BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10638
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91770|NOT2_XENLA Homeobox protein not2 OS=Xenopus laevis GN=not2 PE=2 SV=1
Length = 233
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 23 LSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVW 82
L+P S + K KR+RT+FTPEQLERLE EF +QQYMVG ER+ LA TLNLTE QVKVW
Sbjct: 123 LNPLSWRTGPCKLKRIRTVFTPEQLERLEKEFLKQQYMVGTERVDLASTLNLTETQVKVW 182
Query: 83 FQNRRIKWRKQHLEFQQQRLA 103
FQNRRIKWRKQ LE ++ +L+
Sbjct: 183 FQNRRIKWRKQSLEQKKAKLS 203
>sp|Q06615|NOTO_XENLA Homeobox protein notochord OS=Xenopus laevis GN=noto PE=2 SV=1
Length = 236
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 8 KDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLY 67
K+++L P S ++P S + K KR+RT+FTPEQLE+LE EF +QQYMVG ER+
Sbjct: 112 KERVL-PFSHCPNGAMNPLSWRTGPCKMKRIRTVFTPEQLEKLEKEFLKQQYMVGTERVD 170
Query: 68 LAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQRLA 103
LA TLNLTE QVKVWFQNRRIKWRKQ LE ++ +L+
Sbjct: 171 LASTLNLTETQVKVWFQNRRIKWRKQSLEQKKAKLS 206
>sp|Q17R00|EMX2_BOVIN Homeobox protein EMX2 OS=Bos taurus GN=EMX2 PE=2 SV=1
Length = 253
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LAH+L+LTE QVKVWFQNRR K+++Q
Sbjct: 154 KPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQ 213
Query: 94 HLE 96
LE
Sbjct: 214 KLE 216
>sp|Q04744|EMX2_MOUSE Homeobox protein EMX2 OS=Mus musculus GN=Emx2 PE=2 SV=3
Length = 253
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LAH+L+LTE QVKVWFQNRR K+++Q
Sbjct: 154 KPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQ 213
Query: 94 HLE 96
LE
Sbjct: 214 KLE 216
>sp|Q04743|EMX2_HUMAN Homeobox protein EMX2 OS=Homo sapiens GN=EMX2 PE=1 SV=2
Length = 252
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LAH+L+LTE QVKVWFQNRR K+++Q
Sbjct: 153 KPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQ 212
Query: 94 HLE 96
LE
Sbjct: 213 KLE 215
>sp|Q9PU20|VAX2A_XENLA Ventral anterior homeobox 2a OS=Xenopus laevis GN=vax2-a PE=2 SV=1
Length = 302
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 104 RPKRTRTSFTAEQLYRLELEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 163
Query: 94 HLEFQQQRLAAIKQS 108
++R ++ +S
Sbjct: 164 QSRDSEKRSSSTSES 178
>sp|Q804S6|EMX1_DANRE Homeobox protein EMX1 OS=Danio rerio GN=emx1 PE=2 SV=1
Length = 231
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LA++L+L+E QVKVWFQNRR K+++Q
Sbjct: 132 KPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLANSLSLSETQVKVWFQNRRTKYKRQ 191
Query: 94 HLE 96
LE
Sbjct: 192 KLE 194
>sp|P18488|EMS_DROME Homeotic protein empty spiracles OS=Drosophila melanogaster GN=ems
PE=2 SV=2
Length = 497
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL +LE FE QY+VG ER LA LNL+E QVKVWFQNRR K
Sbjct: 390 KPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTK---- 445
Query: 94 HLEFQQQRLAAIKQSQLNQQQENLHQQSSDQ 124
H QQ+ ++ Q N+H S D+
Sbjct: 446 HKRMQQED----EKGGEGGSQRNMHNGSGDE 472
>sp|Q04742|EMX1_MOUSE Homeobox protein EMX1 OS=Mus musculus GN=Emx1 PE=2 SV=2
Length = 257
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LA +L+L+E QVKVWFQNRR K+++Q
Sbjct: 158 KPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQ 217
Query: 94 HLE 96
LE
Sbjct: 218 KLE 220
>sp|Q04741|EMX1_HUMAN Homeobox protein EMX1 OS=Homo sapiens GN=EMX1 PE=2 SV=2
Length = 257
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LA +L+L+E QVKVWFQNRR K+++Q
Sbjct: 158 KPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQ 217
Query: 94 HLE 96
LE
Sbjct: 218 KLE 220
>sp|Q9C056|NKX62_HUMAN Homeobox protein Nkx-6.2 OS=Homo sapiens GN=NKX6-2 PE=2 SV=2
