RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10638
(140 letters)
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 91.4 bits (227), Expect = 1e-25
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
S + + K +R RT+FT QL LE FE+Q+Y+ P+R+ LA +L L++ QVK W+
Sbjct: 6 SGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWY 65
Query: 84 QNRRIKWRKQH 94
QNRR+KW+K
Sbjct: 66 QNRRMKWKKSG 76
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 85.9 bits (213), Expect = 2e-23
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S ++ RTI++ QL L+ F++ QY+ PER LA +L LT+ QVK+WFQN+R K
Sbjct: 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61
Query: 90 WRKQH 94
+K
Sbjct: 62 IKKSG 66
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 85.6 bits (212), Expect = 3e-23
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S K + F+ +Q LE +FE Q+Y+ PER LA L L+E QVK WFQNRR K
Sbjct: 2 SSGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61
Query: 90 WRKQHLE 96
WR+
Sbjct: 62 WRRSGPS 68
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 84.7 bits (210), Expect = 4e-23
Identities = 29/54 (53%), Positives = 36/54 (66%)
Query: 40 TIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
T F+ Q+ LE F RQ+Y+ ER LA L +T+AQVK WFQNRR KWR+Q
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 84.7 bits (210), Expect = 5e-23
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ + Q+ LE +F Q+Y+ PER +LA L LTE QVK+WFQNRR K ++
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 93 QHLE 96
+ L
Sbjct: 62 KQLS 65
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 84.1 bits (208), Expect = 2e-22
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 21 KKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVK 80
+++ + + K K+ RT FT Q+ LE F +Q+Y+ ER LA L +T+AQVK
Sbjct: 3 RRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62
Query: 81 VWFQNRRIKWRKQHLEFQQQRLAAIKQ 107
WFQNRR KWR+Q E ++ A +
Sbjct: 63 TWFQNRRTKWRRQTAEEREAERQAANR 89
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 82.3 bits (204), Expect = 3e-22
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
++ RT FT QL LE +F ++QY+ ER + +L+LTE QVK+WFQNRR K ++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 82.5 bits (204), Expect = 4e-22
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 27 SCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNR 86
+ +K ++ R +FT Q LE F +Q+Y+ PER +LA + LT QVK+WFQN
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60
Query: 87 RIKWRKQHLE 96
R K ++ E
Sbjct: 61 RYKTKRAQNE 70
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 82.0 bits (203), Expect = 5e-22
Identities = 26/65 (40%), Positives = 32/65 (49%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S + RT FT QL L+ F+ Y E L++ LNL + VWFQN R K
Sbjct: 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQK 61
Query: 90 WRKQH 94
RK
Sbjct: 62 ARKSG 66
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 80.4 bits (199), Expect = 2e-21
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+++RT+F+ QL L+ F++Q+Y+ + L+ LNL+ QVK WFQN+R+K ++
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 80.6 bits (199), Expect = 3e-21
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
K ++ RT+F+ QL L F+RQ+Y+ + L++ LNL+ QVK WF
Sbjct: 11 VAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWF 70
Query: 84 QNRRIKWRKQ 93
QN+R+K ++
Sbjct: 71 QNQRMKSKRW 80
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 79.6 bits (197), Expect = 3e-21
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91
++ R +F+ Q+ LE F++Q+Y+ PER LA L LT QVK+WFQNRR K +
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 79.8 bits (197), Expect = 5e-21
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
S + + KR+RT TPEQLE L ++ ++AH + L + V+VWF
Sbjct: 6 SGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWF 65
Query: 84 QNRRIKWRKQ 93
QN R + RK
Sbjct: 66 QNTRARERKS 75
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 78.5 bits (194), Expect = 1e-20
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95
++ R +F+ Q+ LE F++Q+Y+ PER +LA ++LT QVK+WFQN R K ++Q
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 96 EFQQQR 101
+ Q+
Sbjct: 63 DKAAQQ 68
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 78.2 bits (193), Expect = 2e-20
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 29 SSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88
SS SS + + + EQL L+ F R Q+ E +L L+ +V+ WF +RR
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61
