Query psy10634
Match_columns 303
No_of_seqs 216 out of 1193
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:30:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 7.8E-35 1.7E-39 299.7 27.6 252 16-297 531-814 (2473)
2 KOG0517|consensus 100.0 3.9E-33 8.5E-38 287.2 29.4 257 17-302 1386-1670(2473)
3 KOG0040|consensus 99.9 2.2E-25 4.8E-30 226.9 23.8 269 5-302 42-339 (2399)
4 KOG0040|consensus 99.9 1.7E-22 3.8E-27 206.1 24.3 217 56-302 17-233 (2399)
5 cd00176 SPEC Spectrin repeats, 99.9 5.7E-20 1.2E-24 158.8 24.3 189 85-302 2-191 (213)
6 smart00150 SPEC Spectrin repea 99.6 1.6E-14 3.5E-19 110.5 11.8 100 87-186 2-101 (101)
7 cd00176 SPEC Spectrin repeats, 99.6 2.7E-13 5.8E-18 116.9 20.3 172 17-188 11-212 (213)
8 PF00435 Spectrin: Spectrin re 99.5 2.5E-13 5.4E-18 104.3 13.6 104 84-187 2-105 (105)
9 smart00150 SPEC Spectrin repea 99.1 7.9E-10 1.7E-14 84.2 10.1 81 222-302 2-82 (101)
10 KOG4286|consensus 99.0 6.6E-08 1.4E-12 95.6 23.2 201 60-288 75-299 (966)
11 PF00435 Spectrin: Spectrin re 99.0 3.3E-09 7.1E-14 81.1 10.3 83 220-302 3-85 (105)
12 KOG0516|consensus 98.4 2.3E-05 5E-10 84.0 18.8 194 60-285 178-374 (1047)
13 KOG4286|consensus 98.2 2E-05 4.3E-10 78.5 13.6 168 85-289 3-171 (966)
14 KOG4240|consensus 98.1 0.00022 4.7E-09 74.1 18.8 236 67-302 259-578 (1025)
15 KOG0035|consensus 96.5 0.0017 3.7E-08 67.0 2.7 162 84-266 395-557 (890)
16 KOG4240|consensus 90.3 7.7 0.00017 41.4 14.1 121 153-302 239-361 (1025)
17 PF12128 DUF3584: Protein of u 71.8 1.7E+02 0.0037 32.6 16.3 153 93-284 226-378 (1201)
18 PF07426 Dynactin_p22: Dynacti 59.8 1.1E+02 0.0024 26.0 15.1 90 194-286 68-161 (174)
19 smart00787 Spc7 Spc7 kinetocho 49.0 2.3E+02 0.0049 26.4 13.3 181 84-286 64-253 (312)
20 PF04136 Sec34: Sec34-like fam 46.4 1.7E+02 0.0037 24.3 14.6 64 223-287 74-140 (157)
21 PF06008 Laminin_I: Laminin Do 45.7 2.2E+02 0.0049 25.5 20.3 64 222-287 189-252 (264)
22 KOG0933|consensus 45.4 4.4E+02 0.0096 28.8 22.6 181 7-188 596-813 (1174)
23 PF11802 CENP-K: Centromere-as 45.3 2.4E+02 0.0052 25.7 16.5 121 90-245 23-147 (268)
24 PRK14127 cell division protein 44.8 1.5E+02 0.0033 23.2 7.8 47 256-302 42-97 (109)
25 KOG0976|consensus 41.7 4.6E+02 0.01 27.9 23.0 109 57-186 82-190 (1265)
26 PRK11546 zraP zinc resistance 40.6 1.8E+02 0.004 23.9 7.5 54 248-301 44-97 (143)
27 PF03993 DUF349: Domain of Unk 38.9 1.4E+02 0.0029 21.0 7.1 47 127-175 24-70 (77)
28 PF12325 TMF_TATA_bd: TATA ele 37.5 2.1E+02 0.0045 22.7 11.1 79 109-187 9-100 (120)
29 PRK11546 zraP zinc resistance 36.6 2.4E+02 0.0052 23.2 10.9 62 116-177 47-108 (143)
30 PF03993 DUF349: Domain of Unk 35.5 1.6E+02 0.0034 20.7 7.0 66 60-126 2-67 (77)
31 TIGR02449 conserved hypothetic 35.5 1.3E+02 0.0029 21.2 5.2 51 117-167 8-58 (65)
32 KOG0035|consensus 32.5 28 0.0006 36.9 2.0 138 56-193 474-624 (890)
33 PF13949 ALIX_LYPXL_bnd: ALIX 31.4 3.9E+02 0.0085 24.0 19.5 128 56-193 141-272 (296)
34 PF13801 Metal_resist: Heavy-m 30.5 2.3E+02 0.005 21.1 7.5 54 248-301 42-95 (125)
35 KOG0994|consensus 30.2 8.3E+02 0.018 27.4 22.0 33 157-189 1656-1688(1758)
36 PF04912 Dynamitin: Dynamitin 29.9 5E+02 0.011 24.8 14.6 37 116-152 246-283 (388)
37 KOG0516|consensus 27.6 8.5E+02 0.018 26.7 13.8 75 223-297 203-277 (1047)
38 PRK10869 recombination and rep 26.9 6.7E+02 0.014 25.3 20.7 46 60-108 154-199 (553)
39 PF14223 UBN2: gag-polypeptide 25.8 2.5E+02 0.0055 21.4 6.1 70 112-181 16-91 (119)
40 KOG0994|consensus 25.4 1E+03 0.022 26.8 21.9 21 109-129 1504-1524(1758)
41 PRK04863 mukB cell division pr 25.0 1.1E+03 0.024 27.2 23.0 77 112-188 931-1018(1486)
42 PF13801 Metal_resist: Heavy-m 24.6 3E+02 0.0065 20.5 10.4 66 116-181 45-110 (125)
43 PF11616 EZH2_WD-Binding: WD r 23.4 1.3E+02 0.0028 17.8 2.8 19 157-175 8-26 (30)
44 TIGR00634 recN DNA repair prot 22.4 8E+02 0.017 24.7 22.8 55 223-279 320-374 (563)
45 PF04065 Not3: Not1 N-terminal 21.5 5.9E+02 0.013 22.7 8.2 82 56-138 19-103 (233)
46 KOG2856|consensus 21.5 7.4E+02 0.016 23.9 15.0 118 58-189 123-240 (472)
47 TIGR02449 conserved hypothetic 21.4 3E+02 0.0066 19.4 5.1 49 252-300 8-56 (65)
No 1
>KOG0517|consensus
Probab=100.00 E-value=7.8e-35 Score=299.67 Aligned_cols=252 Identities=27% Similarity=0.448 Sum_probs=233.4
Q ss_pred HHHhhchhhhhhhhcccccchHHHH--HHH--HHHH-hh----------------hhhcc-h----------hhhhhHHH
Q psy10634 16 VRSVHSLDGVSHIVYSVVLGKTIMT--KLL--HKLV-VD----------------IFLMY-K----------TSCFFPFH 63 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~l~~--~ll--~~~~-~~----------------~~~~~-~----------~~~~~l~~ 63 (303)
..+++||++++..+-|.+||++|++ +|| |.++ ++ .|..+ + .++..|..
T Consensus 531 ~~~~d~meElk~~l~S~d~GkHL~gVedLLQkH~LlEadIn~~gerv~~~~a~a~~f~~~~~~~~cdp~vi~~R~~~le~ 610 (2473)
T KOG0517|consen 531 LYTSDWMEELKQQLLSRDVGKHLLGVEDLLQKHDLLEADINAQGERVKALNAQALRFDSPKEYKPCDPQVIQERVAHLEQ 610 (2473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999976 888 6664 22 22221 0 57889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q psy10634 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALA 143 (303)
Q Consensus 64 ~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~ 143 (303)
.|.+|++++..||..|++++.+++|+++|.++++||.+++..+++.+.|.|++.|..++.+|++|+.++.+|.+....+.
