L LL + QD+ + K+ + + + +
Sbjct: 267 WRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMT 326
Query: 115 GDYTKRKHVFRLYCTDGSE---FLFLAPSETLMEDWVNKIS 152
+ F + T E + +A + + ++W I+
Sbjct: 327 REVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALIT 367
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 26.7 bits (59), Expect = 4.1
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 215 EELPSPHSEPPPLPQTA--PPQKHISPNNTP 243
E++PS +E P+ A PP +S + P
Sbjct: 60 EKMPSSENEKAVSPKKALLPPTVSLSATSGP 90
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 28.4 bits (62), Expect = 4.4
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 9/71 (12%)
Query: 218 PSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSL 277
P+ + Q P + P + P P + PP + PP L
Sbjct: 3 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPP---------ITDLTLPPPPLVIPPERML 53
Query: 278 NNRQSVNNSKS 288
+ N S
Sbjct: 54 VPSELSNASPD 64
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 28.0 bits (62), Expect = 5.0
Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 27/151 (17%)
Query: 29 RRTQSFRKLQKL-EQLDQLPPVEIQ-GVLERKHELQSGG----------KKAAVRSWKSL 76
++T++ +L+ ++LD + L + + L
Sbjct: 254 KQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDL 313
Query: 77 YTVLCGQLLCFFKDQDDFVASKAATSPII-----------IFKARCEKAGDYTKRKHVFR 125
+ +L LL + QD+ + K + + + K K F
Sbjct: 314 HVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFF 373
Query: 126 LYCTDGSE----FLFLAPSETLMEDWVNKIS 152
+ CT + +A + + W+ +
Sbjct: 374 IICTSKLGPPQIYELVALTSSDKNTWMELLE 404
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 28.0 bits (61), Expect = 5.5
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 201 SDGYSNLRNNHTSYEELPSPHSEPPPLPQTAPPQKHISPNNTPQRN 246
S+GY+N N ++ P S PPP QT +
Sbjct: 8 SNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGR 53
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 27.8 bits (61), Expect = 6.7
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 1/81 (1%)
Query: 218 PSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSL 277
+ P+ PP IS P P+ + G T + P + +
Sbjct: 54 SPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP-TLGFSTGSPQLSSPMNPVSSSEDI 112
Query: 278 NNRQSVNNSKSSTLPPYVNPP 298
+N P N
Sbjct: 113 KPPLGLNGVLKVPAHPSGNMA 133
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 27.5 bits (61), Expect = 6.8
Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 27/151 (17%)
Query: 29 RRTQSFRKLQKL-EQLDQLPPVEIQ-GVLERKHELQSGG----------KKAAVRSWKSL 76
++T++ +L+ ++LD + L + + L
Sbjct: 212 KQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDL 271
Query: 77 YTVLCGQLLCFFKDQDDFVASKAATSPII-----------IFKARCEKAGDYTKRKHVFR 125
+ +L LL + QD+ + K + + + K K F
Sbjct: 272 HVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFF 331
Query: 126 LYCTDGS----EFLFLAPSETLMEDWVNKIS 152
+ CT + +A + + W+ +
Sbjct: 332 IICTSKLGPPQIYELVALTSSDKNTWMELLE 362
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 27.5 bits (60), Expect = 7.2
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 135 LFLAPSETLMEDWVNKISFHAQLPPSLQLLSYDDSQKVSQYTGTTIQEKKKTSIFEEEV 193
L LAP++ L+ LPP K+ TG E++ + +V
Sbjct: 56 LMLAPTKPLVLQHAESFRRLFNLPPE----------KIVALTGEKSPEERSKAWARAKV 104
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 27.2 bits (60), Expect = 7.5
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 36 KLQKLEQLDQLPPVEIQGVLERKHELQSGGKKAAVRSWKSLYTVLCGQLLCFFKDQDDFV 95
L L +L V + + K+ A + L + + F K +++
Sbjct: 200 YDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREE-N 258
Query: 96 ASKAATSPIIIFKAR--CEKAG---DYTKRKHVFRLYCTDGSE-FLFLAPSETLMEDWVN 149
+P +K G + F ++ E ++ AP+ + WVN
Sbjct: 259 GEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVN 318
Query: 150 KIS 152
I
Sbjct: 319 AIR 321
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 27.2 bits (60), Expect = 8.4
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 121 KHVFRLYCTDGSE-FLFLAPSETLMEDWVNKI 151
K+ FRL+ + L + W+
Sbjct: 404 KNAFRLHRGATGDSHLLCTRKPEQKQRWLKAF 435
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 26.9 bits (59), Expect = 8.6
Identities = 15/81 (18%), Positives = 20/81 (24%), Gaps = 1/81 (1%)
Query: 218 PSPHSEPPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQNIGPPQHIGPPPTSL 277
P A +P P P G +GPP + PP
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-PGMMGPPPGMRPPMGPP 202
Query: 278 NNRQSVNNSKSSTLPPYVNPP 298
+ PP + PP
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPP 223
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 27.4 bits (61), Expect = 9.7
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 224 PPPLPQTAPPQKHISPNNTPQRNPWPSDMNSYGHGTIYQ 262
P P+ PP + T + W + YQ
Sbjct: 7 TDPAPEPEPPVEGQWTALTASPDTWD---ETKRADISYQ 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.381
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,959,037
Number of extensions: 280461
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 122
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.6 bits)