BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10639
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR E C+YG++C+FAH + ELR RH +Y+T LCR +H G C YG RC
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173
Query: 110 SFIHRVPGEEVDPVKKYREIHGD 132
FIH EE + R++ D
Sbjct: 174 HFIHNA--EERRALAGARDLSAD 194
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR E C+YG++C+FAH + ELR RH +Y+T LCR +H G C YG RC
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173
Query: 110 SFIHRVPGEEVDPVKKYREIHGD 132
FIH EE + R++ D
Sbjct: 174 HFIHNA--EERRALAGGRDLSAD 194
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 84 VRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115
V RY+T LCR + NG C YG +C F H +
Sbjct: 110 VNSSRYKTELCRPFEENGACKYGDKCQFAHGI 141
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR E C+YG++C+FAH + ELR RH +Y+T LCR +H G C YG RC
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173
Query: 110 SFIHRVPGEEVDPVKKYREIHGD 132
FIH EE + R++ D
Sbjct: 174 HFIHNA--EERRALAGGRDLSAD 194
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 84 VRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115
V RY+T LCR + NG C YG +C F H +
Sbjct: 110 VNSSRYKTELCRPFEENGACKYGDKCQFAHGI 141
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
++ RYKTELCR E C+YGE+C+FAH ELR RH +Y+T LCR +H G C Y
Sbjct: 127 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 186
Query: 106 GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATR 145
G RC FIH + +E R PGA R
Sbjct: 187 GPRCHFIH------------------NAEERRQAPGAGER 208
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 45/70 (64%)
Query: 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
++ RYKTELCR E C+YGE+C+FAH ELR RH +Y+T LCR +H G C Y
Sbjct: 122 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 181
Query: 106 GTRCSFIHRV 115
G RC FIH
Sbjct: 182 GPRCHFIHNA 191
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81
+YKTELCR+ C YG RC F H+ +E R
Sbjct: 164 KYKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 45/70 (64%)
Query: 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
++ RYKTELCR E C+YGE+C+FAH ELR RH +Y+T LCR +H G C Y
Sbjct: 149 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 208
Query: 106 GTRCSFIHRV 115
G RC FIH
Sbjct: 209 GPRCHFIHNA 218
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRP 82
+YKTELCR+ C YG RC F H+ +E RP
Sbjct: 191 KYKTELCRTFHTIGFCPYGPRCHFIHNADERRP 223
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
++ RYKTELCR E C+YGE+C+FAH ELR RH +Y+T LCR +H G C Y
Sbjct: 129 VNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 188
Query: 106 GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATR 145
G RC FIH + +E R PGA R
Sbjct: 189 GPRCHFIH------------------NAEERRQAPGAGER 210
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
++ RYKTELCR E C+YGE+C+FAH ELR RH +Y+T LCR +H G C Y
Sbjct: 97 VNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 156
Query: 106 GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATR 145
G RC IH + +E R PGA R
Sbjct: 157 GPRCHLIH------------------NAEERRQAPGAGER 178
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNY 105
++ RYKTELCR E C+YGE+C+FAH ELR RH +Y+T CR +H G C Y
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPY 190
Query: 106 GTRCSFIHRV 115
G RC F+H
Sbjct: 191 GPRCHFVHNA 200
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR+ C+YG +C+FAH + ELR P RH +Y+T LC ++ G C YG+RC
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTELCHKFYLQGRCPYGSRC 160
Query: 110 SFIHRVPGEEV 120
FIH P E++
Sbjct: 161 HFIHN-PSEDL 170
