Query psy10638
Match_columns 140
No_of_seqs 112 out of 1106
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:36:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 6.4E-20 2.2E-24 119.1 7.2 66 29-94 11-76 (80)
2 2kt0_A Nanog, homeobox protein 99.8 7.2E-20 2.5E-24 119.7 6.9 66 30-95 17-82 (84)
3 2da3_A Alpha-fetoprotein enhan 99.8 6.2E-20 2.1E-24 118.9 5.8 67 28-94 10-76 (80)
4 2cue_A Paired box protein PAX6 99.8 2.2E-19 7.6E-24 116.5 7.6 66 32-97 4-69 (80)
5 1puf_A HOX-1.7, homeobox prote 99.8 4.3E-19 1.5E-23 114.4 8.2 67 30-96 8-74 (77)
6 1wh5_A ZF-HD homeobox family p 99.8 1.6E-19 5.6E-24 117.4 6.2 63 30-92 12-78 (80)
7 1nk2_P Homeobox protein VND; h 99.8 3.7E-19 1.3E-23 114.7 7.7 66 31-96 5-70 (77)
8 2dmu_A Homeobox protein goosec 99.8 2.1E-19 7.2E-24 113.8 6.4 64 31-94 3-66 (70)
9 3a01_A Homeodomain-containing 99.8 2.1E-19 7E-24 120.0 6.6 72 31-102 13-84 (93)
10 2dms_A Homeobox protein OTX2; 99.8 2.4E-19 8.3E-24 116.3 6.6 65 31-95 3-67 (80)
11 2cra_A Homeobox protein HOX-B1 99.8 1.5E-19 5.3E-24 114.5 5.5 64 31-94 3-66 (70)
12 2dmq_A LIM/homeobox protein LH 99.8 3.9E-19 1.3E-23 115.2 7.3 64 32-95 4-67 (80)
13 2da2_A Alpha-fetoprotein enhan 99.8 1.7E-19 5.7E-24 114.2 5.3 64 31-94 3-66 (70)
14 2da1_A Alpha-fetoprotein enhan 99.8 1.8E-19 6.1E-24 114.0 5.1 64 31-94 3-66 (70)
15 2e1o_A Homeobox protein PRH; D 99.8 5E-19 1.7E-23 112.1 7.0 63 32-94 4-66 (70)
16 2vi6_A Homeobox protein nanog; 99.8 1.9E-19 6.6E-24 111.4 4.3 60 34-93 2-61 (62)
17 2djn_A Homeobox protein DLX-5; 99.8 3.1E-19 1E-23 113.1 4.9 64 31-94 3-66 (70)
18 2h1k_A IPF-1, pancreatic and d 99.8 4.6E-19 1.6E-23 110.1 5.7 61 34-94 2-62 (63)
19 1wh7_A ZF-HD homeobox family p 99.8 4.3E-19 1.5E-23 115.4 5.7 61 31-92 13-78 (80)
20 1fjl_A Paired protein; DNA-bin 99.8 6.9E-19 2.4E-23 114.4 6.4 65 31-95 14-78 (81)
21 2m0c_A Homeobox protein arista 99.8 4.7E-19 1.6E-23 113.3 5.5 65 31-95 5-69 (75)
22 1yz8_P Pituitary homeobox 2; D 99.8 5.3E-19 1.8E-23 111.4 4.9 62 34-95 2-63 (68)
23 2hdd_A Protein (engrailed home 99.8 6.5E-19 2.2E-23 108.7 5.1 58 35-92 3-60 (61)
24 2da4_A Hypothetical protein DK 99.8 4.9E-19 1.7E-23 114.8 4.7 64 31-94 4-71 (80)
25 1ig7_A Homeotic protein MSX-1; 99.8 1.2E-18 4E-23 106.4 6.0 57 36-92 1-57 (58)
26 1zq3_P PRD-4, homeotic bicoid 99.8 1.4E-18 4.6E-23 109.5 6.1 61 35-95 2-62 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.7 1.4E-18 4.8E-23 109.5 5.8 61 35-95 2-62 (68)
28 2l7z_A Homeobox protein HOX-A1 99.7 1.6E-18 5.6E-23 110.6 6.0 63 32-94 4-66 (73)
29 2r5y_A Homeotic protein sex co 99.7 8.3E-19 2.8E-23 115.7 4.8 64 31-94 24-87 (88)
30 1ahd_P Antennapedia protein mu 99.7 1.2E-18 4E-23 109.9 5.1 61 35-95 2-62 (68)
31 1bw5_A ISL-1HD, insulin gene e 99.7 8.4E-19 2.9E-23 109.8 4.2 61 34-94 2-62 (66)
32 1b8i_A Ultrabithorax, protein 99.7 1.2E-18 4E-23 113.5 4.9 63 32-94 17-79 (81)
33 1jgg_A Segmentation protein EV 99.7 2E-18 6.9E-23 106.1 5.5 58 36-93 2-59 (60)
34 3nar_A ZHX1, zinc fingers and 99.7 1.2E-18 4.2E-23 116.7 4.7 68 30-97 20-87 (96)
35 3a02_A Homeobox protein arista 99.7 2.3E-18 7.7E-23 105.9 4.5 58 38-95 2-59 (60)
36 1b72_A Protein (homeobox prote 99.7 2.1E-18 7.1E-23 115.8 4.7 65 32-96 31-95 (97)
37 2cuf_A FLJ21616 protein; homeo 99.7 5.3E-18 1.8E-22 113.4 6.5 65 31-95 3-82 (95)
38 3rkq_A Homeobox protein NKX-2. 99.7 3.3E-18 1.1E-22 104.1 4.9 57 35-91 2-58 (58)
39 2k40_A Homeobox expressed in E 99.7 2.1E-18 7.2E-23 108.2 4.1 60 36-95 2-61 (67)
40 2da5_A Zinc fingers and homeob 99.7 6.4E-18 2.2E-22 108.4 6.1 59 37-95 9-67 (75)
41 3a03_A T-cell leukemia homeobo 99.7 5.1E-18 1.8E-22 103.0 5.1 54 40-93 2-55 (56)
42 2dn0_A Zinc fingers and homeob 99.7 3.3E-18 1.1E-22 110.0 4.4 61 34-94 7-67 (76)
43 1akh_A Protein (mating-type pr 99.7 3.3E-18 1.1E-22 105.4 4.3 59 33-91 3-61 (61)
44 1uhs_A HOP, homeodomain only p 99.7 7.5E-18 2.6E-22 107.2 6.0 59 36-94 2-61 (72)
45 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.7E-22 106.6 6.8 65 31-95 3-70 (73)
46 2hi3_A Homeodomain-only protei 99.7 1.1E-17 3.7E-22 106.7 6.3 59 36-94 3-62 (73)
47 2ly9_A Zinc fingers and homeob 99.7 1.1E-17 3.9E-22 106.7 5.7 61 34-94 5-65 (74)
48 2ecc_A Homeobox and leucine zi 99.7 1.2E-17 4.1E-22 107.4 5.6 57 38-94 6-62 (76)
49 1e3o_C Octamer-binding transcr 99.7 4.4E-18 1.5E-22 123.7 3.6 62 32-93 98-159 (160)
50 1wi3_A DNA-binding protein SAT 99.7 1.6E-17 5.5E-22 104.0 5.6 59 31-89 3-62 (71)
51 2da6_A Hepatocyte nuclear fact 99.7 5.5E-17 1.9E-21 109.6 7.0 65 32-96 3-88 (102)
52 1puf_B PRE-B-cell leukemia tra 99.7 1.8E-17 6.2E-22 105.6 4.3 61 36-96 2-65 (73)
53 1du6_A PBX1, homeobox protein 99.7 1.1E-17 3.9E-22 103.9 2.9 58 35-92 3-63 (64)
54 2dmn_A Homeobox protein TGIF2L 99.7 7.6E-17 2.6E-21 105.3 6.8 63 32-94 4-69 (83)
55 1b72_B Protein (PBX1); homeodo 99.7 4.6E-17 1.6E-21 106.9 5.6 62 36-97 2-66 (87)
56 1au7_A Protein PIT-1, GHF-1; c 99.7 2.5E-17 8.4E-22 118.1 4.5 63 31-93 83-145 (146)
57 2xsd_C POU domain, class 3, tr 99.7 1.3E-17 4.6E-22 121.7 2.5 66 31-96 95-160 (164)
58 3d1n_I POU domain, class 6, tr 99.7 8.8E-17 3E-21 115.7 5.9 62 31-92 89-150 (151)
59 1k61_A Mating-type protein alp 99.7 9.5E-17 3.2E-21 98.5 5.1 55 39-93 2-59 (60)
60 2cqx_A LAG1 longevity assuranc 99.7 3E-17 1E-21 104.6 2.9 60 35-94 8-68 (72)
61 2dmp_A Zinc fingers and homeob 99.7 1.7E-16 5.8E-21 105.0 6.4 54 41-94 19-72 (89)
62 2ecb_A Zinc fingers and homeob 99.7 1.8E-16 6.2E-21 104.9 6.5 54 41-94 17-70 (89)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 1.8E-16 6.1E-21 104.2 5.7 59 33-91 25-86 (87)
64 1lfb_A Liver transcription fac 99.6 9.6E-17 3.3E-21 108.2 3.1 66 32-97 6-92 (99)
65 3nau_A Zinc fingers and homeob 99.6 3E-16 1E-20 98.0 4.9 52 43-94 12-63 (66)
66 1le8_B Mating-type protein alp 99.6 2.7E-16 9.3E-21 102.6 5.0 59 37-95 4-65 (83)
67 2l9r_A Homeobox protein NKX-3. 99.6 2E-16 6.7E-21 100.1 3.7 55 40-94 9-63 (69)
68 3l1p_A POU domain, class 5, tr 99.6 2.8E-16 9.7E-21 113.6 4.7 61 33-93 94-154 (155)
69 2e19_A Transcription factor 8; 99.6 2.9E-16 1E-20 97.9 3.5 52 41-92 9-60 (64)
70 1x2m_A LAG1 longevity assuranc 99.6 2E-16 6.8E-21 98.6 2.0 50 44-93 9-59 (64)
71 2d5v_A Hepatocyte nuclear fact 99.6 5.1E-16 1.8E-20 112.9 3.9 66 31-96 93-158 (164)
72 3k2a_A Homeobox protein MEIS2; 99.5 3.8E-15 1.3E-19 93.5 4.2 59 40-98 3-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 1.6E-14 5.6E-19 107.8 3.0 61 32-92 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.4 8.5E-14 2.9E-18 87.5 4.1 46 44-89 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 1.1E-12 3.8E-17 86.4 5.9 56 41-96 11-69 (89)