Query: 89 KWRKQ 93
R
Sbjct: 62 HCRNL 66
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 77.4 bits (191), Expect = 4e-20
Identities = 35/75 (46%), Positives = 46/75 (61%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S +R RT FT EQ+E LE EFER Y R LA ++L EA+++VWF NRR K
Sbjct: 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 61
Query: 90 WRKQHLEFQQQRLAA 104
WR++ Q+R +
Sbjct: 62 WRREEKLRNQRRQSG 76
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 77.1 bits (190), Expect = 5e-20
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95
+R RT FT Q+ LE F + +Y+ P L+ L L AQVK+WF+NRR + + Q
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
Query: 96 EFQQQ 100
+ + Q
Sbjct: 63 QHKDQ 67
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 76.6 bits (189), Expect = 8e-20
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S +R RTIFT EQLE LE F+ +Y R LA ++L E +V+VWF+NRR K
Sbjct: 2 SSGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61
Query: 90 WRKQ 93
WR+
Sbjct: 62 WRRS 65
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 76.2 bits (188), Expect = 9e-20
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+R RT FT +QL RLE EF ++ Y+ P R LA LNL E+ +KVWFQNRR+K ++Q
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 76.3 bits (188), Expect = 1e-19
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S KR+RT F QL +++ F + LA LT+ ++VWFQN R K
Sbjct: 2 SSGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 61
Query: 90 WRKQHLEFQQQRLAA 104
+R+ L + ++
Sbjct: 62 FRRNLLRQENGGVSG 76
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 75.7 bits (187), Expect = 1e-19
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91
KS + ++ +P+ LE F R+Q + E+ +A +T QV+VWF N+R++ +
Sbjct: 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 76.9 bits (189), Expect = 1e-19
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
+ +RT FT QL LE EF +Y+ R+ +A TL L E QVK+WF
Sbjct: 23 TAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWF 82
Query: 84 QNRRIKWRKQH 94
QNRR+K +K+
Sbjct: 83 QNRRMKQKKRE 93
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 75.1 bits (185), Expect = 2e-19
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
KR RT F+ EQL RL+ EF +Y+ R L+ L L EAQ+K+WF+N+R K +K
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 75.5 bits (186), Expect = 2e-19
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S +R RT FT QL+ LEA F + +Y R +A +NL E++V+VWF+NRR K
Sbjct: 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61
Query: 90 WRKQHLEFQQQRLAA 104
R+Q + Q +
Sbjct: 62 CRQQQQQQQNGGQSG 76
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 75.3 bits (185), Expect = 3e-19
Identities = 31/75 (41%), Positives = 49/75 (65%)
Query: 20 CKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQV 79
+ +S +++ ++KR RT +T Q LE EF +Y+ R+ +AH L+LTE Q+
Sbjct: 13 KRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQI 72
Query: 80 KVWFQNRRIKWRKQH 94
K+WFQNRR+KW+K+H
Sbjct: 73 KIWFQNRRMKWKKEH 87
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 74.7 bits (184), Expect = 4e-19
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S KR RT T +QL L F+ + +A L + +K WF+N K
Sbjct: 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61
Query: 90 WRKQ 93
R+
Sbjct: 62 ERQS 65
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 74.7 bits (184), Expect = 5e-19
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 26 SSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQN 85
+ K +R RT F+ QL+ LE FER QY R LA NLTEA+++VWFQN
Sbjct: 9 EPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQN 68
Query: 86 RRIKWRKQ 93
RR + RKQ
Sbjct: 69 RRARLRKQ 76
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 74.3 bits (183), Expect = 5e-19
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL 95
+R RT FT Q+E LE F Y LA LNL ++++WFQNRR K ++ H
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 96 EFQQQ 100
E Q
Sbjct: 62 ESQFL 66
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 73.5 bits (181), Expect = 1e-18
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+R RT FT +QL++LEA F+R +Y R +A NLTEA+V+VWF+NRR KWRK+
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 72.4 bits (178), Expect = 3e-18
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
+KR RT +T QL LE EF +Y+ P R+ LA LNLTE +K+WFQNRR+KW+K+
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61
Query: 94 H 94
Sbjct: 62 E 62