T Consensus 611 ~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~~~~ 690 (2473)
T KOG0517|consen 611 CYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAHLKQMI 690 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHH
Q psy10634 144 SRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQF 223 (303)
Q Consensus 144 ~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF 223 (303)
..|+.|+..+||+++.|+.++.+++.+|+.|..++..|.++|.+|..+|| |
T Consensus 691 ~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~Q-----------------------------f 741 (2473)
T KOG0517|consen 691 REGEELVAEGHPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQ-----------------------------F 741 (2473)
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------H
Confidence 99999999999999999999999999999999999999999999999888 9
Q ss_pred HHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHH
Q psy10634 224 YAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISK 297 (303)
Q Consensus 224 ~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~ 297 (303)
+.|++++.+||.++...+++.++|.|..+++.|+++|.+++.+|.+|...|..|.+++..|.+. .+..|+|..
T Consensus 742 faDAdd~~sWl~d~~rlvss~d~G~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~-~~e~p~V~~ 814 (2473)
T KOG0517|consen 742 FADADDAESWLRDALRLVSSEDVGHDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQE-SPEGPEVRQ 814 (2473)
T ss_pred hccHHHHHHHHHHHHHhccchhcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-cCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999766 445555555
No 2
>KOG0517|consensus
Probab=100.00 E-value=3.9e-33 Score=287.23 Aligned_cols=257 Identities=35% Similarity=0.569 Sum_probs=238.8
Q ss_pred HHhhchhhhhhhhcccccchHHHH--HHH--HHHH-----------hhhhhcch-------------hhhhhHHHHHHHH
Q psy10634 17 RSVHSLDGVSHIVYSVVLGKTIMT--KLL--HKLV-----------VDIFLMYK-------------TSCFFPFHRYRSL 68 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~l~~--~ll--~~~~-----------~~~~~~~~-------------~~~~~l~~~~~~L 68 (303)
++=.|+++++.+|.+.++|+||-+ .++ |+.+ +....+.. +....+..+|..|
T Consensus 1386 D~~~~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~~~v~~Rf~~L 1465 (2473)
T KOG0517|consen 1386 DAKKKLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETTLAVLERFEDL 1465 (2473)
T ss_pred HHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHHHHHHHHHHHH
Confidence 566899999999999999999865 444 3322 22221111 4566789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10634 69 QEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQ 148 (303)
Q Consensus 69 ~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~ 148 (303)
+.+...|+..|+.+..+++|.+++++++.||.|+.|.+++.++|.++.+++.+.++|+.+++||.+|+++|+.|...|+.
T Consensus 1466 ~~Pl~~R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~gq~ 1545 (2473)
T KOG0517|consen 1466 LGPLQERRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLERGQS 1545 (2473)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHH
Q psy10634 149 MSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVA 228 (303)
Q Consensus 149 L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~ 228 (303)
|+..+||+++.|...+..|.+.|+.|...|..|.+.|..+..++| |+-||.
T Consensus 1546 Li~~~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQ-----------------------------Y~fDaa 1596 (2473)
T KOG0517|consen 1546 LIDSGHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQ-----------------------------YYFDAA 1596 (2473)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHhhHH
Confidence 999999999999999999999999999999999999999999998 999999
Q ss_pred HHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHhhhc
Q psy10634 229 EAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNT 302 (303)
Q Consensus 229 e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~~~ 302 (303)
++++||.+++.++.|.++|+|..++..++++|+.++.++..|..+|..|-..|..|+..+||++..|..|+++|
T Consensus 1597 E~EaWm~Eqel~m~see~gkDE~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~ql 1670 (2473)
T KOG0517|consen 1597 EAEAWMGEQELYMMSEEYGKDEDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQSQL 1670 (2473)
T ss_pred HHHHHHhhhHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998775
No 3
>KOG0040|consensus
Probab=99.94 E-value=2.2e-25 Score=226.88 Aligned_cols=269 Identities=28% Similarity=0.374 Sum_probs=233.4
Q ss_pred cccccchhhhHH-HHhhchhhhhhhhcccccchHH-HH-HHH-HHHH-----------------------hhhhhcch--
Q psy10634 5 ESLGFSNVAWQV-RSVHSLDGVSHIVYSVVLGKTI-MT-KLL-HKLV-----------------------VDIFLMYK-- 55 (303)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l-~~-~ll-~~~~-----------------------~~~~~~~~-- 55 (303)
+|.-|--|.=+- ++-.||-++........|-.-. +. .+- |+.+ .+||.+.+
T Consensus 42 ds~~~q~fkrdadel~~wi~ekl~~~~~~~y~dptnlq~k~qkhqa~eaevqa~s~~i~~ld~t~~~~~~~~h~a~e~~~ 121 (2399)
T KOG0040|consen 42 DSYRFQYFKRDADELEKWIMEKLQIASDESYRDPTNLQGKIQKHQAFEAEVQAHSRAIVELDKTGNEMITMGHFASEEIK 121 (2399)
T ss_pred HhHHHHHHhcCHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcccchhHHHH
Confidence 344455555554 3447888888777666663211 11 111 3222 12222222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhch
Q psy10634 56 TSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASR 135 (303)
Q Consensus 56 ~~~~~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~ 135 (303)
.++.+|...|+-|+.....+.-+|.+++.+.+|++.|.+++.||.+++..+.+.+.|.|+..|+.++++|..|+.++.+|
T Consensus 122 ~~l~el~~lw~~l~~~~~ekg~kl~~al~~~q~~~~c~~i~~wi~dke~~~t~~e~g~d~e~~evl~~kf~~f~~~~~~~ 201 (2399)
T KOG0040|consen 122 ARLEELHHLWDLLLEKLLEKGIKLLQALKLVQYLRECEDILEWIGDKEAIVTSEELGQDLEHVEVLQKKFEDFQKELAAH 201 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchheeeHHHhcccHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhh
Q psy10634 136 EPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTK 215 (303)
Q Consensus 136 ~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~ 215 (303)
+.+|+.|+.-|+.|++.+||..+.|..+.+.++..|+.|..++..|...|-.|...++
T Consensus 202 e~rv~evnq~a~~~~~e~h~e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~a~~~qr---------------------- 259 (2399)
T KOG0040|consen 202 EYRVNEVNQYADKLVEEGHPELDLIQKKQDEVNAAWQRLKGLALQRQEKLFGAAEVQR---------------------- 259 (2399)
T ss_pred hHhHHHHHHHHHHHHHcCCCchHHHHHhHHHHHHHHHHHHHHHHHHHHhhccHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHH
Q psy10634 216 HSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNI 295 (303)
Q Consensus 216 ~~~~~~qF~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I 295 (303)
|.+|++++..||.+++..++|.+||+|+.+++.|+++|+.++.++.+.+..|..|...+..|...-+.+++.|
T Consensus 260 -------f~rd~~et~~wi~ek~~~l~sddygrdl~~~q~l~~~h~g~erdla~l~~kv~~l~~~a~~l~~~hp~~a~qi 332 (2399)
T KOG0040|consen 260 -------FNRDVDETIAWIKEKEPVLSSDDYGRDLASVQALQRKHEGLERDLAALEDKVKELCAEAEKLTLSHPDDAPQI 332 (2399)
T ss_pred -------hcccHHHHHHHHhhccccccccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987766679999
Q ss_pred HHHhhhc
Q psy10634 296 SKKQVNT 302 (303)
Q Consensus 296 ~~~~~~~ 302 (303)
+.+.+.+
T Consensus 333 ~~~~~~~ 339 (2399)
T KOG0040|consen 333 QEKKEDL 339 (2399)
T ss_pred HHHHHHH
Confidence 8876543
No 4
>KOG0040|consensus
Probab=99.91 E-value=1.7e-22 Score=206.07 Aligned_cols=217 Identities=26% Similarity=0.409 Sum_probs=207.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhch
Q psy10634 56 TSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASR 135 (303)
Q Consensus 56 ~~~~~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~ 135 (303)
++..++..+|..+...+..|+.+|+.++.++-|-++++++..||.++-..++...+ .|+++++....+|+.|+.++.+|
T Consensus 17 errq~vl~~y~~fk~~~~~~~~kleds~~~q~fkrdadel~~wi~ekl~~~~~~~y-~dptnlq~k~qkhqa~eaevqa~ 95 (2399)
T KOG0040|consen 17 ERRQEVLTRYQSFKERSAERRQKLEDSYRFQYFKRDADELEKWIMEKLQIASDESY-RDPTNLQGKIQKHQAFEAEVQAH 95 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHhhhhccc-CCchhHHHHHHHHHHHHHHHHHh
Confidence 56778889999999999999999999999999999999999999999888776555 68899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhh
Q psy10634 136 EPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTK 215 (303)
Q Consensus 136 ~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~ 215 (303)
...+..+...|..++..+|++++.|+.++++|...|.-|...+....-.|..|+.+.+
T Consensus 96 s~~i~~ld~t~~~~~~~~h~a~e~~~~~l~el~~lw~~l~~~~~ekg~kl~~al~~~q---------------------- 153 (2399)
T KOG0040|consen 96 SRAIVELDKTGNEMITMGHFASEEIKARLEELHHLWDLLLEKLLEKGIKLLQALKLVQ---------------------- 153 (2399)
T ss_pred hhHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHH
