RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10628
(238 letters)
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 121 bits (306), Expect = 2e-34
Identities = 61/197 (30%), Positives = 108/197 (54%), Gaps = 1/197 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
EA L ++D G+ L+ V LL+KH+ E + A R+ DL A L+ +D+S
Sbjct: 20 SEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQ 79
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
++ + + + R R+K + ARR +L ES ++ QF R+M + WI +K+ + + E Y R
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
D T +Q+ +KH E+ELAA++ + V G+ L EI+ RL + W++
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199
Query: 217 LQESSALKRERLSDAYQ 233
L++ +A + +RL ++ +
Sbjct: 200 LKQLAAARGQRLEESLE 216
Score = 62.6 bits (152), Expect = 4e-12
Identities = 19/111 (17%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 128 QMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVT 186
+ Q F + + W+ + + + A E Y +D ++ + ++KH E++++A++ R+ +
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 187 AEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237
++ +SL++ F +++K + + + +++++ +A +R +L+++++ +
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQF 114
Score = 45.7 bits (108), Expect = 3e-06
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 29/118 (24%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL 70
K+ ++++D G L+GV+ L +KHK E L
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEA-----------------------------EL 158
Query: 71 EAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQ 128
A I + K L ++ IQQRL + LK+ + AR +RL ES +
Sbjct: 159 AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 119 bits (301), Expect = 1e-32
Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 1/200 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
EA L ++D G+ L+ V LL+KH+ E + A R+ DL A L+ +D+S
Sbjct: 20 SEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQ 79
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
++ + + + R R+K + ARR +L ES ++ QF R+M + WI +K+ + + E Y R
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
D T +Q+ +KH E+ELAA++ + V G+ L EI+ RL + W++
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199
Query: 217 LQESSALKRERLSDAYQTQR 236
L++ +A + +RL ++ + Q+
Sbjct: 200 LKQLAAARGQRLEESLEYQQ 219
Score = 112 bits (282), Expect = 7e-30
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 1/195 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+ K+ ++++D G L+GV+ L +KHK E L A I + K L ++
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 185
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
IQQRL + LK+ + AR +RL ES + QQF+ N+ E WI +K + A E Y
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGD 245
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
+Q ++KH AFE++ +K RV V A GE LI + I ++ L+ +
Sbjct: 246 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSD 305
Query: 217 LQESSALKRERLSDA 231
L++++A ++ +L +
Sbjct: 306 LEKAAAQRKAKLDEN 320
Score = 63.7 bits (155), Expect = 3e-12
Identities = 19/110 (17%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 128 QMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVT 186
+ Q F + + W+ + + + A E Y +D ++ + ++KH E++++A++ R+ +
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 187 AEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
++ +SL++ F +++K + + + +++++ +A +R +L+++++ +
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ 113
Score = 62.2 bits (151), Expect = 1e-11
Identities = 20/90 (22%), Positives = 50/90 (55%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
K + ++D G++L+ ++ LL+KH+AFE R++D+ +DL+ ++++
Sbjct: 232 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 291
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESR 127
I +++ + + L++ + R+ +L E+
Sbjct: 292 ITAKMKGLKGKVSDLEKAAAQRKAKLDENS 321
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 115 bits (290), Expect = 4e-32
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 1/196 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+ K+ ++++D G L+GV+ L +KHK E L A I + K L ++
Sbjct: 17 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEE 76
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
IQQRL + LK+ + AR +RL ES + QQF+ N+ E WI +K + A E Y
Sbjct: 77 IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGD 136
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
+Q ++KH AFE++ +K RV V A GE LI + I ++ L+ +
Sbjct: 137 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSD 196
Query: 217 LQESSALKRERLSDAY 232
L++++A ++ +L +
Sbjct: 197 LEKAAAQRKAKLDENS 212
Score = 67.3 bits (164), Expect = 8e-14
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 129 MQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTA 187
+ QF R+M + WI +K+ + + E Y RD T +Q+ +KH E+ELAA++ + +V
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 188 EGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237
G+ L EI+ RL + W++L++ +A + +RL ++ + Q+
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQF 111
Score = 47.2 bits (112), Expect = 8e-07
Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 29/117 (24%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL 70
