RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10627
         (92 letters)



>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 156

 Score = 27.0 bits (59), Expect = 0.27
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 41 LTKLDELRRQLASSWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEATEY 90
            ++    +       E+  +L+ ++  Q+FK  AD    W++ K     
Sbjct: 28 RQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILT 77


>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 124

 Score = 25.3 bits (55), Expect = 0.82
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 54 SWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEAT 88
          S  E R      H A+ F++ A   E W   KE  
Sbjct: 2  SSNEIRRLERLEHLAEKFRQKASTHETWAYGKEQI 36


>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
           (Peniophora sp. SG) [TaxId: 204723]}
          Length = 198

 Score = 25.7 bits (56), Expect = 0.82
 Identities = 4/39 (10%), Positives = 9/39 (23%)

Query: 54  SWEEQRTRLDHAHQAQMFKEAADQAENWLVTKEATEYRP 92
            +   RT  +           + +   +L         P
Sbjct: 151 RFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEP 189


>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken
          (Gallus gallus) [TaxId: 9031]}
          Length = 110

 Score = 25.0 bits (54), Expect = 1.3
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 65 AHQAQMFKEAADQAENWLVTKEAT 88
          A++ Q F       + WL   EA 
Sbjct: 1  ANKQQNFNTGIKDFDFWLSEVEAL 24


>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
           [TaxId: 10991]}
          Length = 268

 Score = 22.6 bits (48), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 59  RTRLDHAHQAQMFKEAADQAENWLVT 84
            ++L    Q ++F +A DQ  N L+T
Sbjct: 180 LSQLRACGQYEIFSDAMDQLTNSLIT 205


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 320,950
Number of extensions: 12533
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 29
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)