RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10634
(303 letters)
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 153 bits (388), Expect = 1e-44
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
R++ ++ RR L ++ L+Q+ RD+DDE W+ EK+ L S D G LT VQ+L+
Sbjct: 89 GRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLR 148
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
KKH+ LE ELA+ EP + + K++S I+ + D L+ A+ R
Sbjct: 149 KKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARG 208
Query: 183 LRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILH 242
RL ++LE Q QF A V E E W+ EK ++
Sbjct: 209 QRLEESLEYQ-----------------------------QFVANVEEEEAWINEKMTLVA 239
Query: 243 SSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
S D+G ++ L+KK E+ E + + V + + L+ +N+ +NI+ K
Sbjct: 240 SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKM 296
Score = 111 bits (278), Expect = 1e-28
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 82 ALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSA 141
A + + D WL E E L S D G L +V +L KKHQ LE ++++ E +
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 142 LASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYL 201
L S+A + S+ F ++++ + + +++ A+ RR +L ++
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLH--------- 112
Query: 202 ESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLE 261
QF+ ++ + E W+KEKK ++ S D+GRD V +L KK +
Sbjct: 113 --------------------QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHK 152
Query: 262 SLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKK 298
LE EL + + + + + L D N + I ++
Sbjct: 153 RLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQR 189
Score = 89.2 bits (221), Expect = 1e-20
Identities = 34/126 (26%), Positives = 66/126 (52%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
++ L++ R LE++L Q++ +V++E W+ EK L S D G++L A+Q L K
Sbjct: 196 HWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLK 255
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
KH+A ET+ + V+ + + + + + + I L+ K++ L AA+ R+
Sbjct: 256 KHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKA 315
Query: 184 RLLDAL 189
+L +
Sbjct: 316 KLDENS 321
Score = 58.4 bits (141), Expect = 6e-10
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
F + + + WL E + +L S D+G+D SV +L+KK + LE ++ + + + L+
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 282 QSLLDRNHFDSKNISKKQ 299
SL+ + FD+ + K+
Sbjct: 67 DSLMTSSAFDTSQVKDKR 84
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 140 bits (353), Expect = 9e-41
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 29/216 (13%)
Query: 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALA 143
+++Q+ RD+DDE W+ EK+ L S D G LT VQ+L+KKH+ LE ELA+ EP + ++
Sbjct: 1 MVHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVL 60
Query: 144 SRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLES 203
K++S I+ + D L+ A+ R RL ++LE Q
Sbjct: 61 DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ----------- 109
Query: 204 NLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESL 263
QF A V E E W+ EK ++ S D+G ++ L+KK E+
Sbjct: 110 ------------------QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAF 151
Query: 264 ERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
E + + V + + L+ +N+ +NI+ K
Sbjct: 152 ETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKM 187
Score = 93.5 bits (232), Expect = 5e-23
Identities = 34/126 (26%), Positives = 66/126 (52%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
++ L++ R LE++L Q++ +V++E W+ EK L S D G++L A+Q L K
Sbjct: 87 HWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLK 146
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
KH+A ET+ + V+ + + + + + + I L+ K++ L AA+ R+
Sbjct: 147 KHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKA 206
Query: 184 RLLDAL 189
+L +
Sbjct: 207 KLDENS 212
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 128 bits (323), Expect = 3e-36
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 75 RRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELAS 134
+ D+ L ++L D D M W+ L S +L +T ++L ++HQ TE+ +
Sbjct: 5 HHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDA 64
Query: 135 REPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQML 194
R A +Q+ H+A+ I+ L + A L A RR+ L LE Q
Sbjct: 65 RAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQ-- 122
Query: 195 YLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVL 254
F+ + +AE W+ ++ L++ D G DSV
Sbjct: 123 ---------------------------LFHRDCEQAENWMAAREAFLNTEDKGDSLDSVE 155
Query: 255 SLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVN 301
+LIKK E ++ + + + L L+ H+ +IS ++
Sbjct: 156 ALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNE 202
Score = 84.6 bits (209), Expect = 1e-19
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
L++ RR L+ L L + RD + W+ +E + D G+SL +V++L K
Sbjct: 100 ERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIK 159
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
KH+ + + +E ++AL + A Q+ + H+A I + + D+ L+ +R
Sbjct: 160 KHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 128 bits (322), Expect = 2e-35
Identities = 38/227 (16%), Positives = 85/227 (37%), Gaps = 32/227 (14%)
Query: 78 NLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREP 137
++ L+ ++ E+ WL EKE V D + T + + ++ + AL EL +E
Sbjct: 3 HMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEK 62
Query: 138 VVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLA 197
+ L + ++ R H A +E +ALQ + + + L +
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYF----- 117
Query: 198 SGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILH---SSDFGRDEDSVL 254