K + ++D G++L+ ++ LL+KH+AFE
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFETD-----------------------------F 155
Query: 71 EAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESR 127
R++D+ +DL+ ++++ I +++ + + L++ + R+ +L E+
Sbjct: 156 TVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 115 bits (290), Expect = 4e-32
Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 2/201 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEA-QLSRIDDLEKFAKDLLAEHHYDSS 96
KE ++ ++G+ V L K + F + A R+D++ F + L+ H +++
Sbjct: 18 SEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA 77
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYR 156
I + + L E R + L S + ++ E+ G I +K + ++
Sbjct: 78 TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGL 137
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGH-FAAAEIKTRLDELELEWR 215
D + +S + H AFE EL +V L + A I+ + E+ W+
Sbjct: 138 DASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQ 197
Query: 216 QLQESSALKRERLSDAYQTQR 236
L ++ A +R +L D R
Sbjct: 198 ALLDACAGRRTQLVDTADKFR 218
Score = 55.8 bits (134), Expect = 1e-09
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 129 MQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKS-RVGAVT 186
+ Q R ++ WI +K+ + + +D ++ K F E A RV V
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 187 AEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237
A E LI GH AA I D L W L E + + L+ +Y R+
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRY 113
Score = 45.0 bits (106), Expect = 5e-06
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 30/116 (25%)
Query: 17 NDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSR 76
+D+G S E+ R H AFE L +
Sbjct: 132 PEDVGLDASTAESFHRVHTAFER-----------------------------ELHLLGVQ 162
Query: 77 IDDLEKFAKDLLAEHHYDSSG-IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQ 131
+ + A L + + + IQ + Q V A L + RR +L+++ +
Sbjct: 163 VQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 111 bits (279), Expect = 4e-31
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 73 QLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQF 132
Q + +E +L + IQ+R Q V+ R KE R ++L +S +Q F
Sbjct: 6 QFPKETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVF 61
Query: 133 LRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESL 192
R+ ++G WI++K I D+SY DPTN+Q K QKH + E+E+ + + E
Sbjct: 62 KRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREER 121
Query: 193 ISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDA 231
+ GH A E K ++EL W L E + K ++L A
Sbjct: 122 FTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 53.8 bits (129), Expect = 2e-09
Identities = 13/81 (16%), Positives = 35/81 (43%)
Query: 46 NDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAV 105
D E + ++ +KH++ E ++ + + +LEK ++ H + ++ +
Sbjct: 80 TDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEEL 139
Query: 106 IARKDRLKETSTARRKRLIES 126
D L E + + +L+ +
Sbjct: 140 RHLWDLLLELTLEKGDQLLRA 160
Score = 28.7 bits (64), Expect = 0.95
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 179 KSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
+ V + G ++ A EI+ R E+ ++ +E A + ++L D+Y Q
Sbjct: 7 FPKETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQV 60
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 109 bits (274), Expect = 8e-30
Identities = 34/198 (17%), Positives = 82/198 (41%), Gaps = 2/198 (1%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLL-AEHHYDSS 96
+ + ++D+ ESL E LL++H + ++ +++ + ++ + +
Sbjct: 17 SITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYL 76
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICA-DESY 155
+ QRL+ + D L +R L + Q+F ++ + + ++ A E
Sbjct: 77 LLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPP 136
Query: 156 RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWR 215
++ I+K F + N+ +V + G L++ G+ + +IK ++ +E R
Sbjct: 137 DSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHR 196
Query: 216 QLQESSALKRERLSDAYQ 233
+ E + L D +
Sbjct: 197 KNNEKAQEASVLLRDNLE 214
Score = 56.8 bits (137), Expect = 4e-10
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
Query: 130 QQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAE 188
Q FL+++ + W+ Q+ A E + +Q+HA + E+ ++ V
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 189 GESLISG-GHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
GE +I G + RL+ L+ W L + L+ Q
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQE 111
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 109 bits (274), Expect = 8e-30
Identities = 47/189 (24%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+++D++ + ++G EALL +H+ ++A+ E+F + LLA HY S
Sbjct: 30 NGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPE 89
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
I+Q+L + + L++ RR L + ++Q F R+ + W+ ++ E
Sbjct: 90 IKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGD 149
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
++++ I+KH F+ + + ++ A+ A + LI+ GH+A +I +R +E+ WR+
Sbjct: 150 SLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRR 209
Query: 217 LQESSALKR 225
L+ KR
Sbjct: 210 LKAQMIEKR 218