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
+KTELC E C YG++C+FAH V ELRP +RH RY+T++CR GVC YG RC
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCH 328
Query: 111 FIHRV 115
F H +
Sbjct: 329 FRHSI 333
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSV 77
RYKT++CR + C YG RC F HS+
Sbjct: 306 RYKTQVCRMVLAGGVCPYGHRCHFRHSI 333
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR+ C+YG +C+FAH + ELR RH +Y+T LC ++ G C YG+RC
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPYGSRC 160
Query: 110 SFIHRVPGEEV 120
FIH P E++
Sbjct: 161 HFIHN-PSEDL 170
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR+ C+YG +C+FAH + ELR RH +Y+T LC ++ G C YG+RC
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRC 162
Query: 110 SFIHRVPGEEV 120
FIH P E++
Sbjct: 163 HFIHN-PSEDL 172
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR+ C+YG +C+FAH + ELR RH +Y+T LC ++ G C YG+RC
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRC 154
Query: 110 SFIHRVPGEEV 120
FIH P E++
Sbjct: 155 HFIHN-PTEDL 164
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
RYKTELCR+ C+YG +C+FAH ELR RH +Y+T LC ++ G C YG+RC
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTELCHKFYLQGRCPYGSRC 155
Query: 110 SFIHRVPGEEV 120
FIH P E++
Sbjct: 156 HFIHN-PTEDL 165
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
+KTELC E C YG++C+FAH V ELRP +RH RY+T +CR VC YG RC
Sbjct: 259 FKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCH 318
Query: 111 FIHRV-PGEEV 120
F H + P E +
Sbjct: 319 FRHSLTPAERL 329
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSV 77
RYKT +CR + C YG RC F HS+
Sbjct: 296 RYKTAVCRMVLAGDVCPYGHRCHFRHSL 323
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
KTELC + C YG+ C+FAH ++ELRP +RH RY+T +CR +C YG RC
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCH 292
Query: 111 FIHRVPGEE 119
F H + +E
Sbjct: 293 FRHSLTDQE 301
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
RYKTE+CR + C YG RC F HS+ +
Sbjct: 270 RYKTEVCRMMVTGAMCPYGHRCHFRHSLTD 299
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 23 FHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRS-LEGYRPCQYGERCRFAHSVEELR 81
FH+ E R +P E+D P YKT LC G +PC G RC+FAH ++ELR
Sbjct: 245 FHEHRGEKFGRRGFPIPETDS--QQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELR 302
Query: 82 P---PVRH--YRYRTRLCRNYHHNGV--CNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
P R+ +Y+T+LC+N+ G C YG RC F+H +E + Y+ + D Q
Sbjct: 303 ATDAPARYPNNKYKTKLCKNFARGGTGFCPYGLRCEFVHPT-DKEFQNIPPYQRMSHDDQ 361
Query: 135 E 135
+
Sbjct: 362 D 362
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
YKTE C++ + C+YG +C+FAH +EL+ P RH +Y++ CR++ G C YG RC
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCC 386
Query: 111 FIH 113
F+H
Sbjct: 387 FLH 389
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 6 NWRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPC 65
NW+ R KCQ F E P +P +YK+E CRS Y C
Sbjct: 334 NWQISGTCRYGSKCQ--FAHGNQELKEPPRHP------------KYKSERCRSFMMYGYC 379
Query: 66 QYGERCRFAH 75
YG RC F H
Sbjct: 380 PYGLRCCFLH 389
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSF 111
KTELC + C YG+ C+FAH ++ELRP +RH RY+T +CR C YG RC F
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 283
Query: 112 IHRVPGEE 119
H + +E
Sbjct: 284 RHSLSEQE 291
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
RYKTE+CR + C YG RC F HS+ E
Sbjct: 260 RYKTEVCRMVLAGDNCPYGHRCHFRHSLSE 289
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 48 PIRYKTELCRS-LEGYRPCQYGERCRFAHSVEELRP---PVRH--YRYRTRLCRNYHH-- 99
P +KT LC + G PC G RC+FAH ++ELR P R+ +Y+T+LC+N+