QF+++V EAE L++ + L S D +
Sbjct: 118 ------------------------QFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLE 153
Query: 255 SLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVN 301
L++ + + +L ++ + L+K ++++ + + ++
Sbjct: 154 DLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHPAHPMRGRLP 200
Score = 60.5 bits (146), Expect = 9e-11
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPL---AVSTDLGNSLTAVQ 119
++ + + +L++ +Q+ DV + L + + S D ++T ++
Sbjct: 94 TQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLE 153
Query: 120 SLQKKHQALETELASREPVVSALASRAKQM 149
L + Q + +L + +S LA RAK +
Sbjct: 154 DLLQDAQDEKEQLNEYKGHLSGLAKRAKAV 183
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 121 bits (305), Expect = 6e-34
Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 85 LYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALAS 144
+++ D + W+ + + +++V+ L K HQ + E+ +R SA
Sbjct: 6 KFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLE 65
Query: 145 RAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESN 204
+ + + H A+ I + + + R RL LE
Sbjct: 66 LGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVC------------ 113
Query: 205 LLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLE 264
QF + + AE WL ++P L S DFG DSV LIK+ E+ E
Sbjct: 114 -----------------QFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFE 156
Query: 265 RELVSFQHTVGHLSKLCQSLLDRNHFDSK 293
+ S+ L K L +
Sbjct: 157 KSTASWAERFAALEKPTTLELKERQIAER 185
Score = 74.2 bits (182), Expect = 4e-16
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
R + + E + R + L L + Q+ RD WL+ +EP S D G+++ +V+ L
Sbjct: 90 SRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLI 149
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFA 156
K+H+A E AS +AL + A
Sbjct: 150 KRHEAFEKSTASWAERFAALEKPTTLELKERQIA 183
Score = 59.2 bits (143), Expect = 8e-11
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 221 FQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKL 280
F+F++ + W++ + + + RD SV L+K + + E+ + +L
Sbjct: 7 FRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLEL 66
Query: 281 CQSLLDRNHFDSKNISKK 298
+SLL R H S+ I +K
Sbjct: 67 GESLLQRQHQASEEIREK 84
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 126 bits (317), Expect = 2e-33
Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 35/241 (14%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
Y +L + R D+L L ++ E+ W+ + E + D + T + Q
Sbjct: 76 EEYENLLKASFERMDHLRQ---LQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQ 132
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
+ ++L +E ++ L + Q+ + H A+ +IE LQ + + +
Sbjct: 133 EAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCID 192
Query: 183 LRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILH 242
+ L + QF+ E E +LK + +
Sbjct: 193 VHLKENAAYF-----------------------------QFFEEAQSTEAYLKGLQDSIR 223
Query: 243 SSDFGRDEDSV---LSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
+ L IK+LE +++ ++ V +L + ++ + S K
Sbjct: 224 KKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKP 283
Query: 300 V 300
+
Sbjct: 284 I 284
Score = 93.6 bits (232), Expect = 1e-21
Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 44/217 (20%)
Query: 87 QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRA 146
+ + W+ ++ G L +V+ H+ + + + + +
Sbjct: 6 FTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADL 65
Query: 147 KQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLL 206
++ S L+++ +L A+ R L
Sbjct: 66 REKSAIYQ------------LEEEYENLLKASFERMDHLRQLQ----------------- 96
Query: 207 NPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERE 266
+ +W+ + + D+ ++ + +
Sbjct: 97 ---------------NIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQ 141
Query: 267 LVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNTH 303
L + + L + L+ H S I
Sbjct: 142 LEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQ 178
Score = 33.5 bits (76), Expect = 0.071
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
Y ++ N++ + + + D++ + K D ++ L+
Sbjct: 351 QYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIAD---LE 407
Query: 123 KKHQALETELASRE 136
+Q E
Sbjct: 408 LHYQEFIRNSQGSE 421
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 120 bits (301), Expect = 6e-32
Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 31/230 (13%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
Y L++ + R+ LE+ L+Q R+ DD QW+ EKE +A S ++G V L+
Sbjct: 90 KHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLR 149
Query: 123 KKHQALETEL-ASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVR 181
K + E A + V + + +++ + H AA I L + A L R
Sbjct: 150 DKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTR 209
Query: 182 RLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPIL 241
L S + +++ AE + EK L
Sbjct: 210 MQLL-----------------------------AASYDLHRYFYTGAEILGLIDEKHREL 240
Query: 242 HSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFD 291
D G D + S + + ER++ V + L +
Sbjct: 241 -PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGE 289
Score = 116 bits (293), Expect = 9e-31
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 30/220 (13%)
Query: 81 DALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVS 140
+A QY D D+ W+ E+E +S ++ + K+H + + +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 141 ALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGY 200
LASRA+ + + H +I + A L++ A R+ +L +
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLF-------- 113
Query: 201 LESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKL 260
Q E + E W+ EK+ + S + G+D D V L K
