Query psy10628
Match_columns 238
No_of_seqs 115 out of 1166
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:22:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 1.3E-28 2.9E-33 232.2 29.1 233 2-234 1141-1377(2473)
2 KOG0517|consensus 100.0 2.2E-28 4.7E-33 230.8 26.7 210 28-237 528-741 (2473)
3 cd00176 SPEC Spectrin repeats, 100.0 1.3E-25 2.9E-30 179.2 28.4 206 26-231 5-212 (213)
4 KOG0040|consensus 99.9 4.3E-25 9.3E-30 205.7 23.6 215 23-237 151-366 (2399)
5 KOG0040|consensus 99.9 2.5E-21 5.4E-26 180.9 23.8 227 8-237 231-472 (2399)
6 smart00150 SPEC Spectrin repea 99.7 1.2E-15 2.6E-20 107.6 13.1 99 26-124 3-101 (101)
7 smart00150 SPEC Spectrin repea 99.7 1.4E-15 3E-20 107.3 12.3 99 131-229 2-101 (101)
8 PF00435 Spectrin: Spectrin re 99.6 8.5E-15 1.8E-19 103.8 13.9 103 128-230 2-105 (105)
9 KOG4286|consensus 99.6 4.9E-13 1.1E-17 119.6 26.0 215 20-234 94-337 (966)
10 PF00435 Spectrin: Spectrin re 99.6 2.4E-14 5.2E-19 101.5 14.3 100 26-125 6-105 (105)
11 cd00176 SPEC Spectrin repeats, 99.5 2.5E-12 5.5E-17 102.3 14.4 109 129-237 2-111 (213)
12 KOG4286|consensus 99.1 4.9E-09 1.1E-13 94.5 17.4 197 29-236 9-230 (966)
13 KOG4240|consensus 98.0 0.00081 1.8E-08 64.1 18.8 146 91-236 239-387 (1025)
14 KOG0035|consensus 96.1 0.0031 6.8E-08 59.6 2.1 202 30-234 403-622 (890)
15 KOG4240|consensus 95.8 0.83 1.8E-05 44.4 16.4 118 26-146 280-399 (1025)
16 PF12128 DUF3584: Protein of u 95.6 2.4 5.1E-05 43.0 20.0 95 31-125 226-320 (1201)
17 KOG0994|consensus 86.4 39 0.00085 34.0 15.4 87 103-190 1163-1256(1758)
18 COG5185 HEC1 Protein involved 84.7 29 0.00064 31.2 13.7 131 3-143 293-426 (622)
19 TIGR03545 conserved hypothetic 80.9 48 0.001 30.8 13.7 76 100-186 164-239 (555)
20 KOG0516|consensus 80.1 70 0.0015 32.2 16.8 137 100-237 172-309 (1047)
21 PRK04863 mukB cell division pr 71.8 1.4E+02 0.003 31.5 24.1 125 94-223 986-1127(1486)
22 PF12325 TMF_TATA_bd: TATA ele 69.6 40 0.00087 24.4 8.2 75 156-230 13-100 (120)
23 PF06160 EzrA: Septation ring 68.5 1E+02 0.0022 28.7 19.9 56 68-127 108-163 (560)
24 PF12325 TMF_TATA_bd: TATA ele 68.2 43 0.00094 24.3 11.6 76 49-124 11-99 (120)
25 PF03993 DUF349: Domain of Unk 67.4 31 0.00066 22.3 6.1 46 171-218 25-70 (77)
26 PF06008 Laminin_I: Laminin Do 60.0 98 0.0021 25.5 20.1 58 55-112 81-139 (264)
27 smart00787 Spc7 Spc7 kinetocho 58.3 1.2E+02 0.0026 26.0 15.0 78 97-174 208-286 (312)
28 KOG2150|consensus 57.8 1.4E+02 0.003 27.7 9.9 121 97-224 16-148 (575)
29 PF11691 DUF3288: Protein of u 57.4 47 0.001 22.7 5.4 63 173-235 16-79 (90)
30 PRK04863 mukB cell division pr 53.9 3E+02 0.0064 29.2 21.1 23 196-218 487-509 (1486)
31 PF04065 Not3: Not1 N-terminal 53.6 52 0.0011 26.8 6.2 89 98-186 17-108 (233)
32 KOG0035|consensus 52.4 4.3 9.4E-05 39.2 -0.2 104 129-232 396-501 (890)
33 PF14817 HAUS5: HAUS augmin-li 51.0 2.2E+02 0.0049 27.0 21.1 191 7-221 196-402 (632)
34 PRK11546 zraP zinc resistance 47.1 1.2E+02 0.0026 22.7 11.1 61 52-112 45-105 (143)
35 PF08580 KAR9: Yeast cortical 44.8 2.9E+02 0.0063 26.5 23.0 119 94-222 236-362 (683)
36 PF08657 DASH_Spc34: DASH comp 43.2 1.3E+02 0.0027 25.1 7.0 52 178-231 155-206 (259)
37 KOG0994|consensus 43.2 3.9E+02 0.0085 27.5 23.1 31 97-127 1546-1576(1758)
38 COG0497 RecN ATPase involved i 42.9 2.8E+02 0.0061 25.8 23.5 70 157-226 295-370 (557)
39 PF04065 Not3: Not1 N-terminal 42.1 1.9E+02 0.0041 23.6 10.7 77 4-81 18-108 (233)
40 TIGR02449 conserved hypothetic 41.1 95 0.0021 19.8 5.5 33 56-88 9-41 (65)
41 PF12178 INCENP_N: Chromosome 40.0 71 0.0015 18.1 3.5 34 5-42 2-35 (38)
42 PF03993 DUF349: Domain of Unk 39.3 1E+02 0.0022 19.7 6.4 37 75-113 34-70 (77)
43 PF12128 DUF3584: Protein of u 39.1 4.5E+02 0.0099 27.1 22.9 133 97-233 711-858 (1201)
44 PF13514 AAA_27: AAA domain 38.1 4.5E+02 0.0098 26.8 25.3 212 3-233 96-317 (1111)
45 PF05218 DUF713: Protein of un 37.4 2E+02 0.0043 22.5 11.1 39 111-149 5-44 (182)
46 KOG3958|consensus 36.7 2.7E+02 0.0058 23.7 18.8 124 29-153 192-333 (371)
47 PF12252 SidE: Dot/Icm substra 36.6 4.8E+02 0.01 26.6 18.1 93 28-122 1134-1226(1439)
48 PF12998 ING: Inhibitor of gro 35.4 1.4E+02 0.0031 20.3 10.5 74 158-234 14-90 (105)
49 PF11616 EZH2_WD-Binding: WD r 34.7 71 0.0015 16.9 2.7 19 200-218 8-26 (30)
50 PF04129 Vps52: Vps52 / Sac2 f 32.9 3.9E+02 0.0085 24.5 17.7 149 32-182 25-187 (508)
51 PF05400 FliT: Flagellar prote 32.3 1.4E+02 0.0031 19.2 6.1 38 198-235 37-74 (84)
52 PF10498 IFT57: Intra-flagella 31.3 3.6E+02 0.0078 23.6 13.6 14 32-45 192-205 (359)
53 PRK11546 zraP zinc resistance 30.7 2.3E+02 0.005 21.2 10.7 69 157-229 45-113 (143)
54 PF11401 Tetrabrachion: Tetrab 30.4 1.1E+02 0.0024 17.4 3.5 23 209-231 16-38 (49)
55 PRK14161 heat shock protein Gr 30.0 2.7E+02 0.0058 21.7 12.3 74 79-152 12-88 (178)
56 PF14643 DUF4455: Domain of un 29.4 4.4E+02 0.0094 23.9 20.6 207 25-233 8-277 (473)
57 PF03962 Mnd1: Mnd1 family; I 29.0 2.8E+02 0.0061 21.7 12.9 95 97-191 66-167 (188)
58 PF08687 ASD2: Apx/Shroom doma 28.9 3.4E+02 0.0075 22.6 8.9 53 20-72 142-198 (264)
59 PF08946 Osmo_CC: Osmosensory 27.5 1.4E+02 0.003 17.6 3.4 20 64-83 15-34 (46)
60 PF13675 PilJ: Type IV pili me 26.8 2.1E+02 0.0047 19.6 5.4 49 170-223 47-95 (112)
61 PF13801 Metal_resist: Heavy-m 25.4 2.3E+02 0.005 19.4 10.3 72 157-228 43-114 (125)
62 PF10805 DUF2730: Protein of u 25.0 2.5E+02 0.0054 19.7 10.0 55 32-89 46-100 (106)
63 PF13949 ALIX_LYPXL_bnd: ALIX 24.8 4E+02 0.0087 22.0 19.8 128 99-236 140-272 (296)
64 KOG0860|consensus 24.7 2.7E+02 0.0059 20.0 7.6 42 169-218 32-77 (116)
65 PF05531 NPV_P10: Nucleopolyhe 23.3 2.3E+02 0.005 18.7 8.3 57 171-228 9-65 (75)
66 PF04849 HAP1_N: HAP1 N-termin 22.9 4.8E+02 0.01 22.3 14.6 29 158-186 159-187 (306)
67 PF07106 TBPIP: Tat binding pr 22.8 3.4E+02 0.0074 20.5 9.1 58 160-227 110-167 (169)
68 PF05010 TACC: Transforming ac 22.3 4.1E+02 0.0089 21.3 19.9 31 54-84 69-99 (207)
69 TIGR00634 recN DNA repair prot 21.6 6.6E+02 0.014 23.3 26.3 71 156-226 298-374 (563)
70 PF07304 SRA1: Steroid recepto 21.0 2.2E+02 0.0047 21.6 4.5 34 201-234 68-103 (157)
71 PF07304 SRA1: Steroid recepto 20.7 3.8E+02 0.0083 20.3 6.0 37 96-132 68-106 (157)
72 PF11083 Streptin-Immun: Lanti 20.7 3.1E+02 0.0066 19.1 8.5 28 67-94 5-32 (99)
73 PF04912 Dynamitin: Dynamitin 20.2 6E+02 0.013 22.3 17.4 62 29-90 210-283 (388)
74 PF08066 PMC2NT: PMC2NT (NUC01 20.1 2.9E+02 0.0063 18.6 7.0 71 164-236 18-89 (91)
No 1
>KOG0517|consensus
Probab=99.97 E-value=1.3e-28 Score=232.24 Aligned_cols=233 Identities=32% Similarity=0.518 Sum_probs=219.9
Q ss_pred CchhhHHHHHHHHHchHH-HHhHhhh---HHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhH
Q psy10628 2 NGDDGLSSLKEAFLNNDD-IGESLSG---VEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRI 77 (238)
Q Consensus 2 ~~~~~~~~l~~~w~~r~~-l~~~l~~---~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v 77 (238)
+++.||..|..-|..|++ |.+.+.+ ..+..+.+.-+.+.|.+|+..++|.+++.++++|++|.+|...+.+...++
T Consensus 1141 ~L~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki 1220 (2473)
T KOG0517|consen 1141 ALGTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKI 1220 (2473)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467899999999999987 5554433 235559999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCCCC
Q psy10628 78 DDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRD 157 (238)
Q Consensus 78 ~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d 157 (238)
+.+...|+.|+..+|++++.|+++...|..+|..+...+.+|.++|.+++.++.|.++|+++..||.+|..+..+.++.+
T Consensus 1221 ~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~ 1300 (2473)
T KOG0517|consen 1221 EALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRD 1300 (2473)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10628 158 PTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQT 234 (238)
Q Consensus 158 ~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~ 234 (238)
+.+|...+.+|++|++||.++++.++.|...|+.|+..+|+..+.|+.++.+|+.+|..|...+.++...|.+|-+.