76 2h8r_A Hepatocyte nuclear fact 99.4 4.9E-13 1.7E-17 101.3 4.6 60 31-90 138-218 (221)
77 1mh3_A Maltose binding-A1 home 99.2 5.6E-12 1.9E-16 101.4 3.1 55 37-91 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.6 6.2E-09 2.1E-13 57.6 0.5 21 77-97 1-21 (37)
79 2ys9_A Homeobox and leucine zi 95.7 0.0089 3E-07 37.1 3.2 42 45-86 16-57 (70)
80 2glo_A Brinker CG9653-PA; prot 82.8 1.9 6.5E-05 24.7 4.0 45 39-84 3-47 (59)
81 1hlv_A CENP-B, major centromer 75.0 5.7 0.00019 26.0 5.0 48 38-88 4-51 (131)
82 3hug_A RNA polymerase sigma fa 74.9 4.6 0.00016 25.1 4.3 47 42-93 38-84 (92)
83 2elh_A CG11849-PA, LD40883P; s 74.8 4.6 0.00016 25.0 4.2 44 36-84 17-60 (87)
84 3bni_A Putative TETR-family tr 67.6 2.7 9.2E-05 29.9 2.1 40 49-89 51-90 (229)
85 1jko_C HIN recombinase, DNA-in 67.5 4.3 0.00015 21.6 2.6 40 42-86 6-45 (52)
86 1tc3_C Protein (TC3 transposas 67.4 8.7 0.0003 19.9 3.8 40 41-85 5-44 (51)
87 2o8x_A Probable RNA polymerase 65.3 4.9 0.00017 23.1 2.6 47 41-92 15-61 (70)
88 2hxi_A Putative transcriptiona 62.8 6.6 0.00023 28.6 3.5 49 39-88 26-75 (241)
89 2qko_A Possible transcriptiona 60.0 5.1 0.00017 27.8 2.4 41 47-88 34-74 (215)
90 1s7o_A Hypothetical UPF0122 pr 55.5 20 0.00068 23.4 4.5 49 41-94 22-70 (113)
91 2jn6_A Protein CGL2762, transp 54.9 16 0.00055 22.6 3.9 42 40-85 4-46 (97)
92 3ulq_B Transcriptional regulat 54.1 15 0.0005 22.9 3.6 46 38-89 26-71 (90)
93 1p4w_A RCSB; solution structur 52.2 21 0.00072 22.7 4.2 48 39-92 32-79 (99)
94 1ku3_A Sigma factor SIGA; heli 51.4 16 0.00054 21.4 3.3 50 41-91 10-59 (73)
95 3mzy_A RNA polymerase sigma-H 50.6 20 0.00068 23.5 4.0 47 41-93 109-155 (164)
96 1rp3_A RNA polymerase sigma fa 50.5 14 0.00047 26.1 3.4 47 41-92 187-233 (239)
97 1xsv_A Hypothetical UPF0122 pr 50.4 24 0.0008 22.9 4.3 49 41-94 25-73 (113)
98 2q24_A Putative TETR family tr 49.4 11 0.00038 25.5 2.7 43 45-89 19-61 (194)
99 1fse_A GERE; helix-turn-helix 49.3 21 0.00073 20.4 3.6 48 40-93 10-57 (74)
100 2p7v_B Sigma-70, RNA polymeras 48.9 10 0.00034 21.9 2.0 50 41-91 5-54 (68)
101 1je8_A Nitrate/nitrite respons 48.3 16 0.00054 22.1 3.0 49 40-94 20-68 (82)
102 3q0w_A HTH-type transcriptiona 48.0 9.1 0.00031 27.1 2.1 41 50-91 53-93 (236)
103 3c57_A Two component transcrip 46.1 15 0.00053 22.8 2.7 48 40-93 26-73 (95)
104 2hku_A A putative transcriptio 45.5 8.3 0.00029 26.7 1.5 42 47-90 26-67 (215)
105 1or7_A Sigma-24, RNA polymeras 44.9 24 0.00081 24.1 3.8 47 42-93 141-187 (194)
106 2g7l_A TETR-family transcripti 43.8 16 0.00055 26.6 2.9 48 39-87 16-64 (243)
107 1tty_A Sigma-A, RNA polymerase 43.6 18 0.00061 22.1 2.7 52 41-93 18-69 (87)
108 1x3u_A Transcriptional regulat 43.0 27 0.00092 20.3 3.4 47 42-94 17-63 (79)
109 2rn7_A IS629 ORFA; helix, all 40.3 43 0.0015 20.9 4.3 45 40-84 5-52 (108)
110 2qwt_A Transcriptional regulat 40.1 21 0.00072 24.3 2.9 39 49-89 21-59 (196)
111 3fiw_A Putative TETR-family tr 40.1 16 0.00053 25.9 2.3 41 47-88 31-71 (211)
112 2i10_A Putative TETR transcrip 40.1 24 0.00081 24.2 3.2 45 44-89 14-58 (202)
113 1iuf_A Centromere ABP1 protein 40.0 33 0.0011 23.0 3.9 51 36-86 6-60 (144)
114 2q1z_A RPOE, ECF SIGE; ECF sig 39.9 15 0.00052 24.9 2.1 28 65-92 154-181 (184)
115 3g1o_A Transcriptional regulat 39.4 10 0.00035 27.1 1.2 41 50-91 52-92 (255)
116 3g7r_A Putative transcriptiona 39.4 17 0.0006 25.2 2.4 40 50-90 44-83 (221)
117 2kvr_A Ubiquitin carboxyl-term 38.1 10 0.00035 25.7 0.9 23 65-87 72-94 (130)
118 2hxo_A Putative TETR-family tr 37.8 36 0.0012 24.4 4.0 47 40-87 14-61 (237)
119 3bru_A Regulatory protein, TET 37.0 18 0.00063 24.7 2.2 42 47-89 36-77 (222)
120 3dcf_A Transcriptional regulat 35.6 19 0.00064 24.5 2.0 41 48-89 38-78 (218)
121 2rnj_A Response regulator prot 35.2 21 0.00073 21.8 2.1 49 40-94 28-76 (91)
122 2rgt_A Fusion of LIM/homeobox 34.9 0.34 1.1E-05 34.2 -7.4 31 33-63 134-164 (169)
123 2hin_A GP39, repressor protein 34.4 21 0.00072 21.5 1.9 25 65-89 13-37 (71)
124 3aqt_A Bacterial regulatory pr 34.4 8.7 0.0003 27.5 0.1 42 49-91 54-95 (245)
125 3kz9_A SMCR; transcriptional r 33.6 39 0.0013 22.5 3.4 40 49-89 25-64 (206)
126 2rae_A Transcriptional regulat 32.7 35 0.0012 23.0 3.1 42 47-89 23-64 (207)
127 2x48_A CAG38821; archeal virus 32.5 16 0.00054 20.0 1.0 36 44-84 18-53 (55)
128 3v6g_A Probable transcriptiona 32.1 24 0.00082 24.5 2.2 41 47-88 20-60 (208)
129 2rek_A Putative TETR-family tr 31.6 21 0.00071 24.2 1.7 42 47-90 22-63 (199)
130 2iai_A Putative transcriptiona 31.3 41 0.0014 23.4 3.3 43 46-89 35-77 (230)
131 2jpc_A SSRB; DNA binding prote 31.1 17 0.00058 20.2 1.0 30 65-94 16-45 (61)
132 2v57_A TETR family transcripti 30.8 33 0.0011 22.8 2.6 37 51-90 24-60 (190)
133 3jsj_A Putative TETR-family tr 30.7 30 0.001 23.0 2.4 43 46-90 14-56 (190)
134 2x7l_M HIV REV; nuclear export 30.3 42 0.0014 22.3 2.9 37 48-98 16-52 (115)
135 2pmy_A RAS and EF-hand domain- 30.2 27 0.00092 20.9 1.9 45 40-84 19-68 (91)
136 1fi6_A EH domain protein REPS1 29.1 48 0.0016 20.0 3.0 44 41-84 2-50 (92)
137 3i5g_B Myosin regulatory light 28.6 1.2E+02 0.004 20.0 5.2 38 39-76 7-49 (153)
138 1u78_A TC3 transposase, transp 28.3 79 0.0027 20.1 4.2 41 40-85 5-45 (141)
139 3lph_A Protein REV; helix-loop 28.0 70 0.0024 19.5 3.4 38 47-98 18-55 (72)
140 1rzs_A Antirepressor, regulato 27.9 24 0.00081 20.1 1.2 19 65-83 13-31 (61)
141 2xi8_A Putative transcription 27.7 22 0.00074 19.6 1.0 23 65-87 17-39 (66)
142 3t72_q RNA polymerase sigma fa 27.3 91 0.0031 19.7 4.1 52 41-93 19-70 (99)
143 3ccy_A Putative TETR-family tr 26.6 64 0.0022 21.7 3.6 42 47-89 20-61 (203)
144 3kkd_A Transcriptional regulat 26.5 21 0.00072 25.0 1.0 40 49-89 43-82 (237)
145 2r1j_L Repressor protein C2; p 26.0 25 0.00084 19.5 1.1 24 65-88 21-44 (68)
146 2eqr_A N-COR1, N-COR, nuclear 25.8 98 0.0033 17.6 5.4 52 32-87 5-58 (61)
147 3f1b_A TETR-like transcription 25.8 27 0.00091 23.4 1.4 40 49-89 22-61 (203)
148 2oer_A Probable transcriptiona 25.7 34 0.0012 23.5 2.0 43 46-89 26-71 (214)
149 2pz9_A Putative regulatory pro 25.6 16 0.00054 25.6 0.2 42 47-89 36-77 (226)
150 3bd1_A CRO protein; transcript 25.4 22 0.00077 20.8 0.8 23 65-87 14-36 (79)
151 3rd3_A Probable transcriptiona 24.8 39 0.0013 22.4 2.1 42 47-89 16-57 (197)