Q psy10634 216 HSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNI 295 (303)
Q Consensus 216 ~~~~~~qF~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I 295 (303)
|...|+++..||.+++..+-+.++|.|.+.++.|.+++++|+.++.+++.+|..+++.+..|+..|||+-+.|
T Consensus 154 -------~~~~c~~i~~wi~dke~~~t~~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~e~h~e~~~i 226 (2399)
T KOG0040|consen 154 -------YLRECEDILEWIGDKEAIVTSEELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVNQYADKLVEEGHPELDLI 226 (2399)
T ss_pred -------HHHHHHHHHHHhccchheeeHHHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHcCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy10634 296 SKKQVNT 302 (303)
Q Consensus 296 ~~~~~~~ 302 (303)
..+.+.|
T Consensus 227 ~~k~~ev 233 (2399)
T KOG0040|consen 227 QKKQDEV 233 (2399)
T ss_pred HHhHHHH
Confidence 9998765
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.87 E-value=5.7e-20 Score=158.82 Aligned_cols=189 Identities=40% Similarity=0.580 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy10634 85 LYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGAT 164 (303)
Q Consensus 85 l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~ 164 (303)
+..|..++..+..||.+.+..+.+...+.++..++.++++|+.|..++..+.+.++.++..|+.|+..+++.+..|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 57899999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhcCC
Q psy10634 165 SALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSS 244 (303)
Q Consensus 165 ~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~s~ 244 (303)
+.|+.+|..|.+.+.+|...|+.+...++ |+.++.++..||.+.+..+...
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~-----------------------------~~~~~~~l~~wl~~~e~~l~~~ 132 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQ-----------------------------FFRDADDLEQWLEEKEAALASE 132 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999998877 7778888999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCh-hHHHHHhhhc
Q psy10634 245 DFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDS-KNISKKQVNT 302 (303)
Q Consensus 245 ~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~-~~I~~~~~~~ 302 (303)
+.+.+++.++.++..|+.|..++..+...+..+...|..|++.++++. ..|..++.++
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l 191 (213)
T cd00176 133 DLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEEL 191 (213)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 665699999999999999999999999999999999999999998765 7788877765
No 6
>smart00150 SPEC Spectrin repeats.
Probab=99.59 E-value=1.6e-14 Score=110.50 Aligned_cols=100 Identities=41% Similarity=0.578 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy10634 87 QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSA 166 (303)
Q Consensus 87 ~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~ 166 (303)
.|..++.++..||.+++..+...++|.++..++.++++|+.|+.++..+++.|..++..|+.|+..+|++++.|..+++.
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 69999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10634 167 LQDKLASLRNAASVRRLRLL 186 (303)
Q Consensus 167 L~~~W~~L~~l~~~r~~~L~ 186 (303)
|+.+|..|+..+.+|...|+
T Consensus 82 l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 82 LNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998873
No 7
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.59 E-value=2.7e-13 Score=116.95 Aligned_cols=172 Identities=32% Similarity=0.417 Sum_probs=147.3
Q ss_pred HHhhchhhhhhhhcccccchHHHH--HHH--HHHH-----------------hhhhhcc---h-----hhhhhHHHHHHH
Q psy10634 17 RSVHSLDGVSHIVYSVVLGKTIMT--KLL--HKLV-----------------VDIFLMY---K-----TSCFFPFHRYRS 67 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~l~~--~ll--~~~~-----------------~~~~~~~---~-----~~~~~l~~~~~~ 67 (303)
..+.||.+....|.+..++.++.. .++ |+.+ ++.+... . ..+..|+.+|..
T Consensus 11 ~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~ 90 (213)
T cd00176 11 ELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEE 90 (213)
T ss_pred HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 567999999999999999986522 333 2222 1111110 0 577899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy10634 68 LQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAK 147 (303)
Q Consensus 68 L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~ 147 (303)
|+..+..|...|+.+...+.|++.+..+..||.+.+..+...+++.+...++.++..|+.|..++..+.+.+..+...|.
T Consensus 91 l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (213)
T cd00176 91 LRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAE 170 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 99999999999999998889999988899999999999887777778999999999999999999999999999999999
Q ss_pred HHhhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 148 QMSRSAHFAA-ARIEGATSALQDKLASLRNAASVRRLRLLDA 188 (303)
Q Consensus 148 ~L~~~~h~~~-~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a 188 (303)
.|+...+++. ..|...++.|..+|..|...+..|...|..+
T Consensus 171 ~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 171 ELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988776 8999999999999999999999999999764
No 8
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.53 E-value=2.5e-13 Score=104.31 Aligned_cols=104 Identities=26% Similarity=0.414 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q psy10634 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGA 163 (303)
Q Consensus 84 ~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~ 163 (303)
.+++|...++++..||.+.+..+...+.|.++..++.++++|+.|+.++..+.+.++.|...|..|+..+|++++.|..+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 47899999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 164 TSALQDKLASLRNAASVRRLRLLD 187 (303)
Q Consensus 164 ~~~L~~~W~~L~~l~~~r~~~L~~ 187 (303)
+..|+.+|..|...+..|...|++
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999974
No 9
>smart00150 SPEC Spectrin repeats.
Probab=99.10 E-value=7.9e-10 Score=84.22 Aligned_cols=81 Identities=37% Similarity=0.598 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHhhh
Q psy10634 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVN 301 (303)
Q Consensus 222 qF~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~~ 301 (303)
+|..++.++..||.+++..+.+.++|.|+..++.++++|+.|+.++..++..|..+...|+.|+..+|++++.|..++..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 49999999999999999999888899999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q psy10634 302 T 302 (303)
Q Consensus 302 ~ 302 (303)
|
T Consensus 82 l 82 (101)
T smart00150 82 L 82 (101)
T ss_pred H
Confidence 5
No 10
>KOG4286|consensus
Probab=99.05 E-value=6.6e-08 Score=95.59 Aligned_cols=201 Identities=18% Similarity=0.276 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhhc-ccCCCCCHHHHHHHHHHHHHHHHHHhchHH
Q psy10634 60 FPFHRYRSLQEPMQIRRDNLEDAL-LLYQYLRDVDDEMQWLLEKEPLAV-STDLGNSLTAVQSLQKKHQALETELASREP 137 (303)
Q Consensus 60 ~l~~~~~~L~~~~~~R~~~Le~~~-~l~~f~~~~~~~~~Wl~e~e~~~~-~~d~g~~l~~v~~l~~~h~~~~~el~~~~~ 137 (303)
..+.+|.+|.+.+..-+.+|+.+- ...++.-.+.+++.|++-|-+.++ ..++|.|+..|+..-.-|+.|+.|+..+++
T Consensus 75 ~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~ 154 (966)
T KOG4286|consen 75 LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEP 154 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhccc
Confidence 588999999999999999999987 466888889999999999987764 679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10634 138 VVSALASRAKQMSRSAHFA--------------------AARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLA 197 (303)
Q Consensus 138 ~v~~l~~~g~~L~~~~h~~--------------------~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~ 197 (303)
.|.++.+.|..++...+.. +.-+....+.++..|..|...+....++.+.+++..+
T Consensus 155 ~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~---- 230 (966)
T KOG4286|consen 155 VIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQ---- 230 (966)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH----
Confidence 9999999999887543211 1233444578899999999999999999999986544
Q ss_pred hchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhcC-CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 198 SGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHS-SDFGR-DEDSVLSLIKKLESLERELVSFQHTVG 275 (303)
Q Consensus 198 ~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~s-~~~g~-d~~~~~~ll~~h~~le~el~~~~~~v~ 275 (303)
..+...+++..-|...+....+ +++|+ -++++..-+.+.+.|.++|...+..|.
