BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10628
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
pdb|3F31|B Chain B, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
Length = 149
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%)
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRD 157
IQ+R Q V+ R R KE ST RR++L +S + Q F R+ E+ WI +K QI +DE+Y+D
Sbjct: 17 IQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKD 76
Query: 158 PTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQL 217
PTNLQ K+QKH AFE+E+ AN + + G +IS GHFA+ I+TRL EL +W L
Sbjct: 77 PTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELL 136
Query: 218 QE 219
E
Sbjct: 137 LE 138
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 54 SGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRL 102
+ ++ L+KH+AFE ++A I L++ +++E H+ S I+ RL
Sbjct: 78 TNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRL 126
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
Length = 322
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 110/197 (55%), Gaps = 1/197 (0%)
Query: 41 EAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQ 100
EA L ++D G+ L+ V LL+KH+ E + A R+ DL A L+ +D+S ++
Sbjct: 23 EALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKD 82
Query: 101 RLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPT 159
+ + + R R+K + ARR +L ES ++ QF R+M + WI +K+ + + E Y RD T
Sbjct: 83 KRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLT 142
Query: 160 NLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQE 219
+Q+ +KH E+ELAA++ + V G+ L EI+ RL + W++L++
Sbjct: 143 GVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQ 202
Query: 220 SSALKRERLSDAYQTQR 236
+A + +RL ++ + Q+
Sbjct: 203 LAAARGQRLEESLEYQQ 219
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 1/190 (0%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
K+ ++++D G L+GV+ L +KHK E L A I + K L ++ IQ
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 187
Query: 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDP- 158
QRL + LK+ + AR +RL ES + QQF+ N+ E WI +K + A E Y D
Sbjct: 188 QRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTL 247
Query: 159 TNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQ 218
+Q ++KH AFE++ +K RV V A GE LI + I ++ L+ + L+
Sbjct: 248 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLE 307
Query: 219 ESSALKRERL 228
+++A ++ +L
Sbjct: 308 KAAAQRKAKL 317
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 38 ENKEAFLN-------NDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAE 90
E +EA++N ++D G++L+ ++ LL+KH+AFE R++D+ +DL+ +
Sbjct: 225 EEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 284
Query: 91 HHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIES 126
+++ I +++ + + L++ + R+ +L E+
Sbjct: 285 NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 320
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL 70
K + ++D G++L+ ++ LL+KH+AFE + ++ D + + + E L++K+ + +
Sbjct: 234 KMTLVASEDYGDTLAAIQGLLKKHEAFET-DFTVHKDRVNDVCANGEDLIKKNNHHVENI 292
Query: 71 EAQL----SRIDDLEKFA 84
A++ ++ DLEK A
Sbjct: 293 TAKMKGLKGKVSDLEKAA 310
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
Alpha Spectrin
Length = 216
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Query: 41 EAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQ 100
EA L ++D G+ L+ V LL+KH+ E + A R+ DL A L+ +D+S ++
Sbjct: 23 EALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKD 82
Query: 101 RLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPT 159
+ + + R R+K + ARR +L ES ++ QF R+M + WI +K+ + + E Y RD T
Sbjct: 83 KRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLT 142
Query: 160 NLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQE 219
+Q+ +KH E+ELAA++ + V G+ L EI+ RL + W++L++
Sbjct: 143 GVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQ 202
Query: 220 SSALKRERLSDAYQ 233
+A + +RL ++ +
Sbjct: 203 LAAARGQRLEESLE 216
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
K+ ++++D G L+GV+ L +KHK E L A I + K L ++ IQ
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 187
Query: 100 QRLQAVIARKDRLKETSTARRKRLIES 126
QRL + LK+ + AR +RL ES
Sbjct: 188 QRLAQFVDHWKELKQLAAARGQRLEES 214
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 1/192 (0%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
K+ ++++D G L+GV+ L +KHK E L A I + K L ++ IQ
Sbjct: 19 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQ 78
Query: 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDP- 158
QRL + LK+ + AR +RL ES + QQF+ N+ E WI +K + A E Y D
Sbjct: 79 QRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTL 138
Query: 159 TNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQ 218
+Q ++KH AFE++ +K RV V A GE LI + I ++ L+ + L+
Sbjct: 139 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLE 198
Query: 219 ESSALKRERLSD 230
+++A ++ +L +
Sbjct: 199 KAAAQRKAKLDE 210
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 129 MQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTA 187
+ QF R+M + WI +K+ + + E Y RD T +Q+ +KH E+ELAA++ + +V
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 188 EGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
G+ L EI+ RL + W++L++ +A + +RL ++ + Q+
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQ 110
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 37 FENKEAFLN-------NDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLA 89
E +EA++N ++D G++L+ ++ LL+KH+AFE R++D+ +DL+
Sbjct: 115 VEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 174
Query: 90 EHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIES 126
++++ I +++ + + L++ + R+ +L E+
Sbjct: 175 KNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL 70
K + ++D G++L+ ++ LL+KH+AFE + ++ D + + + E L++K+ + +
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFET-DFTVHKDRVNDVCANGEDLIKKNNHHVENI 183
Query: 71 EAQL----SRIDDLEKFA 84
A++ ++ DLEK A
Sbjct: 184 TAKMKGLKGKVSDLEKAA 201
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a.