Sbjct: 271 PHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPTRYPNNKYKTKLCKNFARGG 330
Query: 100 NGVCNYGTRCSFIH 113
+GVC YG RC F+H
Sbjct: 331 SGVCPYGLRCEFVH 344
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSF 111
KTELC E C YG RCRFAH ++ELRP +RH RY+T C+ + C YG RC F
Sbjct: 384 KTELCNKWE-RGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHF 442
Query: 112 IH 113
H
Sbjct: 443 RH 444
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 45 LLDPIRYKTELCRS--LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGV 102
L++ YKTELC S ++GY C+YG +C+FAH + EL+ + YRT+ C N+ G
Sbjct: 199 LVNKTLYKTELCESFTIKGY--CKYGNKCQFAHGLNELKFKKKSNNYRTKPCINWSKLGY 256
Query: 103 CNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAAT 144
C YG RC F H G++ D EI+ + + R A T
Sbjct: 257 CPYGKRCCFKH---GDDKD-----VEIYQNANDGRSKDTALT 290
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
YKTELC S C YG +C+FAH + EL+ +RT+ C N+ G C YG RC
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRCC 229
Query: 111 FIH 113
F H
Sbjct: 230 FKH 232
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 50/142 (35%)
Query: 49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYR-------------------- 88
I YKT +C C+ GE C FAH +E+LR P +++
Sbjct: 103 IFYKTRMCAKFRAGT-CRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERER 161
Query: 89 ----------------------YRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKY 126
R +LCR + C YG RC+FIH + + K+
Sbjct: 162 ERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIH-------EDLSKF 214
Query: 127 REIHGDIQETRDIPGAATRGDR 148
RE G ++E+ I AT D+
Sbjct: 215 REDSGKLRESSVISVGATAADQ 236
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 84 VRHYRYRTRLCRNYHHNGVCNYGTRCSFIH----------RVPGEEVDPV 123
V+ ++TRLC + G C +G +C F H RV GE ++ V
Sbjct: 265 VKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAV 314
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 25/130 (19%)
Query: 36 YPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCR 95
P ++ ++ + +KT LC + C +G++C FAH EL
Sbjct: 255 VPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL--------------- 299
Query: 96 NYHHNGVCNY-GTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQSG 154
HN V G + + V + V P + + Q T D G G R +
Sbjct: 300 ---HNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKK---- 352
Query: 155 SSCSSSWSSA 164
C WS +
Sbjct: 353 --CLLKWSDS 360
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 28/134 (20%)
Query: 26 RGPEDIHRP--IYPYQESDRFLLDPIRYKTE------------LCRSLEGYRPCQYGERC 71
RG E +P + P+++ ++ +D K E LC + C++ E C
Sbjct: 61 RGLEAKIKPEFVLPFKKIEKVEVDKAAKKKEFRNQLRESMNDKLCPKISKGLVCEFNETC 120
Query: 72 RFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSF--IHRVPGE---------EV 120
+F+H VE+ + +C+N+ G C YG C F H V + +V
Sbjct: 121 KFSHDVEKY---LASKPKSIGICQNFQTYGECKYGLNCYFGECHIVDNKTIVNKELIGKV 177
Query: 121 DPVKKYREIHGDIQ 134
+PVK E+ +IQ
Sbjct: 178 EPVKTLNEVSNEIQ 191
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 65 CQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDP 122
C GE C F+HS+E RP +C+ Y G C +G +C+ H +PG P
Sbjct: 55 CTAGENCPFSHSLETERP----------ICK-YFLKGNCKFGPKCALSHALPGNTNLP 101
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 79 ELRPPVRHYR------YRTRLCRNYHHNGVCNYGTRCSFIH-RVPGEEVDPVKKYREIHG 131
EL+P + + ++ +C+++ G C YG C F+H R + P+KK EI G
Sbjct: 83 ELKPLAANIKTTIITDFQPDVCKDFQQIGYCGYGDTCKFLHVRDESRQKIPIKKDWEIGG 142
Query: 132 --DIQETRDIP 140
+++E DIP
Sbjct: 143 QKEVKEKEDIP 153
