RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10627
(92 letters)
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 44.9 bits (106), Expect = 3e-07
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPE--------LTKLDELRRQLASSWEEQRTRLDH 64
+ EIDG Q++++ +KE G KV + L LD L WE + L
Sbjct: 46 KDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQ 105
Query: 65 AHQAQMFKEAADQAENWLVTKEAT 88
Q F++ A QAE L +E T
Sbjct: 106 CLGFQEFQKDAKQAEAILSNQEYT 129
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 44.1 bits (104), Expect = 6e-07
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHA 65
+ EID R TF++ ++FG ++ L LD+ R L +W ++R LD
Sbjct: 59 RTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQC 118
Query: 66 HQAQMFKEAADQAENWLVTKEA 87
+ Q+F +QAENW+ +EA
Sbjct: 119 LELQLFHRDCEQAENWMAAREA 140
Score = 24.5 bits (53), Expect = 7.0
Identities = 4/34 (11%), Positives = 7/34 (20%)
Query: 55 WEEQRTRLDHAHQAQMFKEAADQAENWLVTKEAT 88
+H Q F +W+
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGL 35
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 41.8 bits (98), Expect = 4e-06
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 13 QAEIDGRQETFKSLKEFG---LKVSPPREPE----LTKLDELRRQLASSWEEQRTRLDHA 65
AEI+ R + F + E G L+ E L ++ R+++ WE + RL
Sbjct: 50 NAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRML 109
Query: 66 HQAQMFKEAADQAENWLVTKEA 87
+ F A AE WL+ +E
Sbjct: 110 LEVCQFSRDASVAEAWLIAQEP 131
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 41.4 bits (97), Expect = 7e-06
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKV-------SPPREPELTKLDELRRQLASSWEEQRTRLDHA 65
+AE+ + + + + G K+ + L + + ++L + RL+ +
Sbjct: 155 EAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Query: 66 HQAQMFKEAADQAENWLVTKEAT 88
+ Q F ++ E W+ K
Sbjct: 215 LEYQQFVANVEEEEAWINEKMTL 237
Score = 31.8 bits (72), Expect = 0.020
Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWE-------EQRTRLDHA 65
+A+I ++ K L + + +++ + R + ++ +R +L+ +
Sbjct: 49 EADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNES 108
Query: 66 HQAQMFKEAADQAENWLVTKEATE 89
H+ F D E+W+ K+
Sbjct: 109 HRLHQFFRDMDDEESWIKEKKLLV 132
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 38.1 bits (88), Expect = 1e-04
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEE-------QRTRLDHA 65
E++ +++ K L+ G ++ P ++ + L + W L
Sbjct: 54 MRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 113
Query: 66 HQAQMFKEAADQAENWLVTKEAT 88
F +AE L +
Sbjct: 114 AAYFQFFSDVREAEGQLQKLQEA 136
Score = 25.4 bits (55), Expect = 3.1
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 60 TRLDHAHQAQMFKEAADQAENWLVTKEATE 89
+ + F AA + WL KE E
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEE 31
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 37.2 bits (86), Expect = 2e-04
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHA 65
+AE+ + +S+ + G K+S L + + ++L + RL+ +
Sbjct: 46 EAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 105
Query: 66 HQAQMFKEAADQAENWLVTKEA 87
+ Q F ++ E W+ K
Sbjct: 106 LEYQQFVANVEEEEAWINEKMT 127
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 35.7 bits (82), Expect = 6e-04
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHA 65
Q ++ K L + PE ++D+ L EE++ +L++
Sbjct: 50 QRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENM 109
Query: 66 HQAQMFKEAADQAENWLVTKEAT 88
+ K D E W+ KE
Sbjct: 110 YHLFQLKRETDDLEQWISEKELV 132
Score = 30.7 bits (69), Expect = 0.044
Identities = 9/78 (11%), Positives = 22/78 (28%)
Query: 11 SSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQM 70
Q +D + L + G + L+E+ L + + L ++
Sbjct: 162 IGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR 221
Query: 71 FKEAADQAENWLVTKEAT 88
+ + + K
Sbjct: 222 YFYTGAEILGLIDEKHRE 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.001
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 20 QETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRL-------DHAHQAQMFK 72