152 3clo_A Transcriptional regulat 24.5 89 0.003 22.7 4.2 49 40-94 196-244 (258)
153 1t33_A Putative transcriptiona 24.4 28 0.00095 23.9 1.3 41 48-90 19-59 (224)
154 1zug_A Phage 434 CRO protein; 24.3 27 0.00091 19.6 1.0 24 65-88 19-42 (71)
155 3bs3_A Putative DNA-binding pr 24.1 27 0.00094 19.9 1.1 23 65-87 26-48 (76)
156 1pdn_C Protein (PRD paired); p 24.0 1.1E+02 0.0039 18.8 4.2 44 41-84 75-125 (128)
157 1pb6_A Hypothetical transcript 23.9 27 0.00092 23.6 1.1 40 49-89 26-65 (212)
158 2zcx_A SCO7815, TETR-family tr 23.8 33 0.0011 24.2 1.6 43 48-91 30-72 (231)
159 2xdn_A HTH-type transcriptiona 23.3 59 0.002 22.0 2.9 40 49-89 19-58 (210)
160 3on2_A Probable transcriptiona 23.1 36 0.0012 22.5 1.7 43 47-90 18-60 (199)
161 3qbm_A TETR transcriptional re 23.0 57 0.0019 21.5 2.7 41 49-90 15-55 (199)
162 2zcm_A Biofilm operon icaabcd 22.9 60 0.002 21.6 2.8 44 45-89 11-54 (192)
163 1c07_A Protein (epidermal grow 22.6 59 0.002 19.7 2.5 44 41-84 3-51 (95)
164 2fd5_A Transcriptional regulat 22.6 83 0.0028 20.5 3.5 41 49-90 15-55 (180)
165 3omt_A Uncharacterized protein 22.4 33 0.0011 19.5 1.2 23 65-87 24-46 (73)
166 3ppb_A Putative TETR family tr 22.2 66 0.0023 21.0 2.9 43 46-89 14-56 (195)
167 2k27_A Paired box protein PAX- 22.1 1.3E+02 0.0045 19.8 4.5 46 40-85 82-134 (159)
168 1adr_A P22 C2 repressor; trans 21.8 33 0.0011 19.4 1.1 24 65-88 21-44 (76)
169 2oi8_A Putative regulatory pro 21.6 42 0.0014 23.4 1.8 41 49-90 24-64 (216)
170 2lfw_A PHYR sigma-like domain; 21.4 32 0.0011 23.0 1.1 47 41-92 93-139 (157)
171 2iu5_A DHAS, YCEG, HTH-type dh 21.2 66 0.0022 21.5 2.7 42 47-89 19-60 (195)
172 2q0o_A Probable transcriptiona 21.1 90 0.0031 22.3 3.6 47 40-92 174-220 (236)
173 2fq4_A Transcriptional regulat 21.0 64 0.0022 21.6 2.6 39 49-88 20-58 (192)
174 1j9i_A GPNU1 DBD;, terminase s 21.0 43 0.0015 19.3 1.5 23 65-87 5-27 (68)
175 1r69_A Repressor protein CI; g 21.0 35 0.0012 18.9 1.0 24 65-88 17-40 (69)
176 3bqz_B HTH-type transcriptiona 20.9 68 0.0023 21.1 2.8 43 47-90 8-50 (194)
177 2jml_A DNA binding domain/tran 20.9 37 0.0013 20.3 1.2 20 65-84 8-27 (81)
178 3vib_A MTRR; helix-turn-helix 20.9 65 0.0022 21.8 2.7 39 49-88 18-56 (210)
179 2b5a_A C.BCLI; helix-turn-heli 20.8 35 0.0012 19.4 1.0 23 65-87 26-48 (77)
180 3him_A Probable transcriptiona 20.7 67 0.0023 21.3 2.7 42 47-89 22-63 (211)
181 8tfv_A Protein (thanatin); bac 20.7 22 0.00076 16.1 0.1 13 76-88 3-15 (21)
182 3cdl_A Transcriptional regulat 20.6 73 0.0025 21.5 2.9 38 50-88 18-55 (203)
183 3crj_A Transcription regulator 20.5 68 0.0023 21.7 2.7 41 48-89 21-61 (199)
184 3b81_A Transcriptional regulat 20.5 68 0.0023 21.3 2.7 43 48-91 18-60 (203)
185 3gzi_A Transcriptional regulat 20.4 73 0.0025 21.4 2.9 40 49-89 25-64 (218)
186 2yve_A Transcriptional regulat 20.1 77 0.0026 21.1 2.9 43 47-90 10-52 (185)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=119.10 Aligned_cols=66 Identities=47% Similarity=0.857 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 29 SSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 29 ~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
+...++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 334567788999999999999999999999999999999999999999999999999999999865
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=7.2e-20 Score=119.72 Aligned_cols=66 Identities=36% Similarity=0.573 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 30 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
....+.++.|+.|+..|+.+|+.+|..++||+..++..||..|||++.+|++||+|||+++|+..+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345667889999999999999999999999999999999999999999999999999999998753
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-20 Score=118.86 Aligned_cols=67 Identities=34% Similarity=0.451 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 28 CSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 28 ~~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.+....+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3345567888999999999999999999999999999999999999999999999999999999865
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.2e-19 Score=116.52 Aligned_cols=66 Identities=47% Similarity=0.705 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEF 97 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~ 97 (140)
.+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 345778899999999999999999999999999999999999999999999999999999987543
No 5
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=4.3e-19 Score=114.41 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 30 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
...++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+.
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4456678889999999999999999999999999999999999999999999999999999998754
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=1.6e-19 Score=117.37 Aligned_cols=63 Identities=29% Similarity=0.292 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 30 SSSSKSKRVRTIFTPEQLERLEAEFER----QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 30 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~----~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
...++.+|.|+.|+..|+..|+..|+. ++||+..+++.||..|||++.+|+|||+|||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 12 AGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345678889999999999999999999 999999999999999999999999999999999874
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=3.7e-19 Score=114.68 Aligned_cols=66 Identities=41% Similarity=0.651 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
.+.+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 445677889999999999999999999999999999999999999999999999999999987643
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=113.76 Aligned_cols=64 Identities=48% Similarity=0.742 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 3445778899999999999999999999999999999999999999999999999999999875
No 9
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=2.1e-19 Score=119.95 Aligned_cols=72 Identities=46% Similarity=0.730 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHHHHHHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQRL 102 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~~~~~~ 102 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..........