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 71.9 bits (177), Expect = 4e-18
Identities = 29/55 (52%), Positives = 33/55 (60%)
Query: 39 RTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
FT QLE LE F R Y R LA + LTEA+++VWFQNRR KWRKQ
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 74.7 bits (183), Expect = 5e-18
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 1 MPKLINEKDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYM 60
M KL +K L +D + ++ + ++ RT LE+ F +
Sbjct: 66 MCKLKPLLNKWLE-ETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKP 124
Query: 61 VGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
E LA +L L + V+VWF NRR K ++
Sbjct: 125 SAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 72.2 bits (177), Expect = 5e-18
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 29 SSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88
+ ++ +R R +T Q LE EF Y+ R+ +AH L+LTE Q+K+WFQNRR+
Sbjct: 14 AGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRM 73
Query: 89 KWRKQH 94
K +K+
Sbjct: 74 KLKKEI 79
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 71.7 bits (176), Expect = 7e-18
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 35 SKRVRTIFTPEQLERLEAEFER-QQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
S + + T +Q+E LE F + ++ +A LTE Q + WF+ R +WR+
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 71.0 bits (174), Expect = 1e-17
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S ++ R ++ QL LE E+ +++ +R ++ +L+E Q+ +WFQNRR+K
Sbjct: 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61
Query: 90 WRKQH 94
+K
Sbjct: 62 EKKSG 66
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 70.1 bits (172), Expect = 2e-17
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 34 KSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
K+ RVRT+ +QL L + + L L+ ++VWFQN+R K +K+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 94 HLEFQ 98
+ +
Sbjct: 62 SIMMK 66
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 69.9 bits (171), Expect = 4e-17
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
+P++ + +++ R +T Q LE EF Y+ R +A LNLTE QVK+WF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 84 QNRRIKWRKQHLEFQQ 99
QNRR+K +K + + +
Sbjct: 62 QNRRMKMKKINKDRAK 77
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 69.4 bits (170), Expect = 5e-17
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 35 SKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94
KR R +T Q LE EF +Y+ R+ +AH L+LTE Q+K+WFQNRR+KW+K++
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 71.5 bits (175), Expect = 8e-17
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 1 MPKLINEKDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYM 60
+ K +N+ + LS S L S S+ ++ RT LE F Q
Sbjct: 67 LEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKP 126
Query: 61 VGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ +A LN+ + ++VWF NRR K ++
Sbjct: 127 TSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 70.8 bits (173), Expect = 9e-17
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 16 SDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLT 75
+ + + ++ + ++ RT + + LE F E + +A LNL
Sbjct: 68 EEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLE 127
Query: 76 EAQVKVWFQNRRIKWRK 92
+ V+VWF NRR + ++
Sbjct: 128 KEVVRVWFCNRRQREKR 144
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 68.9 bits (168), Expect = 6e-16
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 13 SPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTL 72
+ + + ++ SK ++ RT FTP+ +E L A FE+ G E +A L
Sbjct: 71 AELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL 130
Query: 73 NLTEAQVKVWFQNRRIKWRK 92
N V+VWF NRR +
Sbjct: 131 NYDREVVRVWFSNRRQTLKN 150
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 66.4 bits (162), Expect = 9e-16
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
S + ++ R +T QL+ LE E+ +++ +R ++ T NL+E QV +WFQNRR+K
Sbjct: 2 SHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 61
Query: 90 WRKQH 94
+K
Sbjct: 62 EKKVI 66
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 65.5 bits (160), Expect = 2e-15
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 35 SKRVRTIFTPEQLERLEAEFERQ-QYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQ 93
T +Q+E LE F + ++ +A LTE Q + WF+ R +WR+
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 65.0 bits (158), Expect = 5e-15
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN---------------L 74
