Query psy10627
Match_columns 92
No_of_seqs 103 out of 417
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:20:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.8 1.2E-18 2.6E-23 144.1 9.9 90 2-91 1940-2036(2473)
2 KOG0040|consensus 99.6 1.8E-15 3.9E-20 124.4 7.7 90 2-91 396-492 (2399)
3 KOG0517|consensus 99.6 5.9E-15 1.3E-19 122.8 10.2 91 2-92 1515-1612(2473)
4 KOG0040|consensus 99.6 3.3E-15 7.1E-20 122.9 8.4 90 2-91 1309-1405(2399)
5 cd00176 SPEC Spectrin repeats, 99.2 5.4E-10 1.2E-14 74.1 11.0 89 2-90 35-130 (213)
6 smart00150 SPEC Spectrin repea 98.8 1.6E-08 3.6E-13 60.2 6.8 61 2-62 33-100 (101)
7 PF00435 Spectrin: Spectrin re 98.6 2.6E-07 5.5E-12 55.1 7.3 63 2-64 36-105 (105)
8 cd00176 SPEC Spectrin repeats, 97.6 0.00038 8.2E-09 45.9 7.5 64 2-65 141-212 (213)
9 PF07106 TBPIP: Tat binding pr 78.5 11 0.00024 24.8 5.9 55 4-62 113-168 (169)
10 KOG4603|consensus 72.3 29 0.00062 23.9 8.4 63 2-68 118-181 (201)
11 cd04435 DEP_fRom2 DEP (Disheve 52.3 9.9 0.00021 22.8 1.4 16 61-76 52-67 (82)
12 PF02970 TBCA: Tubulin binding 42.0 50 0.0011 19.7 3.4 30 2-31 9-38 (90)
13 PF11616 EZH2_WD-Binding: WD r 38.2 52 0.0011 15.9 2.8 21 41-61 8-28 (30)
14 PF11544 Spc42p: Spindle pole 30.5 92 0.002 18.4 3.1 31 3-33 1-31 (76)
15 PF03622 IBV_3B: IBV 3B protei 28.6 43 0.00093 18.9 1.4 24 22-45 3-26 (64)
16 KOG4196|consensus 28.6 1.2E+02 0.0026 19.8 3.7 31 2-32 90-120 (135)
17 KOG4286|consensus 28.0 3E+02 0.0065 23.5 6.5 60 8-67 270-336 (966)
18 KOG4286|consensus 26.5 4.1E+02 0.0089 22.7 8.6 35 3-37 136-170 (966)
19 PF14483 Cut8_M: Cut8 dimerisa 23.0 46 0.00099 16.8 0.8 18 2-19 19-36 (38)
20 PF04325 DUF465: Protein of un 22.2 1.1E+02 0.0023 16.0 2.3 16 3-18 2-17 (49)
21 PF09903 DUF2130: Uncharacteri 20.3 3.4E+02 0.0074 19.5 6.6 62 5-66 168-236 (267)
22 PRK10626 hypothetical protein; 20.2 3.4E+02 0.0073 19.4 5.2 49 26-80 172-226 (239)
No 1
>KOG0517|consensus
Probab=99.78 E-value=1.2e-18 Score=144.12 Aligned_cols=90 Identities=24% Similarity=0.403 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCCh---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREP---E----LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEA 74 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~---e----l~~L~~~~~~l~~~We~R~~~L~q~~~lq~F~rd 74 (92)
|+.|+.+|+.+++||++|++.|..|++.|++|+..+|| | +..|.+++..+.+.|+.|+..|++.++.++|.||
T Consensus 1940 ~ellm~~Hq~lkaEieARe~~f~~c~eLG~~lL~~~hyas~EI~ekl~~L~~~r~e~~~~W~~r~e~Lq~~lev~~F~Rd 2019 (2473)
T KOG0517|consen 1940 VELLMNNHQGLKAEIEAREDNFSACIELGKSLLLRKHYASEEIKEKLRALQDRREELYEKWERRWEWLQQILEVHQFARD 2019 (2473)
T ss_pred HHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999998 2 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhcccC
Q psy10627 75 ADQAENWLVTKEATEYR 91 (92)
Q Consensus 75 a~q~e~Wl~~qE~~L~~ 91 (92)
|.++|+|+.+||++|.+
T Consensus 2020 A~~aeawl~aQep~L~S 2036 (2473)
T KOG0517|consen 2020 AKVAEAWLIAQEPYLRS 2036 (2473)
T ss_pred HHHHHHHHHhchhHhhH
Confidence 99999999999999976
No 2
>KOG0040|consensus