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~ 84 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAER 84 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHH
Confidence 445677889999999999999999999999999999999999999999999999999999998765544433
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.4e-19 Score=116.30 Aligned_cols=65 Identities=45% Similarity=0.598 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999763
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.5e-19 Score=114.45 Aligned_cols=64 Identities=31% Similarity=0.587 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4456778899999999999999999999999999999999999999999999999999999865
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=115.20 Aligned_cols=64 Identities=34% Similarity=0.507 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
.++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 4557788999999999999999999999999999999999999999999999999999999763
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=114.18 Aligned_cols=64 Identities=39% Similarity=0.462 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4556788899999999999999999999999999999999999999999999999999999865
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=114.03 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.++.|+.|+..|+.+|+.+|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4456788899999999999999999999999999999999999999999999999999999865
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=5e-19 Score=112.09 Aligned_cols=63 Identities=48% Similarity=0.753 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 345667889999999999999999999999999999999999999999999999999999875
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=1.9e-19 Score=111.42 Aligned_cols=60 Identities=37% Similarity=0.636 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 34 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999985
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=113.07 Aligned_cols=64 Identities=45% Similarity=0.726 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4456788899999999999999999999999999999999999999999999999999998864
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=4.6e-19 Score=110.06 Aligned_cols=61 Identities=51% Similarity=0.858 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 34 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3567899999999999999999999999999999999999999999999999999999864
No 19
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=4.3e-19 Score=115.42 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFER-----QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~-----~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
...+.+|.||.|+..|+..|+ .|.. ++||+..+++.||..|||++.+|+|||+|||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 455678899999999999999 8999 999999999999999999999999999999999874
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=6.9e-19 Score=114.38 Aligned_cols=65 Identities=51% Similarity=0.705 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34567888999999999999999999999999999999999999999999999999999999764
No 21
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-19 Score=113.30 Aligned_cols=65 Identities=49% Similarity=0.708 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
..++.++.|+.|+..++.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999999999999999999998764
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.76 E-value=5.3e-19 Score=111.35 Aligned_cols=62 Identities=50% Similarity=0.763 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 34 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999999874
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=6.5e-19 Score=108.68 Aligned_cols=58 Identities=47% Similarity=0.794 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5678999999999999999999999999999999999999999999999999999987
No 24
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=114.85 Aligned_cols=64 Identities=27% Similarity=0.342 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQ----QYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~----~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.++.|+.|+..|+.+|+.+|..+ +||+..++..||..|||++.+|++||+|||+|+|+..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456678899999999999999999999 9999999999999999999999999999999999854
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.2e-18 Score=106.38 Aligned_cols=57 Identities=47% Similarity=0.736 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999987
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=109.53 Aligned_cols=61 Identities=39% Similarity=0.642 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999999999999999764
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=109.48 Aligned_cols=61 Identities=41% Similarity=0.720 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
+++.|+.|+..++.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999999764
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=1.6e-18 Score=110.63 Aligned_cols=63 Identities=35% Similarity=0.582 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 445778899999999999999999999999999999999999999999999999999999865
No 29
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.75 E-value=8.3e-19 Score=115.74 Aligned_cols=64 Identities=47% Similarity=0.833 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 3456778899999999999999999999999999999999999999999999999999999864
No 30
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=1.2e-18 Score=109.86 Aligned_cols=61 Identities=46% Similarity=0.790 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999999999763
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=8.4e-19 Score=109.78 Aligned_cols=61 Identities=30% Similarity=0.449 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 34 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3678899999999999999999999999999999999999999999999999999999865
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=1.2e-18 Score=113.45 Aligned_cols=63 Identities=41% Similarity=0.687 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++||..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345678899999999999999999999999999999999999999999999999999999875
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=2e-18 Score=106.13 Aligned_cols=58 Identities=53% Similarity=0.852 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5778999999999999999999999999999999999999999999999999999985
No 34
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=116.74 Aligned_cols=68 Identities=29% Similarity=0.446 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHH
Q psy10638 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEF 97 (140)
Q Consensus 30 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~ 97 (140)
.+....++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+....-
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34455667899999999999999999999999999999999999999999999999999999976443
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=2.3e-18 Score=105.89 Aligned_cols=58 Identities=50% Similarity=0.706 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 38 VRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 38 ~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999998753
No 36
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.1e-18 Score=115.77 Aligned_cols=65 Identities=45% Similarity=0.685 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
.+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+..+.
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 35677889999999999999999999999999999999999999999999999999999998653
No 37
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.3e-18 Score=113.37 Aligned_cols=65 Identities=29% Similarity=0.414 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcC---------------CCcchhhhcccchhhHHHHHhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN---------------LTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lg---------------l~~~qV~vWFqNrR~k~kk~~~ 95 (140)
..++.+|.|+.|+..++.+|+.+|..++||+..+++.||..|| |++.+|++||+|||+++|++..
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4456788999999999999999999999999999999999999 9999999999999999999874
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=104.08 Aligned_cols=57 Identities=46% Similarity=0.776 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
+++.|+.|+..++.+|+..|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 457789999999999999999999999999999999999999999999999999875
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=108.25 Aligned_cols=60 Identities=40% Similarity=0.548 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678899999999999999999999999999999999999999999999999999998764
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.4e-18 Score=108.43 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 37 RVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 37 r~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
+.|..|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||+++|+...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999998763
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=5.1e-18 Score=103.01 Aligned_cols=54 Identities=54% Similarity=0.882 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
|.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999986
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=109.96 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 34 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
...+.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3445588999999999999999999999999999999999999999999999999999865
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=3.3e-18 Score=105.36 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 33 ~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
.+.++.|+.|+..++.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999875
No 44
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=7.5e-18 Score=107.18 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 36 KRVRTIFTPEQLERLEAEFER-QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F~~-~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.+.|+.|+..|+.+|+..|.. ++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356889999999999999996 99999999999999999999999999999999999976
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-17 Score=106.63 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFER---QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
..++.++.|+.|+..++.+|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++++...
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 34567788999999999999999987 999999999999999999999999999999999998753
No 46
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=106.71 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 36 KRVRTIFTPEQLERLEAEFER-QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F~~-~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 466899999999999999995 99999999999999999999999999999999999976
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=106.73 Aligned_cols=61 Identities=28% Similarity=0.438 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 34 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4567889999999999999999999999999999999999999999999999999999865
No 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.2e-17 Score=107.40 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=53.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 38 VRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 38 ~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.|+.|+.+|+.+|+..|..++||+..+++.||..+||++.+|++||+|+|+++|+..
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 345699999999999999999999999999999999999999999999999999875
No 49
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=4.4e-18 Score=123.68 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
..+++|.|+.|+..|+.+|+..|..++||+..++..||..+||++++|++||+|||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999985
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.6e-17 Score=103.99 Aligned_cols=59 Identities=27% Similarity=0.293 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFER-QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~-~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+.+.++|.||.|+.+|+.+|+..|.. ++||+...++.||..+||++++|++||||+|--
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 45578899999999999999999999 999999999999999999999999999999864
No 51
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=109.60 Aligned_cols=65 Identities=29% Similarity=0.313 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhc---------------------CCCcchhhhcccchhhHH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTL---------------------NLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~l---------------------gl~~~qV~vWFqNrR~k~ 90 (140)
.++.+|.|+.|+..++.+|+..|..++||+..+++.||..| +|++.+|++||+|||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 789999999999999999
Q ss_pred HHHhHH
Q psy10638 91 RKQHLE 96 (140)
Q Consensus 91 kk~~~~ 96 (140)
+++.+.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 987644
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=1.8e-17 Score=105.59 Aligned_cols=61 Identities=30% Similarity=0.441 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 36 KRVRTIFTPEQLERLEAEF---ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F---~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
++.|+.|+..++.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5778999999999999999 899999999999999999999999999999999999987754
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1.1e-17 Score=103.91 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 35 SKRVRTIFTPEQLERLEAEF---ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F---~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
.++.|+.|+..++.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 56778999999999999999 89999999999999999999999999999999999886
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=7.6e-17 Score=105.32 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFER---QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..+.++.|+.|+..++.+|+.+|.. ++||+..++..||..+||++.+|++||+|+|+|+++..
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 4456778899999999999999988 59999999999999999999999999999999998765
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=4.6e-17 Score=106.95 Aligned_cols=62 Identities=31% Similarity=0.472 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHH
Q psy10638 36 KRVRTIFTPEQLERLEAEF---ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEF 97 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F---~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~ 97 (140)
+|.|+.|+..++.+|+.+| ..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5778999999999999999 8999999999999999999999999999999999999987544
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=2.5e-17 Score=118.14 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
..++++|.|+.|+..|+..|+..|..++||+..++..||..+||++++|++||+|||+|+||.
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345677889999999999999999999999999999999999999999999999999999975
No 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.67 E-value=1.3e-17 Score=121.68 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
..++++|.|+.|+..|+.+|+..|..++||+..++..||..+||++++|++||+|||+|+||....
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 346678889999999999999999999999999999999999999999999999999999997743
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=115.70 Aligned_cols=62 Identities=39% Similarity=0.626 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
..++++|.|+.|+..++.+|+.+|..++||+..++..||..+||++++|++||+|||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567788999999999999999999999999999999999999999999999999999986
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=9.5e-17 Score=98.51 Aligned_cols=55 Identities=29% Similarity=0.387 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 39 RTIFTPEQLERLEAEFER---QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 39 Rt~~s~~q~~~Le~~F~~---~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
|+.|+..++.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 578999999999999999 9999999999999999999999999999999999874
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=3e-17 Score=104.64 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=54.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 35 SKRVRTIFTPEQLERLEAEF-ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 35 ~rr~Rt~~s~~q~~~Le~~F-~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..+.+..++..|+.+||..| ..++||+..++..||..|||++++|++||+|||+++|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34455667888999999999 9999999999999999999999999999999999999754
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=104.95 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.|+..|+.+|+..|..++||+..++..||..+||++++|++||+|||+|+|+..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 389999999999999999999999999999999999999999999999998865
No 62
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.8e-16 Score=104.86 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.|+..|+.+|+..|..++||+..++..||..|||++++|+|||+|||++++++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999865
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=1.8e-16 Score=104.24 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 33 SKSKRVRTIFTPEQLERLEAEFER---QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 33 ~~~rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
.++++.|+.|+..++.+|+.+|.. ++||+..++..||..+||++.+|++||+|||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345566899999999999999999 99999999999999999999999999999999987
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=9.6e-17 Score=108.20 Aligned_cols=66 Identities=32% Similarity=0.387 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHh------------------cC---CCcchhhhcccchhhHH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHT------------------LN---LTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~------------------lg---l~~~qV~vWFqNrR~k~ 90 (140)
.++.+|.|+.|+..++.+|+..|..++||+..+++.||.. || |++.+|++||+|||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567788999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHhHHH
Q psy10638 91 RKQHLEF 97 (140)
Q Consensus 91 kk~~~~~ 97 (140)
+++.+..