T Consensus 1301 ~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q 1377 (2473)
T KOG0517|consen 1301 ARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQ 1377 (2473)
T ss_pred hhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0517|consensus
Probab=99.97 E-value=2.2e-28 Score=230.78 Aligned_cols=210 Identities=30% Similarity=0.448 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhc---CCCCchHHHHHHHH
Q psy10628 28 EALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAE---HHYDSSGIQQRLQA 104 (238)
Q Consensus 28 ~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~---~~~~~~~i~~~l~~ 104 (238)
++|..+.+|+.+++..+.+.++|.++-+|+.+|++|..++.+|.++..+|..+++.+.++... +++++..|..++..
T Consensus 528 qem~~~~d~meElk~~l~S~d~GkHL~gVedLLQkH~LlEadIn~~gerv~~~~a~a~~f~~~~~~~~cdp~vi~~R~~~ 607 (2473)
T KOG0517|consen 528 QEMLYTSDWMEELKQQLLSRDVGKHLLGVEDLLQKHDLLEADINAQGERVKALNAQALRFDSPKEYKPCDPQVIQERVAH 607 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999983 45799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCC-CChhhHHHHHHHHHHHHHHHHhhhhhHH
Q psy10628 105 VIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVG 183 (238)
Q Consensus 105 L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~-~d~~~i~~~l~kh~~~~~ei~~~~~~v~ 183 (238)
|...|..|+.++..|+.+|+.+..+++|+.++++.++||.+++..+++..+ +|+..|..++.+|++|+.||..+.+...
T Consensus 608 le~~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~ 687 (2473)
T KOG0517|consen 608 LEQCYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAHLK 687 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999999999999999999999999999999999987665 7999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy10628 184 AVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237 (238)
Q Consensus 184 ~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q~ 237 (238)
+++..|+.|+..+||.++.|..++..+..+|+.|..++..|+.+|++|..+|||
T Consensus 688 ~~~~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~Qf 741 (2473)
T KOG0517|consen 688 QMIREGEELVAEGHPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQF 741 (2473)
T ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998
No 3
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.96 E-value=1.3e-25 Score=179.24 Aligned_cols=206 Identities=32% Similarity=0.536 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHH
Q psy10628 26 GVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAV 105 (238)
Q Consensus 26 ~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L 105 (238)
|...+..+..||.+++..|.+..+++++..++.++++|+.|+.+|..+...++.|+..|+.|+...++++..|...++.|
T Consensus 5 f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l 84 (213)
T cd00176 5 FLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEEL 84 (213)
T ss_pred HHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 44445599999999999999998877999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCC-CChhhHHHHHHHHHHHHHHHHhhhhhHHh
Q psy10628 106 IARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGA 184 (238)
Q Consensus 106 ~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~-~d~~~i~~~l~kh~~~~~ei~~~~~~v~~ 184 (238)
+.+|+.|+..+..|...|+.++....|+.++..+..||.+++..+...++ .++..++.++..|+.|..++..+.+.+..
T Consensus 85 ~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 164 (213)
T cd00176 85 NQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKS 164 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999999999998888888877799999999998765543 57999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 185 VTAEGESLISGGHFAA-AEIKTRLDELELEWRQLQESSALKRERLSDA 231 (238)
Q Consensus 185 l~~~g~~L~~~~~~~~-~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a 231 (238)
+...|..|+..+++.. ..|...++.+..+|..|...+..|...|+.+
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 165 LNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999877765 8899999999999999999999999999875
No 4
>KOG0040|consensus
Probab=99.94 E-value=4.3e-25 Score=205.66 Aligned_cols=215 Identities=27% Similarity=0.437 Sum_probs=206.1
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHH
Q psy10628 23 SLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRL 102 (238)
Q Consensus 23 ~l~~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l 102 (238)
+++|...-.++..||.++|..+.+.++|.|++.|+.+.++++.|+.++.++.-+|..|++.|..|+..+||+.+.|+.+.
T Consensus 151 ~~q~~~~c~~i~~wi~dke~~~t~~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~e~h~e~~~i~~k~ 230 (2399)
T KOG0040|consen 151 LVQYLRECEDILEWIGDKEAIVTSEELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVNQYADKLVEEGHPELDLIQKKQ 230 (2399)
T ss_pred HHHHHHHHHHHHHHhccchheeeHHHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHcCCCchHHHHHhH
Confidence 44566666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCC-CChhhHHHHHHHHHHHHHHHHhhhhh
Q psy10628 103 QAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSR 181 (238)
Q Consensus 103 ~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~-~d~~~i~~~l~kh~~~~~ei~~~~~~ 181 (238)
+++|..|++|..++..|+..|-.+..++.|.+++++...||.+++.++++..| .|+..+++++++|+.++.++.+..+.
T Consensus 231 ~evn~aw~rl~~la~~rq~~l~~a~~~qrf~rd~~et~~wi~ek~~~l~sddygrdl~~~q~l~~~h~g~erdla~l~~k 310 (2399)
T KOG0040|consen 231 DEVNAAWQRLKGLALQRQEKLFGAAEVQRFNRDVDETIAWIKEKEPVLSSDDYGRDLASVQALQRKHEGLERDLAALEDK 310 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHhcccHHHHHHHHhhccccccccccchhHHHHHHHHHhccchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887 69999999999999999999999999
Q ss_pred HHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy10628 182 VGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237 (238)
Q Consensus 182 v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q~ 237 (238)
|..|...|++|....|..++.|+.+-+++...|+.+..++..|...|+.++.++-|
T Consensus 311 v~~l~~~a~~l~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~hrf 366 (2399)
T KOG0040|consen 311 VKELCAEAEKLTLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWLHRF 366 (2399)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887654
No 5
>KOG0040|consensus
Probab=99.89 E-value=2.5e-21 Score=180.93 Aligned_cols=227 Identities=22% Similarity=0.384 Sum_probs=210.9
Q ss_pred HHHHHHHHchHH--------------HHhHhhhHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy10628 8 SSLKEAFLNNDD--------------IGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQ 73 (238)
Q Consensus 8 ~~l~~~w~~r~~--------------l~~~l~~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~ 73 (238)
.+++.+|++... +++|-.+.+ +-.+||.+++..|++.++|.|+..|++++.+|+.+++++.+.
T Consensus 231 ~evn~aw~rl~~la~~rq~~l~~a~~~qrf~rd~~---et~~wi~ek~~~l~sddygrdl~~~q~l~~~h~g~erdla~l 307 (2399)
T KOG0040|consen 231 DEVNAAWQRLKGLALQRQEKLFGAAEVQRFNRDVD---ETIAWIKEKEPVLSSDDYGRDLASVQALQRKHEGLERDLAAL 307 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHhcccHH---HHHHHHhhccccccccccchhHHHHHHHHHhccchhhhHHHH
Confidence 568888887432 344555555 999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCC
Q psy10628 74 LSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADE 153 (238)
Q Consensus 74 ~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~ 153 (238)
.+.|..+.+.|++|....|.+++.|+.+-+.+...|..+..++..|...|+.++.++.|..++..+..|+.++..++...
T Consensus 308 ~~kv~~l~~~a~~l~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~hrf~ad~rdL~~w~~~~~aaInad 387 (2399)
T KOG0040|consen 308 EDKVKELCAEAEKLTLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWLHRFLADFRDLSSWINEMKAAINAD 387 (2399)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred C-CCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 154 S-YRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAY 232 (238)
Q Consensus 154 ~-~~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~ 232 (238)
. ..|....+++|+.|..|+.+|+++.+..+.-...|+.|+..+++.++.++.++..+..-|..|.+++..|+...++++
T Consensus 388 el~~dvag~e~lL~~hqEhK~eIds~~dSf~~~~~~gq~l~~~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~yeqcm 467 (2399)
T KOG0040|consen 388 ELAKDVAGAEALLDRHQEHKGEIDAREDSFKSADESGQKLVEAGHYASDEVREKLEILDNEKSALLELWEERRIQYEQCM 467 (2399)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhccccHHHHHccccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4 489999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhccC
Q psy10628 233 QTQRH 237 (238)
Q Consensus 233 ~~~q~ 237 (238)
.+.-|
T Consensus 468 d~~lf 472 (2399)
T KOG0040|consen 468 DLQLF 472 (2399)
T ss_pred HHHHH
Confidence 76543
No 6
>smart00150 SPEC Spectrin repeats.
Probab=99.68 E-value=1.2e-15 Score=107.59 Aligned_cols=99 Identities=35% Similarity=0.537 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHH
Q psy10628 26 GVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAV 105 (238)
Q Consensus 26 ~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L 105 (238)
|...+..+.+||.+++..+.+.++|.|+..++.++++|+.|+.+|..+++.|+.|+..|+.|+..++++++.|..+++.|
T Consensus 3 f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l 82 (101)
T smart00150 3 FLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEEL 82 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 44455699999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10628 106 IARKDRLKETSTARRKRLI 124 (238)
Q Consensus 106 ~~rw~~L~~~~~~r~~~L~ 124 (238)
+.+|+.|+..+.+|+..|+
T Consensus 83 ~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 83 NERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998874
No 7
>smart00150 SPEC Spectrin repeats.
Probab=99.67 E-value=1.4e-15 Score=107.26 Aligned_cols=99 Identities=38% Similarity=0.664 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhCCCC-CChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHH
Q psy10628 131 QFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDE 209 (238)
Q Consensus 131 ~f~~~~~~~~~WL~~~~~~l~~~~~-~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~ 209 (238)
.|..++.++..||.+++..+...++ +|+..++.++++|+.|+.+|..+.+.|+.|+..|+.|+..+|++++.|..+++.