Score = 71.9 bits (176), Expect = 2e-15
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 116 STARRKRLIESRQMQQFLRNMYEVGGWILQKQ-QICADESYRDPTNLQSKIQKHAAFESE 174
+S +Q+FL + ++ WI + + +DE +D T ++ +++H +E
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 175 LAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQT 234
+ A A G+ L++ GH+A+ EIK +LD L+ E L+++ +R L +
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 235 QR 236
Q
Sbjct: 122 QL 123
Score = 65.3 bits (159), Expect = 4e-13
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 37 FENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSS 96
+EAFLN +D G+SL VEAL++KH+ F+KA+ Q +I L+ FA L+A HY
Sbjct: 135 MAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 97 GIQQRLQAVIARKDRLKETSTARR 120
I R V+ R RLK +R
Sbjct: 195 DISSRRNEVLDRWRRLKAQMIEKR 218
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 106 bits (267), Expect = 2e-29
Identities = 61/135 (45%), Positives = 84/135 (62%)
Query: 94 DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADE 153
+ IQ+R Q V+ R R KE ST RR++L +S + Q F R+ E+ WI +K QI +DE
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 154 SYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELE 213
+Y+DPTNLQ K+QKH AFE+E+ AN + + G +IS GHFA+ I+TRL EL +
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQ 132
Query: 214 WRQLQESSALKRERL 228
W L E K +L
Sbjct: 133 WELLLEKMREKGIKL 147
Score = 56.0 bits (135), Expect = 3e-10
Identities = 19/95 (20%), Positives = 49/95 (51%)
Query: 31 LRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAE 90
+ + + ++ + +D+ + + ++ L+KH+AFE ++A I L++ +++E
Sbjct: 55 AEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISE 114
Query: 91 HHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIE 125
H+ S I+ RL + + + L E + +L++
Sbjct: 115 GHFASETIRTRLMELHRQWELLLEKMREKGIKLLQ 149
Score = 29.5 bits (66), Expect = 0.60
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 183 GAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
G++ G ++ A +I+ R ++ + + +E S L+R++L D+Y+ Q
Sbjct: 1 GSMDPSGVKVLE----TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQF 50
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 111 bits (278), Expect = 3e-29
Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 2/198 (1%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEA-QLSRIDDLEKFAKDLLAEHHYDSS 96
KE ++ ++G+ V L K + F + A R+D++ F + L+ H +++
Sbjct: 127 SEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA 186
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYR 156
I + + L E R + L S + ++ E+ G I +K + ++
Sbjct: 187 TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGL 246
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHF-AAAEIKTRLDELELEWR 215
D + +S + H AFE ++ +V L + A I+ + E+ W+
Sbjct: 247 DASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQ 306
Query: 216 QLQESSALKRERLSDAYQ 233
L ++ A +R +L D
Sbjct: 307 ALLDACAGRRTQLVDTAD 324
Score = 110 bits (276), Expect = 4e-29
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 2/199 (1%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
+E ++ +D+I + G +L++H ++A+E I L A+ LL+ H + I
Sbjct: 23 QELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQII 82
Query: 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDP 158
+ V LK+ + R+++L + Q R ++ WI +K+ + + +D
Sbjct: 83 RLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDF 142
Query: 159 TNLQSKIQKHAAFESEL-AANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQL 217
++ K F E A + RV V A E LI GH AA I D L W L
Sbjct: 143 DHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADL 202
Query: 218 QESSALKRERLSDAYQTQR 236
E + + L+ +Y R
Sbjct: 203 LELIDTRMQLLAASYDLHR 221
Score = 71.9 bits (176), Expect = 6e-15
Identities = 17/112 (15%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 125 ESRQMQQFLRNMYEVGGWILQKQ-QICADESYRDPTNLQSKIQKHAAFESELAANKSRVG 183
+ + QQ+ + E WI +++ + +DE +D +++H + + +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 184 AVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQ 235
+ + + L+S GH +I +++ + L++ + ++ +L + Y
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLF 113
Score = 39.2 bits (91), Expect = 7e-04
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 30/113 (26%)
Query: 17 NDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSR 76
+D+G S E+ R H AFE+ + +
Sbjct: 241 PEDVGLDASTAESFHRV-----------------------------HTAFERDVHLLGVQ 271
Query: 77 IDDLEKFAKDLLAEHHYDSSG-IQQRLQAVIARKDRLKETSTARRKRLIESRQ 128
+ + A L + + + IQ + Q V A L + RR +L+++
Sbjct: 272 VQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTAD 324
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 110 bits (277), Expect = 4e-29
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL-EAQLSRIDDLEKFAKDLLAEHHYDSS 96
+E + ++G+ V L + + F + R+D + A +L+ H D++
Sbjct: 23 AEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAA 82
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYR 156
I + + L E R + L S ++ +F + E+ G I K + +E R
Sbjct: 83 TIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGR 142
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLI-SGGHFAAAEIKTRLDELELEWR 215
D +++ + H FE ++ A ++V + + L + A +I+ R +E+ W+
