RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10638
(140 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 85.2 bits (212), Expect = 3e-23
Identities = 36/57 (63%), Positives = 41/57 (71%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+R RT FTPEQLE LE EFE+ +Y ER LA L LTE QVKVWFQNRR KW++
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 74.6 bits (184), Expect = 5e-19
Identities = 34/57 (59%), Positives = 39/57 (68%)
Query: 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91
+R RT FTPEQLE LE EF++ Y ER LA L L+E QVKVWFQNRR KW+
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 73.0 bits (180), Expect = 2e-18
Identities = 34/59 (57%), Positives = 39/59 (66%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94
+R RT FTPEQLE LE EFE+ Y ER LA L LTE QVK+WFQNRR K ++
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 50.5 bits (121), Expect = 1e-08
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 21 KKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVK 80
KL SS KSKR RT T EQL LE EFE Y R+ L+ LN+ V+
Sbjct: 39 MKLERKQDGSSPPKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQ 96
Query: 81 VWFQNRRIKWRKQ 93
+WFQN+R K +K+
Sbjct: 97 IWFQNKRAKEKKK 109
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 33.6 bits (78), Expect = 0.024
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQ-NRRIKWRKQHLEFQQQRLA 103
++L++L + Q PERL L Q ++ RR++ KQ LE QRL
Sbjct: 289 QRLDQLARRLKFQS----PERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQ 344
Query: 104 AIK-QSQLNQQQENLHQQSSDQHHTSQHQYLFQQ 136
Q ++ + Q+ L Q + Q ++
Sbjct: 345 QQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKR 378
Score = 27.5 bits (62), Expect = 3.0
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQRLAA 104
+Q +RL+ +R Q + L +++ RRI+ +Q LE +QRL
Sbjct: 309 QQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRR 368
Query: 105 IKQSQLNQQQENLHQQSS 122
+ QL ++++ L +
Sbjct: 369 AMRRQLKRKRQRLEALAQ 386
Score = 26.3 bits (59), Expect = 6.3
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 85 NRRIKWRKQHLEFQQQRLAAIK-QSQLNQQQENLHQ-----QSSDQHHTSQHQYLFQQ 136
RR++ ++Q L+ +RL + L QQQ+ L + Q + + + ++
Sbjct: 281 RRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLER 338
>gnl|CDD|215361 PLN02673, PLN02673, quinolinate synthetase A.
Length = 724
Score = 30.0 bits (67), Expect = 0.39
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 11 LLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFE 55
+ SP D SP SCS+ + + T P +L+RL EF+
Sbjct: 50 IQSPPPDSAPSNASPFSCSAVAFSPSQT-TELVPCKLQRLIKEFK 93
>gnl|CDD|236979 PRK11779, sbcB, exonuclease I; Provisional.
Length = 476
Score = 29.8 bits (68), Expect = 0.41
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 24/97 (24%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERL--YLA----HTLNLTEAQVKVWFQNRRIK 89
+ +R PE L L+ F+ + E L Y A TL+ E Q +
Sbjct: 379 EIIRET-EPENLAALDLTFDDPRL---EELLFRYRARNFPETLDDEEQQ----------R 424
Query: 90 WRKQHLEFQQQRLAAIKQSQLNQQQENLHQQSSDQHH 126
W E ++QRL + Q + E L Q+ D
Sbjct: 425 WL----EHRRQRLTPERLQQYAAELEQLAQEYEDDEE 457
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 29.6 bits (67), Expect = 0.61
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 39 RTIFTPEQLERLEAEFERQQYMVGPERLY--LAHTLNLTEAQ------VKVWFQNRRIKW 90
+ + P ++RLEA+ + Q PE LY L L L + VK WF +R W
Sbjct: 535 QAVLLPRLMQRLEAQLQAQ--EQDPEELYETLKVYLMLGDPSRRDADFVKAWFASR---W 589
Query: 91 RKQHLEFQQQRLAAIKQSQLNQQQENL 117
+Q+ Q+ L + L L
Sbjct: 590 EQQYPGEYQREL----REALLGHLRAL 612
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 28.3 bits (64), Expect = 0.80
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 93 QHLEFQQQRLAAIKQSQLNQQQENLHQQ 120
Q LEFQ Q+ + Q QQ E + QQ
Sbjct: 37 QQLEFQGQKAIKEIRKQSAQQIEQIQQQ 64
>gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 328
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 44 PEQLERLEAEFERQQYMVG---PERLYLAHTLNLTEA 77
PE L AE E ++Y+ G P LY + EA
Sbjct: 37 PEFAAALAAERENREYLPGVALPAELYPTA--DPEEA 71
>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor;
Provisional.