Length = 277
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
K K R F+ +Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWFQNRR KWRK
Sbjct: 146 GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 205
Query: 93 QHLEFQQQRLAAIKQSQLNQQQENLHQQSSDQHHTSQHQ 131
+H +A+ K+ Q + E L SD ++
Sbjct: 206 RH----AVEMASAKKKQ-DSDAEKLKVGGSDAEDDDEYN 239
>sp|Q9IAX9|VAX2B_XENLA Ventral anterior homeobox 2b OS=Xenopus laevis GN=vax2-b PE=2 SV=1
Length = 294
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 97 RPKRTRTSFTAEQLYRLELEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 156
Query: 94 HLEFQQQRLAAIKQS 108
++R ++ +S
Sbjct: 157 QSRDSEKRSSSTSES 171
>sp|Q6GLB9|EMX1_XENTR Homeobox protein EMX1 OS=Xenopus tropicalis GN=emx1 PE=2 SV=1
Length = 233
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K KR+RT F+P QL RLE FE+ Y+VG ER LA +L+L+E QVKVWFQNRR K+++Q
Sbjct: 134 KPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLASSLSLSETQVKVWFQNRRTKYKRQ 193
Query: 94 HLE 96
LE
Sbjct: 194 KLE 196
>sp|Q801E1|VAX2_DANRE Ventral anterior homeobox 2 OS=Danio rerio GN=vax2 PE=2 SV=1
Length = 307
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 102 RPKRTRTSFTAEQLYRLELEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 161
Query: 94 HLEFQQQRLAAIKQS 108
+ +R ++ +S
Sbjct: 162 QTKDTDKRSSSTSES 176
>sp|O35762|NKX61_RAT Homeobox protein Nkx-6.1 OS=Rattus norvegicus GN=Nkx6-1 PE=2 SV=1
Length = 365
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
K K R F+ +Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWFQNRR KWRK
Sbjct: 235 GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 294
Query: 93 QH 94
+H
Sbjct: 295 KH 296
>sp|A6NJ46|NKX63_HUMAN Homeobox protein Nkx-6.3 OS=Homo sapiens GN=NKX6-3 PE=2 SV=1
Length = 265
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
+P S S K K R FT Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWF
Sbjct: 128 TPDPLSDSIHKKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 187
Query: 84 QNRRIKWRKQ 93
QNRR KWRK+
Sbjct: 188 QNRRTKWRKK 197
>sp|Q60554|NKX61_MESAU Homeobox protein Nkx-6.1 OS=Mesocricetus auratus GN=NKX6-1 PE=1
SV=1
Length = 364
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
K K R F+ +Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWFQNRR KWRK
Sbjct: 234 GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 293
Query: 93 QH 94
+H
Sbjct: 294 KH 295
>sp|Q99MA9|NKX61_MOUSE Homeobox protein Nkx-6.1 OS=Mus musculus GN=Nkx6-1 PE=1 SV=1
Length = 365
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
K K R F+ +Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWFQNRR KWRK
Sbjct: 235 GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 294
Query: 93 QH 94
+H
Sbjct: 295 KH 296
>sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 OS=Homo sapiens GN=NKX6-1 PE=2 SV=2
Length = 367
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
K K R F+ +Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWFQNRR KWRK
Sbjct: 234 GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 293
Query: 93 QH 94
+H
Sbjct: 294 KH 295
>sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 OS=Caenorhabditis elegans GN=ceh-30 PE=2
SV=2
Length = 237
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 13 SPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTL 72
SP D + SP SC KS++ RTIFT +QL+ LE FE+Q+Y+ +R+ LAH +
Sbjct: 80 SPGGD---RMGSPGSCK----KSRKARTIFTDKQLQELENTFEKQKYLSVQDRMDLAHRM 132
Query: 73 NLTEAQVKVWFQNRRIKWRKQ 93
LT+ QVK W+QNRR KW++Q
Sbjct: 133 GLTDTQVKTWYQNRRTKWKRQ 153
>sp|Q9PVN2|VAX1_CHICK Ventral anterior homeobox 1 OS=Gallus gallus GN=VAX1 PE=2 SV=1