T Consensus 231 ------------------------elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~ 286 (966)
T KOG4286|consen 231 ------------------------ELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVS 286 (966)
T ss_pred ------------------------HHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchh
Confidence 4888999999999999887776 34553 467788889999999999999999999
Q ss_pred HHHHHHHhhhhcC
Q psy10634 276 HLSKLCQSLLDRN 288 (303)
Q Consensus 276 ~L~~~~~~L~~~~ 288 (303)
.++..+..|.+..
T Consensus 287 ~vndla~ql~~~d 299 (966)
T KOG4286|consen 287 HVNDLARQLTTLD 299 (966)
T ss_pred hHHHHHHHhhhcc
Confidence 9999999998875
No 11
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.01 E-value=3.3e-09 Score=81.14 Aligned_cols=83 Identities=31% Similarity=0.388 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHh
Q psy10634 220 IFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299 (303)
Q Consensus 220 ~~qF~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~ 299 (303)
+.+|..+++++..||..++..+.+.+.|.++..++.++++|+.|+.+|...+..|..+...|+.|+..+|++++.|..++
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 45699999999999999999998777799999999999999999999999999999999999999999999999999998
Q ss_pred hhc
Q psy10634 300 VNT 302 (303)
Q Consensus 300 ~~~ 302 (303)
++|
T Consensus 83 ~~l 85 (105)
T PF00435_consen 83 EEL 85 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 12
>KOG0516|consensus
Probab=98.36 E-value=2.3e-05 Score=84.00 Aligned_cols=194 Identities=18% Similarity=0.102 Sum_probs=168.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHH
Q psy10634 60 FPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVV 139 (303)
Q Consensus 60 ~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v 139 (303)
.+..+|.++...+.++...+. .++.+...+.....|+..+.......+|+............+..++.++.......
T Consensus 178 ~l~~Q~~~ll~~s~~~~~s~~---~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 254 (1047)
T KOG0516|consen 178 ILHFQYVKLLAEASARLQSLD---SLQGSVSRASAELMWLFEAREELLQFDWSDRNLNGAARSEYSEVLMRELEQLVLRK 254 (1047)
T ss_pred HHHHHHHHhhhhHHhhccchH---HHHHhHhhhhHhhhhHHHHHHHHhccCChhhhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 455566677777777776666 59999999999999999999999999999877777766666777789999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhh
Q psy10634 140 SALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLL 219 (303)
Q Consensus 140 ~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~ 219 (303)
+.+...|..+....||+...+.+.+..+..+|.+..+.+.|...++..+..+++
T Consensus 255 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~l~~~~~~e~~l~~~~~~~~-------------------------- 308 (1047)
T KOG0516|consen 255 NDLEVVGDQLLLGRHPARISREAYLAALLAQWSIELELEICAERHLKHNAAYFE-------------------------- 308 (1047)
T ss_pred HHhhccchHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh--------------------------
Confidence 999999999999999999999999999999999999999999999988877665
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhcC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10634 220 IFQFYAEVAEAEVWLKEKKPILHS---SDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLL 285 (303)
Q Consensus 220 ~~qF~~d~~e~~~WL~e~~~~l~s---~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~ 285 (303)
|+.++.....-+......+.. +++.........++.....+...+..+...+..+.......+
T Consensus 309 ---~~~~~~~~~~~~~sl~~~~~~k~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (1047)
T KOG0516|consen 309 ---FFEDVRSAEDELASLRDALDEKYSPDRSSSLLRLLDLLPEEEKEKCVLPNQFEEVRGLQGKERVGV 374 (1047)
T ss_pred ---hhHHhhhhhHHHHHHhhhhhhhccCCccccchhhhhhchHHHHHHHhhhhHHHHHHHHHhhhhccc
Confidence 999999999999988887753 455566777777889999999999999988888888888777
No 13
>KOG4286|consensus
Probab=98.24 E-value=2e-05 Score=78.48 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy10634 85 LYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGAT 164 (303)
Q Consensus 85 l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~ 164 (303)
++.|-.++.++..|+-.-...- .. .-.|-..++.+.+.++.+..++++ ..|...+..|+..-..+.+.+.-.
T Consensus 3 ~q~~~~~l~~f~~w~l~d~~~~-~~-~l~dt~~~~~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~- 74 (966)
T KOG4286|consen 3 LQQFPLDLEKFLAWLLQDATRK-ER-LLEDSKGVKELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ- 74 (966)
T ss_pred hhhhhhhHHHHHHHHHhhhhhh-Hh-hhhcccccHHHHHHHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH-
Confidence 5678899999999992211000 00 001223356677788888888887 344455666665533333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhcC-
Q psy10634 165 SALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHS- 243 (303)
Q Consensus 165 ~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~s- 243 (303)
.++.+|..|...+...+.+|+.+.+... ++..-..++..|+.-+...++.
T Consensus 75 -~mn~~w~~l~kks~~ir~~lea~~~~w~----------------------------kl~~~l~el~~wl~~kd~el~~q 125 (966)
T KOG4286|consen 75 -LMNFKWSELRKKSLNIRSHLEASSDQWK----------------------------RLHLSLQELLVWLQLKDDELSRQ 125 (966)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhhhHHHHHHHHHhhhHHHHhc
Confidence 3999999999999999999999886554 4888899999999999988875
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy10634 244 SDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNH 289 (303)
Q Consensus 244 ~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~ 289 (303)
.++|+|...++..-.-|.+|+++|+.....|.+..+.|...+...+
T Consensus 126 ~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p 171 (966)
T KOG4286|consen 126 APIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQP 171 (966)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCC
Confidence 6889999999999999999999999999999999999998886543
No 14
>KOG4240|consensus
Probab=98.12 E-value=0.00022 Score=74.14 Aligned_cols=236 Identities=17% Similarity=0.185 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhc-ccCCCCCHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHH
Q psy10634 67 SLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAV-STDLGNSLTAVQSLQKKHQALETELAS-REPVVSALAS 144 (303)
Q Consensus 67 ~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~-~~d~g~~l~~v~~l~~~h~~~~~el~~-~~~~v~~l~~ 144 (303)
.+.-....+..++..+.++.....+..++..|+.+....+. ..-.+++......++..|..|..-.+. .-..--.+..
T Consensus 259 ~~El~~d~~s~rl~~a~~l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f~d~~e~k~~~~q~~~~~ 338 (1025)
T KOG4240|consen 259 RLELPADVRSTRLEQASQLAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQFQDAQEVKTLLSQLQVQQ 338 (1025)
T ss_pred hhcchhhchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence 33334567888889999999999999999999999987764 567788999999999999999876665 2222334455
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h---hhchhh-------------
Q psy10634 145 RAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLY------L---ASGYLE------------- 202 (303)
Q Consensus 145 ~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~------l---~~~~~~------------- 202 (303)
.+..+..+.|++...+..++..+++.|+.|...++.|-..+..+.+++.++ | .++|-.
