Query psy10639
Match_columns 189
No_of_seqs 154 out of 1225
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:37:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677|consensus 99.7 5.9E-17 1.3E-21 142.6 5.8 103 7-115 92-201 (332)
2 COG5063 CTH1 CCCH-type Zn-fing 99.2 5.8E-12 1.3E-16 111.4 4.5 98 6-114 235-337 (351)
3 KOG1595|consensus 99.2 1.7E-11 3.7E-16 114.6 7.7 93 11-125 207-299 (528)
4 KOG1677|consensus 99.1 5.3E-11 1.1E-15 104.9 4.1 74 6-87 137-211 (332)
5 COG5063 CTH1 CCCH-type Zn-fing 99.1 8.9E-11 1.9E-15 103.9 5.1 72 45-116 220-299 (351)
6 PF00642 zf-CCCH: Zinc finger 98.7 3.4E-09 7.4E-14 62.3 -0.3 26 51-76 1-26 (27)
7 KOG1040|consensus 98.5 6.6E-08 1.4E-12 86.8 2.2 58 49-116 73-130 (325)
8 PF00642 zf-CCCH: Zinc finger 98.5 2.6E-08 5.7E-13 58.5 -0.4 26 89-114 1-26 (27)
9 KOG2333|consensus 98.4 6.4E-08 1.4E-12 90.7 1.4 66 52-119 75-142 (614)
10 smart00356 ZnF_C3H1 zinc finge 98.2 1.2E-06 2.6E-11 50.3 2.1 25 51-76 2-26 (27)
11 KOG1595|consensus 98.0 4.1E-06 8.9E-11 79.0 3.7 67 51-122 199-266 (528)
12 smart00356 ZnF_C3H1 zinc finge 97.9 7.3E-06 1.6E-10 46.9 2.0 25 89-114 2-26 (27)
13 KOG2494|consensus 97.9 4.6E-06 1E-10 74.7 1.0 61 48-115 32-93 (331)
14 KOG1763|consensus 97.7 5E-06 1.1E-10 73.8 -0.9 73 47-120 86-195 (343)
15 KOG1040|consensus 97.5 5E-05 1.1E-09 68.4 2.1 83 9-115 84-182 (325)
16 COG5084 YTH1 Cleavage and poly 97.4 0.0002 4.3E-09 63.5 4.2 60 49-116 100-159 (285)
17 COG5252 Uncharacterized conser 97.3 3.7E-05 8.1E-10 66.7 -1.4 69 48-117 80-177 (299)
18 KOG1492|consensus 97.0 0.00028 6.1E-09 61.4 1.6 48 7-80 212-259 (377)
19 KOG1492|consensus 96.5 0.0017 3.6E-08 56.7 2.3 66 51-118 204-286 (377)
20 COG5084 YTH1 Cleavage and poly 96.4 0.0037 8.1E-08 55.5 4.0 55 52-115 133-189 (285)
21 PF14608 zf-CCCH_2: Zinc finge 95.4 0.0091 2E-07 32.3 1.5 18 55-75 1-18 (19)
22 COG5152 Uncharacterized conser 95.1 0.008 1.7E-07 51.4 0.7 31 50-80 138-168 (259)
23 PF14608 zf-CCCH_2: Zinc finge 94.8 0.022 4.7E-07 30.8 1.7 19 93-114 1-19 (19)
24 KOG2185|consensus 94.7 0.012 2.6E-07 54.7 1.0 30 48-78 135-164 (486)
25 COG5152 Uncharacterized conser 94.0 0.017 3.6E-07 49.4 0.3 30 91-122 141-170 (259)
26 KOG2185|consensus 92.8 0.045 9.7E-07 51.0 1.0 25 90-115 139-163 (486)
27 KOG1813|consensus 91.8 0.051 1.1E-06 48.7 0.2 31 50-80 183-213 (313)
28 KOG4791|consensus 91.4 0.11 2.3E-06 49.6 1.8 54 52-115 31-84 (667)
29 KOG2494|consensus 90.1 0.19 4E-06 45.6 2.1 86 10-116 45-154 (331)
30 KOG4791|consensus 89.9 0.081 1.8E-06 50.4 -0.4 51 54-115 4-54 (667)
31 KOG1039|consensus 89.9 0.12 2.6E-06 47.1 0.7 25 92-117 9-33 (344)
32 KOG1039|consensus 88.6 0.17 3.7E-06 46.2 0.7 24 54-78 9-32 (344)
33 KOG1813|consensus 86.8 0.19 4.1E-06 45.1 -0.1 25 91-115 186-210 (313)
34 KOG2333|consensus 83.1 0.54 1.2E-05 45.1 1.1 50 10-75 87-136 (614)