Length = 526
Score = 28.2 bits (62), Expect = 1.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 15 SSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNL 74
S D K + SP SC +++ K+ + +TPE R E+ +G E+ + + L L
Sbjct: 213 SVDRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQ----LGVEKAFPSRILEL 268
Query: 75 TEAQ 78
Q
Sbjct: 269 MGVQ 272
>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid
dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids
to their corresponding keto acids. The general
mechanism is (R)-lactate + acceptor to pyruvate +
reduced acceptor. Formate/glycerate and related
dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as
formate dehydrogenase, glycerate dehydrogenase,
L-alanine dehydrogenase, and S-adenosylhomocysteine
hydrolase. Despite often low sequence identity, these
proteins typically have a characteristic arrangement of
2 similar subdomains of the alpha/beta Rossmann fold
NAD+ binding form. The NAD+ binding domain is inserted
within the linear sequence of the mostly N-terminal
catalytic domain, which has a similar domain structure
to the internal NAD binding domain. Structurally, these
domains are connected by extended alpha helices and
create a cleft in which NAD is bound, primarily to the
C-terminal portion of the 2nd (internal) domain. Some
related proteins have similar structural subdomain but
with a tandem arrangement of the catalytic and
NAD-binding subdomains in the linear sequence. While
many members of this family are dimeric, alanine DH is
hexameric and phosphoglycerate DH is tetrameric.
Length = 330
Score = 27.9 bits (63), Expect = 1.9
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 37 RVRTIFTPEQLERLEAEFE 55
R F P L RL A E
Sbjct: 10 RRDLFFGPAALARLAALAE 28
>gnl|CDD|225832 COG3295, COG3295, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 213
Score = 27.1 bits (60), Expect = 3.1
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 43 TPEQLERLEAEFERQ-----QYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
PE+ + + + P+ Y++ T T+A +
Sbjct: 86 LPERGGKSLKSAAGHDASPRRPLWSPDEWYVSFTAPGTDAWASYDRGTGVAEVEHT 141
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 27.0 bits (59), Expect = 3.4
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 12 LSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGP 63
L SS + C L P+S SSSSS S R++ T L R E F ++ P
Sbjct: 26 LRTSSTVAC--LPPASSSSSSSSSSSSRSVPT---LIRNEPVFAAPAPIIAP 72
>gnl|CDD|226727 COG4277, COG4277, Predicted DNA-binding protein with the
Helix-hairpin-helix motif [General function prediction
only].
Length = 404
Score = 27.1 bits (60), Expect = 3.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVG 62
SS+ + R R FTPE++ L F R+ Y+ G
Sbjct: 75 SSNDTPRAR--FTPEEIVDLTLNFYRRNYIEG 104
>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family
protein. A newly defined histidine kinase (TIGR03785)
and response regulator (TIGR03787) gene pair occurs
exclusively in Proteobacteria, mostly of marine origin,
nearly all of which contain a subfamily 6 sortase
(TIGR03784) and its single dedicated target protein
(TIGR03788) adjacent to to the sortase. This protein
family shows up in only in those species with the
histidine kinase/response regulator gene pair, and often
adjacent to that pair. It belongs to the OmpA protein
family (pfam00691). Its function is unknown. We assign
the gene symbol pdsO, for Proteobacterial Dedicated
Sortase system OmpA family protein.
Length = 239
Score = 26.7 bits (59), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 93 QHLEFQQQRLAAIKQSQLNQQQENLHQQSSDQHHTSQHQYLFQQGE 138
QH+ Q+Q++ A+ Q Q +Q Q + H + Q Q E
Sbjct: 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLE 129
>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase;
Provisional.
Length = 396
Score = 26.6 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 42 FTPEQLERLEAEFERQQYMVGPERLYLA 69
TPEQ++RL EF Y VG R+ +A
Sbjct: 353 LTPEQVDRLREEFG--VYAVGSGRINVA 378
>gnl|CDD|225829 COG3292, COG3292, Predicted periplasmic ligand-binding sensor
domain [Signal transduction mechanisms].
Length = 671
Score = 26.8 bits (59), Expect = 4.5
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 74 LTEAQVKVWFQNRRIKWRKQHLEFQQQRLAA---IKQSQLNQQQENLHQQSSDQHHT 127
L +AQ +VW RR WR E Q + + + + L ++D +
Sbjct: 553 LHDAQGRVWLSTRRGLWRIDTDELQVRNFGLRDGLGTQEFAEADGVLVGGTTDGYLM 609
>gnl|CDD|218293 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a component of the
yeast SWI/SNF complex, which is an ATP-dependent
nucleosome-remodelling complex that regulates the
transcription of a subset of yeast genes. SNF5 is a key
component of all SWI/SNF-class complexes characterized
so far. This family consists of the conserved region of
SNF5, including a direct repeat motif. SNF5 is essential
for the assembly promoter targeting and chromatin
remodelling activity of the SWI-SNF complex. SNF5 is
also known as SMARCB1, for SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin, subfamily b, member 1, and also INI1 for
integrase interactor 1. Loss-of function mutations in
SNF5 are thought to contribute to oncogenesis in
malignant rhabdoid tumours (MRTs).