Probab=99.61 E-value=1.8e-15 Score=124.36 Aligned_cols=90 Identities=27% Similarity=0.437 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEA 74 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e-------l~~L~~~~~~l~~~We~R~~~L~q~~~lq~F~rd 74 (92)
++.+|..|+++|.||++|.++|+.--..|+.|+..+||. +..+...+..|...|+.|+.++.+|.++|.|+||
T Consensus 396 ~e~lL~~hqEhK~eIds~~dSf~~~~~~gq~l~~~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~yeqcmd~~lfyrd 475 (2399)
T KOG0040|consen 396 AEALLDRHQEHKGEIDAREDSFKSADESGQKLVEAGHYASDEVREKLEILDNEKSALLELWEERRIQYEQCMDLQLFYRD 475 (2399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhccccHHHHHccccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999999999999999999999983 8889999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhcccC
Q psy10627 75 ADQAENWLVTKEATEYR 91 (92)
Q Consensus 75 a~q~e~Wl~~qE~~L~~ 91 (92)
..+++.||+.+++||++
T Consensus 476 teq~d~wmskqeafl~n 492 (2399)
T KOG0040|consen 476 TEQVDTWMSKQEAFLAN 492 (2399)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999975
No 3
>KOG0517|consensus
Probab=99.60 E-value=5.9e-15 Score=122.76 Aligned_cols=91 Identities=29% Similarity=0.367 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEA 74 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e-------l~~L~~~~~~l~~~We~R~~~L~q~~~lq~F~rd 74 (92)
|..|+++|+.+.+||++|+|.++.+...|+.|+.++||+ +..|+..|+.|..+-+.|...|+.++..|+|+.|
T Consensus 1515 ~q~l~KK~q~Lq~EI~~H~prI~~vl~~gq~Li~~~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQY~fD 1594 (2473)
T KOG0517|consen 1515 VQSLHKKNQTLQAEIKGHQPRINDVLERGQSLIDSGHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQYYFD 1594 (2473)
T ss_pred HHHHHHHhHHHHHHHHhcchHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999984 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhcccCC
Q psy10627 75 ADQAENWLVTKEATEYRP 92 (92)
Q Consensus 75 a~q~e~Wl~~qE~~L~~~ 92 (92)
|..+|+||+.|++++.++
T Consensus 1595 aaE~EaWm~Eqel~m~se 1612 (2473)
T KOG0517|consen 1595 AAEAEAWMGEQELYMMSE 1612 (2473)
T ss_pred HHHHHHHHhhhHHHHhhh
Confidence 999999999999998763
No 4
>KOG0040|consensus
Probab=99.60 E-value=3.3e-15 Score=122.86 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCCh---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREP---E----LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEA 74 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~---e----l~~L~~~~~~l~~~We~R~~~L~q~~~lq~F~rd 74 (92)
++.++.+|+++..+|++|.+.|+.+.++|..|+.++|+ + +..+...+..+..+|..|+..|++|+++|+|.+|
T Consensus 1309 ~eAllerhqe~rte~daRa~tfqA~eqf~~~ll~~~h~As~eie~kl~~~~l~r~~le~awv~rr~~ldq~lelqLf~~d 1388 (2399)
T KOG0040|consen 1309 AEALLERHQEHRTEIDARAGTFQAFEQFGNELLDSGHYASPEIEKKLQAVKLERDDLEKAWVKRRKILDQCLELQLFQRD 1388 (2399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhHHHHHhh
Confidence 68899999999999999999999999999999999996 2 8889999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhcccC
Q psy10627 75 ADQAENWLVTKEATEYR 91 (92)
Q Consensus 75 a~q~e~Wl~~qE~~L~~ 91 (92)
|+++++||+.+|+||+.