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5999999999999999988765544 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10628 210 LELEWRQLQESSALKRERLS 229 (238)
Q Consensus 210 l~~~W~~L~~~~~~r~~~L~ 229 (238)
|+.+|..|+..+.+|...|+
T Consensus 82 l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 82 LNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998874
No 8
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.65 E-value=8.5e-15 Score=103.81 Aligned_cols=103 Identities=24% Similarity=0.482 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHH
Q psy10628 128 QMQQFLRNMYEVGGWILQKQQICADES-YRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTR 206 (238)
Q Consensus 128 ~l~~f~~~~~~~~~WL~~~~~~l~~~~-~~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~ 206 (238)
.++.|..+++++..||..++..+...+ +.|+..+..++.+|+.|+.+|..+.+.++.|...|+.|+..+|++++.|+.+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 467899999999999999999885543 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 207 LDELELEWRQLQESSALKRERLSD 230 (238)
Q Consensus 207 ~~~l~~~W~~L~~~~~~r~~~L~~ 230 (238)
+..|+.+|..|+..+.+|...|++
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999975
No 9
>KOG4286|consensus
Probab=99.63 E-value=4.9e-13 Score=119.57 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=182.9
Q ss_pred HHhHhhhHH----HHHHHHHHHHHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCC-
Q psy10628 20 IGESLSGVE----ALLRKHKAFENKEAFLNND-DIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHY- 93 (238)
Q Consensus 20 l~~~l~~~~----~l~~l~~WL~~~e~~l~~~-~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~- 93 (238)
|+.+-+.|. -++++.+|+.-+...++.. .+|+|+..|+.+-.-|++|+++|+.....|-++...|+.++...+.
T Consensus 94 lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e 173 (966)
T KOG4286|consen 94 LEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLE 173 (966)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCc
Confidence 555555554 3579999999998877765 5599999999999999999999999999999999999999875321
Q ss_pred ---------C----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhhC-
Q psy10628 94 ---------D----------SSGIQQRLQAVIARKDRLKETSTARRKRLIESR-QMQQFLRNMYEVGGWILQKQQICAD- 152 (238)
Q Consensus 94 ---------~----------~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~-~l~~f~~~~~~~~~WL~~~~~~l~~- 152 (238)
+ +.-+......++..|..|...+.++.+..+.++ .++...+.++++..=|...+.....
T Consensus 174 ~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w 253 (966)
T KOG4286|consen 174 GLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSW 253 (966)
T ss_pred chhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcc
Confidence 1 123556678899999999999999999999999 7889999999999999999987644
Q ss_pred CCCCC--hhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 153 ESYRD--PTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSD 230 (238)
Q Consensus 153 ~~~~d--~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~ 230 (238)
.+++| ++.++.-+.+.++|..||...+..|+.|+..+.+|....-.-.......++.++.||..|...+..|...|.+
T Consensus 254 ~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlrn 333 (966)
T KOG4286|consen 254 QPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVSVPDRLTQLRN 333 (966)
T ss_pred ccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577 4889999999999999999999999999999999987544445667788999999999999999999999998
Q ss_pred HHHh
Q psy10628 231 AYQT 234 (238)
Q Consensus 231 a~~~ 234 (238)
|..-
T Consensus 334 a~~d 337 (966)
T KOG4286|consen 334 AHRD 337 (966)
T ss_pred HHHh
Confidence 8654
No 10
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.62 E-value=2.4e-14 Score=101.45 Aligned_cols=100 Identities=27% Similarity=0.368 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHH
Q psy10628 26 GVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAV 105 (238)
Q Consensus 26 ~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L 105 (238)
|...+..+..||..++..+...++|.++..++.++++|+.|+.+|..+...++.|+..|..|+..+|++++.|+.++..|
T Consensus 6 f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l 85 (105)
T PF00435_consen 6 FQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEEL 85 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 44445599999999999998888899999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10628 106 IARKDRLKETSTARRKRLIE 125 (238)
Q Consensus 106 ~~rw~~L~~~~~~r~~~L~~ 125 (238)
+.+|+.|+..+..|+..|++
T Consensus 86 ~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 86 NQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999974
No 11
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.46 E-value=2.5e-12 Score=102.30 Aligned_cols=109 Identities=38% Similarity=0.634 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHH
Q psy10628 129 MQQFLRNMYEVGGWILQKQQICADES-YRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRL 207 (238)
Q Consensus 129 l~~f~~~~~~~~~WL~~~~~~l~~~~-~~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~ 207 (238)
++.|..++..+..||.+++..+.+.. +.|+..++.++.+|+.|..++..+.+.++.|+..|+.|+..+++....|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 46899999999999999999886654 36899999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy10628 208 DELELEWRQLQESSALKRERLSDAYQTQRH 237 (238)
Q Consensus 208 ~~l~~~W~~L~~~~~~r~~~L~~a~~~~q~ 237 (238)
+.|+.+|..|+..+..|...|+.++..+++
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~ 111 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQF 111 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999886653
No 12
>KOG4286|consensus
Probab=99.13 E-value=4.9e-09 Score=94.46 Aligned_cols=197 Identities=17% Similarity=0.241 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhc--CCCCchHHHHHHHHHH
Q psy10628 29 ALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAE--HHYDSSGIQQRLQAVI 106 (238)
Q Consensus 29 ~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~--~~~~~~~i~~~l~~L~ 106 (238)
++..+..|+-. ........-.|........+..+.++.+|.++ +|-..+..|+.. +..++-.+. -++
T Consensus 9 ~l~~f~~w~l~--d~~~~~~~l~dt~~~~~~~~~~~~~~~e~~a~-----~v~~~~~kl~~~l~~~~~~~~l~----~mn 77 (966)
T KOG4286|consen 9 DLEKFLAWLLQ--DATRKERLLEDSKGVKELMKQWQDLQGEIEAH-----NLDENSQKILRSLEGSDDAVLLQ----LMN 77 (966)
T ss_pred hHHHHHHHHHh--hhhhhHhhhhcccccHHHHHHHhccccccccc-----cCchHHHHHHHHhcCCccchHHH----HHH
Confidence 45589999811 11111111233345666777788888888873 555677777765 233443343 389
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhhC--CCCCChhhHHHHHHHHHHHHHHHHhhhhhHH
Q psy10628 107 ARKDRLKETSTARRKRLIESR-QMQQFLRNMYEVGGWILQKQQICAD--ESYRDPTNLQSKIQKHAAFESELAANKSRVG 183 (238)
Q Consensus 107 ~rw~~L~~~~~~r~~~L~~~~-~l~~f~~~~~~~~~WL~~~~~~l~~--~~~~d~~~i~~~l~kh~~~~~ei~~~~~~v~ 183 (238)
.+|..|.+.+.+-+.+|+.+. +...+.-...++..|+..|...++. +.+||...|+.+-.-|++|+.||+...+.|-
T Consensus 78 ~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~ 157 (966)
T KOG4286|consen 78 FKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIM 157 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 999999999999999999988 4556778899999999999987755 3458999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCC--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10628 184 AVTAEGESLISGGHFA--------------------AAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236 (238)
Q Consensus 184 ~l~~~g~~L~~~~~~~--------------------~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q 236 (238)
...+.|+..+...|.. +--+......++..|+.|...+....+.++.|+..+|
T Consensus 158 s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~ 230 (966)
T KOG4286|consen 158 STLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQ 230 (966)
T ss_pred HHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 9999999998754321 1124455688899999999999999999998887654
No 13
>KOG4240|consensus
Probab=98.02 E-value=0.00081 Score=64.12 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=124.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCC-CC-CChhhHHHHHHHH
Q psy10628 91 HHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADE-SY-RDPTNLQSKIQKH 168 (238)
Q Consensus 91 ~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~-~~-~d~~~i~~~l~kh 168 (238)
..+-.+.|+..++.+..+-..+.-....+..++..+.++..+..+..++..|+.+...++... .. .+......+...|
T Consensus 239 ~~~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~ 318 (1025)
T KOG4240|consen 239 DRDMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQLAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREH 318 (1025)
T ss_pred chHHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhH
Confidence 345667899999999999999999999999999999999999999999999999999887543 22 5567777788888
Q ss_pred HHHHHHHHh-hhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10628 169 AAFESELAA-NKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236 (238)
Q Consensus 169 ~~~~~ei~~-~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q 236 (238)
..|..-+.. ....-.++...+..+....+++...+..++..+.++|..+...+++|...+.++..+|.
T Consensus 319 ~~f~d~~e~k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~~~~ 387 (1025)
T KOG4240|consen 319 RQFQDAQEVKTLLSQLQVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVAFYK 387 (1025)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888876665 33344556667777888899999999999999999999999999999999999988874
No 14
>KOG0035|consensus
Probab=96.11 E-value=0.0031 Score=59.55 Aligned_cols=202 Identities=18% Similarity=0.193 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHHH
Q psy10628 30 LLRKHKAFENKEAFLNNDDIGE-SLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIAR 108 (238)
Q Consensus 30 l~~l~~WL~~~e~~l~~~~~~~-~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~r 108 (238)
...-+.|....+..+...+++. -++.++...+.|..|+.++.++..++..+.+.+..|.....++...+...+..++..
T Consensus 403 ~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~~~q~i~dq 482 (890)
T KOG0035|consen 403 ASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAADCQHICDQ 482 (890)
T ss_pred CchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhhhhhhcccc
Confidence 3467789888899998888865 578899999999999999999999999999999999998888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHHHHH---H
Q psy10628 109 KDRLKETSTARRKRLIESRQ--------MQQFLRNMYEVGGWILQKQQICADES-YRDPTNLQSKIQKHAAFESEL---A 176 (238)
Q Consensus 109 w~~L~~~~~~r~~~L~~~~~--------l~~f~~~~~~~~~WL~~~~~~l~~~~-~~d~~~i~~~l~kh~~~~~ei---~ 176 (238)
|..+-.++..|+-.|+.... ...|...+..+..|+.....-+.+.. .-....++.+...|..|..-+ .