Sbjct: 143 DQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWK 202
Query: 216 QLQESSALKRERLSDAYQTQR 236
L ++ +R RL D R
Sbjct: 203 SLLDACESRRVRLVDTGDKFR 223
Score = 104 bits (261), Expect = 6e-27
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 2/185 (1%)
Query: 46 NDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEH-HYDSSGIQQRLQA 104
+++G + VE L R H FE ++A +++ L++ A L A + + IQ+R
Sbjct: 137 PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENE 196
Query: 105 VIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQ-QICADESYRDPTNLQS 163
V+ L + +RR RL+++ +F + ++ W+ QI A E RD ++++
Sbjct: 197 VLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVEL 256
Query: 164 KIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSAL 223
+ H ++E+ A G+SL++ H+A+ EIK +L +L + +++ +
Sbjct: 257 LMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWED 316
Query: 224 KRERL 228
+ E L
Sbjct: 317 RWEWL 321
Score = 58.8 bits (142), Expect = 2e-10
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 125 ESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESEL-AANKSRV 182
++ Q R + ++ WI +++ + +D ++ ++ F + + RV
Sbjct: 4 MRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERV 63
Query: 183 GAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
V + LI+ GH AA I D L W L E + + L+ +Y+ +
Sbjct: 64 DTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHK 117
Score = 58.0 bits (140), Expect = 3e-10
Identities = 18/86 (20%), Positives = 38/86 (44%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
E+ + + +S VE L+ H+ + ++A+ + K LLA HY S
Sbjct: 236 EDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEE 295
Query: 98 IQQRLQAVIARKDRLKETSTARRKRL 123
I+++L + ++ + + R + L
Sbjct: 296 IKEKLLQLTEKRKEMIDKWEDRWEWL 321
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 103 bits (257), Expect = 3e-27
Identities = 33/194 (17%), Positives = 77/194 (39%), Gaps = 7/194 (3%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
E + ++ + G L VEA L H+ +++E ++I+ L
Sbjct: 22 EENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATR---GA 78
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
+ L + + +L +S AR + L + F+ + W+ +K++ +
Sbjct: 79 YRDCLGRLDLQYAKLLNSSKARLRSL---ESLHSFVAAATKELMWLNEKEEEEVGFDWSD 135
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
TN+ +K + ++A EL + ++ + G+ L+ H A +++ L+ +W
Sbjct: 136 RNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSW 195
Query: 217 LQESSALKRERLSD 230
+ + L +
Sbjct: 196 MLQLCCCIEAHLKE 209
Score = 62.3 bits (151), Expect = 4e-12
Identities = 16/89 (17%), Positives = 32/89 (35%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
KE D + + + A + A + LE + +I +L+ LL E H
Sbjct: 122 NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPT 181
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIES 126
++ A+ + + + L E+
Sbjct: 182 VESFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 50.0 bits (119), Expect = 1e-07
Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 127 RQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAV 185
LR + ++ W+ + Q + D ++++++ H + ++++
Sbjct: 5 ELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERA 64
Query: 186 TAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
++ L + L L+L++ +L SS + L +
Sbjct: 65 RSDEGQLSPATRG---AYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVA 112
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 101 bits (253), Expect = 2e-26
Identities = 33/194 (17%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+ + L+ + G L VE+ L HK +A+E S + + + + A
Sbjct: 37 DEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP---LKLS 93
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
+L + ++ +L TS + + L + F+ W+ +K++ +
Sbjct: 94 YTDKLHRLESQYAKLLNTSRNQERHL---DTLHNFVTRATNELIWLNEKEESEVAYDWSE 150
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
+++ K HA EL + + AV E L+ H A I+ ++ +W
Sbjct: 151 RNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSW 210
Query: 217 LQESSALKRERLSD 230
+ + + + +
Sbjct: 211 ILQLCQCVEQHIQE 224
Score = 50.4 bits (120), Expect = 8e-08
Identities = 12/130 (9%), Positives = 43/130 (33%), Gaps = 4/130 (3%)
Query: 108 RKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQ 166
+ ++++ + + ++ + ++ W+ + Q + D +++S ++
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 167 KHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRE 226
H + +S + + +L LE ++ +L +S +
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMT---APLKLSYTDKLHRLESQYAKLLNTSRNQER 117
Query: 227 RLSDAYQTQR 236
L +
Sbjct: 118 HLDTLHNFVT 127
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 95.4 bits (237), Expect = 1e-24
Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 1/163 (0%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
E+ + + +S VE L++ H+ +E + + + LL H S
Sbjct: 21 ESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEE 80
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
I+++LQ V++R+ + E AR +RL ++ QF R+ W++ ++ A +
Sbjct: 81 IREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGH 140
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFA 199
+++ I++H AFE A+ R A+ + A