T Consensus 1389 ceq~e~~maare~~l~d 1405 (2399)
T KOG0040|consen 1389 CEQAESWMSAREAFLAD 1405 (2399)
T ss_pred hHHHHHHHHHHHHhhcc
Confidence 99999999999999853
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.19 E-value=5.4e-10 Score=74.11 Aligned_cols=89 Identities=29% Similarity=0.421 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEA 74 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e-------l~~L~~~~~~l~~~We~R~~~L~q~~~lq~F~rd 74 (92)
++.++++|+.+..+|..+.+.++.+...|+.|+..++++ +..|..+|..|...+..|...|+.+++...|+.+
T Consensus 35 ~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~ 114 (213)
T cd00176 35 VEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD 114 (213)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998742 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhccc
Q psy10627 75 ADQAENWLVTKEATEY 90 (92)
Q Consensus 75 a~q~e~Wl~~qE~~L~ 90 (92)
+..+..||...+..|.
T Consensus 115 ~~~l~~wl~~~e~~l~ 130 (213)
T cd00176 115 ADDLEQWLEEKEAALA 130 (213)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887764
No 6
>smart00150 SPEC Spectrin repeats.
Probab=98.85 E-value=1.6e-08 Score=60.20 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRL 62 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e-------l~~L~~~~~~l~~~We~R~~~L 62 (92)
|+.++++|+.++.||.++.+.++.+...|..|+..++++ +..|..+|..|...+..|+..|
T Consensus 33 ~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 33 VEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999999999998763 8889999999999999998876
No 7
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.63 E-value=2.6e-07 Score=55.11 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDH 64 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e-------l~~L~~~~~~l~~~We~R~~~L~q 64 (92)
++.++.+|+.+..||..+.+.++.+...|..|+..+|++ +..|...|..|...+..|+..|.+
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999999999998887652 889999999999999999998874
No 8
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=97.65 E-value=0.00038 Score=45.86 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE--------LTKLDELRRQLASSWEEQRTRLDHA 65 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e--------l~~L~~~~~~l~~~We~R~~~L~q~ 65 (92)
++.++..|+.++.+|.++.+.+..+...|..|+..+++. +..|...|..|...+..|...|..+
T Consensus 141 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 141 VEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577899999999999999999999999999999998751 8899999999999999999988764
No 9
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.54 E-value=11 Score=24.81 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHH
Q psy10627 4 KVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREP-ELTKLDELRRQLASSWEEQRTRL 62 (92)
Q Consensus 4 ~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~-el~~L~~~~~~l~~~We~R~~~L 62 (92)
-|...-..++.||..-+..+..+.. |...+. + +...+...+......|-.|+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs---~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVS---PEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666777777777777777766 443332 3 39999999999999999999764
No 10
>KOG4603|consensus
Probab=72.30 E-value=29 Score=23.87 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPE-LTKLDELRRQLASSWEEQRTRLDHAHQA 68 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~h~e-l~~L~~~~~~l~~~We~R~~~L~q~~~l 68 (92)
++.+.+.-++++.|..+..+++..+. .|...+. |+ ...+...+..-...|-.|++......+-
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k-~g~~~vt---pedk~~v~~~y~~~~~~wrk~krmf~ei~d~ 181 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIK-AGTNHVT---PEDKEQVYREYQKYCKEWRKRKRMFREIIDK 181 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999999998884 4554444 43 8888899999999999999988766553
No 11
>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins. Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.