Sbjct: 114 ---------------------QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKF 152
Query: 261 ESLERELVSFQHT-VGHLSKLCQSLLDRNHFDSKNISKKQ 299
RE + V +++ + L+D H ++ I++ +
Sbjct: 153 RDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWK 192
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 116 bits (292), Expect = 1e-30
Identities = 46/236 (19%), Positives = 97/236 (41%), Gaps = 31/236 (13%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
+ L E + R L + L+++ D + + +K + +LG V++LQ+
Sbjct: 94 AWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKK-LPEELGRDQNTVETLQR 152
Query: 124 KHQALETELASREPVVSALASRAKQM-SRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
H E ++ + V L A ++ + A A I+ + + + SL +A RR
Sbjct: 153 MHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRR 212
Query: 183 LRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILH 242
+RL+D + +F++ V + +W+++ +
Sbjct: 213 VRLVDTGDKF-----------------------------RFFSMVRDLMLWMEDVIRQIE 243
Query: 243 SSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKK 298
+ + RD SV L+ + ++ E+ + + +L +SLL R H+ S+ I +K
Sbjct: 244 AQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEK 299
Score = 106 bits (265), Expect = 9e-27
Identities = 46/223 (20%), Positives = 83/223 (37%), Gaps = 32/223 (14%)
Query: 79 LEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELAS-REP 137
L+Q R+VDD QW+ E+E +A S +LG V LQ++ + + + +
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 138 VVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLA 197
V + A ++ S H AA I L + A L R L + E
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELH----- 116
Query: 198 SGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLI 257
+FY + E +++K L + GRD+++V +L
Sbjct: 117 ------------------------KFYHDAKEIFGRIQDKHKKL-PEELGRDQNTVETLQ 151
Query: 258 KKLESLERELVSFQHTVGHLSKLCQSLLDRN-HFDSKNISKKQ 299
+ + E ++ + V L + L + +I K++
Sbjct: 152 RMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRE 194
Score = 80.4 bits (198), Expect = 1e-17
Identities = 24/123 (19%), Positives = 51/123 (41%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
++SL + + RR L D +++ V D M W+ + + + +++V+ L
Sbjct: 199 EAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLM 258
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
HQ ++ E+ +R + K + H+A+ I+ L +K + + R
Sbjct: 259 NNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRW 318
Query: 183 LRL 185
L
Sbjct: 319 EWL 321
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 113 bits (284), Expect = 2e-30
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 82 ALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSA 141
A + + D WL E E L S D G L +V +L KKHQ LE ++++ E +
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 142 LASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYL 201
L S+A + S+ F ++++ + + +++ A+ RR +L
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL---------------- 105
Query: 202 ESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLE 261
S + QF+ ++ + E W+KEKK ++ S D+GRD V +L KK +
Sbjct: 106 -------------NESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHK 152
Query: 262 SLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
LE EL + + + + + L D N + I ++
Sbjct: 153 RLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRL 190
Score = 103 bits (259), Expect = 6e-27
Identities = 44/128 (34%), Positives = 69/128 (53%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
R++ ++ RR L ++ L+Q+ RD+DDE W+ EK+ L S D G LT VQ+L+
Sbjct: 89 GRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLR 148
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
KKH+ LE ELA+ EP + + K++S I+ + D L+ A+ R
Sbjct: 149 KKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARG 208
Query: 183 LRLLDALE 190
RL ++LE
Sbjct: 209 QRLEESLE 216
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 108 bits (270), Expect = 2e-28
Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 30/213 (14%)
Query: 87 QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRA 146
+L+D+DD WL + S D+ SL + L ++H ++ E+ + +
Sbjct: 4 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 63
Query: 147 KQM-SRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNL 205
+++ + L +L R L L Q
Sbjct: 64 EKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQ------------- 110
Query: 206 LNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLER 265
+F + +AE L ++ L + ++ + I+K E
Sbjct: 111 ----------------EFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLG 154
Query: 266 ELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKK 298
+ + + V L+ + S I +K
Sbjct: 155 SMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEK 187
Score = 89.6 bits (222), Expect = 1e-21
Identities = 19/127 (14%), Positives = 45/127 (35%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
+ +L + R L L ++ +D L +E + +SL A ++ +
Sbjct: 88 GWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIR 147
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
K + + + V + ++ + + +I+ ++D+ A +
Sbjct: 148 KFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASV 207
Query: 184 RLLDALE 190
L D LE
Sbjct: 208 LLRDNLE 214
Score = 47.6 bits (113), Expect = 1e-06
Identities = 8/80 (10%), Positives = 30/80 (37%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
F ++ + + WL + + S D L+++ ++ E+ Q + + +
Sbjct: 4 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 63
Query: 282 QSLLDRNHFDSKNISKKQVN 301
+ ++ + +++
Sbjct: 64 EKVIQGQTDPEYLLLGQRLE 83
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 107 bits (269), Expect = 2e-28
Identities = 43/209 (20%), Positives = 71/209 (33%), Gaps = 31/209 (14%)