pdb|3FB2|B Chain B, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a
Length = 218
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 42 AFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQR 101
+++D++ + ++G EALL +H+ ++A+ E+F + LLA HY S I+Q+
Sbjct: 34 GLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQK 93
Query: 102 LQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTN- 160
L + + L++ RR L + ++Q F R+ + W ++ E D +
Sbjct: 94 LDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXAAREAFLNTEDKGDSLDS 153
Query: 161 LQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQES 220
+++ I+KH F+ + + ++ A+ A + LI+ GH+A +I +R +E+ WR+L+
Sbjct: 154 VEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQ 213
Query: 221 SALKR 225
KR
Sbjct: 214 XIEKR 218
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
+EAFLN +D G+SL VEAL++KH+ F+KA+ Q +I L+ FA L+A HY I
Sbjct: 138 REAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDIS 197
Query: 100 QRLQAVIARKDRLKETSTARR 120
R V+ R RLK +R
Sbjct: 198 SRRNEVLDRWRRLKAQXIEKR 218
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 129 MQQFLRNMYEVGGWILQ-KQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTA 187
+Q+FL + ++ WI + + +DE +D T ++ +++H +E+ A A
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 188 EGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQ 235
G+ L++ GH+A+ EIK +LD L+ E L+++ +R L + Q
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQ 122
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha
Spectrin N Terminal Tetramerization Domain
Length = 156
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 80 LEKFAKDLLAEHHYDSSG---------IQQRLQAVIARKDRLKETSTARRKRLIESRQMQ 130
+E+F K+ + E SSG IQ+R Q V+ R KE R ++L +S +Q
Sbjct: 1 MEQFPKETVVE----SSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQ 56
Query: 131 QFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGE 190
F R+ ++G WI++K I D+SY DPTN+Q K QKH + E+E+ + + E
Sbjct: 57 VFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE 116
Query: 191 SLISGGHFAAAEIKTRLDEL 210
+ GH A E K ++EL
Sbjct: 117 ERFTMGHSAHEETKAHIEEL 136
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 161
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 80 LEKFAKDLLAEHHYDSSG---------IQQRLQAVIARKDRLKETSTARRKRLIESRQMQ 130
+E+F K+ + E SSG IQ+R Q V+ R KE R ++L +S +Q
Sbjct: 4 MEQFPKETVVE----SSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQ 59
Query: 131 QFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGE 190
F R+ ++G WI++K I D+SY DPTN+Q K QKH + E+E+ + + E
Sbjct: 60 VFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE 119
Query: 191 SLISGGHFAAAEIKTRLDEL 210
+ GH A E K ++EL
Sbjct: 120 ERFTMGHSAHEETKAHIEEL 139
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 122 RLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKS 180
+L ES ++ QF R+M + WI +K+ + + E Y RD T +Q+ +KH E+ELAA++
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 181 RVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERL 228
+ V G+ L EI+ RL + W++L++ +A + +RL
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
K+ ++++D G L+GV+ L +KHK E L A I + K L ++ IQ
Sbjct: 26 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 85
Query: 100 QRLQAVIARKDRLKETSTARRKRL 123
QRL + LK+ + AR +RL
Sbjct: 86 QRLAQFVDHWKELKQLAAARGQRL 109
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin
pdb|2SPC|B Chain B, Crystal Structure Of The Repetitive Segments Of Spectrin
Length = 107
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
+EAFLN DD + VEAL++KH+ F+KA+ +I L+ A L+A++HY S+ +
Sbjct: 22 REAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVD 81
Query: 100 QRLQAVIARKDRLKETSTARRKRL 123
++ + V+ R LKE +R RL
Sbjct: 82 EKRKQVLERWRHLKEGLIEKRSRL 105
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 129 MQQFLRNMYEVGGWILQKQQ-ICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTA 187
+Q ++R+ W+ ++ + AD+ N+++ I+KH F+ + ++ ++ A+
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQT 64
Query: 188 EGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSD 230
+ LI+ H+A+ + + ++ WR L+E KR RL D
Sbjct: 65 VADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Query: 47 DDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYD-SSGIQQRLQAV 105
+++G + VE L R H FE ++A +++ L++ A L A + D + IQ+R V
Sbjct: 138 EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEV 197
Query: 106 IARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQK-QQICADESYRDPTNLQSK 164
+ L + +RR RL+++ +F + ++ W+ +QI A E RD ++++
Sbjct: 198 LEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELL 257
Query: 165 IQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDEL 210
+ H ++E+ A G+SL++ H+A+ EIK +L +L
Sbjct: 258 MNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQL 303
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 38 ENKEAFLNNDDI-GESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSS 96