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 65 CQYGERCRFAH--------SVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP 116
C+YGE CRF+H SV EL R + C Y NG C +G+ C F H P
Sbjct: 163 CKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDP 222
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 40 ESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTR------- 92
E ++ P+R +E C C+YG C+F H V + + R R R
Sbjct: 91 EKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRR-KLQIGRERVRERDEDVENP 149
Query: 93 ---LCRNYHHNGVCNYGTRCSFIH 113
C+ Y G C YG C F H
Sbjct: 150 KLMECKYYFRTGGCKYGESCRFSH 173
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 65 CQYGERCRFAHSVEELRPPVRHYRYRTRL---------------CRNYHHNGVCNYGTRC 109
C++GERC+F H + L + + + C Y G C YG C
Sbjct: 435 CKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATC 494
Query: 110 SFIHRVPGE 118
F H PGE
Sbjct: 495 KFDHPPPGE 503
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 65 CQYGERCRFAHSVEELRPPVRHY-----RYRTRLCRNYHHNGVCNYGTRCSFIH 113
C+YG +C+F H EE V R +C Y G C +G C F H
Sbjct: 240 CKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHH 293
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 32 HRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSV---------EELRP 82
H PIYP + ++ C R C++GE CRF H + + P
Sbjct: 167 HLPIYPQRAGEKD-----------CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAP 215
Query: 83 PVRHYRYRTRL----CRNYHHNGVCNYGTRCSFIH 113
V + Y R C Y C YG++C F H
Sbjct: 216 VVPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNH 250
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 56 CRSLEGYRPCQYGERCRFAHSVEE--------LRPPVRHYRYRTRLCRNYHHNGVCNYGT 107
CR C+YG+ C+++H E L P V R C N+ G C +G
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGA 326
Query: 108 RCSFIHRV 115
C F H +
Sbjct: 327 NCKFDHSM 334
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 65 CQYGERCRFAHSVEELRPPVRHYRYRT--RLCRNYHHNGVCNYGTRCSFIH 113
C YG CR+ H + L + +YR + R+ + G C YG C + H
Sbjct: 59 CGYGNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDCETGACKYGPTCKYHH 109
>sp|A7TQ73|DUS3_VANPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DUS3 PE=3
SV=1
Length = 664
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 58 SLEGYRPCQYGERCRFAHSVEEL----RPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFI 112
S +G CQ+G++CRF H ++E +P + ++ ++C + G C G +C F+
Sbjct: 102 SEDGESLCQFGDKCRFVHDIKEYLSHKKPEIELDQF--KICPVFDALGFCPMGFKCRFM 158
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 65 CQYGERCRFAHSVEEL--RPPVRHYRYRTRL---------------CRNYHHNGVCNYGT 107
CQ G C+F+H L P HY + L C N+ NG+C G
Sbjct: 443 CQQGNLCKFSHDTTPLTKSKPCTHYARGSCLKGDDCPYDHELSKYPCHNFMENGMCIRGD 502
Query: 108 RCSFIHRVPGEEVDPVKKYREIHG-DIQETRDIPGAATRGDRSRIQSGSSCSS 159
+C F H +P E ++ + + E + +R S + SG +S
Sbjct: 503 KCKFSHVIPTAEGPSTPDAKKSNASSVPEKANCQEQTSRQKTSTVYSGEPATS 555
>sp|A3BUD2|C3H57_ORYSJ Putative zinc finger CCCH domain-containing protein 57 OS=Oryza
sativa subsp. japonica GN=Os08g0491700 PE=4 SV=1
Length = 605
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 65 CQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFI-HRVPGEE--VD 121
C G+ C +AHS +ELR +YRT CR + C YG +C + HR+ E VD
Sbjct: 534 CSSGDGCEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKCRYKQHRLAREPLYVD 593
Query: 122 PVKKYREI 129
P E+
Sbjct: 594 PFLTGHEL 601
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 65 CQYGERCRFAHSVEE-----------LRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
C+YGE CRF H++ + L P+R C Y NG C YG C F H
Sbjct: 173 CKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVE---CPYYMRNGSCKYGAECKFNH 229