Sbjct: 141 TVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQIA 183
Score = 72.6 bits (178), Expect = 5e-16
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 125 ESRQMQQFLRNMYEVGGWILQKQ-QICADESYRDPTNLQSKIQKHAAFESELAANKSRVG 183
+ +F ++ W+ QI E RD ++++ ++ H +E+
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 184 AVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
A GESL+ H A+ EI+ +L ++ +++ E + ERL + +
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQ 114
Score = 52.2 bits (125), Expect = 1e-08
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDS 95
+E +L + D G ++ VE L+++H+AFEK+ + R LEK L E
Sbjct: 127 IAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQIAE 184
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 94.0 bits (233), Expect = 2e-22
Identities = 30/200 (15%), Positives = 73/200 (36%), Gaps = 16/200 (8%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+ A ++ G L+ VE + H+ ++ ++D ++
Sbjct: 19 RQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIK------------ADLR 66
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY-R 156
+ + + + L + S R L RQ+Q ++ WI ++ +
Sbjct: 67 EKSAIYQLEEEYENLLKASFERMDHL---RQLQNIIQATSREIMWINDCEEEELLYDWSD 123
Query: 157 DPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQ 216
TN+ K + + S+L + + + E + L+ H A+ +I+ +D L+ +W
Sbjct: 124 KNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSW 183
Query: 217 LQESSALKRERLSDAYQTQR 236
+ + + L + +
Sbjct: 184 ILQITKCIDVHLKENAAYFQ 203
Score = 77.1 bits (189), Expect = 1e-16
Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 4/158 (2%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
E D + + + LE + ++ L++ + L+ H S I+
Sbjct: 112 CEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIE 171
Query: 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDP- 158
+ + + + + + L E+ QF ++ Q + D
Sbjct: 172 AYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKN 231
Query: 159 ---TNLQSKIQKHAAFESELAANKSRVGAVTAEGESLI 193
+L +I++ ++ K +V + + + ++
Sbjct: 232 MPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIV 269
Score = 47.0 bits (111), Expect = 2e-06
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 126 SRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGA 184
S + E GW+ Q++ ++ D +++ I H + + + ++
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDK 60
Query: 185 VTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQ 233
+ A+ K+ + +LE E+ L ++S + + L
Sbjct: 61 IKAD------------LREKSAIYQLEEEYENLLKASFERMDHLRQLQN 97
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 89.0 bits (220), Expect = 1e-21
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 17/217 (7%)
Query: 38 ENKEAFLNN-DDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSS 96
KE L D SL+ V ALLRKH+AFE L A R++ + A++L ++D+
Sbjct: 31 YGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAV 90
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQ--------FLRNMYEVGGWILQKQQ 148
+ R Q + + DRL + RR+ L ++ + F + W+ +
Sbjct: 91 NVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAME 150
Query: 149 ICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS-------GGHFAA 200
D +QS I H F++ L ++ A + +
Sbjct: 151 DLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSN 210
Query: 201 AEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237
+DEL +W ++++ ++ + L + Q
Sbjct: 211 PYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 60.5 bits (146), Expect = 3e-11
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 119 RRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYR--DPTNLQSKIQKHAAFESELA 176
RR +E ++F + W K+QI + Y T +++ ++KH AFES+LA
Sbjct: 7 RRLERLE-HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 177 ANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
A++ RV + A + L + A + R ++ +W +L + +RE L +
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 237 H 237
Sbjct: 126 T 126
Score = 48.1 bits (114), Expect = 6e-07
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 37 FENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLA------- 89
E L + I S+ +++L+ H+ F+ L + ++
Sbjct: 145 MEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNI 204
Query: 90 EHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQF 132
+ + + + D++K+ R + L E Q
Sbjct: 205 RISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 87.0 bits (215), Expect = 1e-20
Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 4/159 (2%)
Query: 40 KEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQ 99
KE D + + + A + A + LE + +I +L+ LL E H ++
Sbjct: 27 KEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVE 86
Query: 100 QRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQ----QICADESY 155
A+ + + + L E+ QF ++ E G + + Q + + +
Sbjct: 87 SFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRS 146
Query: 156 RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS 194
T L+ +Q + +L K + + ++++
Sbjct: 147 ATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQ 185
Score = 79.7 bits (196), Expect = 6e-18
Identities = 16/116 (13%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 122 RLIESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKS 180
+ + F+ + W+ +K++ + TN+ +K + ++A EL +