T Consensus 483 ~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~~~l~~~~~d~~d~~~~~~ire~~~~~~a~~~~k~t~p~a~ 562 (890)
T KOG0035|consen 483 WDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFNNWLKGVQEDLQDNEISYSIREIQRLRAADLQFKSTLPEAD 562 (890)
T ss_pred ccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhccchHhhhccchhhhhhcccCcccc
Confidence 99999998888888886543 23677888899999999554443322 245667777777777776544 3
Q ss_pred hhhhhHHhHHHHHHHhhcCCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10628 177 ANKSRVGAVTAEGESLISGGHF-----AAAEIKTRLDELELEWRQLQESSALKRERLSDAYQT 234 (238)
Q Consensus 177 ~~~~~v~~l~~~g~~L~~~~~~-----~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~ 234 (238)
.+...+......++.......+ ..+.|.. .+...|..+.....++...+.....+
T Consensus 563 ~~~~~~~~e~~e~~~~~~~~~~~~~~~~np~~~~---s~~~~~d~v~~~~~~~~~~~~~~~~~ 622 (890)
T KOG0035|consen 563 GEGQKISDEEKEREKVSEQLNPKIEPDTNPYTTL---SIYGKWDAVLSSVPDRDSIEANVHAR 622 (890)
T ss_pred chhhhhhhhhhHHHHhhhhcCccccccccccccc---ccccchhhhcccccccchhhHHHHHh
Confidence 4555555555556655543221 1111111 16778988888888887766655443
No 15
>KOG4240|consensus
Probab=95.75 E-value=0.83 Score=44.41 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHHHHHH-hHhhHHHHHHHHHhhHhcCCCCchHHHHHHH
Q psy10628 26 GVEALLRKHKAFENKEAFLNNDD-IGESLSGVEALLRKHKAFEKALEA-QLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQ 103 (238)
Q Consensus 26 ~~~~l~~l~~WL~~~e~~l~~~~-~~~~l~~ve~~l~~h~~l~~~i~~-~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~ 103 (238)
...+.+++..|+.+-..++.... .++++.....+..+|..|...+.. ....-..+..++..++...+++...+..++.
T Consensus 280 l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f~d~~e~k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le 359 (1025)
T KOG4240|consen 280 LLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQFQDAQEVKTLLSQLQVQQKAFDLLQNKHQNRDESLEKLE 359 (1025)
T ss_pred HHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHhHH
Confidence 33456899999999999998764 478888899999999999988887 3344446677788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10628 104 AVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQK 146 (238)
Q Consensus 104 ~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~ 146 (238)
.++.+|..+...++.|-+.+..+. .|+....++..=|.+.
T Consensus 360 ~~~t~~qql~~~~e~r~~~vaa~~---~~~~t~e~v~~iLe~l 399 (1025)
T KOG4240|consen 360 TLQTKWQQLMTAMEDRLKLVAAAV---AFYKTSEQVEPILEDL 399 (1025)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHhc
Confidence 999999999999999999988764 5555555555555543
No 16
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.62 E-value=2.4 Score=42.99 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHH
Q psy10628 31 LRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKD 110 (238)
Q Consensus 31 ~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~ 110 (238)
..+..|+.++.....-...-+.+..+......+..+...+......+.............-......+...+..+...|.
T Consensus 226 ~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (1201)
T PF12128_consen 226 NDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIK 305 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777776543222223345555555666666666666555555544444444433222233344555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q psy10628 111 RLKETSTARRKRLIE 125 (238)
Q Consensus 111 ~L~~~~~~r~~~L~~ 125 (238)
.+......+...+..
T Consensus 306 e~~~~~~~~~~~~~~ 320 (1201)
T PF12128_consen 306 ELRDELNKELSALNA 320 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 17
>KOG0994|consensus
Probab=86.38 E-value=39 Score=34.02 Aligned_cols=87 Identities=10% Similarity=0.144 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHH
Q psy10628 103 QAVIARKDRLKETSTARRKRLIESR-Q------MQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESEL 175 (238)
Q Consensus 103 ~~L~~rw~~L~~~~~~r~~~L~~~~-~------l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~ei 175 (238)
.+--..|+.+......|..+|.... . +-.|..++..++.-|.+...+++.+++ ....|..+-.....+..+|
T Consensus 1163 h~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~sv-s~~~i~~l~~~~~~lr~~l 1241 (1758)
T KOG0994|consen 1163 HECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSV-SAEDIAQLASATESLRRQL 1241 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888877777654 2 236888888888889888888876654 3344555555666666666
Q ss_pred HhhhhhHHhHHHHHH
Q psy10628 176 AANKSRVGAVTAEGE 190 (238)
Q Consensus 176 ~~~~~~v~~l~~~g~ 190 (238)
.+-...+.++...-.
T Consensus 1242 ~~~~e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1242 QALTEDLPQEEETLS 1256 (1758)
T ss_pred HHHHhhhhhhhhhhh
Confidence 665555554443333
No 18
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.73 E-value=29 Score=31.16 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHchHH-HHhHhhhHHHH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q psy10628 3 GDDGLSSLKEAFLNNDD-IGESLSGVEAL-LRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDL 80 (238)
Q Consensus 3 ~~~~~~~l~~~w~~r~~-l~~~l~~~~~l-~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l 80 (238)
.+.+...|++.|..-.. .-.+-.+..+| .....|..-++..-...+ ---+.++.+..+-..+...|..+....+.+
T Consensus 293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie--~kEeei~~L~~~~d~L~~q~~kq~Is~e~f 370 (622)
T COG5185 293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIE--LKEEEIKALQSNIDELHKQLRKQGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHhcCCCHHHH
Confidence 34555566666654221 22222222222 244555555544322110 011223333333344444444444333333
Q ss_pred HHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHH
Q psy10628 81 EKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESR-QMQQFLRNMYEVGGWI 143 (238)
Q Consensus 81 ~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~-~l~~f~~~~~~~~~WL 143 (238)
..+- .....+-..++.++..-+.|.+-+.+|....+... .+..-.++.+.+..=|
T Consensus 371 e~mn--------~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i 426 (622)
T COG5185 371 ELMN--------QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI 426 (622)
T ss_pred HHHH--------HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 22345566777778788888888777766666544 3333334444333333
No 19
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=80.86 E-value=48 Score=30.80 Aligned_cols=76 Identities=12% Similarity=0.284 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHhhh
Q psy10628 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANK 179 (238)
Q Consensus 100 ~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~ei~~~~ 179 (238)
...+++...|......+..|...|...-.+..+.+.++++.. ..+.+|..+......++.+..++.+-.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----------~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----------KDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888754456666666665554 356788888888888888888887766
Q ss_pred hhHHhHH
Q psy10628 180 SRVGAVT 186 (238)
Q Consensus 180 ~~v~~l~ 186 (238)
..+..+.
T Consensus 233 ~~i~~~~ 239 (555)
T TIGR03545 233 QKIKSAK 239 (555)
T ss_pred HHHHHHH
Confidence 6666543
No 20
>KOG0516|consensus
Probab=80.10 E-value=70 Score=32.22 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHHHHHHhh
Q psy10628 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDP-TNLQSKIQKHAAFESELAAN 178 (238)
Q Consensus 100 ~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~-~~i~~~l~kh~~~~~ei~~~ 178 (238)
..+..+....+. .....+........-.++.+...+..-..|+..+..-+......+. ........-+..++.+++..
T Consensus 172 ~~~~ei~l~~Q~-~~ll~~s~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 250 (1047)
T KOG0516|consen 172 GLIWEIILHFQY-VKLLAEASARLQSLDSLQGSVSRASAELMWLFEAREELLQFDWSDRNLNGAARSEYSEVLMRELEQL 250 (1047)
T ss_pred hhHHHHHHHHHH-HHhhhhHHhhccchHHHHHhHhhhhHhhhhHHHHHHHHhccCChhhhhhHHHHHHHHHHHHHhhHHH
Confidence 333344333333 3334444444444446778888888888999998876544433332 12223344455566777777
Q ss_pred hhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy10628 179 KSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237 (238)
Q Consensus 179 ~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q~ 237 (238)
......+...|..+.-..++....+...++.+...|....+.+......+......++|
T Consensus 251 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~l~~~~~~e~~l~~~~~~~~~ 309 (1047)
T KOG0516|consen 251 VLRKNDLEVVGDQLLLGRHPARISREAYLAALLAQWSIELELEICAERHLKHNAAYFEF 309 (1047)
T ss_pred HHHHHHhhccchHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 77777777788888878888888999999999999999999998888877765555543
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.80 E-value=1.4e+02 Score=31.49 Aligned_cols=125 Identities=15% Similarity=0.196 Sum_probs=77.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHhhCCCC-CCh-hhHHHHHHHHHH
Q psy10628 94 DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQ-MQQFLRNMYEVGGWILQKQQICADESY-RDP-TNLQSKIQKHAA 170 (238)
Q Consensus 94 ~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~-l~~f~~~~~~~~~WL~~~~~~l~~~~~-~d~-~~i~~~l~kh~~ 170 (238)
-.+.|+..+..+...+..+......-+..+..+.+ +..+.........-+.+....+....+ .|. .....-.++ ..
T Consensus 986 ~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~-~~ 1064 (1486)
T PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR-DE 1064 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH-HH
Confidence 34678888888888888888888888888777763 345667777777777777766655433 343 222222332 55
Q ss_pred HHHHHHhhhhhHHhH--------------HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 171 FESELAANKSRVGAV--------------TAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSAL 223 (238)
Q Consensus 171 ~~~ei~~~~~~v~~l--------------~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~ 223 (238)
+...+.+++.+-..+ ...-..+ ......+...+..+..+|..|..++..
T Consensus 1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~----~~e~~~~re~I~~aK~~W~~v~~~~~~ 1127 (1486)
T PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKL----ERDYHEMREQVVNAKAGWCAVLRLVKD 1127 (1486)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555544433333 2222211 123456788889999999999887654
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.57 E-value=40 Score=24.43 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=52.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhc-------------CCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 156 RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS-------------GGHFAAAEIKTRLDELELEWRQLQESSA 222 (238)
Q Consensus 156 ~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~-------------~~~~~~~~i~~~~~~l~~~W~~L~~~~~ 222 (238)
.++..|..+-...+.++.|+.+.+..+..+...=+.+.. ......+.++..+.++..++..+..++-
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777788888888888777777544433322 1112345678888888888888888888
Q ss_pred HHHHHHHH
Q psy10628 223 LKRERLSD 230 (238)
Q Consensus 223 ~r~~~L~~ 230 (238)
++....++
T Consensus 93 EK~E~veE 100 (120)
T PF12325_consen 93 EKSEEVEE 100 (120)
T ss_pred chHHHHHH
Confidence 77776664
No 23
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.47 E-value=1e+02 Score=28.67 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 68 KALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESR 127 (238)
Q Consensus 68 ~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~ 127 (238)
..|......+..+...-..|+.... .=+.....+..+|..+.+...+.+..+..+.
T Consensus 108 ~~l~~~e~~i~~i~~~l~~L~~~e~----~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~ 163 (560)
T PF06160_consen 108 EQLDEIEEDIKEILDELDELLESEE----KNREEIEELKEKYRELRKELLAHSFSYGPAI 163 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhchhH
Confidence 3333344444455555445544322 2245567777777777777777666666554
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.18 E-value=43 Score=24.26 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhc-------------CCCCchHHHHHHHHHHHHHHHHHHH
Q psy10628 49 IGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAE-------------HHYDSSGIQQRLQAVIARKDRLKET 115 (238)
Q Consensus 49 ~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~-------------~~~~~~~i~~~l~~L~~rw~~L~~~ 115 (238)
.|+++..++.+-..-+.++.++.+.+..+..+...-+.+... .....+.++..+..++.||+.+...