Query: 85 LYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETEL-ASREPVVSALA 143
L+Q R+ DD QW+ EKE +A S ++G V L+ K + E A + V +
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 144 SRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLES 203
+ +++ + H AA I L + A L R L + +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYD------------- 109
Query: 204 NLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESL 263
+ +++ AE + EK L D G D + S + +
Sbjct: 110 ----------------LHRYFYTGAEILGLIDEKHREL-PEDVGLDASTAESFHRVHTAF 152
Query: 264 ERELVSFQHTVGHLSKLCQSLLDRNHFDS 292
EREL V + L +
Sbjct: 153 ERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Score = 82.0 bits (202), Expect = 9e-19
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
+ L E + R L + L++Y + + + EK + D+G + +S
Sbjct: 88 EMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHR-ELPEDVGLDASTAESFH 146
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAH-FAAARIEGATSALQDKLASLRNAASVR 181
+ H A E EL V A ++ + A I+ + +L +A + R
Sbjct: 147 RVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGR 206
Query: 182 RLRLLDALESQ 192
R +L+D +
Sbjct: 207 RTQLVDTADKF 217
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 105 bits (264), Expect = 1e-27
Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 35/236 (14%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
+ +++P+ ++ ++ V D + W+ E + T+ G+ L +V+S +
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
H+ + + E + QM+ L+ + A L N + +
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMT---APLKLSYTDKLHRLESQYAKLLNTSRNQER 117
Query: 184 RLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHS 243
L F +WL EK+ +
Sbjct: 118 HLDTLH--------------------------------NFVTRATNELIWLNEKEESEVA 145
Query: 244 SDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
D+ SV L REL + ++ + ++ + LL NH I +
Sbjct: 146 YDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYR 201
Score = 97.4 bits (242), Expect = 2e-24
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
+Y L + + +L+ L+ ++ +E+ WL EKE V+ D ++V +
Sbjct: 103 SQYAKLLNTSRNQERHLDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKK 159
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
H L EL +E + A+ A+Q+ H A IE +A+Q + + +
Sbjct: 160 SYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVE 219
Query: 183 LRLLD 187
+ +
Sbjct: 220 QHIQE 224
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 102 bits (255), Expect = 2e-26
Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 35/213 (16%)
Query: 87 QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRA 146
LR + D + W+ E + + G L +V++ H+ L + + S
Sbjct: 9 STLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDE 68
Query: 147 KQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLL 206
Q+S + A L + A L N++ R L
Sbjct: 69 GQLSPATRGA---YRDCLGRLDLQYAKLLNSSKARLRSLES------------------- 106
Query: 207 NPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERE 266
+ F A + +WL EK+ D+ ++ + + +L RE
Sbjct: 107 -------------LHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRE 153
Query: 267 LVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
L + + L LL +H + Q
Sbjct: 154 LELKEKKIKELQNAGDRLLREDHPARPTVESFQ 186
Score = 93.5 bits (232), Expect = 4e-23
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQK 123
+Y L + R +LE L+ ++ E+ WL EKE V D + T + + ++
Sbjct: 89 QYAKLLNSSKARLRSLES---LHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKE 145
Query: 124 KHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRL 183
+ AL EL +E + L + ++ R H A +E +ALQ + + +
Sbjct: 146 SYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEA 205
Query: 184 RLLD 187
L +
Sbjct: 206 HLKE 209
Score = 47.3 bits (112), Expect = 1e-06
Identities = 11/80 (13%), Positives = 28/80 (35%)
Query: 215 KHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTV 274
H L + + W++E + + +++G D SV + + L + + F+ +
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKI 61
Query: 275 GHLSKLCQSLLDRNHFDSKN 294
L ++
Sbjct: 62 ERARSDEGQLSPATRGAYRD 81
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 95.5 bits (237), Expect = 2e-23
Identities = 38/215 (17%), Positives = 70/215 (32%), Gaps = 24/215 (11%)
Query: 73 QIRRDNLEDALLLYQYLRDVDDEMQWLLEKEP-LAVSTDLGNSLTAVQSLQKKHQALETE 131
R + LE L ++ + W KE L SLT V++L +KH+A E++
Sbjct: 6 IRRLERLEH--LAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 63
Query: 132 LASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALES 191
LA+ + V +A+ A++++ + A + + D+ L RR L +
Sbjct: 64 LAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKL 123
Query: 192 QMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDED 251
L +F A W++ L +
Sbjct: 124 LETIDQ---------------------LHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIE 162
Query: 252 SVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLD 286
+ SLI E + L + + +
Sbjct: 163 EIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 197
Score = 68.2 bits (166), Expect = 1e-13
Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 15/148 (10%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDE--------MQWLLEKEPLAVSTDLGNS 114
++ L Q RR+ LE L + + + E W+ + +S
Sbjct: 101 DQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHS 160
Query: 115 LTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASL 174
+ +QSL H+ + L + ++ + ++ + RI + + L
Sbjct: 161 IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDEL 220
Query: 175 RNA-------ASVRRLRLLDALESQMLY 195
R +R L + L Q
Sbjct: 221 RTKWDKVKQLVPIRDQSLQEELARQHAN 248
Score = 52.8 bits (126), Expect = 2e-08
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDF-GRDEDSVLSLIKKLESLERELVSFQHTVGHLSKL 280
+F + + E W K+ IL D+ V +L++K E+ E +L + Q V ++ +