Sbjct: 3 HMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEK 62
Query: 181 RVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
++ + G+ L+ H A +++ L+ +W + + L + +
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQ 118
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 81.8 bits (202), Expect = 2e-20
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+EAFLN DD + VEAL++KH+ F+KA+ +I L+ A L+A++HY S+
Sbjct: 20 SAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNL 79
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIE 125
+ ++ + V+ R LKE +R RL +
Sbjct: 80 VDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 72.6 bits (178), Expect = 9e-17
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 125 ESRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVG 183
++ +Q ++R+ W+ ++ + N+++ I+KH F+ + ++ ++
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 184 AVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSD 230
A+ + LI+ H+A+ + + ++ WR L+E KR RL D
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 82.3 bits (202), Expect = 4e-18
Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 15/217 (6%)
Query: 37 FENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDL--------- 87
E L + I ++ ++ L H+ F+ L + ++
Sbjct: 501 MEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHV 560
Query: 88 -----LAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQM-QQFLRNMYEVGG 141
I + + V R + R ++ ++ +QF +G
Sbjct: 561 NMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGP 620
Query: 142 WILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAA 201
WI K + S L+ ++ +E + K ++ + + + + F
Sbjct: 621 WIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNK 680
Query: 202 EIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK 238
++ + + W QL + A + + T+ K
Sbjct: 681 HTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAK 717
Score = 66.9 bits (162), Expect = 6e-13
Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 16/227 (7%)
Query: 28 EALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDL 87
+A + + + D +LS ++ALL+KH+AFE L A R++ + A++L
Sbjct: 378 KASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQEL 437
Query: 88 LAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLRNMY--------EV 139
+YDS + R Q + + D L + RR+ L + ++ + + +Y
Sbjct: 438 NELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPF 497
Query: 140 GGWILQKQQICADESYRDP-TNLQSKIQKHAAFESELAANKSRVGAVTAE-------GES 191
W+ + D +Q H F++ L A+ ++
Sbjct: 498 NNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQT 557
Query: 192 LISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK 238
E+ +W +++ + + L + + Q+
Sbjct: 558 YHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQN 604
Score = 57.6 bits (138), Expect = 7e-10
Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 23/232 (9%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEA---FLNNDDIGESLSGVEALLRKHKAFE 67
+L N ++ ++ L + + + + + ++ LR
Sbjct: 269 TIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPA 328
Query: 68 KALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESR 127
D + AE Y ++ L I R +RL
Sbjct: 329 FMPSEGKMVSDINNAWGGLEQAEKGY-----EEWLLNEIRRLERLDHL------------ 371
Query: 128 QMQQFLRNMYEVGGWILQKQQICADESYR--DPTNLQSKIQKHAAFESELAANKSRVGAV 185
++F + W K+ + + Y + +++ ++KH AFES+LAA++ RV +
Sbjct: 372 -AEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQI 430
Query: 186 TAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRH 237
A + L ++ + + R ++ +W L + +RE L +
Sbjct: 431 AAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLET 482
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 79.2 bits (194), Expect = 3e-17
Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 15/214 (7%)
Query: 37 FENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDL-------EKFAKDLLA 89
E L + I S+ +++L+ H+ F+ L + EK +
Sbjct: 262 MEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNI 321
Query: 90 EHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQ--------QFLRNMYEVGG 141
+ + + + D++K+ R + L E Q QF +G
Sbjct: 322 RISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGP 381
Query: 142 WILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAA 201
WI K + A S + L+ ++ + +E + K+ + + + + + F
Sbjct: 382 WIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNK 441
Query: 202 EIKTRLDELELEWRQLQESSALKRERLSDAYQTQ 235
++ + + W L + A + T+
Sbjct: 442 HTNYTMEHIRVGWELLLTTIARTINEVETQILTR 475
Score = 69.1 bits (168), Expect = 8e-14
Identities = 46/227 (20%), Positives = 89/227 (39%), Gaps = 16/227 (7%)
Query: 28 EALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDL 87
+A + A+ ++ L D SL+ V ALLRKH+AFE L A R++ + A++L
Sbjct: 139 KASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQEL 198
Query: 88 LAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQ--------FLRNMYEV 139
++D+ + R Q + + DRL + RR+ L ++ + F +
Sbjct: 199 NELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPF 258
Query: 140 GGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS---- 194
W+ + D +QS I H F++ L ++ A +
Sbjct: 259 NNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQS 318
