RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10628
(238 letters)
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 80.2 bits (197), Expect = 2e-19
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Query: 80 LEKFAKDLLAEHHY-----DSSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQFLR 134
+E+F K+ + E + IQ+R Q V+ R KE R ++L +S +Q F R
Sbjct: 1 MEQFPKETVVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 60
Query: 135 NMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEGESLIS 194
+ ++G WI++K I D+SY DPTN+Q K QKH + E+E+ + + E +
Sbjct: 61 DADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 120
Query: 195 GGHFAAAEIKTRLDELELEWRQLQESSALKRERL 228
GH A E K ++EL W L E + K ++L
Sbjct: 121 MGHSAHEETKAHIEELRHLWDLLLELTLEKGDQL 154
Score = 45.9 bits (108), Expect = 6e-07
Identities = 13/80 (16%), Positives = 34/80 (42%)
Query: 46 NDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSGIQQRLQAV 105
D E + ++ +KH++ E ++ + + +LEK ++ H + ++ +
Sbjct: 77 TDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEEL 136
Query: 106 IARKDRLKETSTARRKRLIE 125
D L E + + +L+
Sbjct: 137 RHLWDLLLELTLEKGDQLLR 156
Score = 28.2 bits (62), Expect = 0.63
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 200 AAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQR 236
A EI+ R E+ ++ +E A + ++L D+Y Q
Sbjct: 21 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQV 57
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 71.2 bits (174), Expect = 1e-16
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 125 ESRQMQQFLRNMYEVGGWILQKQQICA-DESYRDPTNLQSKIQKHAAFESELAANKSRVG 183
++ +Q ++R+ W+ ++ D+ N+++ I+KH F+ + ++ ++
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 184 AVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSD 230
A+ + LI+ H+A+ + + ++ WR L+E KR RL D
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 65.8 bits (160), Expect = 1e-14
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+EAFLN DD + VEAL++KH+ F+KA+ +I L+ A L+A++HY S+
Sbjct: 20 SAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNL 79
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIE 125
+ ++ + V+ R LKE +R RL +
Sbjct: 80 VDEKRKQVLERWRHLKEGLIEKRSRLGD 107
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 69.6 bits (170), Expect = 4e-16
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 131 QFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEG 189
QF+ N+ E WI +K + A E Y +Q ++KH AFE++ +K RV V A G
Sbjct: 1 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG 60
Query: 190 ESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAY 232
E LI + I ++ L+ + L++++A ++ +L +
Sbjct: 61 EDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 103
Score = 65.8 bits (160), Expect = 1e-14
Identities = 20/89 (22%), Positives = 50/89 (56%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
K + ++D G++L+ ++ LL+KH+AFE R++D+ +DL+ ++++
Sbjct: 14 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 73
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIES 126
I +++ + + L++ + R+ +L E+
Sbjct: 74 ITAKMKGLKGKVSDLEKAAAQRKAKLDEN 102
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 68.5 bits (167), Expect = 8e-16
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 131 QFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAEG 189
QF R+M + WI +K+ + + E Y RD T +Q+ +KH E+ELAA++ + V G
Sbjct: 2 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTG 61
Query: 190 ESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERL 228
+ L EI+ RL + W++L++ +A + +RL
Sbjct: 62 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 100
Score = 63.1 bits (153), Expect = 9e-14
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+ K+ ++++D G L+GV+ L +KHK E L A I + K L ++
Sbjct: 15 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 74
Query: 98 IQQRLQAVIARKDRLKETSTARRKRL 123
IQQRL + LK+ + AR +RL
Sbjct: 75 IQQRLAQFVDHWKELKQLAAARGQRL 100
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 68.9 bits (168), Expect = 8e-16
Identities = 19/109 (17%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 126 SRQMQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGA 184
+ + Q F + + W+ + + + A E Y +D ++ + ++KH E++++A++ R+
Sbjct: 1 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 60
Query: 185 VTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQ 233
+ ++ +SL++ F +++K + + + +++++ +A +R +L+++++
Sbjct: 61 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 109
Score = 64.3 bits (156), Expect = 4e-14
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
EA L ++D G+ L+ V LL+KH+ E + A R+ DL A L+ +D+S
Sbjct: 19 SEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQ 78