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 77
Query: 281 CQSLLDRNHFDSKNISKKQ 299
Q L + ++ D+ N++ +
Sbjct: 78 AQELNELDYHDAVNVNDRC 96
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 89.6 bits (222), Expect = 5e-22
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
RY+S +E + R LED+ L + RD DD +W++EK + T +Q
Sbjct: 36 TRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS-YEDPTNIQGKY 94
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
+KHQ+LE E+ ++ ++S L ++ H A + L+ L +
Sbjct: 95 QKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKG 154
Query: 183 LRLLDAL 189
+LL AL
Sbjct: 155 DQLLRAL 161
Score = 57.3 bits (138), Expect = 2e-10
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 34/164 (20%)
Query: 135 REPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQML 194
+ P + + S ++ +A I+ + + S + + R +L D+ Q
Sbjct: 6 QFPKETVVESSGPKVLETAE----EIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQ-- 59
Query: 195 YLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVL 254
F + + W+ EK IL + D ++
Sbjct: 60 ---------------------------VFKRDADDLGKWIMEKVNILTDKSY-EDPTNIQ 91
Query: 255 SLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKK 298
+K +SLE E+ + + L K + H +
Sbjct: 92 GKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAH 135
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 85.7 bits (212), Expect = 1e-20
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
RY +E +RR LED+ + RD ++ +W+ EK +A + T +Q
Sbjct: 26 DRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDEN-YKDPTNLQGKL 84
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
+KHQA E E+ + + L M HFA+ I L + L +
Sbjct: 85 QKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKG 144
Query: 183 LRL 185
++L
Sbjct: 145 IKL 147
Score = 56.4 bits (136), Expect = 4e-10
Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 30/142 (21%)
Query: 157 AARIEGATSALQDKLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKH 216
A I+ + D+ + +++RR +L D+ Q
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQ------------------------ 49
Query: 217 SLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGH 276
F + E E W++EK I + +D ++ ++K ++ E E+ + +
Sbjct: 50 -----FFQRDAEELEKWIQEKLQIASDEN-YKDPTNLQGKLQKHQAFEAEVQANSGAIVK 103
Query: 277 LSKLCQSLLDRNHFDSKNISKK 298
L + ++ HF S+ I +
Sbjct: 104 LDETGNLMISEGHFASETIRTR 125
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 83.3 bits (206), Expect = 2e-20
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 82 ALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSA 141
L L Y+RD + W+ +E + D N+ V++L KKH+ + + E ++A
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 142 LASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLD 187
L + A Q+ H+A+ ++ + ++ L+ +R RL D
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 69.1 bits (169), Expect = 5e-15
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
+ + AE W+ ++ L++ D +V +LIKK E ++ + + + L +
Sbjct: 7 LYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVA 66
Query: 282 QSLLDRNHFDSKNISKKQVN 301
L+ +NH+ S + +K+
Sbjct: 67 DQLIAQNHYASNLVDEKRKQ 86
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 83.8 bits (206), Expect = 3e-18
Identities = 36/247 (14%), Positives = 85/247 (34%), Gaps = 23/247 (9%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQ--------YLRDVDDEMQWLLEKEPLAVSTDLGNS 114
++ L Q RR+ LE L + + + W+ + +S
Sbjct: 218 DQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHS 277
Query: 115 LTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASL 174
+ +QSL H+ + L + ++ + ++ + RI + + L
Sbjct: 278 IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDEL 337
Query: 175 RNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWL 234
R +++ L + Q L +N L QF A+ W+
Sbjct: 338 RTK--WDKVKQLVPIRDQSLQEELARQHAN------------ERLRRQFAAQANAIGPWI 383
Query: 235 KEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKN 294
+ K + S ++ + +L+ E ++++++ + L Q + + FD+K+
Sbjct: 384 QNKMEEIARSSIQ-ITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKH 442
Query: 295 ISKKQVN 301
+ +
Sbjct: 443 TNYTMEH 449
Score = 80.3 bits (197), Expect = 4e-17
Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTD-LGNSLTAVQSL 121
Y R + LE L ++ + W KE + + D SLT V++L
Sbjct: 113 KGYEEWLLNEIRRLERLEH--LAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRAL 170
Query: 122 QKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVR 181
+KH+A E++LA+ + V +A+ A++++ + A + + D+ L R
Sbjct: 171 LRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR 230
Query: 182 RLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPIL 241
R L + L +T L + +F A W++ L
Sbjct: 231 REALERMEK--------------------LLETIDQLHL-EFAKRAAPFNNWMEGAMEDL 269
Query: 242 HSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSL 284
+ + SLI E + L + + +
Sbjct: 270 QDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEV 312
Score = 64.1 bits (155), Expect = 1e-11
Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 32/231 (13%)
Query: 78 NLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALET------- 130
N E+ L+ +Y R + ++W+ P + ++ A+Q + +
Sbjct: 6 NQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKV 65
Query: 131 -ELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDAL 189
E E + L ++ + +R A S + L A LL+ +
Sbjct: 66 QEKCQLEINFNTLQTKLRISNRPA--FMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEI 123
Query: 190 ESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDF-GR 248
+ L +F + + E W K+ IL D+
Sbjct: 124 RRL---------------------ERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESA 162
Query: 249 DEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