SS S + R + E L +E+ F QY +R +A+ N +
Sbjct: 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERV 61
Query: 75 TEAQVKVWFQNRRIKWRKQH 94
T +V WF NRR + +++
Sbjct: 62 TSLKVYNWFANRRKEIKRRA 81
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 64.0 bits (155), Expect = 4e-14
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 1 MPKLINEKDKLLSPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYM 60
M KL +K + + + S + KR RT LE F +
Sbjct: 63 MSKLRPLLEKWVEEADN-NENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKP 121
Query: 61 VGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ ++A+ L L + V+VWF NRR K ++
Sbjct: 122 SLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 61.3 bits (149), Expect = 6e-14
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ T EQ+ L+A F + Q+ E L L +++K WF + R + ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
Query: 93 QHLE 96
+
Sbjct: 62 GIVH 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 61.0 bits (148), Expect = 1e-13
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEF-ERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRI 88
SS S R RT + E L L++ + Y L+ L+L + + +FQN+R
Sbjct: 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61
Query: 89 KWRKQ 93
+
Sbjct: 62 HVKHS 66
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 54.5 bits (131), Expect = 3e-11
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S PEQL LE+ F + + E L +T ++ WF RR K
Sbjct: 2 SSGSSGPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
Query: 90 WRKQH 94
+
Sbjct: 62 VNAEE 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 53.8 bits (129), Expect = 9e-11
Identities = 14/70 (20%), Positives = 24/70 (34%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
S S + + + T Q++ LE F + + E L L+ ++ WF
Sbjct: 2 SSGSSGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWF 61
Query: 84 QNRRIKWRKQ 93
RR
Sbjct: 62 SERRKLRDSM 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 54.5 bits (130), Expect = 2e-10
Identities = 18/83 (21%), Positives = 32/83 (38%)
Query: 19 KCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQ 78
CK+ + K+ R +FT Q L A F+ + ++ ++ L L +
Sbjct: 81 ACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 140
Query: 79 VKVWFQNRRIKWRKQHLEFQQQR 101
V +F N R + + LE
Sbjct: 141 VSNFFMNARRRSLDKWLEHHHHH 163
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 51.2 bits (122), Expect = 1e-09
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 43 TPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQH 94
T EQL L+A F + E L LT ++ WF ++ +
Sbjct: 19 TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 51.0 bits (121), Expect = 2e-09
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 21/89 (23%)
Query: 27 SCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN------------- 73
+ + K +R R + P + L +ERQ+ ER L N
Sbjct: 1 ARIDPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQ 60
Query: 74 --------LTEAQVKVWFQNRRIKWRKQH 94
+TE +V WF NRR + +H
Sbjct: 61 AQGLGSNLVTEVRVYNWFANRRKEEAFRH 89
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 47.9 bits (113), Expect = 1e-07
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 14 PSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN 73
+ P+ + K +R R + P + L +ERQ+ ER L N
Sbjct: 94 THAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153
Query: 74 ---------------------LTEAQVKVWFQNRR 87
+TE +V WF NRR
Sbjct: 154 RAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 45.9 bits (108), Expect = 1e-07
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWF 83
+ S S TPEQL L++ F R Q+ E LA L + WF
Sbjct: 14 VLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWF 73
Query: 84 QNRRIKWRKQHLEFQQQ 100
+ R W+ +L++
Sbjct: 74 GDTRYAWKNGNLKWYYY 90
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 46.9 bits (110), Expect = 3e-07
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 21/85 (24%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN---------- 73
+ ++ K +R R + P + L ++RQ+ ER L N
Sbjct: 131 DDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVS 190
Query: 74 -----------LTEAQVKVWFQNRR 87
+TE +V WF NRR
Sbjct: 191 PSKAHGLGSNLVTEVRVYNWFANRR 215
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 43.8 bits (102), Expect = 6e-07
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 29 SSSSSKSKRVRTIFTPEQLERLEAEFER----QQYMVGPERLYLAHTLNLTEAQVKVWFQ 84
SS SS + + RT F+ L L+ ++ + + +A LN+ V+ W
Sbjct: 2 SSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIG 61