++ F F K + +E+ + S T Q F
Sbjct: 26 EDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 73 EAADQAE-NWLVTKEATEYR 91
E + +L++ TE R
Sbjct: 84 EEVLRINYKFLMSPIKTEQR 103
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 32.9 bits (75), Expect = 0.006
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 41 LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEATEYRP 92
++ + + +R +L+ +++ Q F+ A++ E W+ K
Sbjct: 21 RQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 32.6 bits (74), Expect = 0.007
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELT-KLDELRRQLASSWEEQRTRLDHAHQAQMF 71
I+ + + + ++SP L L Q A + RL F
Sbjct: 51 HQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSF 110
Query: 72 KEAADQAENWLVTKEATE 89
AA + WL KE E
Sbjct: 111 VAAATKELMWLNEKEEEE 128
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Length = 615
Score = 32.5 bits (75), Expect = 0.009
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDH 64
+ + + + +L+ +GL VS T L +R ++ W E R +DH
Sbjct: 235 CHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTL-ATDLAGVRERID-YWGEHRHEVDH 292
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 32.6 bits (74), Expect = 0.009
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPE-------LTKLDELRRQLASSWEEQRTRLDHA 65
+A+I ++ K L + + ++ +++ S +R +L+ +
Sbjct: 49 EADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNES 108
Query: 66 HQAQMFKEAADQAENWLVTKEA 87
H+ F D E+W+ K+
Sbjct: 109 HRLHQFFRDMDDEESWIKEKKL 130
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 32.4 bits (73), Expect = 0.012
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEE-------QRTRLDHA 65
++++ +++ LK+ ++ + P K++ L + W L
Sbjct: 139 MSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKEN 198
Query: 66 HQAQMFKEAADQAENWLVTKEAT 88
F E A E +L + +
Sbjct: 199 AAYFQFFEEAQSTEAYLKGLQDS 221
Score = 26.2 bits (57), Expect = 1.5
Identities = 6/61 (9%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 31 LKVSPPREPELTKLDELRRQLASS---WEEQRTRLDHAHQAQMFKEAADQAENWLVTKEA 87
L + PP + ++ + + W + + ++ + K
Sbjct: 333 LIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLK 392
Query: 88 T 88
T
Sbjct: 393 T 393
Score = 26.2 bits (57), Expect = 1.8
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQMFK 72
I + +K + + +L+E L + E+ L
Sbjct: 48 HNSIGDYRWQLDKIKA-----DLREKSAIYQLEEEYENLLKASFERMDHLRQLQN---II 99
Query: 73 EAADQAENWLVTKEATE 89
+A + W+ E E
Sbjct: 100 QATSREIMWINDCEEEE 116
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 31.8 bits (72), Expect = 0.015
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPE--------LTKLDELRRQLASSWEEQRTRLDH 64
+ +I + L+E ++ + ++ E + L + E +R RL
Sbjct: 158 EHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVD 217
Query: 65 AHQAQMFKEAADQAENWLVTKEA 87
F W+
Sbjct: 218 TGDKFRFFSMVRDLMLWMEDVIR 240
Score = 29.9 bits (67), Expect = 0.071
Identities = 11/76 (14%), Positives = 21/76 (27%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQMFK 72
Q +D L G + L+E L + + L +++ F
Sbjct: 60 QERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFY 119
Query: 73 EAADQAENWLVTKEAT 88
A + + K
Sbjct: 120 HDAKEIFGRIQDKHKK 135
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Length = 328
Score = 31.7 bits (73), Expect = 0.015
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDH 64
+ + + + +L+ +GL VS T L +R ++ W E R +DH
Sbjct: 235 CHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTT-LATDLAGVRERID-YWGEHRHEVDH 292
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA
replication, magnesium, manganese, metal-binding, NAD,
zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB:
3jsn_A*
Length = 318
Score = 31.7 bits (73), Expect = 0.019
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDH 64
+YS+ + + E L + G + R + +D + + W QR L +
Sbjct: 218 IYSVNDFTDFNARSQSEALDELDKLGFTTNKNRAR-VNNIDGVLEYIE-KWTSQRESLPY 275