Length = 228
Score = 26.5 bits (59), Expect = 5.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 43 TPEQLERLEAEFERQQ 58
T ++ER E + ER
Sbjct: 212 TDAEIERRERDRERNT 227
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 26.6 bits (59), Expect = 5.4
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 23 LSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGP------ERLYLAHTLNLTE 76
LS S+S + R TP + R +AE R ++GP R +A + +
Sbjct: 195 LSRRGSRSASRRGSRADLSMTPLEARRADAEDSRDTVLLGPDFVDEDIRAEMASIDDESF 254
Query: 77 AQ 78
+
Sbjct: 255 SS 256
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 26.5 bits (59), Expect = 5.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 84 QNRRIKWRKQHLEFQ-QQRLAAIKQSQLNQQQENL---HQQSSDQHHTSQHQ 131
+N R++ R+Q ++ Q QQ + + Q +L ++ E L QQ Q +
Sbjct: 88 ENERLQKREQSIDQQIQQAVQSETQ-ELTKEIEQLKSERQQLQGLIDQLQRR 138
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 26.7 bits (59), Expect = 5.9
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 3 KLINEKDKLLSPSSDLKCKKLSP--------SSCSSSSSKSKRVRTIFTPEQLERLEAEF 54
+L+ E+D L + +L+C + + S + + + E+L RL+ E
Sbjct: 409 RLLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELLPSEYREKLIRLQHE- 467
Query: 55 ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQRLAAIKQSQLNQQQ 114
+ L L + E ++ R LE Q RLA + +L QQ
Sbjct: 468 --------NKMLRLGQEGSENERITELQQLLEDANRRNNELE-TQLRLANQRILELQQQV 518
Query: 115 ENLHQQSSDQHHTSQ 129
E+L + +Q S+
Sbjct: 519 EDLQKALQEQGSKSE 533
>gnl|CDD|222728 pfam14390, DUF4420, Domain of unknown function (DUF4420). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 310 and
334 amino acids in length.
Length = 305
Score = 26.1 bits (58), Expect = 6.5
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 12/42 (28%)
Query: 29 SSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAH 70
S+S+ RV TI + EQL+ LYL H
Sbjct: 186 STSAKNGNRV-TISSLEQLDP-----------NDLRPLYLVH 215
>gnl|CDD|199868 cd06246, M14_CPB2, Peptidase M14 carboxypeptidase subfamily
A/B-like; Carboxypeptidase B2 subgroup. Peptidase M14
Carboxypeptidase (CP) B2 (CPB2, also known as plasma
carboxypeptidase B, carboxypeptidase U, and CPU),
belongs to the carboxpeptidase A/B subfamily of the M14
family of metallocarboxypeptidases (MCPs). The M14
family are zinc-binding CPs which hydrolyze single,
C-terminal amino acids from polypeptide chains, and have
a recognition site for the free C-terminal carboxyl
group, which is a key determinant of specificity. CPB2
enzyme displays B-like activity; it only cleaves the
basic residues lysine or arginine. It is produced and
secreted by the liver as the inactive precursor,
procarboxypeptidase U or PCPB2, commonly referred to as
thrombin-activatable fibrinolysis inhibitor (TAFI). It
circulates in plasma as a zymogen bound to plasminogen,
and the active enzyme, TAFIa, inhibits fibrinolysis. It
is highly regulated, increased TAFI concentrations are
thought to increase the risk of thrombosis and coronary
artery disease by reducing fibrinolytic activity while
low TAFI levels have been correlated with chronic liver
disease.
Length = 302
Score = 26.3 bits (58), Expect = 6.8
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 23 LSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGP--ERLYLA 69
+ P S + S SK ++ E + +E + +Y G E LYLA
Sbjct: 199 VFPYSYTRSKSKDHEELSLVAKEAVRAIEKTSKNNRYTHGSGSETLYLA 247
>gnl|CDD|224845 COG1934, COG1934, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 173
Score = 25.8 bits (57), Expect = 7.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 30 SSSSKSKRVRTIFTPEQL 47
+ SSK RVRT+ PE
Sbjct: 148 AESSKGGRVRTVLDPEDS 165
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 24.0 bits (53), Expect = 8.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQNRR 87
E+ LA L+ Q+ WF N R
Sbjct: 15 EKSELARQTGLSRKQIDNWFINAR 38
>gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional.
Length = 295
Score = 25.7 bits (57), Expect = 9.0
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 47 LERLEAEFERQQYMVGPERLYLAH--TLNLTEAQVKVWFQNRRI 88
L LE + + + + P L L H + L+ + + W +RI
Sbjct: 210 LPELENQLQAGTFPLLPPDLALQHLPRVQLSAEEAQRWCCGQRI 253
>gnl|CDD|132423 TIGR03380, agmatine_aguA, agmatine deiminase. Members of this
family are agmatine deiminase (3.5.3.12), as
characterized in Pseudomonas aeruginosa and plants.
Related deiminases include the peptidyl-arginine
deiminase (3.5.3.15) as found in Porphyromonas
gingivalis [Central intermediary metabolism, Polyamine
biosynthesis].
Length = 357
Score = 25.7 bits (57), Expect = 9.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 43 TPEQLE-RLEAEFERQQ--YMVGPER 65
TP+Q R+ AEFE Q +M+ PER
Sbjct: 2 TPKQDGFRMPAEFEPQAQCWMIWPER 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.125 0.353
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,746,314
Number of extensions: 575323
Number of successful extensions: 1179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 119
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)