T Consensus 339 ~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~~~~t~e~v~~iLe~le~e~E~~~g~al~~~~f~~ 418 (1025)
T KOG4240|consen 339 KAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVAFYKTSEQVEPILEDLESEYERSGGCALLGAQFRS 418 (1025)
T ss_pred HHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhhhhhhchhHHHH
Confidence 667788899999999999999999999999999999999999999988864 1 111100
Q ss_pred -------------------------------------hcccC------------------chhhh-----hhhhhhhHHH
Q psy10634 203 -------------------------------------SNLLN------------------PMSLW-----KTKHSLLIFQ 222 (303)
Q Consensus 203 -------------------------------------~~~~~------------------~~~~w-----~l~~~~~~~q 222 (303)
..|.+ ....| .+..|..+.-
T Consensus 419 l~a~~l~skh~~~~~~~l~~CTe~r~~ad~~~~ei~r~~i~~~~k~lk~~r~~~r~re~~~l~~~l~a~q~~d~cq~~~~ 498 (1025)
T KOG4240|consen 419 LHAALLISKHRLAKELFLKACTEARRNADVFLREIKRNRILDREKQLKLHRNLLRQRENCDLESWLLAKQALDKCQSYVV 498 (1025)
T ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHhcCcHHHHHHHHHhhhhHHHHHHHHHHHHhccccCcHHHHHHHHhhhHhhhHHHH
Confidence 00111 13346 5678888888
Q ss_pred HHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHhhhc
Q psy10634 223 FYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNT 302 (303)
Q Consensus 223 F~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~~~ 302 (303)
|..-+++++.||....+................+...+..|+.........+.-+.+....+...+|..+..|+..+..+
T Consensus 499 ~e~~~ke~e~~L~~~~ef~~~~~~s~~~~e~~e~~~~~~~~~~~~~~~~~~~~~f~~~~~~f~~~~~~h~~~Iq~~v~~~ 578 (1025)
T KOG4240|consen 499 AEASAKEAEEFLHTEGEFKLKELTSKSERESIELLDLFAKFKSPFKQTKTMVSLFIQLQDNFTELAHRHGREIQKCVERV 578 (1025)
T ss_pred HHHHHHHHHHHHHhCcchhhhhcchhhhhhhccchhhhhhcCCcchhHHHHHHHHHHHhhhhhhhhhhhhhhHHhhcccc
Confidence 99999999999998877544332225555566666777777777777778888888888888888888888887765443
No 15
>KOG0035|consensus
Probab=96.46 E-value=0.0017 Score=66.97 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhcccCCCCC-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHH
Q psy10634 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNS-LTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEG 162 (303)
Q Consensus 84 ~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~-l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~ 162 (303)
....|-+.+.....|...++..+..-++|.+ +..+..+.+.|++|..++..|..++......+..|.......+..+..
T Consensus 395 ~~~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~ 474 (890)
T KOG0035|consen 395 LASKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAA 474 (890)
T ss_pred hhhhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhh
Confidence 3678999999999999999999988899875 477999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhc
Q psy10634 163 ATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILH 242 (303)
Q Consensus 163 ~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~ 242 (303)
.+..+.++|..+-++...|+.+|......-. ++...+..|+..+.-+..||+.....+.
T Consensus 475 ~~q~i~dq~~~~~~ls~~r~pal~~~~~~~d---------------------k~~~~~le~a~Raa~~~~~l~~~~~d~~ 533 (890)
T KOG0035|consen 475 DCQHICDQWDDLGQLSRKRRPALMQMEKVLD---------------------KLAVLTLEFAKRAAPFNNWLKGVQEDLQ 533 (890)
T ss_pred hhhhccccccccchhhhhhchhhhhhhhhhH---------------------HHHHHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 9999999999999999999999988876655 6666667799999999999999777666
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q psy10634 243 SSDFGRDEDSVLSLIKKLESLERE 266 (303)
Q Consensus 243 s~~~g~d~~~~~~ll~~h~~le~e 266 (303)
..........++.++..|..|...
T Consensus 534 d~~~~~~ire~~~~~~a~~~~k~t 557 (890)
T KOG0035|consen 534 DNEISYSIREIQRLRAADLQFKST 557 (890)
T ss_pred cchhccchHhhhccchhhhhhccc
Confidence 655556677777777777666543
No 16
>KOG4240|consensus
Probab=90.31 E-value=7.7 Score=41.44 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=89.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHh
Q psy10634 153 AHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEV 232 (303)
Q Consensus 153 ~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~ 232 (303)
..+....|+..+..+...=+...--...+..++..+.... .+..+..++..
T Consensus 239 ~~~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l~-----------------------------~l~~~k~qv~~ 289 (1025)
T KOG4240|consen 239 DRDMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQLA-----------------------------KLLEDKNQVLA 289 (1025)
T ss_pred chHHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHHH-----------------------------HHHHHHHHHHH
Confidence 3456667777777777666666666666666666655544 49999999999
Q ss_pred HHHhhhhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCChhHHHHHhhhc
Q psy10634 233 WLKEKKPILHS-SDFGRDEDSVLSLIKKLESLERELVS-FQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNT 302 (303)
Q Consensus 233 WL~e~~~~l~s-~~~g~d~~~~~~ll~~h~~le~el~~-~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~~~ 302 (303)
|+++....+.. -..+.+...+..+...|..|...... ....-.+...++..+....|++..++..++..+
T Consensus 290 ~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f~d~~e~k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le~~ 361 (1025)
T KOG4240|consen 290 LIRNGLSMLTQLRVLASDLSETSQLQREHRQFQDAQEVKTLLSQLQVQQKAFDLLQNKHQNRDESLEKLETL 361 (1025)
T ss_pred HHhcchhhhhhhccCCCcCCccHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHhHHHH
Confidence 99999988765 34567888888899999999887766 444555666777778888999888887766543
No 17
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.79 E-value=1.7e+02 Score=32.57 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q psy10634 93 DDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLA 172 (303)
Q Consensus 93 ~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~ 172 (303)
.++..|+.+......-.........+......+..+...+......+.........-+..--.....+......+...|.
T Consensus 226 ~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (1201)
T PF12128_consen 226 NDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIK 305 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhcCCCCCCCHHH
Q psy10634 173 SLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDS 252 (303)
Q Consensus 173 ~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~s~~~g~d~~~ 252 (303)
........+...+...+...+ ..+-.-...-..|-. .+.+.
T Consensus 306 e~~~~~~~~~~~~~~~l~~~~---------------------------~~L~~i~~~~~~ye~------------~~i~~ 346 (1201)
T PF12128_consen 306 ELRDELNKELSALNADLARIK---------------------------SELDEIEQQKKDYED------------ADIEQ 346 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHH------------CCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10634 253 VLSLIKKLESLERELVSFQHTVGHLSKLCQSL 284 (303)
Q Consensus 253 ~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L 284 (303)
+...+.+...+..++......+..|......+
T Consensus 347 ~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di 378 (1201)
T PF12128_consen 347 LIARVDQLPEWRNELENLQEQLDLLTSKHQDI 378 (1201)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 18
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=59.82 E-value=1.1e+02 Score=25.99 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=47.4
Q ss_pred HHhhhchhhhcccC-chhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhcCCCC---CCCHHHHHHHHHHHHHHHHHHHH
Q psy10634 194 LYLASGYLESNLLN-PMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDF---GRDEDSVLSLIKKLESLERELVS 269 (303)
Q Consensus 194 ~~l~~~~~~~~~~~-~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~s~~~---g~d~~~~~~ll~~h~~le~el~~ 269 (303)
+|||..|++....| .+ ++...+..-.+.........=+...++.+.+..+ |.-.+.+..+-.-|-.-+++...