T Consensus 86 k~k~~~~ 92 (99)
T 1lfb_A 86 AFRHKLA 92 (99)
T ss_dssp SCCC---
T ss_pred HHhchhh
Confidence 8877543
No 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=97.98 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 43 TPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 43 s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999999764
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=2.7e-16 Score=102.61 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh---cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhH
Q psy10638 37 RVRTIFTPEQLERLEAEFER---QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95 (140)
Q Consensus 37 r~Rt~~s~~q~~~Le~~F~~---~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~ 95 (140)
+.|+.|+..++.+|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 44566999999999999999 999999999999999999999999999999999998753
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=100.08 Aligned_cols=55 Identities=45% Similarity=0.762 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++..++..|+..|..++||+..++..||..|||++++|++||+|||+|+|+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4578999999999999999999999999999999999999999999999999865
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.62 E-value=2.8e-16 Score=113.60 Aligned_cols=61 Identities=30% Similarity=0.347 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 33 ~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
++++|.|+.|+..++..|+..|..++||+..++..||..+||++++|++||+|||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4677889999999999999999999999999999999999999999999999999999974
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=97.88 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
.+...|+..|+..|..++||+..++..||..|||++++|++||+|||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3568999999999999999999999999999999999999999999998775
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=2e-16 Score=98.56 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=46.2
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 44 PEQLERLEAEF-ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 44 ~~q~~~Le~~F-~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
+.++.+||..| ..++||+..++..||..|||++++|++||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34799999999 568999999999999999999999999999999999864
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.59 E-value=5.1e-16 Score=112.94 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
...+.+|.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+|+|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 345678889999999999999999999999999999999999999999999999999999987643
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.8e-15 Score=93.53 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHHH
Q psy10638 40 TIFTPEQLERLEAEFE---RQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQ 98 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~---~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~~ 98 (140)
..|+.+++.+|+..|. .++||+..++..||..+||++.+|++||+|+|+|+++......
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3689999999999999 9999999999999999999999999999999999998765543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.46 E-value=1.6e-14 Score=107.85 Aligned_cols=61 Identities=33% Similarity=0.405 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcC---------------------CCcchhhhcccchhhHH
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN---------------------LTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lg---------------------l~~~qV~vWFqNrR~k~ 90 (140)
.++.||.|+.|+..++.+|+.+|..++||+..+++.||..|| |++.+|++||+|||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 456788999999999999999999999999999999999999 99999999999999987
Q ss_pred HH
Q psy10638 91 RK 92 (140)
Q Consensus 91 kk 92 (140)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.5e-14 Score=87.52 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 44 PEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 44 ~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.+++..|+.+|..+++|+..++..||..+||+.++|++||||+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999973
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=86.45 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHh---cCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHH
Q psy10638 41 IFTPEQLERLEAEFER---QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~---~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~ 96 (140)
-|+..++.+|+.+|.. ++||+..++..||..+||++.+|.+||+|+|.|.++....
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 4889999999999987 8999999999999999999999999999999999887543
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.35 E-value=4.9e-13 Score=101.31 Aligned_cols=60 Identities=32% Similarity=0.428 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcC---------------------CCcchhhhcccchhhH
Q psy10638 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN---------------------LTEAQVKVWFQNRRIK 89 (140)
Q Consensus 31 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lg---------------------l~~~qV~vWFqNrR~k 89 (140)
..++.||.|+.|+..++.+|+.+|..++||+..+++.||..|| |++.+|++||+|||+.
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4566788999999999999999999999999999999999988 8899999999999986
Q ss_pred H
Q psy10638 90 W 90 (140)
Q Consensus 90 ~ 90 (140)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.19 E-value=5.6e-12 Score=101.40 Aligned_cols=55 Identities=29% Similarity=0.490 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 37 RVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 37 r~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
+.++.++..++..|+..|..++||+..+|..||..+||++++|++||+|||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4467899999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.60 E-value=6.2e-09 Score=57.58 Aligned_cols=21 Identities=52% Similarity=1.146 Sum_probs=18.7
Q ss_pred chhhhcccchhhHHHHHhHHH
Q psy10638 77 AQVKVWFQNRRIKWRKQHLEF 97 (140)
Q Consensus 77 ~qV~vWFqNrR~k~kk~~~~~ 97 (140)
++|+|||+|||+|+||...+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999998664
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.71 E-value=0.0089 Score=37.08 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccch
Q psy10638 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNR 86 (140)
Q Consensus 45 ~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNr 86 (140)
.....|+.+|...+.+...+...|+.+..|+..+|+-||-.|
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 345789999999999999999999999999999999999643
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=82.79 E-value=1.9 Score=24.73 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhccc
Q psy10638 39 RTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 39 Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFq 84 (140)
|..|+.+....+...+... .........+|..+||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568888877665554433 22122356889999999999999964
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=74.98 E-value=5.7 Score=26.01 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 38 VRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 38 ~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
.|..|+.++...+-..+..+..... ..+|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 4678999999887777755554432 35789999999999999877654
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=74.87 E-value=4.6 Score=25.06 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 42 FTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
++..+..+|..+|-.. .....||..||++...|+.+...-+.+.++.
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5666777776655322 2457789999999999999886655555544
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.78 E-value=4.6 Score=24.97 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhccc
Q psy10638 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFq 84 (140)
++.+..|+.+........+. ... ....+|..+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34566788888665555564 222 255789999999999999963
No 84
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=67.64 E-value=2.7 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.....|....|-. .....||...|++...|-.+|.++-.-
T Consensus 51 aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 51 ACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKRQM 90 (229)
T ss_dssp HHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHHHH
Confidence 3334477777544 346678999999999999999987443
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=67.46 E-value=4.3 Score=21.58 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccch
Q psy10638 42 FTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNR 86 (140)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNr 86 (140)
++.++...+...+... .....||..+|++...|..|+...
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4444444444445432 235678999999999999998653
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.43 E-value=8.7 Score=19.88 Aligned_cols=40 Identities=5% Similarity=0.137 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccc
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQN 85 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqN 85 (140)
.++......+...+... . ....||..+|++...|..|+..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46676665555555432 2 2567899999999999999754
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.32 E-value=4.9 Score=23.10 Aligned_cols=47 Identities=13% Similarity=-0.090 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
.+++.+..+|...|-.. .....+|..+|++...|+.+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46788888888776333 235678999999999999987655554443
No 88
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=62.76 E-value=6.6 Score=28.62 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 39 RTIFTPEQ-LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 39 Rt~~s~~q-~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
+...+.+. +..-...|....+-. .....||..+|++...|-.+|.|+-.
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 33444443 334444566666543 44667899999999999999998543
No 89
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=59.95 E-value=5.1 Score=27.83 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
+......|....|-. .....||...|++...|-.+|.++..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 334445577777643 44677899999999999999998744
No 90
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.47 E-value=20 Score=23.37 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.+++.+..++...|-... ....+|..+|++...|+.|...-+.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467888888877765442 3567899999999999999887666665543
No 91
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.87 E-value=16 Score=22.56 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHhc-CCCCHHHHhhHHHhcCCCcchhhhcccc
Q psy10638 40 TIFTPEQLERLEAEFERQ-QYMVGPERLYLAHTLNLTEAQVKVWFQN 85 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~-~~p~~~~~~~La~~lgl~~~qV~vWFqN 85 (140)
..|+.+........+... . .....+|..+||+...|..|...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 468888776655555332 2 23567899999999999999753
No 92
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.11 E-value=15 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 38 VRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 38 ~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
....++..+..+|...+ ..+ ....||..||+++..|+....+-+.|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34568999999998776 222 35678999999999999876554333
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=52.23 E-value=21 Score=22.67 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 39 RTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 39 Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
...+++.+..+|...+. .+ ....||..||+++..|+.+..+-+.|..-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45689999999977653 22 24778999999999999987654444433
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.41 E-value=16 Score=21.38 Aligned_cols=50 Identities=6% Similarity=-0.077 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
.+++.+..+|...|-.... .......||..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788889999888752110 1123467899999999999998765544444
No 95
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=50.60 E-value=20 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
.+++.+..+|. .| ........||..||++...|+.+...-+.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35555555555 22 2233567789999999999999876555554443
No 96
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.55 E-value=14 Score=26.08 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
.+++.+..+|...|-. ......||..||++...|+.+...-+.+.|+
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3566777777766632 2345678999999999999987655555544
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=50.44 E-value=24 Score=22.89 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
.+++.+..+|...|-... ....+|..+|++...|+.++..-+.+.++..