Length = 327
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 44/59 (74%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 98 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 156
>sp|Q9JM00|VAX1_RAT Ventral anterior homeobox 1 OS=Rattus norvegicus GN=Vax1 PE=2 SV=1
Length = 336
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
>sp|Q2NKI2|VAX1_MOUSE Ventral anterior homeobox 1 OS=Mus musculus GN=Vax1 PE=2 SV=2
Length = 338
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
>sp|Q5SQQ9|VAX1_HUMAN Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX1 PE=1 SV=1
Length = 334
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
>sp|Q3UHX8|NKX63_MOUSE Homeobox protein Nkx-6.3 OS=Mus musculus GN=Nkx6-3 PE=2 SV=1
Length = 262
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
+P S + K K R FT Q+ LE FE+ +Y+ GPER LA++L +TE+QVKVWF
Sbjct: 129 TPDPLSDTIHKKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 188
Query: 84 QNRRIKWRKQ 93
QNRR KWRK+
Sbjct: 189 QNRRTKWRKK 198
>sp|Q801E0|VAX1_DANRE Ventral anterior homeobox 1 OS=Danio rerio GN=vax1 PE=2 SV=1
Length = 317
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 44/59 (74%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 91 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 149
>sp|Q9JLZ9|VAX2_RAT Ventral anterior homeobox 2 OS=Rattus norvegicus GN=Vax2 PE=2 SV=1
Length = 292
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 44/59 (74%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 159
>sp|A5YC49|NKX63_XENLA Homeobox protein Nkx-6.3 OS=Xenopus laevis GN=nkx6-3 PE=2 SV=1
Length = 254
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 49/71 (69%)
Query: 23 LSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVW 82
LS +S + SS+ K R FT Q+ LE FE+ +Y+ GPER LA +L ++E+QVKVW
Sbjct: 121 LSSASNTEGSSRKKHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAFSLGMSESQVKVW 180
Query: 83 FQNRRIKWRKQ 93
FQNRR KWRK+
Sbjct: 181 FQNRRTKWRKK 191
>sp|Q9DDB0|VAX1B_XENLA Ventral anterior homeobox 1b OS=Xenopus laevis GN=vax1-b PE=2 SV=1
Length = 287
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 88 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 147
>sp|Q9WTP9|VAX2_MOUSE Ventral anterior homeobox 2 OS=Mus musculus GN=Vax2 PE=1 SV=1
Length = 292
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 44/59 (74%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 159
>sp|Q9UIW0|VAX2_HUMAN Ventral anterior homeobox 2 OS=Homo sapiens GN=VAX2 PE=1 SV=1
Length = 290
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER LA LNL+E QVKVWFQNRR K +K
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 160
>sp|A8XJD0|HM30_CAEBR Homeobox protein ceh-30 OS=Caenorhabditis briggsae GN=ceh-30 PE=3
SV=1
Length = 233
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 16 SDLKC--KKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN 73
SDL + SP S S KS++ RTIFT +QL+ LE FE+Q+Y+ +R+ LAH +
Sbjct: 67 SDLSTSPRASSPDRNSPMSKKSRKARTIFTDKQLQELENTFEKQKYLSVQDRMDLAHRMG 126
Query: 74 LTEAQVKVWFQNRRIKWRKQ 93
L++ QVK W+QNRR KW++Q
Sbjct: 127 LSDTQVKTWYQNRRTKWKRQ 146
>sp|A1L2P5|HXD3_XENLA Homeobox protein Hox-D3 OS=Xenopus laevis GN=hoxd3 PE=2 SV=1
Length = 413
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 7 EKDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERL 66
+K+ +P + C++ SP+ SS KRVRT +T QL LE EF +Y+ P R+
Sbjct: 155 QKNSSSTPPAGENCEEKSPTGPSS-----KRVRTAYTSAQLVELEKEFHFNRYLCRPRRV 209
Query: 67 YLAHTLNLTEAQVKVWFQNRRIKWRK 92
+A+ LNLTE Q+K+WFQNRR+K++K
Sbjct: 210 EMANLLNLTERQIKIWFQNRRMKYKK 235
>sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2 SV=2
Length = 544
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 21 KKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVK 80
K S S S S K ++ RT FT QL+ LE FERQ+Y+ ER LAH L+L++ QVK
Sbjct: 285 KSGSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVK 344
Query: 81 VWFQNRRIKWRKQ 93
W+QNRR KW++Q
Sbjct: 345 TWYQNRRTKWKRQ 357
>sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 OS=Caenorhabditis elegans GN=ceh-31 PE=4
SV=2
Length = 260
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90
S K+++ RTIFT +QL+ LE FE+Q+Y+ +R+ LAH + LT+ QVK W+QNRR KW
Sbjct: 90 GSKKARKARTIFTDKQLQELENTFEKQKYLSVQDRMELAHRMGLTDTQVKTWYQNRRTKW 149
Query: 91 RKQ-----HLEFQQQRLAAIKQ 107
++Q L +AA++Q
Sbjct: 150 KRQASVGMDLLHDAGNMAAVQQ 171
>sp|O93528|VAX1A_XENLA Ventral anterior homeobox 1a OS=Xenopus laevis GN=vax1-a PE=2 SV=1
Length = 295
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+ KR RT FT EQL RLE EF+R QY+VG ER L+ LNL+E QVKVWFQNRR K +K
Sbjct: 96 RPKRSRTSFTAEQLYRLEMEFQRCQYVVGRERTDLSRQLNLSETQVKVWFQNRRTKQKKD 155
>sp|P19601|SAX1_CHICK Homeobox protein SAX-1 (Fragment) OS=Gallus gallus GN=SAX1 PE=2
SV=2
Length = 232
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
+S +K +R RT FT EQL LE +F +Y+ ERL LA +L+LTE QVK+WFQNRR K
Sbjct: 60 ASCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 119
Query: 90 WRKQH 94
W+KQH
Sbjct: 120 WKKQH 124
>sp|Q503F2|BARX1_DANRE Homeobox protein BarH-like 1 OS=Danio rerio GN=barx1 PE=2 SV=2
Length = 248
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 22 KLSPSS-CSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVK 80
KL P + S + K +R RT+FT QL LE FE+Q+Y+ P+R+ LA +L L++ QVK
Sbjct: 121 KLDPGADAVSKTKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 180
Query: 81 VWFQNRRIKWRK 92
W+QNRR+KW+K
Sbjct: 181 TWYQNRRMKWKK 192
>sp|Q9HBU1|BARX1_HUMAN Homeobox protein BarH-like 1 OS=Homo sapiens GN=BARX1 PE=1 SV=2
Length = 254
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 19 KCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQ 78
K + P + + K +R RT+FT QL LE FE+Q+Y+ P+R+ LA +L L++ Q
Sbjct: 126 KLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQ 185
Query: 79 VKVWFQNRRIKWRK 92
VK W+QNRR+KW+K
Sbjct: 186 VKTWYQNRRMKWKK 199
>sp|Q8AWZ2|HXA3A_DANRE Homeobox protein Hox-A3a OS=Danio rerio GN=hoxa3a PE=2 SV=1
Length = 410
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 20 CKKLSPSSCSS-----SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNL 74
C +S SC+ S+ SKR RT +T QL LE EF +Y+ P R+ +A+ LNL
Sbjct: 143 CSIISVESCAGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 202
Query: 75 TEAQVKVWFQNRRIKWRK 92
TE Q+K+WFQNRR+K++K
Sbjct: 203 TERQIKIWFQNRRMKYKK 220
>sp|Q15270|NKX11_HUMAN NK1 transcription factor-related protein 1 OS=Homo sapiens
GN=NKX1-1 PE=2 SV=2
Length = 411
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
S S K +R RT FT EQL LE +F+ +Y+ ERL LA +L+LTE QVK+WFQNRR K
Sbjct: 254 SKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 313
Query: 90 WRKQH 94
W+KQ+
Sbjct: 314 WKKQN 318
>sp|P23682|HXB3_CHICK Homeobox protein Hox-B3 OS=Gallus gallus GN=HOXB3 PE=2 SV=2
Length = 399
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 6 NEKDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPER 65
N K K SPS++ + +P SS SKR RT +T QL LE EF +Y+ P R
Sbjct: 134 NSKQKSSSPSTETCSGEKTPPG----SSASKRARTAYTSAQLVELEKEFHFNRYLCRPRR 189
Query: 66 LYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ +A+ LNL+E Q+K+WFQNRR+K++K
Sbjct: 190 VEMANLLNLSERQIKIWFQNRRMKYKK 216
>sp|Q9UMQ3|BARX2_HUMAN Homeobox protein BarH-like 2 OS=Homo sapiens GN=BARX2 PE=1 SV=3