35 KOG2202|consensus 81.8 0.52 1.1E-05 41.5 0.4 30 50-79 12-41 (260)
36 KOG3702|consensus 80.9 2.4 5.3E-05 41.7 4.6 94 9-116 543-646 (681)
37 KOG1763|consensus 72.3 1.1 2.3E-05 40.6 -0.3 27 88-115 89-115 (343)
38 PF10650 zf-C3H1: Putative zin 72.1 2.5 5.4E-05 24.1 1.3 20 55-75 2-21 (23)
39 KOG2202|consensus 69.2 2.6 5.6E-05 37.2 1.4 32 45-77 144-175 (260)
40 COG5252 Uncharacterized conser 63.6 2 4.3E-05 37.9 -0.4 35 88-125 82-116 (299)
41 KOG3702|consensus 49.3 41 0.00088 33.5 5.8 44 51-116 623-666 (681)
42 KOG0153|consensus 40.4 18 0.00038 33.5 1.8 29 49-78 157-185 (377)
43 KOG0153|consensus 31.1 28 0.0006 32.2 1.5 25 91-116 161-185 (377)
44 PF06373 CART: Cocaine and amp 27.6 30 0.00065 24.9 0.9 31 63-111 37-67 (73)
45 KOG2135|consensus 25.5 34 0.00074 32.9 1.1 36 45-80 204-239 (526)
46 PF10283 zf-CCHH: Zinc-finger 20.5 28 0.00062 20.3 -0.3 7 65-71 3-9 (26)
No 1
>KOG1677|consensus
Probab=99.67 E-value=5.9e-17 Score=142.57 Aligned_cols=103 Identities=39% Similarity=0.770 Sum_probs=79.4
Q ss_pred CCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCC-CCCccccccCcccC----
Q psy10639 7 WRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQY-GERCRFAHSVEELR---- 81 (189)
Q Consensus 7 ~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~-Gd~C~FaH~~~elr---- 81 (189)
+...+-|.++..|.+.+.... ....++. .......+..+||++|++|...|.|+| |++|+|+|+.++++
T Consensus 92 ~~~~~~~~~~s~~~~~~p~~~--~~~~~~~----~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~ 165 (332)
T KOG1677|consen 92 YLRTGVCGYGSSCRYNHPDLR--LRPRPVR----RSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS 165 (332)
T ss_pred ccccCCCCCCCCCCccCcccc--cccCCcc----ccccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc
Confidence 345677777777766533210 0111111 112345788899999999999999999 99999999999999
Q ss_pred --CCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 82 --PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 82 --~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
.+..+++|||++|..|+++|.|+||.+|+|+|..
T Consensus 166 ~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 166 ENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred chhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4456889999999999999999999999999994
No 2
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.24 E-value=5.8e-12 Score=111.37 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=83.0
Q ss_pred CCCCCccccc---cccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCC
Q psy10639 6 NWRHPARFRL---DQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRP 82 (189)
Q Consensus 6 ~~~~~g~c~~---g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~ 82 (189)
.|..-|.|.| |.+||++=.-||-++++. .-....|+|+.|..|++.|.|+||.+|.|+|+.++...
