RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10627
(92 letters)
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 35.9 bits (83), Expect = 0.001
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKV-------SPPREPELTKLDELRRQLASSWEEQRTRLDHA 65
+AE+ +E ++L E G ++ + + L +L++ +L EE+R RL+ A
Sbjct: 46 EAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEA 105
Query: 66 HQAQMFKEAADQAENWLVTKEAT 88
Q F AD E WL KEA
Sbjct: 106 LDLQQFFRDADDLEQWLEEKEAA 128
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo
and salvage pathways of DTTP synthesis. Catalytic
activity: ATP + thymidine 5'-phosphate = ADP +
thymidine 5'-diphosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 28.1 bits (63), Expect = 0.57
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 16 IDG------RQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQ 69
IDG K L+E G V REP T + E R+L E L +A
Sbjct: 11 IDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLL--NENDEPLTDKAEAL 68
Query: 70 MFKEAADQAE 79
+F AAD+ E
Sbjct: 69 LF--AADRHE 76
>gnl|CDD|236137 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
Length = 665
Score = 27.8 bits (63), Expect = 0.83
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 7 SILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTK-LDELRRQLASSWEEQRTRLDH 64
L SQ+E + LK +G V+P +L ++E+ EE+R L +
Sbjct: 232 GELPDSQSEA------LEFLKAWGFPVNP--YRKLCTSIEEVLAFYE-EIEEERHDLPY 281
>gnl|CDD|172826 PRK14350, ligA, NAD-dependent DNA ligase LigA; Provisional.
Length = 669
Score = 27.5 bits (61), Expect = 0.89
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSP 35
VY IL+SS E+ + F LK+FG KV+P
Sbjct: 219 VYDILYSS-LELKTNHDAFDKLKKFGFKVNP 248
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 27.0 bits (60), Expect = 1.4
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 32 KVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQ 77
K P P+ + +E R L S EE R RL + Q +E Q
Sbjct: 103 KAVNPFTPQPGQREERRPTLESE-EEWRARLKREQEEQYLRERQRQ 147
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 27.1 bits (60), Expect = 1.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 24 KSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQMFKE 73
K L+ + P +PELT+ DE+ A + E +R +D + FK
Sbjct: 161 KVLEMLDPRFDPLEDPELTRYDEVT---AETDEVERVPVDELDIPEKFKR 207
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 26.4 bits (58), Expect = 2.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 21 ETFKSLKEFGLKVSPP-REPELTKLDELRRQLAS 53
+T K LKE G KV +E KL EL+ +AS
Sbjct: 577 QTEKQLKELGDKVPADVKEKVEAKLKELKDAIAS 610
>gnl|CDD|218647 pfam05591, DUF770, Protein of unknown function (DUF770). This
family consists of several proteins of unknown function
from various bacterial species.
Length = 159
Score = 25.9 bits (58), Expect = 2.5
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 22 TFKSLKEFGLKVSPPR----EPELTKLDELRRQLAS 53
TFKS+ +F SP PEL KL ELR LA
Sbjct: 93 TFKSMDDF----SPDAIARQVPELKKLLELREALAD 124
>gnl|CDD|182258 PRK10130, PRK10130, transcriptional regulator EutR; Provisional.
Length = 350
Score = 26.0 bits (57), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 43 KLDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEATEYR 91
+L+ +RR+L S W + T K+AA Q W + + AT+Y+
Sbjct: 293 RLNAVRRELISPWSQSTT----------VKDAAMQWGFWHLGQFATDYQ 331
>gnl|CDD|132401 TIGR03358, VI_chp_5, type VI secretion protein, VC_A0107 family.
Work by Mougous, et al. (2006), describes IAHP-related
loci as a type VI secretion system (PMID:16763151). This
protein family is associated with type VI secretion
loci, although not treated explicitly by Mougous, et al
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 159
Score = 25.7 bits (57), Expect = 3.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 22 TFKSLKEFGLKVSPPREPELTKLDELRRQLAS 53
F+S+ +F + PEL KL E R L
Sbjct: 93 KFESMDDFSPDAVAKQVPELKKLLEAREALRD 124
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 25.7 bits (57), Expect = 3.8
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 24 KSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQAE 79
+ L+E G+KV REP T + E R+L + EE +L +A +F AAD+A+
Sbjct: 25 ERLEERGIKVVLTREPGGTPIGEKIRELLLNGEE---KLSPKAEALLF--AADRAQ 75
>gnl|CDD|203599 pfam07236, Phytoreo_S7, Phytoreovirus S7 protein. This family
consists of several Phytoreovirus S7 proteins which are
thought to be viral core proteins.