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888899998888888886665554331 0123345566666666666666555
Q ss_pred HHHHHHHHH
Q psy10628 116 STARRKRLI 124 (238)
Q Consensus 116 ~~~r~~~L~ 124 (238)
.-++-...+
T Consensus 91 lGEK~E~ve 99 (120)
T PF12325_consen 91 LGEKSEEVE 99 (120)
T ss_pred hcchHHHHH
Confidence 555444433
No 25
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=67.44 E-value=31 Score=22.28 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q psy10628 171 FESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQ 218 (238)
Q Consensus 171 ~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~ 218 (238)
...+...+-..-..|++.+..|..... .......+..|...|..+-
T Consensus 25 ~~~~~~~n~~~K~~Li~~~~~l~~~~d--~~~~~~~~k~l~~~Wk~iG 70 (77)
T PF03993_consen 25 QDAEREENLEKKEALIEEAEALAESED--WKEAAEEIKELQQEWKEIG 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHcC
Confidence 444555566677788888888876433 5667778889999998763
No 26
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.97 E-value=98 Score=25.53 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcC-CCCchHHHHHHHHHHHHHHHH
Q psy10628 55 GVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEH-HYDSSGIQQRLQAVIARKDRL 112 (238)
Q Consensus 55 ~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~-~~~~~~i~~~l~~L~~rw~~L 112 (238)
.++..+++=+.+...|......|..++.....+-..+ ..+...+...+.+....-..+
T Consensus 81 ~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 81 NTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677666666666666665555422 234445555555554444444
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.35 E-value=1.2e+02 Score=25.97 Aligned_cols=78 Identities=8% Similarity=0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHH
Q psy10628 97 GIQQRLQAVIARKDRLKETSTARRKRLIESR-QMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESE 174 (238)
Q Consensus 97 ~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~-~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~e 174 (238)
.++..+..+...-........+-+..|...- .+........++..=|.+.+.....-.+-+..+|..+..++..++.-
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444344443332 23445555666666666666655444445677777777777776654
No 28
>KOG2150|consensus
Probab=57.79 E-value=1.4e+02 Score=27.75 Aligned_cols=121 Identities=12% Similarity=0.244 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHhHHHH-----HHHHhhCCCCCChhhHHHHHHHH
Q psy10628 97 GIQQRLQAVIARKDRLKETST-ARRKRLIESR--QMQQFLRNMYEVGGWILQ-----KQQICADESYRDPTNLQSKIQKH 168 (238)
Q Consensus 97 ~i~~~l~~L~~rw~~L~~~~~-~r~~~L~~~~--~l~~f~~~~~~~~~WL~~-----~~~~l~~~~~~d~~~i~~~l~kh 168 (238)
.|.+.++-.++-|+.+..... ..+.+|+.-| ..-.+++-.+++.+|+.. +..++. .---|+..+.+|
T Consensus 16 Kv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d-----~RrlIE~~MErf 90 (575)
T KOG2150|consen 16 KVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLD-----NRRLIEQRMERF 90 (575)
T ss_pred HhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHH-----HHHHHHHHHHHH
Confidence 344556667777777776654 4777888776 355777888999999764 333332 235578888888
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHhhc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 169 AAFESELAANKSRVGAVTAEGESLIS----GGHFAAAEIKTRLDELELEWRQLQESSALK 224 (238)
Q Consensus 169 ~~~~~ei~~~~~~v~~l~~~g~~L~~----~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r 224 (238)
++.+.|.....=.-++| ..++.| . ......+-|...+++|+.....+..-.-+|
T Consensus 91 K~vEke~KtKa~SkegL-~~~~kl-DPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~ 148 (575)
T KOG2150|consen 91 KAVEKEMKTKAFSKEGL-SAAEKL-DPKEKEKRDTMDWISNQIDELERQVDSFEAEELER 148 (575)
T ss_pred HHHHHHhhccccchhhc-cccccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876543222222 111111 0 001123568888999999888887733333
No 29
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=57.36 E-value=47 Score=22.67 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=47.5
Q ss_pred HHHHhhhhhHHhHHHHHHHhhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10628 173 SELAANKSRVGAVTAEGESLIS-GGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQ 235 (238)
Q Consensus 173 ~ei~~~~~~v~~l~~~g~~L~~-~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~ 235 (238)
..+.+..|.-..+.+.|+-++. .+-|.+..|+.-++.+-+.|.-=.+-+-++.+.|-.....|
T Consensus 16 d~Ll~~~p~d~~L~eLARL~iRY~gFPGA~diq~DL~kiL~~W~lteeeLf~kTR~I~~~g~v~ 79 (90)
T PF11691_consen 16 DRLLAGEPTDYNLAELARLRIRYQGFPGARDIQKDLDKILQKWGLTEEELFEKTREIHASGGVY 79 (90)
T ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcC
Confidence 3344455777788888887776 67889999999999999999877777777777666554433
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.86 E-value=3e+02 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=10.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q psy10628 196 GHFAAAEIKTRLDELELEWRQLQ 218 (238)
Q Consensus 196 ~~~~~~~i~~~~~~l~~~W~~L~ 218 (238)
|....+.-.....++...|....
T Consensus 487 Gkv~~~~a~~~~~~~~~~~~~~~ 509 (1486)
T PRK04863 487 GEVSRSEAWDVARELLRRLREQR 509 (1486)
T ss_pred CCcCHHHHHHHHHHHHHHhHHHH
Confidence 33444444445555555544443
No 31
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.59 E-value=52 Score=26.84 Aligned_cols=89 Identities=7% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHH
Q psy10628 98 IQQRLQAVIARKDRLKETST-ARRKRLIESR--QMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESE 174 (238)
Q Consensus 98 i~~~l~~L~~rw~~L~~~~~-~r~~~L~~~~--~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~e 174 (238)
|..-+...+.-|+.+..... ..+.+|+.-+ .+-.+++-.+++.+|+...+--=..+....-..|+..+.+|+.++.+
T Consensus 17 v~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~vEke 96 (233)
T PF04065_consen 17 VQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKVVEKE 96 (233)
T ss_pred HHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666333 3566676665 34456666778888885422110000001235677778888888888
Q ss_pred HHhhhhhHHhHH
Q psy10628 175 LAANKSRVGAVT 186 (238)
Q Consensus 175 i~~~~~~v~~l~ 186 (238)
.....-.-++|.
T Consensus 97 sKtKafSkeGL~ 108 (233)
T PF04065_consen 97 SKTKAFSKEGLM 108 (233)
T ss_pred hcccccchhhhh
Confidence 776665555544
No 32
>KOG0035|consensus
Probab=52.42 E-value=4.3 Score=39.17 Aligned_cols=104 Identities=22% Similarity=0.217 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhCCCCC--ChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHH
Q psy10628 129 MQQFLRNMYEVGGWILQKQQICADESYR--DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTR 206 (238)
Q Consensus 129 l~~f~~~~~~~~~WL~~~~~~l~~~~~~--d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~ 206 (238)
...|-.++..-+.|...++.++....++ -...+....++|.+|+..+.++..++..+...+..|-....+.+...-..
T Consensus 396 ~~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~~ 475 (890)
T KOG0035|consen 396 ASKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAAD 475 (890)
T ss_pred hhhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3468888888999999999988665552 35899999999999999999999999999999999887544445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 207 LDELELEWRQLQESSALKRERLSDAY 232 (238)
Q Consensus 207 ~~~l~~~W~~L~~~~~~r~~~L~~a~ 232 (238)
+......|..+-.+...|+-.|....
T Consensus 476 ~q~i~dq~~~~~~ls~~r~pal~~~~ 501 (890)
T KOG0035|consen 476 CQHICDQWDDLGQLSRKRRPALMQME 501 (890)
T ss_pred hhhccccccccchhhhhhchhhhhhh
Confidence 77778888887777766666665443
No 33
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=51.02 E-value=2.2e+02 Score=26.97 Aligned_cols=191 Identities=18% Similarity=0.215 Sum_probs=103.4
Q ss_pred HHHHHHHHHchHH-HHhHhhhH------------HHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy10628 7 LSSLKEAFLNNDD-IGESLSGV------------EALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQ 73 (238)
Q Consensus 7 ~~~l~~~w~~r~~-l~~~l~~~------------~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~ 73 (238)
...+|+++..|.. |+..+... +.-.....|+..+|..+...+|+--+..++.+-.+.+. +|...
T Consensus 196 ~rdVR~aC~~~~~flq~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~vE~v~~~~pP~~vL~AL~~la~~~~~---~i~~~ 272 (632)
T PF14817_consen 196 LRDVREACELRAQFLQSLLESFPAYGSSHAGHRDQRQASYQQWLSIVEKVLTNHPPNHVLQALEHLASRRKA---EIRSE 272 (632)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCCCccchhhhHHHHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHH
Confidence 4567888887776 43222111 12246788999999999886655556666655555432 23222
Q ss_pred HhhHHHHHHHHHhhHh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy10628 74 LSRIDDLEKFAKDLLA---EHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQIC 150 (238)
Q Consensus 74 ~~~v~~l~~~~~~L~~---~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l 150 (238)
..+++ +..-++.+-. ..+.+...+...-.-|...|..+.....++......+..+. ..+..-+.+.+..+
T Consensus 273 ~~~id-~~~D~e~lr~~l~d~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~------~~L~~~~~e~~~~~ 345 (632)
T PF14817_consen 273 TESID-VRADAEYLRNQLEDVSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALS------QRLQRLLEEIERRL 345 (632)
T ss_pred Hhhcc-chhhHHHhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 22332 2222222221 12234455666666777899988888888877776554333 23334444444444
Q ss_pred hCCCCCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy10628 151 ADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESS 221 (238)
Q Consensus 151 ~~~~~~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~ 221 (238)
++.. ..... ..+.++......++.|....+.|-.. ...=+..++.|..+|+.+.+.-
T Consensus 346 ~~~s--~~~al--------~~ele~~~l~A~l~~L~se~q~L~~~----~~~r~e~~~~Lq~K~q~I~~fr 402 (632)
T PF14817_consen 346 SGSS--EREAL--------ALELEVAGLKASLNALRSECQRLKEA----AAERQEALRSLQAKWQRILDFR 402 (632)
T ss_pred cCcc--hhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 11111 33446666666666776666666542 1223344667777777765543
No 34
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.05 E-value=1.2e+02 Score=22.72 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHH
Q psy10628 52 SLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRL 112 (238)
Q Consensus 52 ~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L 112 (238)
+.+.-...-+-|+.|..+....+..+-.=...-+.|+....+|...|+....+|..--..|
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555666667788888888887776666666667777888899888876666665544433
No 35
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=44.80 E-value=2.9e+02 Score=26.51 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh---CC-C-CCChhhHHHHHHHH
Q psy10628 94 DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICA---DE-S-YRDPTNLQSKIQKH 168 (238)
Q Consensus 94 ~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~---~~-~-~~d~~~i~~~l~kh 168 (238)
..+.|..+-..|..+|..|..-+..=++.|-+..-..-|..-..++..-+...+..+. .. . +-....-..+-++.