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 366777777776653332 4567899999999999999876666666543
No 98
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=49.39 E-value=11 Score=25.54 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 45 ~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.-+......|....| . .....||...|++...|-.+|.++-.-
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 334455566888888 5 688889999999999999999987443
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=49.29 E-value=21 Score=20.39 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
..+++.+..+|...+ ..+ ....+|..+|++...|..++..-+.+.+..
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 458889999887742 222 356789999999999999887555544443
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.91 E-value=10 Score=21.94 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
.+++.+..+|...|....+- ......||..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46788888888887332111 123467899999999999998765444443
No 101
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=48.29 E-value=16 Score=22.10 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..++..+..+|..++ .. .....||..+|++...|+.+..+-+.+.+...
T Consensus 20 ~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 458999999988843 22 24567899999999999998876555554443
No 102
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=48.03 E-value=9.1 Score=27.08 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 50 LEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 50 Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
....|....|- ......||...|++...|-.+|.|+..-..
T Consensus 53 A~~lf~e~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 93 (236)
T 3q0w_A 53 AENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAVLL 93 (236)
T ss_dssp HHHHHHHSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHcCcc-cCCHHHHHHHhCCcHHHHHHHCCCHHHHHH
Confidence 33447776653 344667899999999999999998754433
No 103
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.13 E-value=15 Score=22.83 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
..++..+..+|...+. .+ ....||..||++...|+.+..+-+.+.+..
T Consensus 26 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3588999999888532 22 246789999999999999887655555443
No 104
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.54 E-value=8.3 Score=26.68 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
+......|.... .......||...|++...|-.+|.++..-.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~ 67 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLF 67 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 334445577777 666788899999999999999999875443
No 105
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=44.90 E-value=24 Score=24.06 Aligned_cols=47 Identities=6% Similarity=-0.055 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 42 FTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
+++.+..+|...|-.. .....||..+|++...|+.+...-+.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555544222 2356789999999999999886555555443
No 106
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.82 E-value=16 Score=26.56 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=33.1
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchh
Q psy10638 39 RTIFTPEQ-LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 39 Rt~~s~~q-~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR 87 (140)
|...+.+. +......|....+-. .....||..+|++...+-.+|.|+-
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~ 64 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHH
Confidence 33344433 334455577777643 3466789999999999999998863
No 107
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=43.60 E-value=18 Score=22.07 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
.+++.+..+|...|-.... .......||..+|++...|+.+...-+.+-+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3678888888887742110 112356789999999999999876555555443
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.00 E-value=27 Score=20.33 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 42 FTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
+++.+..+|..+| .. .....+|..+|++...|+.++..-+.+.+...
T Consensus 17 L~~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVV--AG----LPNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHT--TT----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5667777776632 22 23457899999999999998876555555444
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=40.29 E-value=43 Score=20.87 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHhcC--CCC-HHHHhhHHHhcCCCcchhhhccc
Q psy10638 40 TIFTPEQLERLEAEFERQQ--YMV-GPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~--~p~-~~~~~~La~~lgl~~~qV~vWFq 84 (140)
..|+.++.......+.... +.+ ......+|..+||+...|..|..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4688887765544443221 222 13567799999999999999964
No 110
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=40.14 E-value=21 Score=24.28 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.-...|....+ . .....||...|++...|-.+|.|+-.-
T Consensus 21 aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 21 VAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 34455888887 5 678889999999999999999997444
No 111
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=40.10 E-value=16 Score=25.86 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
+......|....+- ......||..+|++...|-.+|.++..
T Consensus 31 l~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 31 ITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHH
T ss_pred HHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 34445557776653 334677899999999999999988643
No 112
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.07 E-value=24 Score=24.18 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 44 PEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 44 ~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
..-+..-...|....|-.. ....||...|++...|-.+|.|+..-
T Consensus 14 ~~Il~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L 58 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 3344555566888886543 36678999999999999999987443
No 113
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.01 E-value=33 Score=23.03 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHhhH-HHhc--CCCcchhhhcccch
Q psy10638 36 KRVRTIFTPEQLERLEAEF-ERQQYMVGPERLYL-AHTL--NLTEAQVKVWFQNR 86 (140)
Q Consensus 36 rr~Rt~~s~~q~~~Le~~F-~~~~~p~~~~~~~L-a~~l--gl~~~qV~vWFqNr 86 (140)
++.|..+|.++...+-.++ +.++..+..+.... ...+ ++....|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4677889999999999998 67777766555443 2256 67777888887654
No 114
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=39.85 E-value=15 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.085 Sum_probs=20.8
Q ss_pred HhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
...||..||++...|+.+...-+.+.|+
T Consensus 154 ~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 154 HRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3467888999999999988755555544
No 115
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=39.44 E-value=10 Score=27.13 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 50 LEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 50 Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
....|....|- ......||...|++...|-.+|.++..-..
T Consensus 52 A~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 92 (255)
T 3g1o_A 52 AENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAVLL 92 (255)
T ss_dssp HHHHHTTSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHcCCc-cCcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 33446666543 334667899999999999999998754433
No 116
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=39.44 E-value=17 Score=25.25 Aligned_cols=40 Identities=10% Similarity=-0.045 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 50 LEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 50 Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
-...|....|-. .....||...|++..-|-.+|.|+-.-.
T Consensus 44 A~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~L~ 83 (221)
T 3g7r_A 44 ATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDDLI 83 (221)
T ss_dssp HHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 334477777543 3466789999999999999999875443
No 117
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=38.11 E-value=10 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=19.7
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...+|..+|+....++.|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56689999999999999988655
No 118
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=37.80 E-value=36 Score=24.39 Aligned_cols=47 Identities=9% Similarity=-0.050 Sum_probs=31.7
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchh
Q psy10638 40 TIFTPEQ-LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 40 t~~s~~q-~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...+.+. +......|....+-. .....||..+|++...+-.+|.|+-
T Consensus 14 ~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 14 EPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHH
Confidence 3344433 344455577777543 4466789999999999999999853
No 119
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=37.01 E-value=18 Score=24.74 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|....|- ......||...|++...|-.+|.++-.-
T Consensus 36 l~aA~~l~~~~G~~-~~t~~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 36 IRAGLEHLTEKGYS-SVGVDEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHSCTT-TCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCC-cCcHHHHHHHhCCCcchhhhhCCCHHHH
Confidence 33444557777654 3446778999999999999999987543
No 120
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=35.57 E-value=19 Score=24.50 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 48 ERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 48 ~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
......|....|-. .....||...|++...+-.+|.++-.-
T Consensus 38 ~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 38 KVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34445577777543 446778999999999999999987543
No 121
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.23 E-value=21 Score=21.81 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..+++.+..+|..++. .+ ....||..||++...|+.+..+-+.+.+...
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 4578888888877432 22 3456899999999999998876555554443
No 122
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=34.89 E-value=0.34 Score=34.18 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHH
Q psy10638 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGP 63 (140)
Q Consensus 33 ~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~ 63 (140)
...+|.|+.|+..|+..|+..|+.+++|...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4567889999999999999999999988643
No 123
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=34.44 E-value=21 Score=21.52 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.5
Q ss_pred HhhHHHhcCCCcchhhhcccchhhH
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
...||..||++..-|..|+.++..-
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 6789999999999999998654433
No 124
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=34.36 E-value=8.7 Score=27.46 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
.....|....|-. .....||...|++...|-.+|.|+-.-..
T Consensus 54 aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 54 SARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 3444577766543 34667899999999999999998754443
No 125
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=33.61 E-value=39 Score=22.50 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.....|....|-.. ....||...|++...|-.+|.++-.-
T Consensus 25 aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~L 64 (206)
T 3kz9_A 25 IALEVFARRGIGRG-GHADIAEIAQVSVATVFNYFPTREDL 64 (206)
T ss_dssp HHHHHHHHSCCSSC-CHHHHHHHHTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHhcCcccc-cHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33444777775543 46678999999999999999986443
No 126
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=32.74 E-value=35 Score=22.97 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|....|-. .....||...|++...|-.+|.++-.-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 64 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKNAI 64 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTTTG
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHHHH
Confidence 344445577777643 346778999999999999999997543
No 127
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.50 E-value=16 Score=19.96 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhccc
Q psy10638 44 PEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 44 ~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFq 84 (140)
......+...|.. .. ....||..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 4444444444432 22 355789999999999999874
No 128
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=32.06 E-value=24 Score=24.53 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
+..-...|....|-.. ....||...|++...|-.+|.++-.
T Consensus 20 l~AA~~lf~~~G~~~~-s~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 20 VEAAERVIARQGLGGL-SHRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHHCTTCC-CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchhHHHHcCCHHH
Confidence 3344445888776443 3567799999999999999998643
No 129
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=31.64 E-value=21 Score=24.16 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
+......|....| . .....||...|++...|-.+|.|+-.-.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 63 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLL 63 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHH
Confidence 3344455888888 5 5788899999999999999999874443
No 130
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=31.32 E-value=41 Score=23.37 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 46 QLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 46 q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
-+......|....|-.. ....||...|++...|-.+|.++-.-
T Consensus 35 Il~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~L 77 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEEL 77 (230)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 34555666777776543 46678999999999999999987443
No 131
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.06 E-value=17 Score=20.15 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=22.3
Q ss_pred HhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
...+|..+|+++..|+.+..+-+.+.+...