Query: 85 NRRIKWRKQHLE 96
NRR K+R +E
Sbjct: 62 NRRRKYRLMGIE 73
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 42.3 bits (99), Expect = 2e-06
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 32 SSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWR 91
SS S R T EQL L++ F + Q+ + L L ++ WF + R +
Sbjct: 2 SSGSSGKR--KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59
Query: 92 KQHL 95
L
Sbjct: 60 HGQL 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 40.9 bits (96), Expect = 4e-06
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 29 SSSSSKSKRVRTIFTPEQLERLEAEFERQ-QYMVGPERLYLAHTLNLTEAQVKVWFQNRR 87
SS SS + + E + LE F +Y L+ L+ + +++ WF++RR
Sbjct: 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRR 61
Query: 88 IKWRK 92
+ +
Sbjct: 62 NQDKP 66
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 37.1 bits (86), Expect = 1e-04
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 43 TPEQLERLEAEFERQ-QYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
T + LE F ++ L+ L+ ++ WF+ RR + +
Sbjct: 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 36.1 bits (83), Expect = 3e-04
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQYMVG----PERLYLAHTLNLTEAQV 79
S S+ SSS +KR RT FT EQ E++ A ER + + + +
Sbjct: 6 SGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65
Query: 80 KVWFQNRRIKWRK 92
K+W N +
Sbjct: 66 KIWMHNNKNSGPS 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.001
Identities = 16/116 (13%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 17 DLKCKKLSPSSCSS-----SSSKSKRVRTI-----FTPEQLERLEAEFERQQYMVGPERL 66
+L CK L + S++ + + TP++++ L ++ + P +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 67 YLAH--TLNLTEAQVKVWFQNRRIKWRKQHLEFQQQRLAAIKQSQLNQQQENLHQQ 120
+ L++ ++ W+ + + +L I +S LN + +++
Sbjct: 323 LTTNPRRLSIIAESIRDGL-ATWDNWKHVNCD----KLTTIIESSLNVLEPAEYRK 373
Score = 30.2 bits (67), Expect = 0.22
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 67/193 (34%)
Query: 7 EKDKLLSPSSDLKCKKLSPSSCSSS--------------SSKSKRVRTIFTPEQ------ 46
E LL D + + L +++ + + + +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 47 -LERLEAEFERQQYM---VGPERLYL-AHTLNLTEAQVKVW--------------FQNRR 87
L LE R+ + V P ++ L+L +W
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKLHKYS 415
Query: 88 I--KWRKQ--------HLEFQQQR--LAAIKQSQLNQ-------QQENLHQQSSDQ---H 125
+ K K+ +LE + + A+ +S ++ ++L DQ
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 126 HTSQHQYLFQQGE 138
H H + E
Sbjct: 476 HIGHHLKNIEHPE 488
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 32.5 bits (74), Expect = 0.009
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 13 SPSSDLKCKKLSPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQ---YMVGPERLYLA 69
+ S+D + + S+K R FT E + LE+ F + Y+ L
Sbjct: 6 NKSADGLVFNVVTQDMINKSTKPYR-GHRFTKENVRILESWFAKNIENPYLDTKGLENLM 64
Query: 70 HTLNLTEAQVKVWFQNRRIKWR 91
+L+ Q+K W NRR K +
Sbjct: 65 KNTSLSRIQIKNWVSNRRRKEK 86
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger
homeobox family protein, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.4.1.1
Length = 80
Score = 31.9 bits (72), Expect = 0.013
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 24 SPSSCSSSSSKSKRVRTIFTPEQLERLEAEFERQQY-MVGPERLYLAHT---LNLTEAQV 79
S SS + KR RT FT EQ ER+ A ER + + + + + +
Sbjct: 6 SGSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVL 65
Query: 80 KVWFQNRR 87
KVW N +
Sbjct: 66 KVWLHNNK 73
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 33.2 bits (76), Expect = 0.020
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 36 KRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
+P+ LE F R+Q + E+ +A +T QV+VWF N+R++
Sbjct: 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 30.4 bits (68), Expect = 0.043
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
L L+A + E +A ++NL VK WF+ +
Sbjct: 13 NLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 30.0 bits (68), Expect = 0.047
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
L +L+ Q+K W NRR K +
Sbjct: 30 GLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 30.2 bits (67), Expect = 0.079
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 21/78 (26%)
Query: 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLN----------------- 73
SS S R R + P + L ++RQ+ ER L N
Sbjct: 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGL 61
Query: 74 ----LTEAQVKVWFQNRR 87
+TE +V WF NRR
Sbjct: 62 GSNLVTEVRVYNWFANRR 79