Query: 114 RVP 116
P
Sbjct: 230 PDP 232
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRL----------CRNY 97
P+R E C C++G C+F H + R + R + C+ Y
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYY 167
Query: 98 HHNGVCNYGTRCSFIHRVP 116
G C YG C F H +P
Sbjct: 168 FRTGGCKYGETCRFNHTIP 186
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 37 PYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVE 78
PY +D+ L P+R +C Y C++G CRF HSV+
Sbjct: 381 PYALNDKGL--PLRPDQNICTYYSRYGICKFGPACRFDHSVQ 420
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 29/107 (27%)
Query: 49 IRYKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGT 107
+ K E+C L+GY C G +C+ H++ LC ++ G+C G+
Sbjct: 744 VSRKAEVCSDFLKGY--CPLGAKCKKKHTL---------------LCPDFARRGICPRGS 786
Query: 108 RCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQSG 154
+C +HR ++ HG IPG + RS+ +G
Sbjct: 787 QCQLLHR-----------NQKRHGRRTAAPPIPGPSDGAPRSKASAG 822
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTR 92
+YKT +CR L C G C FAHS EEL YR R +
Sbjct: 410 KYKTSMCRDLRQQGGCPRGTNCTFAHSQEEL----EKYRLRNK 448
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 83 PVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQET-RDIPG 141
P + +Y+T +CR+ G C GT C+F H EE++ KYR + I T R P
Sbjct: 405 PQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHS--QEELE---KYRLRNKKINATVRTFPL 459
Query: 142 AATRGDRSRIQS--GSSCSSSWSSASNASYSP---GWSTASSKTFEFPHRA 187
G + + + G+ S S+ + P G S A + + R+
Sbjct: 460 LNKVGVNNTVTTTAGNVISVIGSTETTGKIVPSTNGISNAENSVSQLISRS 510
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTR 92
+YKT +CR L C G C FAHS EEL YR R +
Sbjct: 410 KYKTSMCRDLRQQGGCPRGTNCTFAHSQEEL----EKYRLRNK 448
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 83 PVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
P + +Y+T +CR+ G C GT C+F H
Sbjct: 405 PQPNSKYKTSMCRDLRQQGGCPRGTNCTFAH 435
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 29/87 (33%)
Query: 62 YRPCQYGERCRFAHSVEELRPPVRHY-----------------------------RYRTR 92
+ C++G CRF H PP + Y R T
Sbjct: 102 FGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGTG 161
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEE 119
LC Y + G+C +GT C F H PG +
Sbjct: 162 LCSYYMNRGICKFGTNCKFDHPDPGSD 188
>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1
Length = 343
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 11 ARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGER 70
A F QK Q+E + + I+R I YQ+ + P T + + G R
Sbjct: 132 AIFERSQKIQEELRGKEDDKIYRGINNYQK----YMKP--KDTSMGNASSGMV------R 179
Query: 71 CRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
+ E LR VR + Y+ +C++Y G C +G C F+H
Sbjct: 180 KGPIRAPEHLRATVR-WDYQPDICKDYKETGFCGFGDSCKFLH 221
>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1
Length = 343
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 11 ARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGER 70
A F QK Q+E + + I+R I YQ+ + P T + + G R
Sbjct: 132 AIFERSQKIQEELRGQEDDKIYRGINNYQK----FMKP--KDTSMGNASSGMV------R 179
Query: 71 CRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
+ E LR VR + Y+ +C++Y G C +G C F+H
Sbjct: 180 KGPIRAPEHLRATVR-WDYQPDICKDYKETGFCGFGDSCKFLH 221
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 51 YKTELCRSL--EGYRPCQYGERCRFAHSVEELRPPVRHYRYRTR 92
YKT LC + EGY C Y + C +AH +ELR P R Y +R
Sbjct: 99 YKTRLCDAFRREGY--CPYNDNCTYAHGQDELRVPRRRQEYYSR 140
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 85 RHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
+H Y+TRLC + G C Y C++ H