V +L++K E+ E +L + Q V ++ + Q L + ++ D+ N++ +
Sbjct: 163 SLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRC 213
Score = 57.2 bits (137), Expect = 2e-09
Identities = 13/137 (9%), Positives = 45/137 (32%), Gaps = 9/137 (6%)
Query: 64 RYRSLQEPMQIRRDNLEDAL--------LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSL 115
++ +++ + IR +L++ L L Q+ + W+ K ++
Sbjct: 340 KWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKM-EEIARSSIQIT 398
Query: 116 TAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLR 175
A++ + + E + + + + L + + + F ++ L
Sbjct: 399 GALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLL 458
Query: 176 NAASVRRLRLLDALESQ 192
+ + + ++
Sbjct: 459 TTIARTINEVETQILTR 475
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 77.6 bits (190), Expect = 4e-16
Identities = 33/244 (13%), Positives = 77/244 (31%), Gaps = 23/244 (9%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQ--------YLRDVDDEMQWLLEKEPLAVSTDLGNS 114
++ +L Q RR+ LE L + Y + W+ T + ++
Sbjct: 457 DQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHT 516
Query: 115 LTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASL 174
+ +Q L H+ + L + A+ ++S+ + G +
Sbjct: 517 IEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576
Query: 175 RNAASVRRLRLLDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWL 234
+ + L + L + ++ L QF A+ W+
Sbjct: 577 NG-----KWEHVRQLVPRR---------DQALMEEHARQQQNERLRKQFGAQANVIGPWI 622
Query: 235 KEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKN 294
+ K + + + L E+ +V+++ + L Q + + FD+K+
Sbjct: 623 QTKMEEIGRISIEMHGT-LEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKH 681
Query: 295 ISKK 298
+
Sbjct: 682 TNYT 685
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 3e-09
Identities = 60/404 (14%), Positives = 114/404 (28%), Gaps = 141/404 (34%)
Query: 1 MQLKESLGFSNVAWQVRS-----VHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYK 55
++L+++L ++R + + G GKT + +D+ L YK
Sbjct: 138 LKLRQAL------LELRPAKNVLIDGVLGS---------GKTW-------VALDVCLSYK 175
Query: 56 TSCFFPFHRY----------RSLQEPMQ---------------------IRRDNLEDALL 84
C F + ++ E +Q +R +++ L
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 85 LY----QY------LRDVDDEMQW---------LLEKEPLAVSTDLGNSLTAVQSLQKKH 125
Y L +V + W LL V+ L + T SL
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 126 QALETELASREPVVSALASRAKQMSRSAH---------FAA------ARIEGATSALQDK 170
L T + ++ L R + + R A A + DK
Sbjct: 296 MTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 171 LASLRNAASVRRLRLLDALESQMLYLASGYLESNLLNPMS----LWKTKHSLLIFQFYAE 226
L ++ ++ L +L+ E + ++ + P +W + +
Sbjct: 355 LTTIIESS----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 227 VAE---AEVWLKEKKPILHSSDFGRDEDSVLSLIKKLE---SLERELVS----------- 269
+ + E KE + L L KLE +L R +V
Sbjct: 411 LHKYSLVEKQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 270 -----------FQHTVGHLSKLCQ----SLLDRNHFDSKNISKK 298
+ H HL + +L D + + +K
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Score = 47.9 bits (113), Expect = 3e-06
Identities = 34/269 (12%), Positives = 72/269 (26%), Gaps = 71/269 (26%)
Query: 68 LQEPMQIRR-DNLEDALLLYQ---YLRDVDDEMQ----WLLEK---EPLAVSTDLGNSLT 116
+ + L LL Q + V++ ++ +L+ E S +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 117 AVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEG---------ATSAL 167
L +Q SR L ++ + + I+G A
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWVALDVC 171
Query: 168 QDKL-----------ASLRNAASVR-RLRLLDALESQM-------------LYLASGYLE 202
+L+N S L +L L Q+ + L ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 203 SNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFG-------RDE---DS 252
+ L + ++ LL+ V + ++ + R + D
Sbjct: 232 AELRRLLKSKPYENCLLVL--------LNVQNAK---AWNAFNLSCKILLTTRFKQVTDF 280
Query: 253 VLSLIKKLESLERELVSFQH--TVGHLSK 279
+ + SL+ ++ L K
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Score = 32.5 bits (73), Expect = 0.18
Identities = 35/270 (12%), Positives = 71/270 (26%), Gaps = 105/270 (38%)
Query: 59 FFPFHRYRSLQEPMQIRRDNLEDALL--LYQYL----RDVDDEMQ-----W--LLEKEPL 105
+ L ++ + LE A ++ L W +++ + +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 106 AVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATS 165
V V L K S + + K+ + S S
Sbjct: 406 VV----------VNKLHKY---------------SLVEKQPKESTISIP----------S 430
Query: 166 ALQDKLASLRNAASVRRLRLLDALESQ--------------------------------- 192
+ L N ++ R ++D
Sbjct: 431 IYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 193 -----MLYLASGYLESNLLNPMSLWKTKHS----LLIFQFYAEVAEAEVWLKEKKPILHS 243
M++L +LE + + + W S L +FY K I +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY------------KPYICDN 537
Query: 244 SDFGRDEDSVLSLIKKLESLERELVSFQHT 273
+ E V +++ L +E L+ ++T
Sbjct: 538 DP--KYERLVNAILDFLPKIEENLICSKYT 565
Score = 28.7 bits (63), Expect = 3.4
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 49/181 (27%)
Query: 14 WQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSC--------------- 58
S S+ +Y + K LH+ +VD + + KT
Sbjct: 420 QPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 59 FFPFHRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEK-----EPLAVSTDLGN 113
H L+ R L + L + ++L +K S + N
Sbjct: 476 HIGHH----LKNIEHPERMTLFRMVFL---------DFRFLEQKIRHDSTAWNASGSILN 522
Query: 114 SLTAVQS----LQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQD 169
+L ++ + E + + ++ L + + S + RI AL
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNA---ILDFLPKIEENLICSKYTDLLRI-----ALMA 574
Query: 170 K 170
+
Sbjct: 575 E 575
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 55.1 bits (132), Expect = 3e-09
Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 27/230 (11%)