T Consensus 236 a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i 315 (683)
T PF08580_consen 236 ACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQI 315 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 3457888888888899999988888888887776666677777777777777766542 11 1 11111112222233
Q ss_pred HHHHHHHHhhhhhHHhHH--HHHHHhhcCCCCChHHHHHHHH-HHHHHHHHHHHHHH
Q psy10628 169 AAFESELAANKSRVGAVT--AEGESLISGGHFAAAEIKTRLD-ELELEWRQLQESSA 222 (238)
Q Consensus 169 ~~~~~ei~~~~~~v~~l~--~~g~~L~~~~~~~~~~i~~~~~-~l~~~W~~L~~~~~ 222 (238)
+.+++-+. .+-.++ +....|+.. .|..+++ +|..+|..|...+.
T Consensus 316 ~s~~~k~~----~~~~~I~ka~~~sIi~~------gv~~r~n~~L~~rW~~L~~~~d 362 (683)
T PF08580_consen 316 ESKEKKKS----HYFPAIYKARVLSIIDK------GVADRLNADLAQRWLELKEDMD 362 (683)
T ss_pred HHHHHHHh----ccHHHHHHHHHHHhhhh------hHHHHhhHHHHHHHHHHHHHHH
Confidence 33333332 223334 444455543 2777788 99999999984443
No 36
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=43.19 E-value=1.3e+02 Score=25.06 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=43.3
Q ss_pred hhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 178 NKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDA 231 (238)
Q Consensus 178 ~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a 231 (238)
-...|+.|...++.|+..+|. +.+++++..|..+|..|.+.++.-...+.+-
T Consensus 155 ~d~dvevLL~~ae~L~~vYP~--~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 155 EDVDVEVLLRGAEKLCNVYPL--PGAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred ccCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999988764 3788999999999999999988887777654
No 37
>KOG0994|consensus
Probab=43.18 E-value=3.9e+02 Score=27.52 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 97 GIQQRLQAVIARKDRLKETSTARRKRLIESR 127 (238)
Q Consensus 97 ~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~ 127 (238)
.++.....-+++=+.+...++.-+..|+.+-
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555666666666543
No 38
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.95 E-value=2.8e+02 Score=25.83 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=30.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhc------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS------GGHFAAAEIKTRLDELELEWRQLQESSALKRE 226 (238)
Q Consensus 157 d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~------~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~ 226 (238)
||..+.....+...+..=...+.+.++.+....+++.. .+......+...+..+...|......+...+.
T Consensus 295 Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 295 DPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444344443333444444444444444332 11122344555555555555555544444433
No 39
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.09 E-value=1.9e+02 Score=23.61 Aligned_cols=77 Identities=10% Similarity=0.197 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHc---------hHHHHh----HhhhHH-HHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q psy10628 4 DDGLSSLKEAFLN---------NDDIGE----SLSGVE-ALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKA 69 (238)
Q Consensus 4 ~~~~~~l~~~w~~---------r~~l~~----~l~~~~-~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~ 69 (238)
.||+..+.+.|.. +.+|.. -+.-.+ --.++-.|+...+.. ....+...-..++..+.+++.++.+
T Consensus 18 ~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~IE~~MErFK~vEke 96 (233)
T PF04065_consen 18 QEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKLIEEQMERFKVVEKE 96 (233)
T ss_pred HHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888873 222332 111111 113788898665554 1111223344688899999999999
Q ss_pred HHHhHhhHHHHH
Q psy10628 70 LEAQLSRIDDLE 81 (238)
Q Consensus 70 i~~~~~~v~~l~ 81 (238)
.....-+-+.|.
T Consensus 97 sKtKafSkeGL~ 108 (233)
T PF04065_consen 97 SKTKAFSKEGLM 108 (233)
T ss_pred hcccccchhhhh
Confidence 888766666555
No 40
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.13 E-value=95 Score=19.85 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhH
Q psy10628 56 VEALLRKHKAFEKALEAQLSRIDDLEKFAKDLL 88 (238)
Q Consensus 56 ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~ 88 (238)
|+.+|..|..+..+=......+..+...-..|+
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333
No 41
>PF12178 INCENP_N: Chromosome passenger complex (CPC) protein INCENP N terminal; InterPro: IPR022006 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N-terminal domain is the domain involved in formation of this three helical bundle. ; PDB: 2QFA_C.
Probab=40.04 E-value=71 Score=18.05 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHchHHHHhHhhhHHHHHHHHHHHHHHHh
Q psy10628 5 DGLSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEA 42 (238)
Q Consensus 5 ~~~~~l~~~w~~r~~l~~~l~~~~~l~~l~~WL~~~e~ 42 (238)
+|..+|.+-+.. ++.+|+...+. .-..||.+++.
T Consensus 2 ~g~~~L~e~~~~--Kl~efl~~vd~--~d~vWLeEI~e 35 (38)
T PF12178_consen 2 EGPQHLLEVCDQ--KLQEFLCNVDN--KDMVWLEEIQE 35 (38)
T ss_dssp SSGGGHHHHHHH--HHHHHHHHHHH--THHHHHHHHHH
T ss_pred chhHHHHHHHHH--HHHHHHHhccc--hhhHHHHHHHH
Confidence 356667776655 67777776651 35779998864
No 42
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=39.30 E-value=1e+02 Score=19.69 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHH
Q psy10628 75 SRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLK 113 (238)
Q Consensus 75 ~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~ 113 (238)
..-..|+..+..|+.. .+.......+..|..+|..+.
T Consensus 34 ~~K~~Li~~~~~l~~~--~d~~~~~~~~k~l~~~Wk~iG 70 (77)
T PF03993_consen 34 EKKEALIEEAEALAES--EDWKEAAEEIKELQQEWKEIG 70 (77)
T ss_pred HHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcC
Confidence 3444555666666553 346777888889999998764
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.07 E-value=4.5e+02 Score=27.09 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHH
Q psy10628 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQM--QQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESE 174 (238)
Q Consensus 97 ~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l--~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~e 174 (238)
........++..|..+..........+...... ..|.....++..|.... |.+ .+.|+..|..+-.+.+.++.+
T Consensus 711 ~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~e---L~~-~GvD~~~I~~l~~~i~~L~~~ 786 (1201)
T PF12128_consen 711 QLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQE---LAG-KGVDPERIQQLKQEIEQLEKE 786 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh-CCCCHHHHHHHHHHHHHHHHH
Confidence 344444556677777777777766666665532 35777777777777643 222 235777777777777777776
Q ss_pred HHhhhhhHHhHHHHHHHhhc----------CCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 175 LAANKSRVGAVTAEGESLIS----------GGHFA---AAEIKTRLDELELEWRQLQESSALKRERLSDAYQ 233 (238)
Q Consensus 175 i~~~~~~v~~l~~~g~~L~~----------~~~~~---~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~ 233 (238)
|......=..|..--.-+-. ..|.. ...+...+..+......+......+...|++...
T Consensus 787 l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~ 858 (1201)
T PF12128_consen 787 LKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELK 858 (1201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544333333222222221 11110 1234455555555555555555666666655443
No 44
>PF13514 AAA_27: AAA domain
Probab=38.11 E-value=4.5e+02 Score=26.79 Aligned_cols=212 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred chhhHHHH-HHHHHchHHHHhHhhhHHH----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhH
Q psy10628 3 GDDGLSSL-KEAFLNNDDIGESLSGVEA----LLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRI 77 (238)
Q Consensus 3 ~~~~~~~l-~~~w~~r~~l~~~l~~~~~----l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v 77 (238)
.++.+..+ +.-......+++.|-.... +..+...|..--..+-.+. +....+..++++++.++..|.......
T Consensus 96 d~~~L~~gG~~l~~~~gdlg~~Lf~agaG~~~l~~~~~~L~~ea~~Lfkpr--g~~~~in~~l~~l~e~~~~l~~~~~~~ 173 (1111)
T PF13514_consen 96 DHEELREGGESLLEAEGDLGQLLFSAGAGLGSLSQVLKQLDKEADELFKPR--GRKPEINQALKELKELERELREAEVRA 173 (1111)
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHHHhhCCC--CCChHHHHHHHHHHHHHHHHHHHhccH
Q ss_pred HHHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCC
Q psy10628 78 DDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTA---RRKRLIESRQMQQFLRNMYEVGGWILQKQQICADES 154 (238)
Q Consensus 78 ~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~---r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~ 154 (238)
...... ...+.....++..+...... +...|+......-++.....+..-|... .-+...+
T Consensus 174 ~~y~~l---------------~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l-~~~~~~p 237 (1111)
T PF13514_consen 174 AEYQEL---------------QQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAEL-GEVPDFP 237 (1111)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCcCCCC
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 155 YRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGH--FAAAEIKTRLDELELEWRQLQESSALKRERLSDAY 232 (238)
Q Consensus 155 ~~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~--~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~ 232 (238)
......+.....+...+..++......+..+...-..+....+ ...+.|.. +......|.....-+..+...+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~-L~~~~~~~~~~~~dl~~~~~e~~~~~ 316 (1111)
T PF13514_consen 238 EDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEA-LEEQRGEYRKARQDLPRLEAELAELE 316 (1111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy10628 233 Q 233 (238)
Q Consensus 233 ~ 233 (238)
.
T Consensus 317 ~ 317 (1111)
T PF13514_consen 317 A 317 (1111)
T ss_pred H
No 45
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=37.44 E-value=2e+02 Score=22.46 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHH
Q psy10628 111 RLKETSTARRKRLIESRQMQ-QFLRNMYEVGGWILQKQQI 149 (238)
Q Consensus 111 ~L~~~~~~r~~~L~~~~~l~-~f~~~~~~~~~WL~~~~~~ 149 (238)
.+..-...|-..+-.++.+. .|...-++..+||......