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 357899999999999998775555544433
No 132
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=30.79 E-value=33 Score=22.76 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 51 EAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 51 e~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
...|... .......||...|++...|-.+|.++-.-.
T Consensus 24 ~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (190)
T 2v57_A 24 MLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLL 60 (190)
T ss_dssp HHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3446555 566778899999999999999999864443
No 133
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=30.70 E-value=30 Score=23.04 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 46 QLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 46 q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
-+......|....|- .....||...|++...|-.+|.|+..-.
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~ 56 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELL 56 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 344555568888876 6678889999999999999999865443
No 134
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=30.26 E-value=42 Score=22.30 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHHH
Q psy10638 48 ERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQ 98 (140)
Q Consensus 48 ~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~~ 98 (140)
.+++-.|..|+||...-... =-.|||.+||.++....
T Consensus 16 RiIkiLyQSNPyP~peGTRq--------------aRRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT--------------THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh--------------hhHhHHHHHHHHHHHHH
Confidence 34555689999987642211 11488999988876654
No 135
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.25 E-value=27 Score=20.90 Aligned_cols=45 Identities=24% Similarity=0.210 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHhhHHHhcCCCcchhhhccc
Q psy10638 40 TIFTPEQLERLEAEFER-----QQYMVGPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~-----~~~p~~~~~~~La~~lgl~~~qV~vWFq 84 (140)
..++......|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 45788888899998864 3467778888888888887777776664
No 136
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.06 E-value=48 Score=19.98 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHhhHHHhcCCCcchhhhccc
Q psy10638 41 IFTPEQLERLEAEFER-----QQYMVGPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~-----~~~p~~~~~~~La~~lgl~~~qV~vWFq 84 (140)
.++..+...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888889998864 3357777777777778888776665553
No 137
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.63 E-value=1.2e+02 Score=19.99 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHhhHHHhcCCCc
Q psy10638 39 RTIFTPEQLERLEAEFER-----QQYMVGPERLYLAHTLNLTE 76 (140)
Q Consensus 39 Rt~~s~~q~~~Le~~F~~-----~~~p~~~~~~~La~~lgl~~ 76 (140)
+..+|..++..|..+|.. +.+.+..+...+...||+..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 356999999999999964 45788888888888888654
No 138
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.34 E-value=79 Score=20.13 Aligned_cols=41 Identities=5% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccc
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQN 85 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqN 85 (140)
..++.++...+...+... . ....+|..||++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 357787777766666432 2 3567799999999999999864
No 139
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=28.03 E-value=70 Score=19.47 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHhHHHH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQ 98 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~~~~~ 98 (140)
+.+++-.|..|+||+..-... | -.|||-+|+.++....
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHHH
Confidence 345556689999987652211 1 1478888888775543
No 140
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=27.91 E-value=24 Score=20.10 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=17.3
Q ss_pred HhhHHHhcCCCcchhhhcc
Q psy10638 65 RLYLAHTLNLTEAQVKVWF 83 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWF 83 (140)
...||..||++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4678999999999999998
No 141
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=27.74 E-value=22 Score=19.59 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=19.5
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999997754
No 142
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=27.30 E-value=91 Score=19.67 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~ 93 (140)
.+++.+..++...|-.... .......||..+|++...|+.....-+.+-|..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3677777888777753211 123456789999999999998875544444443
No 143
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=26.63 E-value=64 Score=21.67 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|....|-.. ....||...|++...+-.+|.++-.=
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sKe~L 61 (203)
T 3ccy_A 20 IERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSKEAV 61 (203)
T ss_dssp HHHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCHHHH
Confidence 3444556888776544 46678999999999999999987443
No 144
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=26.47 E-value=21 Score=25.00 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.-...|....|- ......||...|++...|-.+|.++..-
T Consensus 43 AA~~lf~~~G~~-~~s~~~IA~~AGvs~~tlY~~F~sKe~L 82 (237)
T 3kkd_A 43 AAMRLIVRDGVR-AVRHRAVAAEAQVPLSATTYYFKDIDDL 82 (237)
T ss_dssp HHHHHHHHHCGG-GCCHHHHHHHHTSCTTTC-----CHHHH
T ss_pred HHHHHHHhcChh-hcCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 334447777763 3346678999999999999999987544
No 145
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=25.96 E-value=25 Score=19.46 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=19.9
Q ss_pred HhhHHHhcCCCcchhhhcccchhh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 466899999999999999877543
No 146
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.80 E-value=98 Score=17.58 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCC-Cc-chhhhcccchh
Q psy10638 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNL-TE-AQVKVWFQNRR 87 (140)
Q Consensus 32 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl-~~-~qV~vWFqNrR 87 (140)
+.+.+.....++++....++..|...+. .-..||..++- +. ..|..|+.+++
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 3445556678999999999999988652 33455666542 22 35677776554
No 147
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=25.76 E-value=27 Score=23.38 Aligned_cols=40 Identities=5% Similarity=0.110 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.....|....+-. .....||...|++...|-.+|.++-.-
T Consensus 22 aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 22 AAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDEL 61 (203)
T ss_dssp HHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHH
Confidence 3444477777543 346678999999999999999986443
No 148
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=25.66 E-value=34 Score=23.54 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHHHHHHH---HHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 46 QLERLEAE---FERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 46 q~~~Le~~---F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
...+|+.. |....|-. .....||...|++...|-.+|.|+..=
T Consensus 26 r~~Il~aA~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe~L 71 (214)
T 2oer_A 26 VASILEAAVQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKAAI 71 (214)
T ss_dssp HHHHHHHHHHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHHHH
Confidence 34455544 66666543 346678999999999999999987443
No 149
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=25.57 E-value=16 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|....|- ......||...|++...|-.+|.++-.-
T Consensus 36 l~aA~~lf~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~sK~~L 77 (226)
T 2pz9_A 36 VAAAKEEFARHGIA-GARVDRIAKQARTSKERVYAYFRSKEAL 77 (226)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCcc-cCcHHHHHHHHCCChHHHHHHcCCHHHH
Confidence 34444556666543 2346678999999999999999886443
No 150
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.36 E-value=22 Score=20.84 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.8
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46789999999999999997765
No 151
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.77 E-value=39 Score=22.38 Aligned_cols=42 Identities=5% Similarity=-0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|....|-.. ....||...|++...+-.+|.++-.=
T Consensus 16 l~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L 57 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSKEQF 57 (197)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCHHHH
Confidence 4444555777775443 36678999999999999999987553
No 152
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.48 E-value=89 Score=22.72 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHHHh
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk~~ 94 (140)
..+++.++.+|...+ ..+ ...++|..||+++..|+....+-+.+.+...
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 468999999988864 232 3567899999999999998876666555543
No 153
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=24.38 E-value=28 Score=23.88 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 48 ERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 48 ~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
......|....|- .....||...|++...|-.+|.|+..-.
T Consensus 19 ~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~ 59 (224)
T 1t33_A 19 AAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLY 59 (224)
T ss_dssp HHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 3344457777766 5678889999999999999999875443
No 154
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.33 E-value=27 Score=19.55 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.2
Q ss_pred HhhHHHhcCCCcchhhhcccchhh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
...||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 466899999999999999987654
No 155
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.07 E-value=27 Score=19.86 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=19.6
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987754
No 156
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=24.01 E-value=1.1e+02 Score=18.75 Aligned_cols=44 Identities=18% Similarity=0.043 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCC-------Ccchhhhccc
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNL-------TEAQVKVWFQ 84 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl-------~~~qV~vWFq 84 (140)
.++++....+...+..++..+..+........|+ +...|..|+.
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 4666677777777766666665554433222274 6677888875
No 157
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=23.87 E-value=27 Score=23.60 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.....|....|- ......||...|++...|-.+|.++..-
T Consensus 26 aa~~l~~~~G~~-~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 26 AALDTFSQFGFH-GTRLEQIAELAGVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHCTT-TCCHHHHHHHTTSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHcCcc-hhhHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 334447777654 3446778999999999999999986443
No 158
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=23.80 E-value=33 Score=24.22 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 48 ERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 48 ~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
......|....|-. .....||...|++...|-.+|.|+-.-..
T Consensus 30 ~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~~ 72 (231)
T 2zcx_A 30 DAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQIFL 72 (231)
T ss_dssp HHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHH
Confidence 33444587777654 34667899999999999999998754433
No 159
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.34 E-value=59 Score=22.02 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.....|....|-.. ....||...|++...|-.+|.|+-.=
T Consensus 19 aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2xdn_A 19 AAERAFYKRGVART-TLADIAELAGVTRGAIYWHFNNKAEL 58 (210)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCTTHHHHHCSSHHHH
T ss_pred HHHHHHHHcCcccC-cHHHHHHHHCCChHHHHHHhCCHHHH
Confidence 33455888776544 36677999999999999999987433
No 160
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=23.05 E-value=36 Score=22.51 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
+......|....|- ......||...|++...|-.+|.|+..=.