Probab=52.34 E-value=9.9 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhHHhHH
Q psy10627 61 RLDHAHQAQMFKEAAD 76 (92)
Q Consensus 61 ~L~q~~~lq~F~rda~ 76 (92)
+|-.+++.|+|+.|+.
T Consensus 52 llgRsLdaQkfFhdV~ 67 (82)
T cd04435 52 LLGRSLDAQKFFHDVT 67 (82)
T ss_pred HHHHHHHHhHhhhhcc
Confidence 6679999999999985
No 12
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=41.98 E-value=50 Score=19.74 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGL 31 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~ 31 (92)
+.+|++.+..+..|+......++.+...|.
T Consensus 9 vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~ 38 (90)
T PF02970_consen 9 VKRLLKEEASYEKEVEEQEARLEKMKAEGE 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 678999999999999999999999987754
No 13
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=38.19 E-value=52 Score=15.94 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10627 41 LTKLDELRRQLASSWEEQRTR 61 (92)
Q Consensus 41 l~~L~~~~~~l~~~We~R~~~ 61 (92)
...++++-+-|++.|..|+.+
T Consensus 8 r~Ki~e~t~iLN~eWk~lRiQ 28 (30)
T PF11616_consen 8 RQKIQERTDILNEEWKKLRIQ 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 456777888889999887653
No 14
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=30.46 E-value=92 Score=18.36 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=22.4
Q ss_pred HHHHHHHHhhHHHHhhchHhHHHHHHHhhhh
Q psy10627 3 NKVYSILFSSQAEIDGRQETFKSLKEFGLKV 33 (92)
Q Consensus 3 e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L 33 (92)
+.|+++..+++..+...++.++++.....+|
T Consensus 1 n~Li~qNk~L~~kL~~K~eEI~rLn~lv~sL 31 (76)
T PF11544_consen 1 NELIKQNKELKKKLNDKQEEIDRLNILVGSL 31 (76)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999997766554
No 15
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=28.60 E-value=43 Score=18.93 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.7
Q ss_pred hHHHHHHHhhhhcCCCChHHHHHH
Q psy10627 22 TFKSLKEFGLKVSPPREPELTKLD 45 (92)
Q Consensus 22 ~~~~l~~~G~~L~~~~h~el~~L~ 45 (92)
.|+++.++|++++++-.++|+.+.
T Consensus 3 ~fe~iietG~qviqqisf~Lq~IS 26 (64)
T PF03622_consen 3 DFEAIIETGEQVIQQISFNLQHIS 26 (64)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHH
Confidence 588899999999887665544443
No 16
>KOG4196|consensus
Probab=28.60 E-value=1.2e+02 Score=19.78 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHhhchHhHHHHHHHhhh
Q psy10627 2 INKVYSILFSSQAEIDGRQETFKSLKEFGLK 32 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~ 32 (92)
|+.|-.......-|.++....|+++..+|-.
T Consensus 90 v~~L~~e~s~~~~E~da~k~k~e~l~~~~~~ 120 (135)
T KOG4196|consen 90 VEKLKEENSRLRRELDAYKSKYEALQNSAVS 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666777788999999999999998874
No 17
>KOG4286|consensus
Probab=27.95 E-value=3e+02 Score=23.46 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=44.2
Q ss_pred HHHhhHHHHhhchHhHHHHHHHhhhhcCCC-ChH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10627 8 ILFSSQAEIDGRQETFKSLKEFGLKVSPPR-EPE------LTKLDELRRQLASSWEEQRTRLDHAHQ 67 (92)
Q Consensus 8 ~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~-h~e------l~~L~~~~~~l~~~We~R~~~L~q~~~ 67 (92)
+-..++.||+.-...++.+...+.+|...+ |++ ++.|..+|.-|...=..|-..|..++.
