RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10634
(303 letters)
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 86.9 bits (215), Expect = 3e-22
Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 87 QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRA 146
Q++ +V++E W+ EK L S D G++L A+Q L KKH+A ET+ + V+ + +
Sbjct: 1 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG 60
Query: 147 KQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDAL 189
+ + + + I L+ K++ L AA+ R+ +L +
Sbjct: 61 EDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 103
Score = 65.8 bits (160), Expect = 3e-14
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
QF A V E E W+ EK ++ S D+G ++ L+KK E+ E + + V +
Sbjct: 1 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG 60
Query: 282 QSLLDRNHFDSKNISKKQ 299
+ L+ +N+ +NI+ K
Sbjct: 61 EDLIKKNNHHVENITAKM 78
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 83.1 bits (205), Expect = 1e-20
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 82 ALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSA 141
L L Y+RD + W+ +E + D N+ V++L KKH+ + + E ++A
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 142 LASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLD 187
L + A Q+ H+A+ ++ + ++ L+ +R RL D
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 64.6 bits (157), Expect = 6e-14
Identities = 18/83 (21%), Positives = 41/83 (49%)
Query: 217 SLLIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGH 276
+L + + + AE W+ ++ L++ D +V +LIKK E ++ + + +
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 277 LSKLCQSLLDRNHFDSKNISKKQ 299
L + L+ +NH+ S + +K+
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKR 84
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 82.0 bits (202), Expect = 2e-20
Identities = 37/100 (37%), Positives = 54/100 (54%)
Query: 86 YQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASR 145
+Q+ RD+DDE W+ EK+ L S D G LT VQ+L+KKH+ LE ELA+ EP + +
Sbjct: 1 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT 60
Query: 146 AKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRL 185
K++S I+ + D L+ A+ R RL
Sbjct: 61 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 100
Score = 63.9 bits (155), Expect = 1e-13
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
QF+ ++ + E W+KEKK ++ S D+GRD V +L KK + LE EL + + + +
Sbjct: 2 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTG 61
Query: 282 QSLLDRNHFDSKNISKKQ 299
+ L D N + I ++
Sbjct: 62 KKLSDDNTIGKEEIQQRL 79
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 80.8 bits (199), Expect = 1e-19
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 75 RRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTD-LGNSLTAVQSLQKKHQALETELA 133
R + LE L ++ + W KE + + D SLT V++L +KH+A E++LA
Sbjct: 8 RLERLE--HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 134 SREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALE 190
+ + V +A+ A++++ + A + + D+ L RR L +
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEK 122
Score = 58.0 bits (140), Expect = 2e-11
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDF-GRDEDSVLSLIKKLESLERELVSFQHTVGHLSKL 280
+F + + E W K+ IL D+ V +L++K E+ E +L + Q V ++ +
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 77
Query: 281 CQSLLDRNHFDSKNISKKQ 299
Q L + ++ D+ N++ +
Sbjct: 78 AQELNELDYHDAVNVNDRC 96
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 80.0 bits (197), Expect = 2e-19
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 82 ALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSA 141
A + + D WL E E L S D G L +V +L KKHQ LE ++++ E +
Sbjct: 1 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 60
Query: 142 LASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALE 190
L S+A + S+ F ++++ + + +++ A+ RR +L ++
Sbjct: 61 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 109
Score = 61.2 bits (148), Expect = 1e-12
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
F + + + WL E + +L S D+G+D SV +L+KK + LE ++ + + + L+
Sbjct: 6 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 65
Query: 282 QSLLDRNHFDSKNISKKQ 299
SL+ + FD+ + K+
Sbjct: 66 DSLMTSSAFDTSQVKDKR 83
Score = 25.0 bits (54), Expect = 6.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLL 85
R++ ++ RR L ++ L
Sbjct: 88 GRFQRIKSMAAARRAKLNESHRL 110
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 72.9 bits (178), Expect = 5e-17
Identities = 13/103 (12%), Positives = 36/103 (34%)
Query: 85 LYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALAS 144
++ +D L +E + +SL A ++ +K + + + V +
Sbjct: 2 FQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVD 61
Query: 145 RAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLD 187
++ + + +I+ ++D+ A + L D
Sbjct: 62 SGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRD 104
Score = 55.1 bits (132), Expect = 2e-10
Identities = 13/78 (16%), Positives = 29/78 (37%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
+F + +AE L ++ L + ++ + I+K E + + + V
Sbjct: 4 EFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSG 63
Query: 282 QSLLDRNHFDSKNISKKQ 299
L+ + S I +K
Sbjct: 64 NKLVAEGNLYSDKIKEKV 81
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 72.5 bits (177), Expect = 3e-16
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 63 HRYRSLQEPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQ 122
RY+S +E + R LED+ L + RD DD +W++EK + + T +Q
Sbjct: 33 TRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYED-PTNIQGKY 91
Query: 123 KKHQALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRR 182
+KHQ+LE E+ ++ ++S L ++ H A + L+ L +