Query: 77 DNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQAL-ETELASR 135
E L +Y V +QW+ +S ++ L + E EL ++
Sbjct: 5 RANELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAK 64
Query: 136 EPVVSALASRAK--QMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQM 193
E + + + + A ++ + L A R +L E
Sbjct: 65 EADKNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLE 124
Query: 194 LYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSV 253
++ + E AE L + +L S +
Sbjct: 125 ---------------------ALQRIVTKLQMEAGLAEEQLNQADALLQSDV---RLLAA 160
Query: 254 LSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQVNTH 303
+ ++ +ER+L + L Q+L D H + + ++ H
Sbjct: 161 GKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLH 210
Score = 47.4 bits (112), Expect = 2e-06
Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 64 RYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQ--------WLLEKEPLAVSTDLGNSL 115
+ L + R L + L+ + ++Q L + + L S L
Sbjct: 101 EWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDV---RL 157
Query: 116 TAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLR 175
A + ++ +E +L + ++ L + + + H ++ L +L ++R
Sbjct: 158 LAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIR 217
Query: 176 NAASVRRLRLLDALESQM 193
++R + A +Q+
Sbjct: 218 TEYNLRLKAGVAAPATQV 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 186 LDALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEK-KPILH-- 242
+DA ++ L L+ G LE LL P + + F A L+E+ IL
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASF----------FIASQ------LQEQFNKILPEP 44
Query: 243 SSDFGRDED--SVLSLIKK-LESLERELVSFQHTVGHLSKLCQSLLDRNHFDSKNISKKQ 299
+ F D++ + L+ K L + + VG ++ L F++ +
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVE--PSKVGQFDQVLNLCL--TEFENCYLEGND 100
Query: 300 VNT 302
++
Sbjct: 101 IHA 103
Score = 37.3 bits (86), Expect = 0.006
Identities = 58/352 (16%), Positives = 103/352 (29%), Gaps = 112/352 (31%)
Query: 3 LKESLG-FSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFP 61
L L F N + +H+L + L + T L+ ++ Y T+
Sbjct: 84 LNLCLTEFENCYLEGNDIHAL--AAK------LLQENDTTLVKTK--ELIKNYITARIM- 132
Query: 62 FHRYRSLQEPMQIRRDNLEDALL---------LY-----Q-----YLRDVDDEMQWL--- 99
+ P + ++ AL L Q Y +E++ L
Sbjct: 133 ------AKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYF----EELRDLYQT 179
Query: 100 ---LEKEPLAVSTDLGNSLTAVQSLQKKH--------QALETELASREPVVSALASRA-- 146
L + + S + + L +K + LE S P L S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--PSNTPDKDYLLSIPIS 237
Query: 147 ------KQMSRSAHFAAA-------------RIEGATSALQDKLASLRNAASVRRLRLLD 187
Q+ AH+ ++GAT Q + ++ A +
Sbjct: 238 CPLIGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 188 ALESQMLYLAS-GYLESNLLNP-MSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSD 245
++ + L G + P SL + I + E E P+L S+
Sbjct: 295 SVRKAITVLFFIG-VRCYEAYPNTSLPPS-----ILEDSLENNE-----GVPSPMLSISN 343
Query: 246 FGRDEDSVLSLIKKL-ESLERE------LV-SFQHTV--GH---LSKLCQSL 284
+++ V + K L LV ++ V G L L +L
Sbjct: 344 LTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Score = 35.4 bits (81), Expect = 0.023
Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 72/210 (34%)
Query: 101 EKEP---LAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAA 157
E P L++S +LT Q +Q + L + + V +L + AK +
Sbjct: 332 EGVPSPMLSIS-----NLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKNLV------- 378
Query: 158 ARIEGATSALQDKLASLRNAA------------SVRRLRLLDALESQMLYLA------SG 199
+ G +L +LR A S R+L+ +L S
Sbjct: 379 --VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF------SNRFLPVASPFHSH 430
Query: 200 YLES-------NLLNPMSLWKTKHSLLI--FQFY---------AEVAEAEV--------- 232
L +L+ + K + I + + ++E V
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAK-DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 233 WLKE-KKPILHSSDFGRDEDSVLS-LIKKL 260
W + H DFG S L L +
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 35.0 bits (80), Expect = 0.028
Identities = 49/284 (17%), Positives = 93/284 (32%), Gaps = 93/284 (32%)
Query: 3 LKESLGFSNVAWQVRSVHSLDGVSHIVYSVVLGKTIMTKLLHKLVVDIFLMYKTSCFFPF 62
K++ GFS + IV + + TI F
Sbjct: 1653 FKDTYGFS--------------ILDIVINNPVNLTI--------------------HFGG 1678
Query: 63 HRYRSLQEP-MQIRRDNLEDA-LLLYQYLRDVDDEMQ---WLLEKEPLAVSTDLGNS--- 114
+ + ++E + + + D L + +++++ + EK L+ +T +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQ--FTQPA 1735
Query: 115 LTAVQSLQKKHQALETELASREPVV---------SALASRAKQMS------------RSA 153
LT ++ + L+++ +ALAS A MS +
Sbjct: 1736 LTLMEKAA--FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 154 HFAAARIEGATS-----AL----------QDKLASLRNAASVRRLRLLDA----LESQML 194
A R E S A+ Q+ L + R L++ +E+Q
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ-Q 1852
Query: 195 YLASGYLE-----SNLLNPMSLWKTKHSLLIFQFYAEVAEAEVW 233
Y+A+G L +N+LN + L K L E E ++
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 29.2 bits (65), Expect = 2.1
Identities = 37/266 (13%), Positives = 70/266 (26%), Gaps = 105/266 (39%)
Query: 131 ELASREPVVSALASRAKQMSRSA------------------HFAAA---RIEGATSALQD 169
+L + +RA + HF RI SA+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM-- 1691
Query: 170 KLASLRNAASVRRLRLLDALESQMLYLASGYLESNLLN------P----MS-----LWKT 214
++ + + E Y E LL+ P M K+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 215 K-----------HSLLIFQF--Y-AEVAEAEVW-LKEKKPILH----------------S 243
K HSL Y A + A+V ++ ++
Sbjct: 1750 KGLIPADATFAGHSL-----GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 244 SDFGR------------DEDSVLSLIKKLESLERELVS---F----QHTV--GH---LSK 279
S++G ++++ +++++ LV + Q V G L
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 280 LCQSLLDRNHFDSKNI--SKKQVNTH 303
+ L N + I + Q +
Sbjct: 1865 VTNVL---NFIKLQKIDIIELQKSLS 1887