Sbjct: 95 KHTEYKTRLCDAFRREGYCPYNDNCTYAH 123
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 65 CQYGERCRFAHSVEELRP-PVRHY----------------RYRTRLCRNYHHNGVCNYGT 107
C++ +RC+F H ++ P P ++ R +C Y GVC +G
Sbjct: 382 CKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGM 441
Query: 108 RCSFIHRVPGEEVDPV 123
+C F H P E + V
Sbjct: 442 QCKFDHPPPQEAIAKV 457
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 83 PVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGA 142
P +H +Y+T +CR+ G C G C+F H EE++ K+R+++ + R P +
Sbjct: 408 PPQHSKYKTYMCRDMKQRGGCPRGASCTFAHS--QEELE---KFRKMNKRLVPRR--PLS 460
Query: 143 ATRGDRSRIQSGSSCSSSWSSASNAS 168
A+ G + + S+ S SA + S
Sbjct: 461 ASLGQLNEVGLPSAPILSDESAVDLS 486
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80
+YKT +CR ++ C G C FAHS EEL
Sbjct: 413 KYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
+YKT+LC++ C + CRFAH EL + C + C G C
Sbjct: 439 KYKTKLCKTFTSGGLCLFAANCRFAHGEVELG--------KKEPCWYFFSGQTCPRGDTC 490
Query: 110 SFIH 113
F H
Sbjct: 491 GFRH 494
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 45 LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGV 102
+L P +KT +C E C +G +C FAH EL +R+ L +GV
Sbjct: 255 ILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL------HRFGGGLVEEEGKDGV 306
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
+KT+LC C Y C FAH+VEELR P +++ G+ GT
Sbjct: 92 FKTKLCCKFRAGT-CPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGM---GTPTV 147
Query: 111 FIHRVPGEE 119
+ +P EE
Sbjct: 148 SVVEIPREE 156
>sp|Q9C0B0|UNK_HUMAN RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1
SV=2
Length = 810
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHN------GVCN 104
YKTE C+ + R C+ G C + H+ ++ R R ++YR+ C N H G C
Sbjct: 216 YKTEPCK--KPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273
Query: 105 YGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIP 140
G C + H ++ P D+Q++ P
Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCP 309
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 29/106 (27%)
Query: 49 IRYKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGT 107
+ K E+C L+GY C G +C+ H++ LC ++ G C G
Sbjct: 749 VSRKAEVCSDFLKGY--CPLGAKCKKKHTL---------------LCPDFARRGACPRGA 791
Query: 108 RCSFIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQS 153
+C +HR ++ H T PG + RSR+ +
Sbjct: 792 QCQLLHRT-----------QKRHSRRAATSPAPGPSDATARSRVSA 826
>sp|Q6EE22|UNK_CANFA RING finger protein unkempt homolog OS=Canis familiaris GN=UNK PE=2
SV=1
Length = 810
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHN------GVCN 104
YKTE C+ + R C+ G C + H+ ++ R R ++YR+ C N H G C
Sbjct: 216 YKTEPCK--KPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273
Query: 105 YGTRCSFIHRVPGEEVDPVKKYREIHGDIQETRDIP 140
G C + H ++ P D+Q++ P
Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCP 309
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 65 CQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVK 124
C+ GE CR++H + + +T +C+ + G C +G RC + H P ++ D V
Sbjct: 32 CKEGENCRYSHDLSSCK--------QTMICK-FFQKGCCAFGDRCRYEHTKPSKQ-DEVP 81
Query: 125 KYR--------EIHGDIQETRDIPGAATRGDRSRIQSGSSCSSSWSSASNASYSPG 172
+ + G + D PG T SG + W +A A + PG
Sbjct: 82 SSKPSMPLTAAPLAGTPEPVSDGPGGTTGAQEKPQGSG---AVDWVNA--AEFVPG 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,824,466
Number of Sequences: 539616
Number of extensions: 3086721
Number of successful extensions: 8396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 7798
Number of HSP's gapped (non-prelim): 572
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)