T Consensus 270 ~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlrna~~ 336 (966)
T KOG4286|consen 270 KVKALRGEIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVSVPDRLTQLRNAHR 336 (966)
T ss_pred HHHHHHhhcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457777777777788888888887765 332 888888898888888888877776653
No 18
>KOG4286|consensus
Probab=26.49 E-value=4.1e+02 Score=22.70 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=29.5
Q ss_pred HHHHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCC
Q psy10627 3 NKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPR 37 (92)
Q Consensus 3 e~ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~ 37 (92)
...-.-|..++.||.++.+.+-..++.++..+...
T Consensus 136 q~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~ 170 (966)
T KOG4286|consen 136 QKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQ 170 (966)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcC
Confidence 44456789999999999999999999999877664
No 19
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=22.98 E-value=46 Score=16.84 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhHHHHhhc
Q psy10627 2 INKVYSILFSSQAEIDGR 19 (92)
Q Consensus 2 ~e~ll~~Hq~~~~EI~~r 19 (92)
+..++.+|.++..+|.+.
T Consensus 19 L~~l~~~HPei~~~i~~~ 36 (38)
T PF14483_consen 19 LQSLCERHPEIQQEIRSI 36 (38)
T ss_dssp HHHHHHHSTHHHHHHHTT
T ss_pred HHHHHHhChhHHHHHHhh
Confidence 467888999998888653
No 20
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=22.20 E-value=1.1e+02 Score=15.96 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=13.3
Q ss_pred HHHHHHHHhhHHHHhh
Q psy10627 3 NKVYSILFSSQAEIDG 18 (92)
Q Consensus 3 e~ll~~Hq~~~~EI~~ 18 (92)
..|..+|.++..+|..
T Consensus 2 ~~L~~~h~~Ld~~I~~ 17 (49)
T PF04325_consen 2 ARLFEEHHELDKEIHR 17 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4688899999988876
No 21
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=20.29 E-value=3.4e+02 Score=19.53 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHhhHHHHhhchHhHHHHHHHhhhhcCCC-----ChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10627 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSPPR-----EPE--LTKLDELRRQLASSWEEQRTRLDHAH 66 (92)
Q Consensus 5 ll~~Hq~~~~EI~~r~~~~~~l~~~G~~L~~~~-----h~e--l~~L~~~~~~l~~~We~R~~~L~q~~ 66 (92)
.+-+-..++..+....+....+.+++..+-..- +++ ...+......+...|..|...+...+
T Consensus 168 ~~i~~~~~k~~~~~~~~k~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~ 236 (267)
T PF09903_consen 168 AAIKSAKYKKEQENKKEKMEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLL 236 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667777777777777777755443221 122 77789999999999999999988776
No 22
>PRK10626 hypothetical protein; Provisional
Probab=20.24 E-value=3.4e+02 Score=19.44 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=26.9
Q ss_pred HHHHhhhhcCC-C-Ch-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-HHHHHH
Q psy10627 26 LKEFGLKVSPP-R-EP-E--LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEA-ADQAEN 80 (92)
Q Consensus 26 l~~~G~~L~~~-~-h~-e--l~~L~~~~~~l~~~We~R~~~L~q~~~lq~F~rd-a~q~e~ 80 (92)
+.+.|.+.+.+ | .+ . +..|-.....+...|+ .|.-+++.|..+ |+.+.+
T Consensus 172 ~nemg~k~~~~~G~~~l~~~m~~lgglq~~Ie~e~~------~q~~d~~~~~~~vC~~~~~ 226 (239)
T PRK10626 172 INEMGAKAVLKSGGNPLQAVLGSLGGLQQAIQTEWK------NQEKDFQQFGKDVCSRVVT 226 (239)
T ss_pred HHHHHHHHHhccCchhHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 33556655542 2 22 1 5555555567777777 466677777655 344443
Done!