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 29.8 bits (67), Expect = 0.095
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 33 SKSKRVRTIFTPEQLERLEAEFERQQ---YMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
+K R FT E + LE+ F + Y+ L +L+ Q+K W RR K
Sbjct: 1 TKPYR-GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
Query: 90 WRKQ 93
+
Sbjct: 60 EKTI 63
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 29.3 bits (66), Expect = 0.12
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQ 100
+ LA +T +QV WF N+RI+++K +FQ++
Sbjct: 33 AKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEE 69
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 28.7 bits (63), Expect = 0.16
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S + P ++ LE + Q + + L+ L+ QV WF +R +
Sbjct: 2 SSGSSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQ 60
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 28.6 bits (64), Expect = 0.24
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLEFQQQ 100
+ LA +T +QV WF N+RI+++K +FQ++
Sbjct: 33 AKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEE 69
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 27.3 bits (60), Expect = 0.29
Identities = 11/16 (68%), Positives = 16/16 (100%)
Query: 78 QVKVWFQNRRIKWRKQ 93
Q+K+WFQNRR+KW+K+
Sbjct: 2 QIKIWFQNRRMKWKKR 17
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 25.9 bits (56), Expect = 1.7
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 31 SSSKSKRVRTIFTPEQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIK 89
SS S + + + L+A + E L ++ + L + VK WF+ R++
Sbjct: 2 SSGSSGSPINPYK-DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 64
Score = 25.7 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQNRRIKWRK 92
+ LA +T +QV WF N+RI+++K
Sbjct: 35 AKEELAKKCGITVSQVSNWFGNKRIRYKK 63
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP:
c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 27.1 bits (61), Expect = 2.2
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
+ R+I LER+ A
Sbjct: 129 AAGLTRSIGVSNHLVPHLERIVAATG 154
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium
smegmatis} PDB: 2wzt_A
Length = 283
Score = 26.7 bits (60), Expect = 2.3
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
+ R+I F E LE + +
Sbjct: 137 EDGIARSIGVCNFGAEDLETIVSLTY 162
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 26.8 bits (60), Expect = 2.5
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
K +++I F L+RL E
Sbjct: 149 KEGLIKSIGVCNFQIHHLQRLIDETG 174
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 25.4 bits (56), Expect = 3.1
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQ---YMVGPERLYLAHTLNLTEAQVKVWFQN- 85
SS S K R + + + + Y E+ +A NLT QV WF N
Sbjct: 2 SSGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 61
Query: 86 RRIKWR 91
RR +
Sbjct: 62 RRRILQ 67
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 26.4 bits (59), Expect = 3.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
+ RV++I F LERL E
Sbjct: 152 EEGRVKSIGVSNFRTADLERLIKESG 177
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 25.0 bits (55), Expect = 3.5
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQN-RRIKWR 91
++ LA LT QV WF N RR +
Sbjct: 30 QKKQLAQDTGLTILQVNNWFINARRRIVQ 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.6
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVK 80
+ L++L+A + Y + A L + +A ++
Sbjct: 20 QALKKLQASL--KLY--ADDS---APALAI-KATME 47
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: CIT; 1.60A {Leishmania major}
Length = 288
Score = 26.4 bits (59), Expect = 3.8
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
K K+VR I F LE + A
Sbjct: 143 KEKKVRAIGVSNFHIHHLEDVLAMCT 168
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 3.9
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 17/64 (26%)
Query: 45 EQLERLEAEFERQQYMVGPERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHL-------EF 97
++L+ L+A + + + +L E W Q + + K + F
Sbjct: 96 KRLQELDAASKVME-----QEWREKAKKDLEE-----WNQRQSEQVEKNKINNRIADKAF 145
Query: 98 QQQR 101
QQ
Sbjct: 146 YQQP 149
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 26.0 bits (58), Expect = 4.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
+ K+VR I F P L L +
Sbjct: 138 EEKKVRAIGVSNFEPHHLTELFKSCK 163
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 26.2 bits (58), Expect = 4.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 39 RTIFTPEQLERLEAEFERQ 57
+ FT Q ER + + R+
Sbjct: 266 KNHFTVAQNERFDEIYRRK 284