T Consensus 235 ~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-----------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie 303 (351)
T COG5063 235 SFTRKGTCPYWISGVKCQFACRGHGLNELKS-----------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE 303 (351)
T ss_pred ccCcCCCCccccccccccccccccccccccc-----------cccccccccCCccchhhcccCccccccccccCChhhcc
Confidence 4677899999 999998743355444421 23456799999999999999999999999999999877
Q ss_pred Ccccc--ccccccccccccccccCCCCCCCCCCC
Q psy10639 83 PVRHY--RYRTRLCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 83 ~~~~p--~~kt~lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
+..++ .|+..+|+.++..|.|++|.+|.+.|+
T Consensus 304 ~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~d 337 (351)
T COG5063 304 MYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFD 337 (351)
T ss_pred ccccccccccccccccccccCccCCCCchhhccc
Confidence 77777 788999999999999999999999999
No 3
>KOG1595|consensus
Probab=99.24 E-value=1.7e-11 Score=114.64 Aligned_cols=93 Identities=28% Similarity=0.540 Sum_probs=76.8
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCccccccc
Q psy10639 11 ARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYR 90 (189)
Q Consensus 11 g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~k 90 (189)
++|.-++.|+|. | |.++.+|...+.-.|..+.|+.|. +|.|+.||.|.|+|++-|. .....+||
T Consensus 207 ~~shDwteCPf~---H----------pgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfEc--wLHPa~YR 270 (528)
T KOG1595|consen 207 PRSHDWTECPFA---H----------PGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFEC--WLHPARYR 270 (528)
T ss_pred ccCCCcccCCcc---C----------CCcccccCCcccccccCccCcccc-cCCCCCCCccccccceehh--hcCHHHhc
Confidence 467777888875 4 234455656677789999999999 7999999999999999986 44556899
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCcCCCcc
Q psy10639 91 TRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKK 125 (189)
Q Consensus 91 t~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~~~ 125 (189)
|++|+. .|+|++ .-|.|||. .+|++++..
T Consensus 271 T~~CkD---g~~C~R-rvCfFAH~--~eqLR~l~~ 299 (528)
T KOG1595|consen 271 TRKCKD---GGYCPR-RVCFFAHS--PEQLRPLPP 299 (528)
T ss_pred cccccC---CCCCcc-ceEeeecC--hHHhcccCC
Confidence 999995 599999 89999999 899988753
No 4
>KOG1677|consensus
Probab=99.10 E-value=5.3e-11 Score=104.86 Aligned_cols=74 Identities=32% Similarity=0.676 Sum_probs=60.6
Q ss_pred CCCCCccccc-cccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCc
Q psy10639 6 NWRHPARFRL-DQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV 84 (189)
Q Consensus 6 ~~~~~g~c~~-g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~ 84 (189)
.|+++|.|.+ |.+|+|. |+.++++.++ ......++.+|||++|.+|...|.|+||.+|+|+|+..+.+...
T Consensus 137 ~~~~~g~c~y~ge~crfa---h~~~e~r~~~-----~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~ 208 (332)
T KOG1677|consen 137 SFRKSGTCKYRGEQCRFA---HGLEELRLPS-----SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASN 208 (332)
T ss_pred eeecCccccccCchhhhc---CCcccccccc-----cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccc
Confidence 5889999999 9999874 6666776554 11235678999999999999899999999999999999887765
Q ss_pred ccc
Q psy10639 85 RHY 87 (189)
Q Consensus 85 ~~p 87 (189)
.++
T Consensus 209 ~~~ 211 (332)
T KOG1677|consen 209 RHP 211 (332)
T ss_pred cCC
Confidence 544
No 5
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.10 E-value=8.9e-11 Score=103.93 Aligned_cols=72 Identities=39% Similarity=0.809 Sum_probs=65.7
Q ss_pred ccCCCCccc--cccccccCcccCCC---CCCcccc---ccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639 45 LLDPIRYKT--ELCRSLEGYRPCQY---GERCRFA---HSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP 116 (189)
Q Consensus 45 ~~~~~kyKT--~lCr~f~~~G~C~~---Gd~C~Fa---H~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~ 116 (189)
.++...||| +||..|.-.|.|++ |+.|+|+ ||..++........|+|++|..|...|+|+||.+|.|+|+..