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 31.5 bits (71), Expect = 0.019
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 13 QAEIDGRQETFKSLKEFGLKVSPPREPELT-KLDELRRQLASSWEEQRTRLDHAHQAQMF 71
I+ + + K K ++++ P + T KL L Q A R + H F
Sbjct: 66 HRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNF 125
Query: 72 KEAADQAENWLVTKEATE 89
A WL KE +E
Sbjct: 126 VTRATNELIWLNEKEESE 143
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus
stearothermophilus} SCOP: d.142.2.2
Length = 318
Score = 30.9 bits (71), Expect = 0.029
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDH 64
VY + + I E L+ G KV+P R +DE+ ++ W ++R +L +
Sbjct: 220 VYGLADAEALGIASHSEALDYLQALGFKVNPERRR-CANIDEVIAFVS-EWHDKRPQLPY 277
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 31.1 bits (70), Expect = 0.029
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 41 LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEATE 89
++ + E+ +L+ ++ Q+FK AD W++ K
Sbjct: 31 RQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNIL 79
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA
NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB:
3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Length = 332
Score = 30.9 bits (71), Expect = 0.036
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 VYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLDH 64
+Y++ + + E + L G + +P R+ +DE+ + + E+R+ L +
Sbjct: 226 LYTVADFGPMKAKTQFEALEELSAIGFRTNPERQ-LCQSIDEVWAYIE-EYHEKRSTLPY 283
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold,
adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus
influenzae} PDB: 3pn1_A* 3bac_A*
Length = 322
Score = 30.9 bits (71), Expect = 0.037
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 5 VYSILFSSQAEIDGRQ-ETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLD 63
Y I + ++ + LK G+ V+P DE+ + +R+ L
Sbjct: 223 AYGIGIAEGVDLPTTHYARLQWLKSIGIPVNPEIRL-CNGADEVLGFYR-DIQNKRSSLG 280
Query: 64 H 64
+
Sbjct: 281 Y 281
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 30.5 bits (69), Expect = 0.044
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 16 IDGRQETFKSLKEF-----GLKVSPPREPELTKLDELRRQLASSWEEQRTRLDHAHQAQM 70
I+G E F K F G + E + R+ + + H Q
Sbjct: 78 IEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDPQP 137
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 29.0 bits (66), Expect = 0.18
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 5 VYSILFSSQAEIDGRQ-ETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLD 63
Y + E+ K++GL VS +E+ EE R L
Sbjct: 224 CYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVT-LCESAEEVLAFYH-KVEEDRPTLG 281
Query: 64 H 64
Sbjct: 282 F 282
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 27.3 bits (60), Expect = 0.60
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 54 SWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEAT 88
S E R H A+ F++ A E W KE
Sbjct: 2 SSNEIRRLERLEHLAEKFRQKASTHETWAYGKEQI 36
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 26.3 bits (58), Expect = 0.87
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 65 AHQAQMFKEAADQAENWLVTKEA 87
Q++ + AE+W+ +EA
Sbjct: 2 NLDLQLYMRDCELAESWMSAREA 24
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
{Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
PDB: 1v9p_A*
Length = 667
Score = 26.7 bits (60), Expect = 0.99
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 5 VYSILFSSQAEIDGRQ---ETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTR 61
Y++ E G + E LKE G V E + + QR
Sbjct: 220 FYALGLGLGLEESGLKSQYELLLWLKEKGFPVEHCYEK-ALGAEGVEEVYR-RGLAQRHA 277
Query: 62 LDH 64
L
Sbjct: 278 LPF 280
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 26.3 bits (58), Expect = 1.4
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 FKSLKEFGLKV-SPPREPELTKLDELRRQLASSWEE 57
+ + E G V PR +L + EL R++A+ +