T Consensus 5 ~~r~E~k~r~~a~~~CI~Lk~rFEekE~eWsdWLk~~R~~ 44 (182)
T PF05218_consen 5 KMRRESKQRFAAFLQCIQLKQRFEEKEQEWSDWLKKLRQP 44 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777664 5999999999999886443
No 46
>KOG3958|consensus
Probab=36.73 E-value=2.7e+02 Score=23.73 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhhcCC---------CC-C-CCHHHHHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHhhHhcC--C-C
Q psy10628 29 ALLRKHKAFENKEAFLNND---------DI-G-ESLSGVEALLRKHKAFEKALE-AQLSRIDDLEKFAKDLLAEH--H-Y 93 (238)
Q Consensus 29 ~l~~l~~WL~~~e~~l~~~---------~~-~-~~l~~ve~~l~~h~~l~~~i~-~~~~~v~~l~~~~~~L~~~~--~-~ 93 (238)
.+..++.-|.+.|..+... .. | +-++.|+.+..+-..+.-+.- ....++.++.-.-..+.+.. + .
T Consensus 192 kVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~~ 271 (371)
T KOG3958|consen 192 KVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKASVE 271 (371)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3567889999999887641 11 2 346777777777666654433 35556666666666666321 1 1
Q ss_pred CchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCC
Q psy10628 94 DSSGIQQRLQ---AVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADE 153 (238)
Q Consensus 94 ~~~~i~~~l~---~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~ 153 (238)
|+ ....++. ++-.||+-++.-.=+--.++..--+++++...+..+..=|.-+..++.+.
T Consensus 272 Da-~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~s 333 (371)
T KOG3958|consen 272 DA-DTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANS 333 (371)
T ss_pred cc-hhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2233333 44679998888776666666655567766666677777777777776543
No 47
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=36.62 E-value=4.8e+02 Score=26.60 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHHHHH
Q psy10628 28 EALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIA 107 (238)
Q Consensus 28 ~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~ 107 (238)
..+++-..-|.+-...+-+..-.-|+..++.+=++.+.+...+.. .-+..+...-..|....|..-..|+.+...++.
T Consensus 1134 nnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~d--Ayl~eitKqIsaLe~e~PKnltdvK~missf~d 1211 (1439)
T PF12252_consen 1134 NNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYD--AYLVEITKQISALEKEKPKNLTDVKSMISSFND 1211 (1439)
T ss_pred HHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHh
Confidence 344455555555555554433335777777777777766666654 234444444445555556666688888888888
Q ss_pred HHHHHHHHHHHHHHH
Q psy10628 108 RKDRLKETSTARRKR 122 (238)
Q Consensus 108 rw~~L~~~~~~r~~~ 122 (238)
+-..+...-.+|-++
T Consensus 1212 ~laeiE~LrnErIKk 1226 (1439)
T PF12252_consen 1212 RLAEIEFLRNERIKK 1226 (1439)
T ss_pred hhhHHHHHHHHHhhc
Confidence 888887765555444
No 48
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=35.43 E-value=1.4e+02 Score=20.29 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10628 158 PTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGH---FAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQT 234 (238)
Q Consensus 158 ~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~---~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~ 234 (238)
|.++...+...+.+...+.. ....+......++...+ ...+.....+..+...+..+...+.++-..-..++.+
T Consensus 14 P~el~r~l~~irelD~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d~ 90 (105)
T PF12998_consen 14 PAELQRNLTLIRELDAKSQD---LLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAYDL 90 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444333 33444555556665433 2445778889999999999999999988877777654
No 49
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=34.70 E-value=71 Score=16.92 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10628 200 AAEIKTRLDELELEWRQLQ 218 (238)
Q Consensus 200 ~~~i~~~~~~l~~~W~~L~ 218 (238)
...|+++.+-|+.-|..+.
T Consensus 8 r~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 8 RQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999874
No 50
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.91 E-value=3.9e+02 Score=24.52 Aligned_cols=149 Identities=14% Similarity=0.230 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhc---------CCCCchHHHH
Q psy10628 32 RKHKAFENKEAFLNN--DDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAE---------HHYDSSGIQQ 100 (238)
Q Consensus 32 ~l~~WL~~~e~~l~~--~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~---------~~~~~~~i~~ 100 (238)
.-..=|..+|..|.. .+.|.--..+..+..+...+...+.+++.....|...-+.++-. ++.+..-+..
T Consensus 25 ~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v~e~~~~~ 104 (508)
T PF04129_consen 25 ECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEGPVNEQYIEE 104 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCCCHHHHHH
Confidence 455555666666553 23444456677788888888888888888777777776666431 3334333433
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHH-HHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHh
Q psy10628 101 RLQAVIARKDRLKETST-ARRKRLIESR-QMQQ-FLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAA 177 (238)
Q Consensus 101 ~l~~L~~rw~~L~~~~~-~r~~~L~~~~-~l~~-f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~ei~~ 177 (238)
.+..++ +......-.. .--+...+.. .+.. -...++.+..||-.+...+..+. .+...++..+-+++.+-.=+..
T Consensus 105 ~~~~~~-k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~-tn~q~iQ~~LLk~~~~~~FL~~ 182 (508)
T PF04129_consen 105 LLELLK-KKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPK-TNSQIIQQVLLKYKELFQFLKK 182 (508)
T ss_pred HHHHHH-HHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHhhHHHHHHHHH
Confidence 332222 1111111000 0001111111 1222 23568889999999999988765 6778888777788888887777
Q ss_pred hhhhH
Q psy10628 178 NKSRV 182 (238)
Q Consensus 178 ~~~~v 182 (238)
|.+.+
T Consensus 183 ~~~~~ 187 (508)
T PF04129_consen 183 HSPEL 187 (508)
T ss_pred hhHHH
Confidence 77655
No 51
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=32.26 E-value=1.4e+02 Score=19.20 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10628 198 FAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQ 235 (238)
Q Consensus 198 ~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~ 235 (238)
+..+.+...+..+...-..+...+..|...|...+.-.
T Consensus 37 ~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~ 74 (84)
T PF05400_consen 37 PEQEELRELLRRILELDQEIRALLQARRDELKQELRQL 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999999999998877644
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.31 E-value=3.6e+02 Score=23.60 Aligned_cols=14 Identities=14% Similarity=-0.111 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhc
Q psy10628 32 RKHKAFENKEAFLN 45 (238)
Q Consensus 32 ~l~~WL~~~e~~l~ 45 (238)
.-..|=-++|..+-
T Consensus 192 d~~eWklEvERV~P 205 (359)
T PF10498_consen 192 DPAEWKLEVERVLP 205 (359)
T ss_pred CHHHHHHHHHHHhh
Confidence 35567666666543
No 53
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.66 E-value=2.3e+02 Score=21.21 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLS 229 (238)
Q Consensus 157 d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~ 229 (238)
+++.-.....=|+.|..+....+..+-.-...-+.|+...+|+...|..-..++.. |...+.+.+..+.
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~----Lr~kL~e~r~~~~ 113 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMEN----LRQSLDELRVKRD 113 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45555556666788888888888888777778888888888888776555555443 4444444444333
No 54
>PF11401 Tetrabrachion: Tetrabrachion; InterPro: IPR021535 Tetrabrachion forms a parallel right-handed coiled coil structure with hydrophobic interactions and salt bridges forming a thermostable tetrameric structure. It contains large hydrophobic cavities. No function is known for this family of proteins []. ; PDB: 1FE6_C 1YBK_A.
Probab=30.40 E-value=1.1e+02 Score=17.38 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 209 ELELEWRQLQESSALKRERLSDA 231 (238)
Q Consensus 209 ~l~~~W~~L~~~~~~r~~~L~~a 231 (238)
-+..+|++|.++..-|..+|+.-
T Consensus 16 iiddryeslknlitlradrlemi 38 (49)
T PF11401_consen 16 IIDDRYESLKNLITLRADRLEMI 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccHHHHHHHHHhhhHhhhhhh
Confidence 35679999999999999998854
No 55
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.00 E-value=2.7e+02 Score=21.69 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHHHhhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHhHHHHHHHHhhC
Q psy10628 79 DLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESR-QMQQF--LRNMYEVGGWILQKQQICAD 152 (238)
Q Consensus 79 ~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~-~l~~f--~~~~~~~~~WL~~~~~~l~~ 152 (238)
.++..++..+.........++..+..+..+|-.+.+-.+.-+++...-. ....| ..-+..+..=++.-+..+..
T Consensus 12 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~ 88 (178)
T PRK14161 12 TINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAH 88 (178)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 4455555555544444456677777778888777777776666655443 33222 23355566666666666643
No 56
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=29.37 E-value=4.4e+02 Score=23.95 Aligned_cols=207 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHhcCCCCchHHHHHHHH
Q psy10628 25 SGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQA 104 (238)
Q Consensus 25 ~~~~~l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~ 104 (238)
.+...+..+..|+..+..-+...-....-.-...+...-+.+..-+....+.-.-+....+.|..--..-......+...
T Consensus 8 rh~~~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~ 87 (473)
T PF14643_consen 8 RHEKALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQW 87 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------HHHHHHHHH
Q psy10628 105 VIARKDRLKETSTARRKRLIESRQ-----------------------------------------------MQQFLRNMY 137 (238)
Q Consensus 105 L~~rw~~L~~~~~~r~~~L~~~~~-----------------------------------------------l~~f~~~~~ 137 (238)
|+.--..|...-.+|..+|...+. .........
T Consensus 88 I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~ 167 (473)
T PF14643_consen 88 IKELDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRELS 167 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhH---------------HHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCC-hH
Q psy10628 138 EVGGW---------------ILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFA-AA 201 (238)
Q Consensus 138 ~~~~W---------------L~~~~~~l~~~~~~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~-~~ 201 (238)
....| |..-...+.++.+.+|..+...+..+...+..+. ..++..|...+.-+-...+.. ..
T Consensus 168 ~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~Q~~l~--~~r~~~L~~l~~l~Pp~~t~~~v~ 245 (473)
T PF14643_consen 168 YRRRWQDRVDDWRALRHERAIQEFREFMASEEFQNPPERKQLLEQMRKEQVDLH--EKRLELLQSLCDLLPPNLTKEKVE 245 (473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 202 EIKTRLDELELEWRQLQESSALKRERLSDAYQ 233 (238)
Q Consensus 202 ~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~ 233 (238)
.....+..++..|......+-.+-..+.+...
T Consensus 246 eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~ 277 (473)
T PF14643_consen 246 EWYASLNALNEQIDEYHQQCMEKLRALYEKIC 277 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 57
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.98 E-value=2.8e+02 Score=21.68 Aligned_cols=95 Identities=9% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q psy10628 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQ-------MQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHA 169 (238)
Q Consensus 97 ~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~-------l~~f~~~~~~~~~WL~~~~~~l~~~~~~d~~~i~~~l~kh~ 169 (238)
..+..+..+...-..+.....+-...++.+.. .........++..=+.....-+......||..|..+-....