T Consensus 220 e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 220 EQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred hccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCCh
Confidence 345667899 99999999999999 9999999 999999877777889999999999999999999999999953
No 6
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.66 E-value=3.4e-09 Score=62.29 Aligned_cols=26 Identities=50% Similarity=1.136 Sum_probs=16.7
Q ss_pred ccccccccccCcccCCCCCCcccccc
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAHS 76 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH~ 76 (189)
||+++|++|+..|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 56777777776677777777777775
No 7
>KOG1040|consensus
Probab=98.46 E-value=6.6e-08 Score=86.78 Aligned_cols=58 Identities=26% Similarity=0.655 Sum_probs=47.1
Q ss_pred CCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639 49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP 116 (189)
Q Consensus 49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~ 116 (189)
...++++|++|+ .|.|+.||.|.|+|.. ++ -+...|.+|...|.|.+|..|.|.|..+
T Consensus 73 ~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~--------~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 73 DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DL--------TKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred ccCCceeehhhh-hhhhhccCcCcchhhh-hh--------cccccccccccccccccccCCcccCCCh
Confidence 478899999999 9999999999999988 44 2455677777777777777777777754
No 8
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.46 E-value=2.6e-08 Score=58.49 Aligned_cols=26 Identities=42% Similarity=1.175 Sum_probs=21.6
Q ss_pred cccccccccccccccCCCCCCCCCCC
Q psy10639 89 YRTRLCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 89 ~kt~lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
|++++|++|.+.|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 57899999999999999999999997
No 9
>KOG2333|consensus
Probab=98.43 E-value=6.4e-08 Score=90.68 Aligned_cols=66 Identities=29% Similarity=0.617 Sum_probs=54.5
Q ss_pred cccccccccCc--ccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCCC
Q psy10639 52 KTELCRSLEGY--RPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEE 119 (189)
Q Consensus 52 KT~lCr~f~~~--G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee 119 (189)
+..||...... -.|.|||+|+|.||++.+ +..++.+...-|..|.+.|.|+||..|||+-.+..++
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ay--LatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~ 142 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAY--LATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIE 142 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHH--HhccCcccCCccceeeccccCCccceeehhhcccCcc
Confidence 57899999854 489999999999999987 3344556778899999999999999999996653433
No 10
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.17 E-value=1.2e-06 Score=50.26 Aligned_cols=25 Identities=56% Similarity=1.206 Sum_probs=17.1
Q ss_pred ccccccccccCcccCCCCCCcccccc
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAHS 76 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH~ 76 (189)
+|+.+|++| ..|.|.+|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 466677777 3677777777777775
No 11
>KOG1595|consensus
Probab=98.01 E-value=4.1e-06 Score=79.01 Aligned_cols=67 Identities=27% Similarity=0.588 Sum_probs=56.4
Q ss_pred ccccccccccCcccCCCCCCccccc-cCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCCCcCC
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAH-SVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDP 122 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH-~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~ 122 (189)
||++.|.. +.|.-+-.|.|+| +..+.|.-+++-.|..++|+.| .+|.|..|+.|.|+|++-+-.+=|
T Consensus 199 fKir~C~R----~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgvfEcwLHP 266 (528)
T KOG1595|consen 199 FKIRRCSR----PRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGVFECWLHP 266 (528)
T ss_pred eeecccCC----ccCCCcccCCccCCCcccccCCcccccccCccCccc-ccCCCCCCCccccccceehhhcCH
Confidence 78888874 4699999999999 8778777777778999999999 479999999999999985544433
No 12
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.90 E-value=7.3e-06 Score=46.91 Aligned_cols=25 Identities=48% Similarity=1.233 Sum_probs=22.9
Q ss_pred cccccccccccccccCCCCCCCCCCC
Q psy10639 89 YRTRLCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 89 ~kt~lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
+++.+|++| ..|.|.+|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 577899999 7999999999999997
No 13
>KOG2494|consensus
Probab=97.85 E-value=4.6e-06 Score=74.68 Aligned_cols=61 Identities=26% Similarity=0.609 Sum_probs=48.2
Q ss_pred CCCccccccccccCcccCCCCCC-ccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 48 PIRYKTELCRSLEGYRPCQYGER-CRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 48 ~~kyKT~lCr~f~~~G~C~~Gd~-C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
..+..-++||.|+ .|.|.+||+ |+|+|.....- ...-+..-|..|. .|.|.+ ++|+|+|..