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural
genomics, montreal-kingston bacterial structural
genomics initiative; 2.16A {Escherichia coli} PDB:
2r1a_A
Length = 159
Score = 25.9 bits (56), Expect = 4.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 31 SSSKSKRVRTIFTPEQLE 48
S K KRV T+ P QL+
Sbjct: 127 FSDKGKRVTTVLVPSQLQ 144
>3it8_D 2L protein; MHC class I homolog, cell membrane, cytokine, disulfide
bond glycoprotein, lipoprotein, membrane, myristate;
HET: NAG; 2.80A {Yaba-like disease virus}
Length = 324
Score = 26.2 bits (57), Expect = 4.4
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 82 WF-QNRRIKWRKQHLEFQQQRLAAIKQSQLNQQQENLHQQSSDQHHTSQHQY 132
WF +R F S + + E +++ S + +
Sbjct: 50 WFNISRSPHTPGNDYNFN------FWYSLMKETLEEINKNDSTKTTSLSLIT 95
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide
degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A
{Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A*
3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Length = 472
Score = 26.2 bits (57), Expect = 4.4
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 3 KLINEKDKLLSPSSDLKCKKLSPSSCSSSSSK 34
N ++ ++ PS P +C+++S+
Sbjct: 423 TANNRRNSVVPPSWGETSASSVPGTCAATSAS 454
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT;
2.10A {Trypanosoma brucei}
Length = 281
Score = 25.9 bits (58), Expect = 4.4
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
K+VR I F +E L +
Sbjct: 134 ADKKVRAIGVSNFHEHHIEELLKHCK 159
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans
serovar lai} PDB: 3ubl_A*
Length = 242
Score = 25.8 bits (57), Expect = 5.0
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 25/107 (23%)
Query: 47 LERLEAEFERQQYMVGPERLYLA--------HTLNLTEAQVKVWFQ--NRRIKWRKQHLE 96
++ L+ Y+ G LA L+ + W K++
Sbjct: 133 IKALQRVVRFSPYIAG-NVFTLADCSGFAHLSVLDEELRPFYPNNHPLDLLNGW-KEYFV 190
Query: 97 FQQQR-------------LAAIKQSQLNQQQENLHQQSSDQHHTSQH 130
F + + + +++ ENL+ QS HH H
Sbjct: 191 FMKTKAGPALVEKDKQILKKILARAKTKIGAENLYFQSHHHHHHWSH 237
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 25.1 bits (55), Expect = 5.0
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 30 SSSSKSKRVRTIFTPEQLERLEAEFERQQ---YMVGPERLYLAHTLNLTEAQVKVWFQN- 85
SS S K+ + E ++ L + + Y E+ L+ NL+ Q+ WF N
Sbjct: 2 SSGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINA 61
Query: 86 RRIKWRK 92
RR
Sbjct: 62 RRRILPD 68
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU;
2.64A {Bacteroides thetaiotaomicron}
Length = 325
Score = 25.8 bits (57), Expect = 5.1
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 88 IKWRKQHLEFQQQRLAAIKQSQLNQQQENLHQQSSDQHHTSQH 130
++ + H+ +++ + ++ + Q +HH H
Sbjct: 284 MQLQTTHISELDKKIETL-NGRIGGYLSQVATQQVLEHHHHHH 325
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus
subtilis} PDB: 3d3f_A*
Length = 276
Score = 25.9 bits (58), Expect = 5.2
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
K ++R I F LE L + E
Sbjct: 131 KDGKIRAIGVSNFQVHHLEELLKDAE 156
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 25.6 bits (57), Expect = 5.6
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
K ++R I F LE L + E
Sbjct: 165 KDGKIRAIGVSNFQVHHLEELLKDAE 190
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 25.7 bits (56), Expect = 6.7
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 39 RTIFTPEQLERLEAEFERQ 57
R F E ++ E +
Sbjct: 320 RDYFDEEMTKQAEKWIKDN 338
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 25.5 bits (56), Expect = 7.0
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 39 RTIFTPEQLERLEAEFERQ 57
+ FT Q E + +++++
Sbjct: 275 KNYFTVAQNEEFDKDYQKK 293
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics,
joint center for structural genomics, PSI, protein
structure initiative; HET: NAP; 2.40A {Thermotoga
maritima} SCOP: c.1.7.1
Length = 298
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 34 KSKRVRTI----FTPEQLERLEAEFE 55
K VR I F P++L L E
Sbjct: 142 KDGLVRAIGVSNFYPDRLMDLMVHHE 167
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 24.4 bits (53), Expect = 8.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 64 ERLYLAHTLNLTEAQVKVWFQNRRIKWRKQHLE 96
E+ L+ +L+ QV WF N R + L
Sbjct: 37 EKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.125 0.353
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,950,028
Number of extensions: 98547
Number of successful extensions: 560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 152
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)