T Consensus 68 ~YLDP~~~e~~~l~~~~---K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ 144 (174)
T PF07426_consen 68 KYLDPNFIEEIQLPDSA---KLQIILAEEDEIKSTAELLEKIKSLEPVLDSESIRNVPELCDKLQKLSQIHLEQQEESEE 144 (174)
T ss_pred HHcCchhhhhcccchHH---HHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47887776543333 22 2222222223444455555566667777776544 22223333334444444555666
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy10634 270 FQHTVGHLSKLCQSLLD 286 (303)
Q Consensus 270 ~~~~v~~L~~~~~~L~~ 286 (303)
....+..|......++.
T Consensus 145 ls~~~~~Ll~~YN~ii~ 161 (174)
T PF07426_consen 145 LSEEVQELLQQYNKIIL 161 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777777776653
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.99 E-value=2.3e+02 Score=26.45 Aligned_cols=181 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCC-------
Q psy10634 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFA------- 156 (303)
Q Consensus 84 ~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~------- 156 (303)
.|.-|...|.++..||.+.........--....+++-++..+..=...-......+..|..-+.-+....=++
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~klle 143 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLE 143 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHH
Q psy10634 157 --AARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWL 234 (303)
Q Consensus 157 --~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL 234 (303)
...+...++.|+..-..|......-...+-.....+. ..+..+-++..-.+++...=
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~---------------------~L~~e~~~L~~~~~e~~~~d 202 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD---------------------ALEEELRQLKQLEDELEDCD 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhHHHHHhCC
Q ss_pred HhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10634 235 KEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLD 286 (303)
Q Consensus 235 ~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~ 286 (303)
.+--..++ ..+-.-...+....+++..++.++......|+.....-..+..
T Consensus 203 ~~eL~~lk-~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 203 PTELDRAK-EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 20
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=46.45 E-value=1.7e+02 Score=24.26 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHHHHHhHHHhhhhhhcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10634 223 FYAEVAEAEVWLKEKKPILHSSDFG---RDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDR 287 (303)
Q Consensus 223 F~~d~~e~~~WL~e~~~~l~s~~~g---~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~ 287 (303)
||...+.+..-|......+.++.+. ..++.--..+..|-.| ++...|..+...+..+|=.++..
T Consensus 74 yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~f-kea~~Y~~rf~q~ltRAl~lIk~ 140 (157)
T PF04136_consen 74 YFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNF-KEAEVYLIRFRQCLTRALTLIKN 140 (157)
T ss_pred HHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776554444444332 2334444556666666 56778888888888888887753
No 21
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.74 E-value=2.2e+02 Score=25.46 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10634 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDR 287 (303)
Q Consensus 222 qF~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~ 287 (303)
+|...+.++..||.+.....+... +-....+..+..+..-..+|......+......|+.++..
T Consensus 189 ~~~~kL~Dl~~~l~eA~~~~~ea~--~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 189 DYNAKLQDLRDLLNEAQNKTREAE--DLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999887665311 1233344445555555666666777777777777766654
No 22
>KOG0933|consensus
Probab=45.45 E-value=4.4e+02 Score=28.76 Aligned_cols=181 Identities=14% Similarity=0.180 Sum_probs=92.5
Q ss_pred cccchhhhHHHHhhchhhhhhhhcccccchHHHH---H----H-HHHHH--------hhhhhcch---------------
Q psy10634 7 LGFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMT---K----L-LHKLV--------VDIFLMYK--------------- 55 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~---~----l-l~~~~--------~~~~~~~~--------------- 55 (303)
.|..|+.|-+.++..-++++.-+.- .||..++= + + +|..| ++.|.+..
T Consensus 596 v~~~~v~~al~Li~yd~~l~~amef-vFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~ 674 (1174)
T KOG0933|consen 596 VGNDNVELALSLIGYDDELKKAMEF-VFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLR 674 (1174)
T ss_pred hcCchHHHHHHHhcCCHHHHHHHHH-HhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHH
Confidence 6888999999999999998876554 48887632 1 1 12221 44443321
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcchhhcccCCCCCHHHHHHHHHHHHHHH
Q psy10634 56 --TSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQW----LLEKEPLAVSTDLGNSLTAVQSLQKKHQALE 129 (303)
Q Consensus 56 --~~~~~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~W----l~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~ 129 (303)
..+.+++..++....-...=-+.|.......+=++++...+.- +.--+..+...+.+....++..+...++..+
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~ 754 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESE 754 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHH
Confidence 1222233333332222222222222211111111222221111 1111233445567778888888889999988
Q ss_pred HHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 130 TELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDA 188 (303)
Q Consensus 130 ~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a 188 (303)
..|......+..+.+....|-..-..+...=..++.++...-......+..-...++..
T Consensus 755 ~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 755 QQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR 813 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777655333222222223444444444444444444444444443
No 23
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=45.32 E-value=2.4e+02 Score=25.69 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhcchhhc---ccCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCC-hHHHHHHHH
Q psy10634 90 RDVDDEMQWLLEKEPLAV---STDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFA-AARIEGATS 165 (303)
Q Consensus 90 ~~~~~~~~Wl~e~e~~~~---~~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~-~~~I~~~~~ 165 (303)
..|.++..=|.+.+..++ ....+++...+.-++.+-+.+.+++...+...- .++..+..- -.-....+.
T Consensus 23 ~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~p-------eii~~n~~VL~~lgkeelq 95 (268)
T PF11802_consen 23 KECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTP-------EIIPLNPEVLLTLGKEELQ 95 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC-------CcCCCCHHHHHHHHHHHHH
Confidence 334443333444443332 233445555566666677777777766554332 343333111 122256677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhcccCchhhhhhhhhhhHHHHHHHHHHHHhHHHhhhhhhcCCC
Q psy10634 166 ALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSD 245 (303)
Q Consensus 166 ~L~~~W~~L~~l~~~r~~~L~~a~~~~q~~l~~~~~~~~~~~~~~~w~l~~~~~~~qF~~d~~e~~~WL~e~~~~l~s~~ 245 (303)
.+.+.-+.+...+..+...|++.+..-+ ++..+..++..-|......+.+..
T Consensus 96 kl~~eLe~vLs~~q~KnekLke~LerEq----------------------------~wL~Eqqql~~sL~~r~~elk~~~ 147 (268)
T PF11802_consen 96 KLISELEMVLSTVQSKNEKLKEDLEREQ----------------------------QWLDEQQQLLESLNKRHEELKNQV 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788888888888899999988886655 488888888888887777776643
No 24
>PRK14127 cell division protein GpsB; Provisional
Probab=44.78 E-value=1.5e+02 Score=23.17 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---------CCChhHHHHHhhhc
Q psy10634 256 LIKKLESLERELVSFQHTVGHLSKLCQSLLDRN---------HFDSKNISKKQVNT 302 (303)
Q Consensus 256 ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~---------~~~~~~I~~~~~~~ 302 (303)
+.++...++.++...+..+..+..+.....+.. ...-=.|-.|+.+|
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~L 97 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNL 97 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHH
Confidence 334444555566666666665555444332111 12334567777665
No 25
>KOG0976|consensus
Probab=41.70 E-value=4.6e+02 Score=27.94 Aligned_cols=109 Identities=17% Similarity=0.034 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchH
Q psy10634 57 SCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASRE 136 (303)
Q Consensus 57 ~~~~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~ 136 (303)
...+...+|.........-...++. ++..+...|..+.+=. +.++..-..++.++...+
T Consensus 82 vstqetriyRrdv~llEddlk~~~s--QiriLQn~c~~lE~ek-------------------q~lQ~ti~~~q~d~ke~e 140 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHES--QIRILQNKCLRLEMEK-------------------QKLQDTIQGAQDDKKENE 140 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
Confidence 3445566666555555544444443 4444555555444322 223333344444444444
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 137 PVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLL 186 (303)
Q Consensus 137 ~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~ 186 (303)
..++.+...+..|++.-...+..|...-++|...-..|...-..-...|.