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein;
four-helix bundle, modular enzyme, domain, flexible
region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB:
2gdw_A 2gdx_A 2gdy_A 2k2q_A
Length = 91
Score = 32.1 bits (74), Expect = 0.046
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 112 GNSLTAVQSLQKKHQALETELASRE----PVVSALASRAKQMSRSAH 154
G+SL A+ + H+ + EL + P + ALA S H
Sbjct: 43 GHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATRSHHHH 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.053
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 15/43 (34%)
Query: 70 EPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEP-LAVSTDL 111
E +++ L+ +L LY DD P LA+ +
Sbjct: 18 EKQALKK--LQASLKLYA-----DDS-------APALAIKATM 46
Score = 29.1 bits (64), Expect = 0.91
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 119 QSLQKKHQALETELASREPVVSALASRA 146
Q+L+K +L+ P ALA +A
Sbjct: 20 QALKKLQASLKLYADDSAP---ALAIKA 44
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 30.4 bits (68), Expect = 0.28
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 98 WLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAA 157
W+ + +++ ++ L H ++ L + A+ + K+ R A
Sbjct: 27 WMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNH 86
Query: 158 ARIEGA-------TSALQDKLASLRNAASVRRLRLLDALESQ 192
++ G+ + K ++ R LL+ Q
Sbjct: 87 IKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEEQSKQ 128
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 31.7 bits (73), Expect = 0.30
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 112 GNSLTAVQSLQKKHQALETELASRE----PVVSALASRAKQMSRSAHFAAARIE 161
G+SL A++ L H + ++ R P + LA+ ++ ++ F+ ++
Sbjct: 39 GHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETAKGNVFSIEPVQ 92
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP:
d.108.1.1
Length = 170
Score = 29.6 bits (67), Expect = 0.77
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 70 EPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEP 104
+ + I+ E ++ L V E ++L E
Sbjct: 6 DTVTIKPIRAEHVESFHRALDAVSRERKYLSFLEA 40
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 28.9 bits (64), Expect = 1.7
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 118 VQSLQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNA 177
+ L +++ ++ S + +V+ L + +S A I LQ ++ SL
Sbjct: 1 MDPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEI----KQLQKQIDSLNAQ 56
Query: 178 ASVRRLRLLDALES 191
+ + E+
Sbjct: 57 VKELKTQTSQQAEN 70
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 29.5 bits (67), Expect = 1.9
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 112 GNSLTAVQSLQKKHQALETELASRE----PVVSALASRAKQMSRSA 153
G++L A+ + + + L +L + P ++ +++ K
Sbjct: 1001 GHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDG 1046
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 2.7
Identities = 3/24 (12%), Positives = 4/24 (16%), Gaps = 3/24 (12%)
Query: 146 AKQMSRSAHFAAARIEGATSALQD 169
Q+ F A
Sbjct: 1006 ISQVDPITLFVLV---SVVEAFIA 1026
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 28.1 bits (63), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 153 AHFAAARIEGATSALQDKLASLRNA-ASVRRLRL 185
+ A A +EG + +D L +R+ AS+ R+ L
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILL 430
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.5 bits (61), Expect = 7.3
Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 18/176 (10%)
Query: 121 LQKKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGA---TSALQDKLASLRNA 177
LQ+K QA A E + LA++ +++ H ARIE + LQ + ++
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 178 ASVRRLRLLDALESQMLYLASGYLE-----SNLLNPMSLWKTKHSLLIFQFYAEVAEAEV 232
+ L+ E+ L + + + + + + +++ L E E
Sbjct: 957 MLDLEEQ-LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT----KERKLLEE 1011
Query: 233 WLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLCQSLLDRN 288
+ + L +E+ +L K E + + + K Q L
Sbjct: 1012 RVSDLTTNLAE-----EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 27.1 bits (59), Expect = 7.7
Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 11/193 (5%)
Query: 75 RRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELAS 134
R + ED L ++L E + S DL + T + +A E +
Sbjct: 138 RENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFV-L 196
Query: 135 REPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQML 194
+ + + +S+ + + +++ + + +
Sbjct: 197 KLLNDQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYK 256
Query: 195 YLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVL 254
L++ Y L + + L + L P D D
Sbjct: 257 SLSA-YYHGLHLEEENRVGEAIAFL--------DFSMQQLISSLPFKTWLVEFIDFDGFK 307
Query: 255 SLI-KKLESLERE 266
+ KK + L ++
Sbjct: 308 ETLEKKQKELIKD 320
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 27.1 bits (60), Expect = 7.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 150 SRSAHFAAARIEGATSALQDK------LASLRNAASVRRLRLLDALESQMLYLASGYLES 203
S HF AR+ A + L + +R+AA RR+ L E ++L + + L
Sbjct: 562 PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA--RRVEALPPTEPRVLQIRALVLGG 619
Query: 204 NL 205
L
Sbjct: 620 AL 621
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 26.8 bits (60), Expect = 8.5
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 100 LEKEPLAVSTDLGNSLTAVQSL-QKKHQALETELASREPVVSALASRAKQ 148
LE E + VS L N+ Q L E ++ R Q
Sbjct: 109 LEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKRLAQ 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.365
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,282,997
Number of extensions: 243797
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 84
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)