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIESRQM 129
++ + + + R R+K + ARR +L ES ++
Sbjct: 79 VKDKRETINGRFQRIKSMAAARRAKLNESHRL 110
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 67.3 bits (164), Expect = 4e-15
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 119 RRKRLIESRQMQQFLRNMYEVGGWILQKQQICADESY--RDPTNLQSKIQKHAAFESELA 176
R +RL ++F + W K+QI + Y T +++ ++KH AFES+LA
Sbjct: 8 RLERL--EHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 177 ANKSRVGAVTAEGESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQ 233
A++ RV + A + L + A + R ++ +W +L + +RE L +
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEK 122
Score = 61.9 bits (150), Expect = 5e-13
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 38 ENKEAFLNNDD-IGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSS 96
KE L D SL+ V ALLRKH+AFE L A R++ + A++L ++D+
Sbjct: 31 YGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAV 90
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIESRQ 128
+ R Q + + DRL + RR+ L +
Sbjct: 91 NVNDRCQKICDQWDRLGTLTQKRREALERMEK 122
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 66.6 bits (162), Expect = 7e-15
Identities = 16/106 (15%), Positives = 39/106 (36%)
Query: 130 QQFLRNMYEVGGWILQKQQICADESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAEG 189
+QF +G WI K + A S + L+ ++ + +E + K+ + + +
Sbjct: 8 RQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDH 67
Query: 190 ESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDAYQTQ 235
+ + F ++ + + W L + A + T+
Sbjct: 68 QLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTR 113
Score = 50.8 bits (121), Expect = 4e-09
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
+NK + + +E + + K +E + + ID LE + + +D+
Sbjct: 22 QNKMEEIA-RSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKH 80
Query: 98 IQQRLQAVIARKDRLKETSTARRKRL 123
++ + + L T +
Sbjct: 81 TNYTMEHIRVGWELLLTTIARTINEV 106
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 62.5 bits (151), Expect = 2e-13
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 130 QQFLRNMYEVGGWILQKQQICA-DESYRDPTNLQSKIQKHAAFESELAANKSRVGAVTAE 188
Q+F ++ + + ++ A E ++ I+K F + N+ +V +
Sbjct: 3 QEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDS 62
Query: 189 GESLISGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSD 230
G L++ G+ + +IK ++ +E R+ E + L D
Sbjct: 63 GNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRD 104
Score = 57.4 bits (138), Expect = 1e-11
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYDSSG 97
N+E L + + +SL EA +RK + F ++E ++ L+AE + S
Sbjct: 17 SNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDK 76
Query: 98 IQQRLQAVIARKDRLKETSTARRKRLIES 126
I++++Q + R + E + L ++
Sbjct: 77 IKEKVQLIEDRHRKNNEKAQEASVLLRDN 105
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 54.0 bits (129), Expect = 2e-10
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 130 QQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTAE 188
Q FL+++ + W+ Q+ A E + +Q+HA + E+ ++ V
Sbjct: 2 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 61
Query: 189 GESLI-SGGHFAAAEIKTRLDELELEWRQLQESSALKRERLSDA 231
GE +I + RL+ L+ W L + L+
Sbjct: 62 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQC 105
Score = 47.0 bits (111), Expect = 7e-08
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLL-AEHHYDSS 96
+ + ++D+ ESL E LL++H + ++ +++ + ++ + +
Sbjct: 16 SITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYL 75
Query: 97 GIQQRLQAVIARKDRLKETSTARRKRLIES 126
+ QRL+ + D L +R L +
Sbjct: 76 LLGQRLEGLDTGWDALGRMWESRSHTLAQC 105
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 50.5 bits (120), Expect = 6e-09
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 38 ENKEAFLNNDDIGESLSGVEALLRKHKAFEKALEAQLSRIDDLEKFAKDLLAEHHYD--- 94
E L + I S+ +++L+ H+ F+ L + ++
Sbjct: 22 EGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIR 81
Query: 95 ----SSGIQQRLQAVIARKDRLKETSTARRKRLIESRQMQQF 132
+ + + + D++K+ R + L E Q
Sbjct: 82 ISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 123
Score = 49.0 bits (116), Expect = 2e-08
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 129 MQQFLRNMYEVGGWILQKQQICADESY-RDPTNLQSKIQKHAAFESELAANKSRVGAVTA 187
+F + W+ + D +QS I H F++ L ++ A
Sbjct: 7 HLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMA 66
Query: 188 EGESLISGGHFAAAEIKTR-------LDELELEWRQLQESSALKRERLSDAYQTQ 235
+ I + +DEL +W ++++ ++ + L + Q
Sbjct: 67 IQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQ 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.347
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 827,243
Number of extensions: 36795
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 30
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)