Query: 195 ---GGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK 238
+ +DEL +W ++++ ++ + L + Q
Sbjct: 319 YNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 365
Score = 57.2 bits (137), Expect = 8e-10
Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 17/228 (7%)
Query: 11 KEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL 70
+L N +++ ++ L + + K + + L K +
Sbjct: 30 TIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISN--- 86
Query: 71 EAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQ 130
+ D +G QRL+ + R +RL +
Sbjct: 87 ----------RPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERL--EHLAE 134
Query: 131 QFLRNMYEVGGWILQKQQICADESYR--DPTNLQSKIQKHAAFESELAANKSRVGAVTAE 188
+F + W K+QI + Y T +++ ++KH AFES+LAA++ RV + A
Sbjct: 135 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 194
Query: 189 GESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
+ L + A + R ++ +W +L + +RE L +
Sbjct: 195 AQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 242
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 53.2 bits (127), Expect = 9e-09
Identities = 25/201 (12%), Positives = 56/201 (27%), Gaps = 15/201 (7%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEK----ALEAQLSRIDDLEKFAKDLLAEHHY 93
+ A S +E L + F++ A EA +R + + + +
Sbjct: 28 RHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQL 87
Query: 94 DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQ--------FLRNMYEVGGWILQ 145
V +L R K+L + + + Q
Sbjct: 88 KVP-PGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQ 146
Query: 146 KQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKT 205
+ + Q+ E +L S + + + ++L G H ++
Sbjct: 147 ADALLQSDV--RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYR 204
Query: 206 RLDELELEWRQLQESSALKRE 226
R+ L ++ L+ +
Sbjct: 205 RVYRLHKRLVAIRTEYNLRLK 225
Score = 40.9 bits (95), Expect = 1e-04
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 51 ESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKD 110
L + ++ E+ L+ S I L + L H + +R+ + R
Sbjct: 155 VRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLV 214
Query: 111 RLKETSTARRKRLIESRQMQQ 131
++ T R + + Q
Sbjct: 215 AIR-TEYNLRLKAGVAAPATQ 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 44/269 (16%), Positives = 70/269 (26%), Gaps = 57/269 (21%)
Query: 2 NGDDGLSSLKEAFLNNDDIGESLSG-------VEALL-------RKH-KAFENKEAFL-- 44
N L I L LL K AF L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 45 -NNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAK-------DLLAEHHYDS- 95
+ + LS H + + L+ + K DL E +
Sbjct: 272 TRFKQVTDFLSAAT---TTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 96 ---SGIQQRLQAVIARKDRLKETSTARRKRLIES---RQMQQFLRNMYEVGGWILQKQ-Q 148
S I + ++ +A D K + + +IES R M++ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAH 386
Query: 149 ICADESYRDPTNLQSKI-QKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRL 207
I PT L S I + + NK SL+ E +
Sbjct: 387 I--------PTILLSLIWFDVIKSDVMVVVNKLH-------KYSLVEKQ---PKESTISI 428
Query: 208 DELELEWRQLQESSALKRERLSDAYQTQR 236
+ LE + E+ + D Y +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPK 457
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 67/218 (30%)
Query: 21 GESLSGVEALLRK--HKAFENKEAFL---NNDDI----G--ESLSGVEALLRKHKAFEKA 69
+ V+ + K K+ + N G +SL G+ LRK KA
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA-PSG 401
Query: 70 LEAQLSRIDDLE---KFAKDLLA----EH-HY---DSSGIQQRLQAV---IARKDRLK-- 113
L+ Q SRI E KF+ L H H S I + L KD ++
Sbjct: 402 LD-Q-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIP 458
Query: 114 --ETSTARRKRLIESRQMQQFLRNMYEVGGWILQK--QQICADESYRDPTNLQSKIQKHA 169
+T ++ + G I ++ I R P ++ Q A
Sbjct: 459 VYDTFDG---------------SDLRVLSGSISERIVDCII-----RLPVKWETTTQFKA 498
Query: 170 ----AFESELAANKSRVGAVTAE-----GESLISGGHF 198
F S +G +T G +I G
Sbjct: 499 THILDFG---PGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 30.8 bits (69), Expect = 0.45
Identities = 26/200 (13%), Positives = 51/200 (25%), Gaps = 82/200 (41%)
Query: 7 LSSLKEAFLNNDDIGESLSGVEALLRKHKAFENKEAFLNNDDIGESLSGVEALLRKHKAF 66
L+ + +L +DI H
Sbjct: 88 LTEFENCYLEGNDI-------------H-------------------------------- 102
Query: 67 EKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIES 126
AL A+L + +D L +++ + + +R L +L
Sbjct: 103 --ALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEGNAQL--- 156
Query: 127 RQMQQF------------LRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESE 174
+ F LR++Y ++Y + I+ A SE
Sbjct: 157 --VAIFGGQGNTDDYFEELRDLY---------------QTY--HVLVGDLIKFSAETLSE 197
Query: 175 LAANKSRVGAVTAEGESLIS 194
L V +G +++
Sbjct: 198 LIRTTLDAEKVFTQGLNILE 217
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 0.090
Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 11/191 (5%)
Query: 47 DDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDL---LAEHHYDSSGIQQRLQ 103
D + + L + L + + +L K ++E ++ Q
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 104 AVIARKDRLKETSTARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQS 163
+ K +L+ S+ +++ E + L+ LQ ++ N
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 164 KI----QKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQE 219