Length = 279
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K +R RTIFT QL LE +F++Q+Y+ P+RL LA +L LT+ QVK W+QNRR+KW+K
Sbjct: 132 KPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKM 191
Query: 94 HLEFQQQ 100
L+ Q+
Sbjct: 192 VLKGGQE 198
>sp|Q9DED6|BAX1B_CHICK Homeobox protein BarH-like 1b OS=Gallus gallus GN=BARX1B PE=2 SV=1
Length = 247
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 22 KLSPSS--CSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQV 79
KL P S + K +R RT+FT QL LE FE+Q+Y+ P+R+ LA +L L++ QV
Sbjct: 120 KLEPGGPETGSKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 179
Query: 80 KVWFQNRRIKWRK 92
K W+QNRR+KW+K
Sbjct: 180 KTWYQNRRMKWKK 192
>sp|O08686|BARX2_MOUSE Homeobox protein BarH-like 2 OS=Mus musculus GN=Barx2 PE=2 SV=2
Length = 283
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K +R RTIFT QL LE +F++Q+Y+ P+RL LA +L LT+ QVK W+QNRR+KW+K
Sbjct: 136 KPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKM 195
Query: 94 HLEFQQQ 100
L+ Q+
Sbjct: 196 VLKGGQE 202
>sp|O42370|HXD3A_DANRE Homeobox protein Hox-D3a OS=Danio rerio GN=hoxd3a PE=2 SV=2
Length = 396
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 14 PSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN 73
P++ C SP SKRVRT +T QL LE EF +Y+ P R+ +A+ LN
Sbjct: 145 PAAGETCDDKSPPG-----PASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 199
Query: 74 LTEAQVKVWFQNRRIKWRK 92
LTE Q+K+WFQNRR+K++K
Sbjct: 200 LTERQIKIWFQNRRMKYKK 218
>sp|P42580|NKX12_MOUSE NK1 transcription factor-related protein 2 OS=Mus musculus
GN=Nkx1-2 PE=1 SV=1
Length = 305
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS +K +R RT FT EQL LE +F +Y+ ERL LA +L+LTE QVK+WFQNRR K
Sbjct: 151 SSCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 210
Query: 90 WRKQH 94
W+KQ+
Sbjct: 211 WKKQN 215
>sp|P09027|HXD3_MOUSE Homeobox protein Hox-D3 OS=Mus musculus GN=Hoxd3 PE=2 SV=4
Length = 433
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 6 NEKDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPER 65
N K K +S C+ SP SKRVRT +T QL LE EF +Y+ P R
Sbjct: 171 NSKQKNSCATSGENCEDKSPPG-----PASKRVRTAYTSAQLVELEKEFHFNRYLCRPRR 225
Query: 66 LYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQRLAAIKQSQLNQQQE 115
+ +A+ LNLTE Q+K+WFQNRR+K++K Q+ I S Q E
Sbjct: 226 VEMANLLNLTERQIKIWFQNRRMKYKK------DQKAKGILHSPAGQSPE 269
>sp|Q1KKX7|HXB3A_TAKRU Homeobox protein Hox-B3a OS=Takifugu rubripes GN=hoxb3a PE=3 SV=1
Length = 474
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 8 KDKLLSPSSDLKCKKLSPSS-----CSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVG 62
K K SPS++ S SS SS+ SKR RT +T QL LE EF +Y+
Sbjct: 180 KQKTCSPSNNSGNGAESGSSGEKSPTGGSSASSKRARTAYTSAQLVELEKEFHFNRYLCR 239
Query: 63 PERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
P R+ +A+ LNL+E Q+K+WFQNRR+K++K
Sbjct: 240 PRRVEMANLLNLSERQIKIWFQNRRMKYKK 269
>sp|Q9W6D8|BARX1_CHICK Homeobox protein BarH-like 1 (Fragment) OS=Gallus gallus GN=BARX1
PE=2 SV=1
Length = 207
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 29 SSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88
S + K +R RT+FT QL LE FE+Q+Y+ P+R+ LA +L L++ QVK W+QNRR+
Sbjct: 89 GSKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 148
Query: 89 KWRK 92
KW+K
Sbjct: 149 KWKK 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,978,566
Number of Sequences: 539616
Number of extensions: 1679931
Number of successful extensions: 20904
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 10830
Number of HSP's gapped (non-prelim): 6123
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)