T Consensus 32 ~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~----V~~g~v~aC~Ds~-kgrCsR-~nCkylHpp 93 (331)
T KOG2494|consen 32 TKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQ----VSNGRVIACFDSQ-KGRCSR-ENCKYLHPP 93 (331)
T ss_pred cchhHHHHHHHHH-hccccCCCccccccCCCCCCC----ccCCeEEEEeccc-cCccCc-ccceecCCC
Confidence 4456679999999 999999999 99999776431 1123456799995 999998 569999995
No 14
>KOG1763|consensus
Probab=97.73 E-value=5e-06 Score=73.82 Aligned_cols=73 Identities=23% Similarity=0.580 Sum_probs=53.2
Q ss_pred CCCCccccccccccCcccCCCCCCccccccCcccCCCcc------------------------c--cccc-ccccccccc
Q psy10639 47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVR------------------------H--YRYR-TRLCRNYHH 99 (189)
Q Consensus 47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~------------------------~--p~~k-t~lCk~f~~ 99 (189)
.....|+++|-+|. .|.|..|+.|.|+|+....+.... + +... -.+|++|.-
T Consensus 86 ~gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe 164 (343)
T KOG1763|consen 86 KGVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE 164 (343)
T ss_pred cCCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 34557999999998 899999999999999876543221 1 1111 148999873
Q ss_pred ------cc---ccCCCC-CCCCCCCCCCCCc
Q psy10639 100 ------NG---VCNYGT-RCSFIHRVPGEEV 120 (189)
Q Consensus 100 ------~G---~C~~G~-~CrFaH~~~~ee~ 120 (189)
.| .||+|. .|.|.|..|..-+
T Consensus 165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~GyV 195 (343)
T KOG1763|consen 165 AVENGKYGWFWECPNGGDKCIYRHALPEGYV 195 (343)
T ss_pred HHhcCCccceeECCCCCCeeeeeecCCcchh
Confidence 34 499985 8999999876543
No 15
>KOG1040|consensus
Probab=97.49 E-value=5e-05 Score=68.38 Aligned_cols=83 Identities=19% Similarity=0.454 Sum_probs=54.0
Q ss_pred CCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcc--cCCCc--
Q psy10639 9 HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE--LRPPV-- 84 (189)
Q Consensus 9 ~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e--lr~~~-- 84 (189)
..|.|+.|++|.|.+.. ...|-+.|.+|...|.|..|+.|.|.|+.-+ ....+
T Consensus 84 l~glC~kgD~C~Flhe~-----------------------~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~ 140 (325)
T KOG1040|consen 84 LRGLCKKGDQCEFLHEY-----------------------DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWY 140 (325)
T ss_pred hhhhhhccCcCcchhhh-----------------------hhcccccccccccccccccccCCcccCCChhhhhhccchh
Confidence 35778888888876331 2345567777777888888888888887621 11000
Q ss_pred -----------cccccccccccccccccccCCCCC-CCCCCCC
Q psy10639 85 -----------RHYRYRTRLCRNYHHNGVCNYGTR-CSFIHRV 115 (189)
Q Consensus 85 -----------~~p~~kt~lCk~f~~~G~C~~G~~-CrFaH~~ 115 (189)
.....+..+|..|. .|.|+-|.+ |-+.|..