Sbjct: 92 QKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKG 151
Query: 183 LRLL 186
+LL
Sbjct: 152 DQLL 155
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 64.0 bits (155), Expect = 2e-13
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALA 143
L ++ + W+ + +S+ +QSL H+ + L + ++
Sbjct: 6 LHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIM 65
Query: 144 SRAKQMSRSAHFAAARIEGATSALQDKLA-------SLRNAASVRRLRLLDALESQM 193
+ ++ + RI + + ++ +R L + L Q
Sbjct: 66 AIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 122
Score = 50.2 bits (119), Expect = 1e-08
Identities = 12/81 (14%), Positives = 22/81 (27%)
Query: 219 LIFQFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLS 278
L +F A W++ L + + SLI E + L +
Sbjct: 6 LHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIM 65
Query: 279 KLCQSLLDRNHFDSKNISKKQ 299
+ + + IS
Sbjct: 66 AIQNEVEKVIQSYNIRISSSN 86
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 59.4 bits (143), Expect = 4e-12
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 87 QYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALASRA 146
+L+D+DD WL + S D+ SL + L ++H ++ E+ + +
Sbjct: 3 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 62
Query: 147 KQM-SRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDAL 189
+++ + L +L R L L
Sbjct: 63 EKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCL 106
Score = 43.6 bits (102), Expect = 2e-06
Identities = 8/79 (10%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
F ++ + + WL + + S D L+++ ++ E+ Q + + +
Sbjct: 3 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 62
Query: 282 QSLLDRN-HFDSKNISKKQ 299
+ ++ + + ++
Sbjct: 63 EKVIQGQTDPEYLLLGQRL 81
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 59.7 bits (144), Expect = 5e-12
Identities = 9/109 (8%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQALETELASREPVVSALA 143
L Q+ + W+ K ++ A++ + + E + + + + L
Sbjct: 6 LRRQFAAQANAIGPWIQNKMEE-IARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLE 64
Query: 144 SRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALESQ 192
+ + + F ++ L + + + ++
Sbjct: 65 GDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTR 113
Score = 45.8 bits (108), Expect = 3e-07
Identities = 12/82 (14%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 222 QFYAEVAEAEVWLKEKKPILHSSDFGRDEDSVLSLIKKLESLERELVSFQHTVGHLSKLC 281
QF A+ W++ K + + + ++ + +L+ E ++++++ + L
Sbjct: 9 QFAAQANAIGPWIQNKMEEI-ARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDH 67
Query: 282 QSLLDRNHFDSKNISKKQVNTH 303
Q + + FD+K+ + +
Sbjct: 68 QLIQEALVFDNKHTNYTMEHIR 89
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 238
Score = 28.6 bits (64), Expect = 0.73
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 179 SVRRLRLLD-ALESQMLYLASGYLESNLLNPMSLWKTKHSLLIFQFYAEVAEAEVWLKEK 237
++R+ L A + + + + + P+ +T + L+ QF + E EV L +
Sbjct: 45 QIQRIVSLPKADDIHHMMVMA------IEPPLRQGQTTYPFLVLQFQKD-EETEVQLNLE 97
Query: 238 KPILHSSDFGRDEDSVLSLIKK-LESLERELVSFQHTV 274
+ + + + L + + L + V
Sbjct: 98 DEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIV 135
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 288
Score = 27.0 bits (58), Expect = 2.9
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 126 QALETELASREPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLR 184
AL +R P + + ++ + AA+R + SA + + V R R
Sbjct: 231 AALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITG-SYRNQVERPR 288
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 25.6 bits (56), Expect = 4.3
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 84 LLYQYLRDVDDEMQWLLEKEPLAVSTDLGNSLTAVQSLQKKHQ--------ALETELASR 135
L+ +Y R + ++W+ P + ++ A+Q + + E
Sbjct: 11 LMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQL 70
Query: 136 EPVVSALASRAKQMSRSAHFAAARIEGATSALQDKLASLRNAASVRRLRLLDALE 190
E + L ++ + +R A + S + L A LL+ +
Sbjct: 71 EINFNTLQTKLRISNRPAFMPSEGKM--VSDIAGAWQRLEQAEKGYEEWLLNEIR 123
>d1vkoa2 d.81.1.3 (A:315-428) Myo-inositol 1-phosphate synthase
{Caenorhabditis elegans [TaxId: 6239]}
Length = 114
Score = 25.1 bits (55), Expect = 6.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 284 LLDRNHFDSKNISKKQV 300
L + F SK ISK V
Sbjct: 38 LSEARQFRSKEISKSSV 54
>d1vjpa2 d.81.1.3 (A:210-316) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 107
Score = 25.1 bits (55), Expect = 6.4
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 284 LLDRNHFDSKNISKKQV 300
L D SK +K +
Sbjct: 39 LTDDGKNKSKEFTKSSI 55
>d2ge3a1 d.108.1.1 (A:6-169) Probable acetyltransferase Atu2290
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 164
Score = 25.4 bits (54), Expect = 6.5
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 70 EPMQIRRDNLEDALLLYQYLRDVDDEMQWLLEKEP 104
+ + I+ E ++ L V E ++L E
Sbjct: 1 DTVTIKPIRAEHVESFHRALDAVSRERKYLSFLEA 35
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 143
Score = 25.1 bits (54), Expect = 7.7
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 112 GNSLTAVQSLQKKHQALETELASREPV-VSALASRAKQMSR-SAHFAAARI--EGATSAL 167
G SL A+ + Q H LET R+P L + R A + AAR+ +
Sbjct: 2 GGSLAALTAHQACHLPLETFTRHRQPRGAEQLEQCGYPVQRLVALYLAARLSWNQVDQVI 61
Query: 168 QDKLASLRNAASVRRL 183
++ LAS + +
Sbjct: 62 RNALASPGSGGDLGEA 77
>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 24.3 bits (53), Expect = 9.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 284 LLDRNHFDSKNISKKQV 300
L R++ +SK +SK +V
Sbjct: 38 LSARDNKESKVLSKDKV 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.365
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,000,407
Number of extensions: 42983
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 37
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)