T Consensus 141 telE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~ 190 (1265)
T KOG0976|consen 141 IEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLA 190 (1265)
T ss_pred HHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence 55555555555554433223334444434433333333333333333333
No 26
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.61 E-value=1.8e+02 Score=23.87 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHhhh
Q psy10634 248 RDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVN 301 (303)
Q Consensus 248 ~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~~ 301 (303)
-+++.-..+..-|+.|..+....++.+-+-...-+.|+..+.||+..|.+...+
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kE 97 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKE 97 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356667777788888999999999999988888899999999999988876544
No 27
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=38.90 E-value=1.4e+02 Score=20.97 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Q psy10634 127 ALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLR 175 (303)
Q Consensus 127 ~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~ 175 (303)
....+....-..=..|++.+..|... ++.......+..|+..|..+.
T Consensus 24 ~~~~~~~~n~~~K~~Li~~~~~l~~~--~d~~~~~~~~k~l~~~Wk~iG 70 (77)
T PF03993_consen 24 EQDAEREENLEKKEALIEEAEALAES--EDWKEAAEEIKELQQEWKEIG 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcC
Confidence 33344444444455566666777654 336777888999999998764
No 28
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.50 E-value=2.1e+02 Score=22.73 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=49.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhc-------------CCCChHHHHHHHHHHHHHHHHHH
Q psy10634 109 TDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRS-------------AHFAAARIEGATSALQDKLASLR 175 (303)
Q Consensus 109 ~d~g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~-------------~h~~~~~I~~~~~~L~~~W~~L~ 175 (303)
...|.+..-+..+......++.++......+..+...-+.+.+. .....+.++..+..++.+++.++
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888887776655544221 01123455566666666666666
Q ss_pred HHHHHHHHHHHH
Q psy10634 176 NAASVRRLRLLD 187 (303)
Q Consensus 176 ~l~~~r~~~L~~ 187 (303)
++.-.+....++
T Consensus 89 ellGEK~E~veE 100 (120)
T PF12325_consen 89 ELLGEKSEEVEE 100 (120)
T ss_pred HHhcchHHHHHH
Confidence 666555554443
No 29
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.60 E-value=2.4e+02 Score=23.17 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy10634 116 TAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNA 177 (303)
Q Consensus 116 ~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l 177 (303)
..-..+..-|+.|..+....+..+..-...=..|+..+.|+...|.+...++.+--..|.+.
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555677888888777777777777777888888999888877766666544444433
No 30
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=35.54 E-value=1.6e+02 Score=20.66 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHH
Q psy10634 60 FPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQ 126 (303)
Q Consensus 60 ~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~ 126 (303)
.|-.+|..+++....|+........ ..+...+..-..=|.+.+....+.+|......+..+++..+
T Consensus 2 ~Lw~~F~~a~~~~~~~~~~~~~~~~-~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~~~~k~l~~~Wk 67 (77)
T PF03993_consen 2 ELWKRFRAACDAFFDRRKEFFEEQD-AEREENLEKKEALIEEAEALAESEDWKEAAEEIKELQQEWK 67 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 5778888999888877766554321 22333333333334444445555555444555555555444
No 31
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.52 E-value=1.3e+02 Score=21.16 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy10634 117 AVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSAL 167 (303)
Q Consensus 117 ~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L 167 (303)
.+..++..|+.+..+=......+..+...-..|++.+..+...|++-+..|
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666777777766666666666666666666665555555554444433
No 32
>KOG0035|consensus
Probab=32.52 E-value=28 Score=36.88 Aligned_cols=138 Identities=13% Similarity=0.141 Sum_probs=89.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHH
Q psy10634 56 TSCFFPFHRYRSLQEPMQIRRDNLEDAL--------LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQA 127 (303)
Q Consensus 56 ~~~~~l~~~~~~L~~~~~~R~~~Le~~~--------~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~ 127 (303)
..+..+-..|..+-.++..|+..|+... ..+.|...+.-.-.|+...............+.+++.+.-.|..
T Consensus 474 ~~~q~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~~~l~~~~~d~~d~~~~~~ire~~~~~~a~~~ 553 (890)
T KOG0035|consen 474 ADCQHICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFNNWLKGVQEDLQDNEISYSIREIQRLRAADLQ 553 (890)
T ss_pred hhhhhccccccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhccchHhhhccchhhhh
Confidence 4555667777777777777777766542 23566677778889998755555554455677888888888877
Q ss_pred HHH---HHhchHHHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 128 LET---ELASREPVVSALASRAKQMSRSAHFAA--ARIEGATSALQDKLASLRNAASVRRLRLLDALESQM 193 (303)
Q Consensus 128 ~~~---el~~~~~~v~~l~~~g~~L~~~~h~~~--~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q 193 (303)
|.. +...+...+......+.......+|.. ..+-.-...+...|+.+.+....+...+.....+++
T Consensus 554 ~k~t~p~a~~~~~~~~~e~~e~~~~~~~~~~~~~~~~np~~~~s~~~~~d~v~~~~~~~~~~~~~~~~~q~ 624 (890)
T KOG0035|consen 554 FKSTLPEADGEGQKISDEEKEREKVSEQLNPKIEPDTNPYTTLSIYGKWDAVLSSVPDRDSIEANVHARQQ 624 (890)
T ss_pred hcccCccccchhhhhhhhhhHHHHhhhhcCcccccccccccccccccchhhhcccccccchhhHHHHHhhc
Confidence 764 344455555555556666655544321 111112222788999999999999998877766554
No 33
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=31.35 E-value=3.9e+02 Score=24.02 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=68.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHH---
Q psy10634 56 TSCFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETEL--- 132 (303)
Q Consensus 56 ~~~~~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el--- 132 (303)
+.+..|......|...-..|...+........ ..+...++..+..... .+.-.-....+++|..+...|
T Consensus 141 ~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~-~d~i~~~l~~~~~~~~-------~~~~~lf~~eL~k~~~~~~~i~~~ 212 (296)
T PF13949_consen 141 EVIRQLRELLNKLEELKKEREELLEQLKEKLQ-NDDISKLLSELNKNGS-------ADFEALFEEELKKFDPLQNRIQQN 212 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHSSS---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHhhccCC-------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777788877776443111 3334555655543211 111123445556676665444
Q ss_pred -hchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 133 -ASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQM 193 (303)
Q Consensus 133 -~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~~~~q 193 (303)
...+..+..|...-..+.... .........+.+-..+..-......-...|.++..||.
T Consensus 213 ~~~Q~~ll~~i~~~~~~~~~~~--~~~~~~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~ 272 (296)
T PF13949_consen 213 LSKQEELLQEIQEANEEFAQSR--KSDQEQKERESALQRLEAAYDAYKELSSNLEEGLKFYN 272 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666777777777776553 22222344444444444444555555666888888877
No 34
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=30.48 E-value=2.3e+02 Score=21.14 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHhhh
Q psy10634 248 RDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVN 301 (303)
Q Consensus 248 ~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~~ 301 (303)
-+.+....+..-+..+..++......+......-..++...++|+..|..-++.
T Consensus 42 Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~ 95 (125)
T PF13801_consen 42 LTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEE 95 (125)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 466777777777788888899999999999999999999999999998877654
No 35
>KOG0994|consensus
Probab=30.24 E-value=8.3e+02 Score=27.45 Aligned_cols=33 Identities=18% Similarity=-0.021 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 157 AARIEGATSALQDKLASLRNAASVRRLRLLDAL 189 (303)
Q Consensus 157 ~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~ 189 (303)
+...+...+.|++.++...++.+.|-..-..+.
T Consensus 1656 A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar 1688 (1758)
T KOG0994|consen 1656 ALSAEQGLEILQKYYELVDRLLEKRMEGSQAAR 1688 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 344555666777788777777777665555544
No 36
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.89 E-value=5e+02 Score=24.78 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhc
Q psy10634 116 TAVQSLQKKHQALE-TELASREPVVSALASRAKQMSRS 152 (303)
Q Consensus 116 ~~v~~l~~~h~~~~-~el~~~~~~v~~l~~~g~~L~~~ 152 (303)
..+..+..+-..|. ..|...+.++..|....+.|...