T Consensus 18 l~aA~~lf~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 60 (199)
T 3on2_A 18 LARAESTLEKDGVD-GLSLRQLAREAGVSHAAPSKHFRDRQALL 60 (199)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHTC-----CCCSSSSHHHHH
T ss_pred HHHHHHHHHhcChh-hhhHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 34444557776644 33466789999999999999999875443
No 161
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=22.96 E-value=57 Score=21.54 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
.....|....+-.. ....||...|++...|-.+|.|+-.=.
T Consensus 15 aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 55 (199)
T 3qbm_A 15 QAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESKEQLA 55 (199)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCHHHHH
Confidence 34455777765433 466789999999999999999875443
No 162
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=22.91 E-value=60 Score=21.56 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 45 ~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.-+......|....|-. .....||...|++...|-.+|.++..-
T Consensus 11 ~Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 54 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKEEI 54 (192)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 33445556688877644 346678999999999999999987443
No 163
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.60 E-value=59 Score=19.70 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHhhHHHhcCCCcchhhhccc
Q psy10638 41 IFTPEQLERLEAEFER-----QQYMVGPERLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~-----~~~p~~~~~~~La~~lgl~~~qV~vWFq 84 (140)
.++..+...|...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566778888888854 3367777777777778888777666553
No 164
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.56 E-value=83 Score=20.55 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
.....|....|-. .....||...|++...|-.+|.|+-.-.
T Consensus 15 aA~~l~~~~G~~~-~s~~~IA~~agvs~~tly~~F~sK~~L~ 55 (180)
T 2fd5_A 15 AATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKDALM 55 (180)
T ss_dssp HHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHHHHH
T ss_pred HHHHHHHHhCccc-CCHHHHHHHhCCCccHHHHHCCCHHHHH
Confidence 3444577777644 3467789999999999999999865443
No 165
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.44 E-value=33 Score=19.53 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.4
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999997753
No 166
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.23 E-value=66 Score=21.04 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 46 QLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 46 q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
-+......|....+-. .....||...|++...+-.+|.++..-
T Consensus 14 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 56 (195)
T 3ppb_A 14 ILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQL 56 (195)
T ss_dssp HHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 3444555577776544 446778999999999999999987543
No 167
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.09 E-value=1.3e+02 Score=19.84 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHh-------cCCCcchhhhcccc
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHT-------LNLTEAQVKVWFQN 85 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~-------lgl~~~qV~vWFqN 85 (140)
..++.+....+...+..++..+..+....... ..++...|..|+..
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 45677777777777777776666554432222 13667788888754
No 168
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.78 E-value=33 Score=19.44 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=19.8
Q ss_pred HhhHHHhcCCCcchhhhcccchhh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 456899999999999999877543
No 169
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.60 E-value=42 Score=23.39 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
.....|....+-. .....||...|++...|-.+|.|+-.-.
T Consensus 24 aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~L~ 64 (216)
T 2oi8_A 24 HAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRDELI 64 (216)
T ss_dssp HHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344577777543 3466789999999999999999875443
No 170
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.41 E-value=32 Score=23.01 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 41 IFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
.+++.+..+|...| .......+||..||+++..|+.+...-|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36666766665432 333456788999999999999987654444443
No 171
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.17 E-value=66 Score=21.51 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|.+..|- ......||...|++...+-.+|.++..=
T Consensus 19 l~aa~~lf~~~G~~-~~tv~~Ia~~agvs~~t~Y~~F~sK~~L 60 (195)
T 2iu5_A 19 AKAFKDLMQSNAYH-QISVSDIMQTAKIRRQTFYNYFQNQEEL 60 (195)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCGGGGGGTCSSHHHH
T ss_pred HHHHHHHHHhCCCC-eeCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44445557777654 3346778999999999999999986444
No 172
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.11 E-value=90 Score=22.26 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHHH
Q psy10638 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92 (140)
Q Consensus 40 t~~s~~q~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~kk 92 (140)
..+++.++.+|.-.+ .. ..-.+||..||+++..|+....+-+.|..-
T Consensus 174 ~~Lt~~e~~vl~~~~--~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 174 QMLSPREMLCLVWAS--KG----KTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GSCCHHHHHHHHHHH--TT----CCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 458888888886643 22 134678999999999999987765555443
No 173
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=21.05 E-value=64 Score=21.57 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
.....|....|-.. ....||...|++...|-.+|.|+-.
T Consensus 20 aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~ 58 (192)
T 2fq4_A 20 ASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAA 58 (192)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHH
Confidence 33444777776543 4667899999999999999988643
No 174
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=21.04 E-value=43 Score=19.27 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.7
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...+|..||++...|..|..+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 45678999999999999987654
No 175
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.99 E-value=35 Score=18.91 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.0
Q ss_pred HhhHHHhcCCCcchhhhcccchhh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
...||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 456899999999999999877654
No 176
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=20.93 E-value=68 Score=21.07 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
+......|....|-.. ....||...|++...+-..|.|+-.-.
T Consensus 8 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 50 (194)
T 3bqz_B 8 LGVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTKENLF 50 (194)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCHHHHH
Confidence 3444556777665443 466789999999999999999874443
No 177
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=20.85 E-value=37 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.5
Q ss_pred HhhHHHhcCCCcchhhhccc
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQ 84 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFq 84 (140)
...+|..+|++...++.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45678899999999999965
No 178
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=20.85 E-value=65 Score=21.79 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
.-...|....|-... ...||...|++...|-.+|.|+..
T Consensus 18 aA~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~ 56 (210)
T 3vib_A 18 AALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKED 56 (210)
T ss_dssp HHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHH
Confidence 334458888865443 667899999999999999998744
No 179
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.79 E-value=35 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.4
Q ss_pred HhhHHHhcCCCcchhhhcccchh
Q psy10638 65 RLYLAHTLNLTEAQVKVWFQNRR 87 (140)
Q Consensus 65 ~~~La~~lgl~~~qV~vWFqNrR 87 (140)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45689999999999999987754
No 180
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.74 E-value=67 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
+......|....|-. .....||...|++...+-.+|.|+-.=
T Consensus 22 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 63 (211)
T 3him_A 22 RAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKESL 63 (211)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHHHH
T ss_pred HHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHHHH
Confidence 344445577777653 346678999999999999999987543
No 181
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=20.71 E-value=22 Score=16.07 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=9.6
Q ss_pred cchhhhcccchhh
Q psy10638 76 EAQVKVWFQNRRI 88 (140)
Q Consensus 76 ~~qV~vWFqNrR~ 88 (140)
...|-+-++|||.
T Consensus 3 kkpvpiiycnrrt 15 (21)
T 8tfv_A 3 KKPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCCEEEEGGG
T ss_pred CCcccEEEEcCcc
Confidence 3567788899885
No 182
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=20.58 E-value=73 Score=21.48 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhh
Q psy10638 50 LEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88 (140)
Q Consensus 50 Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~ 88 (140)
-...|....|-.. ....||...|++...|-.+|.|+-.
T Consensus 18 A~~lf~~~G~~~~-s~~~IA~~aGvsk~tlY~~F~sKe~ 55 (203)
T 3cdl_A 18 AIAEFGDRGFEIT-SMDRIAARAEVSKRTVYNHFPSKEE 55 (203)
T ss_dssp HHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHTTSSSHHH
T ss_pred HHHHHHHcCchhc-CHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 3444777776543 3667899999999999999998744
No 183
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=20.46 E-value=68 Score=21.66 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 48 ERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 48 ~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
..-...|....|-... ...||...|++...|-.+|.|+-.=
T Consensus 21 ~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sKe~L 61 (199)
T 3crj_A 21 QATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTKDDL 61 (199)
T ss_dssp HHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCHHHH
Confidence 3334558887765444 5667999999999999999986443
No 184
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=20.46 E-value=68 Score=21.25 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHHH
Q psy10638 48 ERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91 (140)
Q Consensus 48 ~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~k 91 (140)
......|....|-. .....||...|++...+-.+|.|+-.-..
T Consensus 18 ~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (203)
T 3b81_A 18 NKIWDIFIANGYEN-TTLAFIINKLGISKGALYHYFSSKEECAD 60 (203)
T ss_dssp HHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHcCccc-CcHHHHHHHhCCCchhHHHHcCCHHHHHH
Confidence 34444577777554 34667899999999999999998754433
No 185
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.39 E-value=73 Score=21.45 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhH
Q psy10638 49 RLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89 (140)
Q Consensus 49 ~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k 89 (140)
.....|....|-.. ....||...|++...|-.+|.|+..-
T Consensus 25 aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 25 AARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33444777776544 46678999999999999999987544
No 186
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=20.08 E-value=77 Score=21.09 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHhcCCCcchhhhcccchhhHH
Q psy10638 47 LERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKW 90 (140)
Q Consensus 47 ~~~Le~~F~~~~~p~~~~~~~La~~lgl~~~qV~vWFqNrR~k~ 90 (140)
+......|....|- ......||...|++...|-.+|.++-.-.
T Consensus 10 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 52 (185)
T 2yve_A 10 LRTAIDYIGEYSLE-TLSYDSLAEATGLSKSGLIYHFPSRHALL 52 (185)
T ss_dssp HHHHHHHHHHSCST-TCCHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcChh-hccHHHHHHHhCCChHHHHHhCcCHHHHH
Confidence 34444557777754 34467789999999999999999864443
Done!