+ KEA L D +LS ++ALL+KH+AFE L A R++ + A++L +YDS
Sbjct: 387 DGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSP 446
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMY 137
+ R Q + + D L + RR+ L + ++ + + +Y
Sbjct: 447 SVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLY 487
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 142 WILQKQQICADESYRDPT--NLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFA 199
W K+ + + Y T +++ ++KH AFES+LAA++ RV + A + L ++
Sbjct: 385 WTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYD 444
Query: 200 AAEIKTRLDELELEWRQLQESSALKRERL 228
+ + R ++ +W L + +RE L
Sbjct: 445 SPSVNARCQKICDQWDNLGALTQKRREAL 473
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 36 AFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDS 95
A+ ++ L D SL+ V ALLRKH+AFE L A R++ + A++L ++D+
Sbjct: 147 AYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDA 206
Query: 96 SGIQQRLQAVIARKDRLKETSTARRKRL 123
+ R Q + + DRL + RR+ L
Sbjct: 207 VNVNDRCQKICDQWDRLGTLTQKRREAL 234
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats
From Alpha-Actinin
Length = 250
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 36 AFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDS 95
A+ ++ L D SL+ V ALLRKH+AFE L A R++ + A++L ++D+
Sbjct: 30 AYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDA 89
Query: 96 SGIQQRLQAVIARKDRLKETSTARRKRL 123
+ R Q + + DRL + RR+ L
Sbjct: 90 VNVNDRCQKICDQWDRLGTLTQKRREAL 117
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 326
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 4/201 (1%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
+E ++ +D+I + G +L++H ++A+E I L A+ LL+ H + I
Sbjct: 23 QELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQII 82
Query: 100 QRLQAVIARK-DRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQIC-ADESYRD 157
RLQ + + LK+ + R+++L + Q R ++ WI +K+ + + E +D
Sbjct: 83 -RLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQD 141
Query: 158 PTNLQSKIQKHAAFESELAA-NKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
++ K F E A + RV V A E LI GH AA I D L W
Sbjct: 142 FDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWAD 201
Query: 217 LQESSALKRERLSDAYQTQRH 237
L E + + L+ +Y R+
Sbjct: 202 LLELIDTRMQLLAASYDLHRY 222
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
Length = 326
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 4/201 (1%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
+E ++ +D+I + G +L++H ++A+E I L A+ LL+ H + I
Sbjct: 23 QELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQII 82
Query: 100 QRLQAVIARK-DRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQIC-ADESYRD 157
RLQ + + LK+ + R+++L + Q R ++ WI +K+ + + E +D
Sbjct: 83 -RLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQD 141
Query: 158 PTNLQSKIQKHAAFESELAA-NKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
++ K F E A + RV V A E LI GH AA I D L W
Sbjct: 142 FDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWAD 201
Query: 217 LQESSALKRERLSDAYQTQRH 237
L E + + L+ +Y R+
Sbjct: 202 LLELIDTRMQLLAASYDLHRY 222
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 185
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEK 82
+E +L + D G ++ VE L+++H+AFEK+ + R LEK
Sbjct: 129 QEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEA 42
+E +L + D G ++ VE L+++H+AFE A
Sbjct: 129 QEPYLASGDFGHTVDSVEKLIKRHEAFEKSTA 160
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 147 QQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTR 206
+QI E RD ++++ ++ H +E+ A GESL+ H A+ EI+ +
Sbjct: 25 RQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREK 84
Query: 207 LDELELEWRQLQESSALKRERL 228
L ++ +++ E + ERL
Sbjct: 85 LQQVMSRRKEMNEKWEARWERL 106
>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
Spectrin
Length = 214
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 130 QQFLRNMYEVGGWILQKQQICADESYRDPTNLQSK---IQKHAAFESELAANKSRVGAVT 186
Q FL+++ + W+ Q+ A E P +L +Q+HA + E+ ++ V
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDM--PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVK 60
Query: 187 AEGESLISG 195
GE +I G
Sbjct: 61 ESGEKVIQG 69
>pdb|3EDU|A Chain A, Crystal Structure Of The Ankyrin-Binding Domain Of Human
Erythroid Spectrin
Length = 218
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 47 DDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSS-GIQQRLQAV 105
+D+G S E+ R H AFE+ L ++ + A L + + + IQ + Q V
Sbjct: 133 EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEV 192
Query: 106 IARKDRLKETSTARRKRLIES 126
A L + RR +L+++
Sbjct: 193 SAAWQALLDACAGRRTQLVDT 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,301,106
Number of Sequences: 62578
Number of extensions: 222566
Number of successful extensions: 638
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 83
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)