KI + + +L + K+ + L +KT L++ QE
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSE----ELEALKTELEDTLDTTATQQE 1172
Query: 220 SSALKRERLSD 230
+ D
Sbjct: 1173 LRGSDYKDDDD 1183
Score = 28.3 bits (63), Expect = 2.6
Identities = 29/190 (15%), Positives = 66/190 (34%), Gaps = 19/190 (10%)
Query: 56 VEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKET 115
++ + E LE+ DL + +++ + + K++ +
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE----EEKAKNLTKLKNKHESM 1040
Query: 116 STARRKRLIESRQMQQFLRNMY-EVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESE 174
+ RL + + +Q L + ++ G + A+ L++++ K E E
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ-AQIAELKAQLAKK---EEE 1096
Query: 175 LAANKSRVGAVTAEGESLISGGHFAAAEI----------KTRLDELELEWRQLQESSALK 224
L A +R+ T++ + + + I K ++ E + R L E
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 225 RERLSDAYQT 234
+ L D T
Sbjct: 1157 KTELEDTLDT 1166
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 31.3 bits (71), Expect = 0.28
Identities = 21/179 (11%), Positives = 52/179 (29%), Gaps = 19/179 (10%)
Query: 68 KALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIESR 127
AL + ++ A +++ + R R +++R
Sbjct: 176 DALVKDGEEVVKGQELAPGVVSRLDGVAL----------YRFPRRVRVEYVKKERAGLRL 225
Query: 128 QMQQFLRNMYEVGGWILQK-QQICADESYRDPT-----NLQSKIQKHAAFESELAANKSR 181
+ ++ G IL + + + + + + +A
Sbjct: 226 PLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLP 285
Query: 182 VGA--VTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQRHK 238
VG + GE + G A A+ R+ ++ Q++ + L+ + K
Sbjct: 286 VGMTPLVVHGEIVEKGQPLAEAKGLLRMPR-QVRAAQVEAEEEGETVYLTLFLEWTEPK 343
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 28.5 bits (63), Expect = 0.89
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 37 FENKEAFLNNDDIGESLSGVEALLRKHKAFEKAL---EAQLSRIDDLEKFAKDLLAEHHY 93
E+ L + I ++ +E L+ H F+ L + + I + K A+ + +H
Sbjct: 28 MESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHI 87
Query: 94 DSSGIQQ----RLQAVIARKDRLKETSTARRKRLIESRQMQQ 131
SG Q + ++ +++++ R L+E + QQ
Sbjct: 88 KLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEEQSKQQ 129
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 29.5 bits (67), Expect = 1.1
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 44 LNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEK 82
L +I L V +L + +E L ++ D+E+
Sbjct: 369 LKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIER 407
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 1.4
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 28/176 (15%)
Query: 56 VEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKET 115
+ L+K K +++E LE L Q+++ + K
Sbjct: 902 AKRELKKLKIEARSVERYKKLHIGLENKIMQL-----------QRKIDE---QNKEYKSL 947
Query: 116 STARRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESEL 175
I + LR+ E L+ + ++ + + + E+
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVE----RLRMSE----------EEAKNATNRVLSLQEEI 993
Query: 176 AANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDA 231
A + + E +++ E + + EL+ + L+ R+ D
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 28.9 bits (65), Expect = 1.4
Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 19/179 (10%)
Query: 56 VEALL----RKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDR 111
+EALL + HK E + Q+S +DL+K ++ + S +Q L V + +
Sbjct: 27 LEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANP 86
Query: 112 LKETSTARRKRLIESRQM--------QQFLRNMYEVGGWILQKQQICA---DESYRDPTN 160
A + + +R + ++I ++ ++ +
Sbjct: 87 PAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMS 146
Query: 161 LQSKIQKHAAFESELAANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQE 219
S + S A + ++ ++ L +LE + + Q+
Sbjct: 147 NPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLK----RVEPLRNELQKLEDDAKDNQQ 201
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin
polymerization, protein binding; 2.29A {Homo sapiens}
Length = 279
Score = 28.3 bits (62), Expect = 2.1
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 69 ALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAVIARKDRLKETSTARRKRLIE 125
+L + ++ L K+A+D+ E ++ R+ ++ R DRL + T + E
Sbjct: 33 SLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEE 89
>2lq3_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI:biology, protein structure
initiative; NMR {Synechococcus elongatus}
Length = 130
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 67 EKALEAQLSRIDDLEKFAKDLLAEHH 92
+ AL + DL+ A +L HH
Sbjct: 104 KSALR--YVSLADLQAHALPVLEHHH 127
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription;
2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Length = 194
Score = 27.0 bits (59), Expect = 5.1
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 132 FLRNMYEV-GGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRV 182
+L ++YE ++LQ Q I D + PT + +++ ++A NK ++
Sbjct: 29 YLFHLYEQCREFLLQVQTIAKDRGEKCPTKVTNQVFRYAKKSGASYINKPKM 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.347
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,588,702
Number of extensions: 214969
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 117
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)