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~ 145 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIK 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555555555555555555554444444321 12233344444444444333333222368888888888888
Q ss_pred HHHHHHHhhhhhHHhHHHHHHH
Q psy10628 170 AFESELAANKSRVGAVTAEGES 191 (238)
Q Consensus 170 ~~~~ei~~~~~~v~~l~~~g~~ 191 (238)
.....+...-+.+..|..-...
T Consensus 146 ~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 146 IAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888877888777666555
No 58
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=28.87 E-value=3.4e+02 Score=22.61 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHhHhhhHHH----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy10628 20 IGESLSGVEA----LLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEA 72 (238)
Q Consensus 20 l~~~l~~~~~----l~~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~ 72 (238)
+..|+.+.+. +-.+..-|..++..|..-+..++.+.-..+..+++.+......
T Consensus 142 y~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~ed 198 (264)
T PF08687_consen 142 YRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLED 198 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 4444444442 3445555666777776655555556666666666555554443
No 59
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.50 E-value=1.4e+02 Score=17.58 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=7.8
Q ss_pred HHHHHHHHHhHhhHHHHHHH
Q psy10628 64 KAFEKALEAQLSRIDDLEKF 83 (238)
Q Consensus 64 ~~l~~~i~~~~~~v~~l~~~ 83 (238)
...+..|......+..+...
T Consensus 15 d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHH
Confidence 33444444333333333333
No 60
>PF13675 PilJ: Type IV pili methyl-accepting chemotaxis transducer N-term; PDB: 3EZI_D 3EZH_B.
Probab=26.83 E-value=2.1e+02 Score=19.58 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 170 AFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSAL 223 (238)
Q Consensus 170 ~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~ 223 (238)
.+...+.........|..-+..+. ..+.|...+..+...|..+...+..
T Consensus 47 ~l~~~~~~f~~~l~~L~~~~~~~~-----~~~~i~~~~~~v~~~W~~~~~~~~~ 95 (112)
T PF13675_consen 47 ELREAIAEFEQSLQALQNGDPSLG-----PSPEIRAQLQQVEALWQELRPALQA 95 (112)
T ss_dssp HHHHHHT------HHHHHHHHH---------TT-HHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443 3456888899999999999888765
No 61
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=25.36 E-value=2.3e+02 Score=19.41 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERL 228 (238)
Q Consensus 157 d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L 228 (238)
+++.....-.-+..+..++...+..+......-..++...+++...|....+++......+.....+....+
T Consensus 43 t~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~ 114 (125)
T PF13801_consen 43 TPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEI 114 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666677878888888888888888888899999999988888888877766655544433
No 62
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.04 E-value=2.5e+02 Score=19.68 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHh
Q psy10628 32 RKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLA 89 (238)
Q Consensus 32 ~l~~WL~~~e~~l~~~~~~~~l~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~~~L~~ 89 (238)
....=+..+|..+...+-..++..++. .-..+..++.....+++.+.+..+-|++
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l---~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQL---ELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777766533344444444 3445556666666777777777776665
No 63
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=24.83 E-value=4e+02 Score=22.03 Aligned_cols=128 Identities=8% Similarity=0.102 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHHHHHHh
Q psy10628 99 QQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRD-PTNLQSKIQKHAAFESELAA 177 (238)
Q Consensus 99 ~~~l~~L~~rw~~L~~~~~~r~~~L~~~~~l~~f~~~~~~~~~WL~~~~~~l~~~~~~d-~~~i~~~l~kh~~~~~ei~~ 177 (238)
...+..|...-..|.....+|...+........ ..++..+...+.. ....+ .......+++|..+...|..
T Consensus 140 ~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~-~d~i~~~l~~~~~-------~~~~~~~~lf~~eL~k~~~~~~~i~~ 211 (296)
T PF13949_consen 140 SEVIRQLRELLNKLEELKKEREELLEQLKEKLQ-NDDISKLLSELNK-------NGSADFEALFEEELKKFDPLQNRIQQ 211 (296)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-------SSS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHhhc-------cCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666677776665432111 1223333332221 11122 35556677888777776665
Q ss_pred hh----hhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10628 178 NK----SRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236 (238)
Q Consensus 178 ~~----~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q 236 (238)
.. ..+..|...-..+...... .........+-..+..-.....+-...|.+...||.
T Consensus 212 ~~~~Q~~ll~~i~~~~~~~~~~~~~--~~~~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~ 272 (296)
T PF13949_consen 212 NLSKQEELLQEIQEANEEFAQSRKS--DQEQKERESALQRLEAAYDAYKELSSNLEEGLKFYN 272 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44 4556666666666544322 122244555555555666666666777778877773
No 64
>KOG0860|consensus
Probab=24.65 E-value=2.7e+02 Score=20.03 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHH----hhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q psy10628 169 AAFESELA----ANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQ 218 (238)
Q Consensus 169 ~~~~~ei~----~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~ 218 (238)
+.++++++ -.++.|+.+.+.|++|- .+.++.+.|...=..+.
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER~ekL~--------~L~drad~L~~~as~F~ 77 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLERGEKLD--------ELDDRADQLQAGASQFE 77 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcchHH--------HHHHHHHHHHHHHHHHH
Confidence 44444444 35678888888888873 44555555544444443
No 65
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.27 E-value=2.3e+02 Score=18.69 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 171 FESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERL 228 (238)
Q Consensus 171 ~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L 228 (238)
..++|.+....|..|......|-..- +....+..+++.+..+-..|...+..-...|
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777765443 4566788889999999888888877766555
No 66
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.90 E-value=4.8e+02 Score=22.28 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhHH
Q psy10628 158 PTNLQSKIQKHAAFESELAANKSRVGAVT 186 (238)
Q Consensus 158 ~~~i~~~l~kh~~~~~ei~~~~~~v~~l~ 186 (238)
...+..+.+|.+.++.|-...+.....+.
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567777788888877666555444443
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.84 E-value=3.4e+02 Score=20.53 Aligned_cols=58 Identities=12% Similarity=0.244 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 160 NLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRER 227 (238)
Q Consensus 160 ~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~ 227 (238)
....+......++.++.....++..+.. +.. +...+. ...+...|......+..|++.
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~-----~vs~ee----~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLRS-GSK-----PVSPEE----KEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-----CCCHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666665543 211 122223 556677777777777777654
No 68
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=22.34 E-value=4.1e+02 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy10628 54 SGVEALLRKHKAFEKALEAQLSRIDDLEKFA 84 (238)
Q Consensus 54 ~~ve~~l~~h~~l~~~i~~~~~~v~~l~~~~ 84 (238)
..+..++.....+..++.+....+..+....
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 4466666666666666666666665555443
No 69
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.63 E-value=6.6e+02 Score=23.34 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=40.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHhhc------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10628 156 RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS------GGHFAAAEIKTRLDELELEWRQLQESSALKRE 226 (238)
Q Consensus 156 ~d~~~i~~~l~kh~~~~~ei~~~~~~v~~l~~~g~~L~~------~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~ 226 (238)
.||..+...-.+...+..-...+.+.++.+....+.+.. ........++..+..+...+..+...+...+.
T Consensus 298 ~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 298 FDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467666666666666666555666666666666655543 11123355666666666666666555554443
No 70
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.99 E-value=2.2e+02 Score=21.61 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q psy10628 201 AEIKTRLDELELEWRQ--LQESSALKRERLSDAYQT 234 (238)
Q Consensus 201 ~~i~~~~~~l~~~W~~--L~~~~~~r~~~L~~a~~~ 234 (238)
+.++.|++-|...|++ |..-+.++-..|-+|+.-
T Consensus 68 ~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~ 103 (157)
T PF07304_consen 68 DDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQA 103 (157)
T ss_dssp HHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHc
Confidence 4677888888888875 666666666666666654
No 71
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.74 E-value=3.8e+02 Score=20.27 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy10628 96 SGIQQRLQAVIARKDR--LKETSTARRKRLIESRQMQQF 132 (238)
Q Consensus 96 ~~i~~~l~~L~~rw~~--L~~~~~~r~~~L~~~~~l~~f 132 (238)
+.+.+|+.-|...|.. |..-+.++-..|-.++....|
T Consensus 68 ~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 68 DDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4667777777777763 555555555555555544333
No 72
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=20.67 E-value=3.1e+02 Score=19.14 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHhHhhHHHHHHHHHhhHhcCCCC
Q psy10628 67 EKALEAQLSRIDDLEKFAKDLLAEHHYD 94 (238)
Q Consensus 67 ~~~i~~~~~~v~~l~~~~~~L~~~~~~~ 94 (238)
.-.|.....++..++.+|+-|+...+.+
T Consensus 5 di~l~~~~EkiatLNKmAEvLinlks~~ 32 (99)
T PF11083_consen 5 DIKLTQTQEKIATLNKMAEVLINLKSDD 32 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3445566778999999999999765443
No 73
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.22 E-value=6e+02 Score=22.31 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCC----------C-CCHHHHHHHHHHHHHH-HHHHHHhHhhHHHHHHHHHhhHhc
Q psy10628 29 ALLRKHKAFENKEAFLNNDDI----------G-ESLSGVEALLRKHKAF-EKALEAQLSRIDDLEKFAKDLLAE 90 (238)
Q Consensus 29 ~l~~l~~WL~~~e~~l~~~~~----------~-~~l~~ve~~l~~h~~l-~~~i~~~~~~v~~l~~~~~~L~~~ 90 (238)
.+..|+.-|..+|..+..... + +-+..+..+-.+-..| ...+.....++..|....+.|...
T Consensus 210 ~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~ 283 (388)
T PF04912_consen 210 RAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEK 283 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888999999999876211 1 1123344444444444 234566666777777776666543
No 74
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=20.11 E-value=2.9e+02 Score=18.63 Aligned_cols=71 Identities=8% Similarity=0.104 Sum_probs=38.3
Q ss_pred HHHHH-HHHHHHHHhhhhhHHhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy10628 164 KIQKH-AAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236 (238)
Q Consensus 164 ~l~kh-~~~~~ei~~~~~~v~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~r~~~L~~a~~~~q 236 (238)
+..-+ ..|...+.....++-.++..-=.......... .....+.+..+|+.+.+....--.+...++..+.
T Consensus 18 Fy~s~dp~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~--~~~~~~d~d~~~~~vvd~~D~LlEk~D~~LDe~~ 89 (91)
T PF08066_consen 18 FYRSFDPEFAESLDEQSQRLLSLINSLLKSAGSKSNIS--SPDDVDDVDERWDSVVDVNDSLLEKADISLDELT 89 (91)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CCCccccHHHHHHHHHHHHHHHHHHHhHHHHhHc
Confidence 34444 55666666666655444333222222111110 0014677888999998888777666666665443
Done!