T Consensus 141 ~~g~c~~g~~c~~~h~~~~~c~~y~-~gfC~~g~q~c~~~hp~ 182 (325)
T KOG1040|consen 141 KEGFCRGGPSCKKRHERKVLCPPYN-AGFCPKGPQRCDMLHPE 182 (325)
T ss_pred hhccCCCcchhhhhhhcccCCCchh-hhhccCCCCcccccCCC
Confidence 01112336788885 889999877 9998883
No 16
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.36 E-value=0.0002 Score=63.48 Aligned_cols=60 Identities=23% Similarity=0.581 Sum_probs=51.1
Q ss_pred CCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639 49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP 116 (189)
Q Consensus 49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~ 116 (189)
..+..++|++|. .|.|+.|..|.|+|+.+-.+. -+..|+.|...|.|..|..|.+.|.++
T Consensus 100 ~~~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s-------~~~~c~~Fs~~G~cs~g~~c~~~h~dp 159 (285)
T COG5084 100 VLSSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSS-------QGPPCRSFSLKGSCSSGPSCGYSHIDP 159 (285)
T ss_pred cccCCcccchhc-cccCcCCCccccccCCCcccc-------cCCCcccccccceeccCCCCCccccCc
Confidence 358899999998 999999999999999886532 256799998899999999999999863
No 17
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.27 E-value=3.7e-05 Score=66.73 Aligned_cols=69 Identities=33% Similarity=0.748 Sum_probs=52.5
Q ss_pred CCCccccccccccCcccCCCCCCccccccCcccCCCccc-------------cc----c--cccccccccc------cc-
Q psy10639 48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRH-------------YR----Y--RTRLCRNYHH------NG- 101 (189)
Q Consensus 48 ~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~-------------p~----~--kt~lCk~f~~------~G- 101 (189)
....|+++|-.|. .+.|..|+.|+|+|+.++.|..... +- + ..++|++|.- .|
T Consensus 80 gvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw 158 (299)
T COG5252 80 GVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW 158 (299)
T ss_pred ccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence 3457999999999 8999999999999998876654321 10 1 2368998863 22
Q ss_pred --ccCCC-CCCCCCCCCCC
Q psy10639 102 --VCNYG-TRCSFIHRVPG 117 (189)
Q Consensus 102 --~C~~G-~~CrFaH~~~~ 117 (189)
.||+| .+|.|.|..|.
T Consensus 159 ~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 159 GWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeeCCCCCceeeeeeccCc
Confidence 59998 68999999876
No 18
>KOG1492|consensus
Probab=97.02 E-value=0.00028 Score=61.39 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=28.9
Q ss_pred CCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639 7 WRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 7 ~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
++..|-|-.|..|-|.|. | .+..+|+.|. .|.|...+.|+..|..+..
T Consensus 212 ynangicgkgaacrfvhe---------p----------------trkticpkfl-ngrcnkaedcnlsheldpr 259 (377)
T KOG1492|consen 212 YNANGICGKGAACRFVHE---------P----------------TRKTICPKFL-NGRCNKAEDCNLSHELDPR 259 (377)
T ss_pred ecCCCcccCCceeeeecc---------c----------------cccccChHHh-cCccCchhcCCcccccCcc
Confidence 345677777888866522 1 1234566666 6666666666666666544
No 19
>KOG1492|consensus
Probab=96.48 E-value=0.0017 Score=56.66 Aligned_cols=66 Identities=27% Similarity=0.494 Sum_probs=47.2
Q ss_pred ccccccccccCcccCCCCCCccccccCcccCCCc---------------ccc--ccccccccccccccccCCCCCCCCCC
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV---------------RHY--RYRTRLCRNYHHNGVCNYGTRCSFIH 113 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~---------------~~p--~~kt~lCk~f~~~G~C~~G~~CrFaH 113 (189)
.....|++|...|.|-.|..|+|.|.+.....-+ .+. ..+...|++|. .|.|.+ .+|||.|
T Consensus 204 psavycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfl-lgkcnn-pncryvh 281 (377)
T KOG1492|consen 204 PSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNN-PNCRYVH 281 (377)
T ss_pred CceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhh-hccCCC-CCceEEE
Confidence 3567899999999999999999999765321111 011 22456799885 899965 8999998
Q ss_pred CCCCC
Q psy10639 114 RVPGE 118 (189)
Q Consensus 114 ~~~~e 118 (189)
-.-.|
T Consensus 282 ihyse 286 (377)
T KOG1492|consen 282 IHYSE 286 (377)
T ss_pred EeecC
Confidence 75443
No 20
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.38 E-value=0.0037 Score=55.50 Aligned_cols=55 Identities=27% Similarity=0.630 Sum_probs=44.7
Q ss_pred cccccccccCcccCCCCCCccccccCcccCCCcccccccccccccccc--ccccCCCCCCCCCCCC
Q psy10639 52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHH--NGVCNYGTRCSFIHRV 115 (189)
Q Consensus 52 KT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~--~G~C~~G~~CrFaH~~ 115 (189)
....|++|...|.|..|..|.|.|..-. -....|..|.. .+.|++|..|+|-|..