Sbjct: 363 IELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 398
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 26.1 bits (57), Expect = 2.1
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 1 MINKVYSILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRT 60
I +L A G + +E ++ + + L+ AS ++RT
Sbjct: 71 GIESRGWMLPLEAAVAPGGGGDLGAAREALVRDGFTEQDANRAIAALKAVPASQTVQERT 130
Query: 61 RLDHAHQAQMFKEAADQA-ENWLVTKE 86
+ AA A + +
Sbjct: 131 APAWEAVQAYGERAARGALQIAGLDVA 157
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 25.3 bits (56), Expect = 2.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 38 EPELTKLDELRRQLASSWEEQRTRL 62
E +LT+L +LR +L + +L
Sbjct: 61 EVDLTELVKLREELKPIAFARGIKL 85
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics,
PSI, S genomics of pathogenic protozoa consortium; HET:
12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB:
2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Length = 161
Score = 24.9 bits (54), Expect = 3.4
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 1 MINKVY---SILFSSQAEIDGRQETFKSLKEFGLKVSPPREPELTKLDELRRQ 50
+ K+Y +F+ + + LK+ + P + E T+ ++R++
Sbjct: 8 HMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQK 60
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 24.9 bits (55), Expect = 3.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 44 LDELRRQLASSWEEQRTRLDHAHQAQ 69
+ Q+ +W + RL A+Q +
Sbjct: 255 SHVTQSQVEKAWNLLQKRLPKAYQTR 280
>4ets_A Ferric uptake regulation protein; metal binding protein,
transcription factor; 2.10A {Campylobacter jejuni
subsp}
Length = 162
Score = 25.0 bits (55), Expect = 4.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 6 YSILFSSQAEIDGRQETFKS-LKEFGLKVSPPRE 38
Y+++ E D E FK L++ GLK + RE
Sbjct: 3 YAMMLIENVEYDVLLERFKKILRQGGLKYTKQRE 36
>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
carbohydrate; HET: AFO; 2.00A {Mycobacterium
tuberculosis}
Length = 406
Score = 24.9 bits (54), Expect = 4.9
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 31 LKVSPPREPELTKLDEL 47
+ ++PPR P + L +
Sbjct: 240 IALTPPRIPRVRTLQNV 256
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 24.5 bits (54), Expect = 6.0
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 24 KSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTR 61
++L ++ P + + RQL
Sbjct: 55 RALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEE 92
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; HET: SSA; 2.60A
{Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A*
2zr3_A
Length = 455
Score = 24.5 bits (54), Expect = 6.3
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 24 KSLKEFGLKVSPPREPELTKLDELRRQLASSWEEQRTR 61
L + G E+ KLD R R
Sbjct: 16 NDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHE 53
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 24.7 bits (53), Expect = 6.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 17 DGRQETFKSL-----KEFGLKVSPPREPELTKLDELRRQLASSWEEQRTRLD 63
+G +K ++FG++ E KL +L + WEE
Sbjct: 253 NGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENG 304
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 24.1 bits (53), Expect = 8.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 38 EPELTKLDELRRQLASSWEEQRTRL 62
E ++TKL R++ + E+ +L
Sbjct: 229 EADVTKLVAHRKKFKAIAAEKGIKL 253
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 24.3 bits (52), Expect = 9.0
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 44 LDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQAENWL 82
D+ R+ + + E + + + D A++ L
Sbjct: 34 RDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSIL 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.127 0.358
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,351,232
Number of extensions: 66005
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 68
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)