T Consensus 246 ~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~ 283 (388)
T PF04912_consen 246 PALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEK 283 (388)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555553 45666667777777666666544
No 37
>KOG0516|consensus
Probab=27.59 E-value=8.5e+02 Score=26.71 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHH
Q psy10634 223 FYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISK 297 (303)
Q Consensus 223 F~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~ 297 (303)
+..-+.....|+......+..-+.+...........-+...+.++.......+.+...+..+.-..||....+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 277 (1047)
T KOG0516|consen 203 SVSRASAELMWLFEAREELLQFDWSDRNLNGAARSEYSEVLMRELEQLVLRKNDLEVVGDQLLLGRHPARISREA 277 (1047)
T ss_pred hHhhhhHhhhhHHHHHHHHhccCChhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHhhcccchhhHHH
Confidence 666666666777666665543222211111112233344445556666666666666666666566665444443
No 38
>PRK10869 recombination and repair protein; Provisional
Probab=26.92 E-value=6.7e+02 Score=25.30 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcc
Q psy10634 60 FPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVS 108 (303)
Q Consensus 60 ~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~ 108 (303)
.+...|......+..-++.|+. +..-.........++.-.-..+..
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~---l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQ---HQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555444444443 333334444555666555555443
No 39
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=25.81 E-value=2.5e+02 Score=21.40 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=55.0
Q ss_pred CCCH---HHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 112 GNSL---TAVQSLQKKHQALE-TELASREPVVSALASRAKQMSRSAH--FAAARIEGATSALQDKLASLRNAASVR 181 (303)
Q Consensus 112 g~~l---~~v~~l~~~h~~~~-~el~~~~~~v~~l~~~g~~L~~~~h--~~~~~I~~~~~~L~~~W~~L~~l~~~r 181 (303)
|.+. ..+..+..++..|. .+=.+-..-+..+.....+|...|. ++...|..-+..|...|..+.......
T Consensus 16 ~~~~~~~~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~ 91 (119)
T PF14223_consen 16 GQSKVKQARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNS 91 (119)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhc
Confidence 4455 67788888888887 6777777788888888888877775 467788888999999999888876554
No 40
>KOG0994|consensus
Probab=25.41 E-value=1e+03 Score=26.84 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=10.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy10634 109 TDLGNSLTAVQSLQKKHQALE 129 (303)
Q Consensus 109 ~d~g~~l~~v~~l~~~h~~~~ 129 (303)
.+++-+...|+.+..+-+.--
T Consensus 1504 l~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1504 LELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred ccCCCCHHHHHHHHHHHHHHH
Confidence 345555555555544444433
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.95 E-value=1.1e+03 Score=27.17 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-----------HHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 112 GNSLTAVQSLQKKHQALETELASREPVVSALAS-----------RAKQMSRSAHFAAARIEGATSALQDKLASLRNAASV 180 (303)
Q Consensus 112 g~~l~~v~~l~~~h~~~~~el~~~~~~v~~l~~-----------~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~ 180 (303)
..|......++..|+..+.........+-.|.. .+..++..+..-.+.|+..+..+......+......
T Consensus 931 ~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~q 1010 (1486)
T PRK04863 931 QSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQ 1010 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555444433333333222 222233333333456666666666555555555555
Q ss_pred HHHHHHHH
Q psy10634 181 RRLRLLDA 188 (303)
Q Consensus 181 r~~~L~~a 188 (303)
-+..+...
T Consensus 1011 aq~q~~q~ 1018 (1486)
T PRK04863 1011 AQAQLAQY 1018 (1486)
T ss_pred HHHHHHHH
Confidence 54444444
No 42
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.58 E-value=3e+02 Score=20.49 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 116 TAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVR 181 (303)
Q Consensus 116 ~~v~~l~~~h~~~~~el~~~~~~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r 181 (303)
.....+..-+..+..++......+......-..++...+|+.+.|.+...++......+.......
T Consensus 45 eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~ 110 (125)
T PF13801_consen 45 EQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEH 110 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666777777778888888888888999999999999999888877766655443
No 43
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=23.45 E-value=1.3e+02 Score=17.78 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10634 157 AARIEGATSALQDKLASLR 175 (303)
Q Consensus 157 ~~~I~~~~~~L~~~W~~L~ 175 (303)
...|+++.+-|+..|..+.
T Consensus 8 r~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 8 RQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4688999999999998764
No 44
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.42 E-value=8e+02 Score=24.66 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 223 FYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSK 279 (303)
Q Consensus 223 F~~d~~e~~~WL~e~~~~l~s~~~g~d~~~~~~ll~~h~~le~el~~~~~~v~~L~~ 279 (303)
|..+.+++..++.+....+..- ......++.+..+...+++++......+.....
T Consensus 320 yg~s~e~l~~~~~~l~~eL~~l--~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 320 YGASVEEVLEYAEKIKEELDQL--DDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred hCCCHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557777777777777666541 123445566666666666666666555555533
No 45
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.46 E-value=5.9e+02 Score=22.71 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q psy10634 56 TSCFFPFHRYRSLQEP-MQIRRDNLEDAL--LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETEL 132 (303)
Q Consensus 56 ~~~~~l~~~~~~L~~~-~~~R~~~Le~~~--~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el 132 (303)
+-+.....-|..+... ...-+.+|+.-+ .+..+.+-=+.+-.|+....-. ....+-+.-..|+..+.+|+.++.+.
T Consensus 19 EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~IE~~MErFK~vEkes 97 (233)
T PF04065_consen 19 EGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKLIEEQMERFKVVEKES 97 (233)
T ss_pred HHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777663 334455666655 4566666666889999654322 11112223345777777888887776
Q ss_pred hchHHH
Q psy10634 133 ASREPV 138 (303)
Q Consensus 133 ~~~~~~ 138 (303)
....-+
T Consensus 98 KtKafS 103 (233)
T PF04065_consen 98 KTKAFS 103 (233)
T ss_pred cccccc
Confidence 554433
No 46
>KOG2856|consensus
Probab=21.46 E-value=7.4e+02 Score=23.86 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccCCCCCHHHHHHHHHHHHHHHHHHhchHH
Q psy10634 58 CFFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREP 137 (303)
Q Consensus 58 ~~~l~~~~~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~d~g~~l~~v~~l~~~h~~~~~el~~~~~ 137 (303)
..+++..|.+-++++..+...++.+. ..|...|.++..-+.. +.-...|.+-+...+..++.+++....++.....
T Consensus 123 ~ke~ED~FrKAQKPWaK~l~evE~ak--~~yh~ack~EksA~~r--e~n~kaDsSvspeq~kKlqdrveK~k~evqktke 198 (472)
T KOG2856|consen 123 TKEAEDGFRKAQKPWAKLLKEVEAAK--KAYHAACKEEKSALTR--EQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKE 198 (472)
T ss_pred hHHHHHHHHhhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HhccccCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888899999999988854 5677788888776642 2223456777888899999999999999888777
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10634 138 VVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDAL 189 (303)
Q Consensus 138 ~v~~l~~~g~~L~~~~h~~~~~I~~~~~~L~~~W~~L~~l~~~r~~~L~~a~ 189 (303)
..++.+..-. .+. -.+|+.+..-+..-.+.-..|-+.+.+.+
T Consensus 199 kYektl~el~------~yt----~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil 240 (472)
T KOG2856|consen 199 KYEKTLAELN------KYT----PVYMEDMEQVFEQCQQFEEKRLQFFKEIL 240 (472)
T ss_pred HHHHHHHHHh------ccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776554322 111 13566666666666666667777777765
No 47
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.39 E-value=3e+02 Score=19.37 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHhh
Q psy10634 252 SVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQV 300 (303)
Q Consensus 252 ~~~~ll~~h~~le~el~~~~~~v~~L~~~~~~L~~~~~~~~~~I~~~~~ 300 (303)
.+..|+..++.++.+=......+.++..--..|+.........|.+-+.
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666666666666666665555555554443
Done!