Length = 506
Score = 25.6 bits (56), Expect = 4.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 SPPREPELTKLDELRRQLASSWEE 57
S + E +KLDELRR + WEE
Sbjct: 290 SVFSKEEHSKLDELRRTESDKWEE 313
>gnl|CDD|236836 PRK11072, PRK11072, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed.
Length = 943
Score = 25.6 bits (57), Expect = 4.4
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 34 SPPREPELTKLDELRRQLASSWEE----QRTRLDHAHQAQMFK-EAADQAENWLVTK 85
P DELR+ L E+ Q L QAQ+ + AAD A V K
Sbjct: 587 QPTDWDAYR--DELRQYLLRVPEDDEEQQMEALRQFKQAQVLRIAAADIAGVLPVMK 641
>gnl|CDD|151959 pfam11522, Pik1, Yeast phosphatidylinositol-4-OH kinase Pik1.
Pik1 is a regulator of membrane traffic and
participates in the mating-pheromone
signal-transduction cascade. The protein is localised
to the nucleus and cytoplasm in the Golgi. Pik1 is
thought to have an actin-independent role in membrane
transport.
Length = 50
Score = 24.2 bits (53), Expect = 4.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 1 MINKVYSILFSSQAEIDGRQE 21
+INK+ +ILF++ +E +
Sbjct: 10 VINKLQNILFNTSSESVKNPK 30
>gnl|CDD|224588 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 25.6 bits (56), Expect = 5.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 22 TFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAH 66
F+ K K+ R L LD LR ++ +S E QR L+ H
Sbjct: 7 LFRQKKMRKKKLDKRRRVYLRYLDVLRDEVTASAEAQRASLNIHH 51
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 25.2 bits (55), Expect = 5.7
Identities = 10/19 (52%), Positives = 18/19 (94%)
Query: 42 TKLDELRRQLASSWEEQRT 60
T+LDE++RQLA++ +E++T
Sbjct: 669 TQLDEMQRQLAAAEDEKKT 687
>gnl|CDD|226047 COG3516, COG3516, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 169
Score = 25.0 bits (55), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 22 TFKSLKEFGLKVSPPREPELTKLDELRRQLA 52
TF+S+ +F + PEL KL E R LA
Sbjct: 98 TFESMDDFSPDAVARQVPELKKLLEARTALA 128
>gnl|CDD|215506 PLN02937, PLN02937, Putative isoaspartyl peptidase/L-asparaginase.
Length = 414
Score = 25.2 bits (55), Expect = 5.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 73 EAADQAENWLVTKEATE 89
E ++AE WLVT+ A E
Sbjct: 154 ETVEEAEKWLVTERAKE 170
>gnl|CDD|111185 pfam02263, GBP, Guanylate-binding protein, N-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 264
Score = 25.0 bits (55), Expect = 6.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 10 FSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQR 59
FS E+DG T E LK+S + EL + R + S + +++
Sbjct: 166 FSLPLELDGGPITGDEYLENRLKLSQGQHEELQNFNLPRECIRSFFPKRK 215
>gnl|CDD|147874 pfam05957, DUF883, Bacterial protein of unknown function
(DUF883). This family consists of several hypothetical
bacterial proteins of unknown function.
Length = 94
Score = 24.4 bits (54), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 43 KLDELRRQLASSWEEQRTRL-DHAHQAQM-FKEAADQAE 79
+ +ELR + ++ ++ R RL D A A ++AAD A+
Sbjct: 28 EAEELRERAEAALDDARERLGDAADAAAERARDAADAAD 66
>gnl|CDD|225449 COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme
metabolism].
Length = 322
Score = 24.9 bits (55), Expect = 7.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 43 KLDELRRQLASSWEEQRTRLDHAHQAQMFK 72
LDE+ R+L R +A+ F
Sbjct: 204 SLDEILRKLEERATLLPVRKRLHGRAKYFI 233
>gnl|CDD|234400 TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This
model represents the N-terminal domain or EccCa subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 661
Score = 24.9 bits (55), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 41 LTKLDELRRQLASSWEEQRTRLDHAH 66
L LD+LRR++ + QR L H
Sbjct: 72 LRYLDQLRREVRETAAAQRAALLWRH 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.127 0.358
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,579,679
Number of extensions: 367479
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 61
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)