T Consensus 133 ~~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~ 189 (285)
T COG5084 133 QGPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFCPLGASCKFSHTL 189 (285)
T ss_pred cCCCcccccccceeccCCCCCccccCcc---------cccccccccCcccccccCCCCcccccccc
Confidence 4778999977999999999999997521 23456776653 8999999999999993
No 21
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.44 E-value=0.0091 Score=32.29 Aligned_cols=18 Identities=33% Similarity=0.874 Sum_probs=10.8
Q ss_pred ccccccCcccCCCCCCccccc
Q psy10639 55 LCRSLEGYRPCQYGERCRFAH 75 (189)
Q Consensus 55 lCr~f~~~G~C~~Gd~C~FaH 75 (189)
+|++|. . |++|++|.|+|
T Consensus 1 ~Ck~~~-~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGP-N--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcC-C--CCCCCcCccCC
Confidence 366554 1 66666666666
No 22
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.05 E-value=0.008 Score=51.35 Aligned_cols=31 Identities=23% Similarity=0.750 Sum_probs=27.5
Q ss_pred CccccccccccCcccCCCCCCccccccCccc
Q psy10639 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
.+...+|+.|..+|.|-|||.|.|.|+.+++
T Consensus 138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred ecCcccccchhhcccccCCchhhhhhhhhhh
Confidence 3667899999999999999999999998864
No 23
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.78 E-value=0.022 Score=30.80 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=15.7
Q ss_pred cccccccccccCCCCCCCCCCC
Q psy10639 93 LCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 93 lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
+|+++. .|.+|+.|.|+|.
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 488664 4999999999995
No 24
>KOG2185|consensus
Probab=94.74 E-value=0.012 Score=54.70 Aligned_cols=30 Identities=30% Similarity=0.812 Sum_probs=25.8
Q ss_pred CCCccccccccccCcccCCCCCCccccccCc
Q psy10639 48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVE 78 (189)
Q Consensus 48 ~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~ 78 (189)
+....-.+|++|+ .|.|+||++|+|.||..
T Consensus 135 PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 135 PTHESMKPCKFFL-EGRCRFGENCRFSHGLD 164 (486)
T ss_pred CcchhhccchHhh-ccccccCcccccccCcc
Confidence 4444568999999 99999999999999875
No 25
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.03 E-value=0.017 Score=49.44 Aligned_cols=30 Identities=30% Similarity=0.984 Sum_probs=25.2
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCcCC
Q psy10639 91 TRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDP 122 (189)
Q Consensus 91 t~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~ 122 (189)
..+|+.|-.+|+|-||+.|.|+|. .++...
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~--R~D~Kt 170 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHD--RSDFKT 170 (259)
T ss_pred cccccchhhcccccCCchhhhhhh--hhhhhc
Confidence 357999999999999999999999 554433
No 26
>KOG2185|consensus
Probab=92.78 E-value=0.045 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.885 Sum_probs=22.5
Q ss_pred ccccccccccccccCCCCCCCCCCCC
Q psy10639 90 RTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 90 kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
...+|++|+ .|.|+||.+|||.|+.
T Consensus 139 sMkpC~ffL-eg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFL-EGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhh-ccccccCcccccccCc
Confidence 357999996 9999999999999996
No 27
>KOG1813|consensus
Probab=91.83 E-value=0.051 Score=48.67 Aligned_cols=31 Identities=26% Similarity=0.844 Sum_probs=28.5
Q ss_pred CccccccccccCcccCCCCCCccccccCccc
Q psy10639 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
.|...+|+.|..+|.|-||+.|.|.|+..++
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 4778999999999999999999999999876
No 28
>KOG4791|consensus
Probab=91.37 E-value=0.11 Score=49.60 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=39.3
Q ss_pred cccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 52 KT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
....|++|+..-.|+. .|.|.|..-.+. ....+|.++.+...|.. ++|-|-|..
T Consensus 31 n~t~C~~w~~~~~C~k--~C~YRHSe~~~k-------r~e~~CYwe~~p~gC~k-~~CgfRH~~ 84 (667)
T KOG4791|consen 31 NETVCTLWQEGRCCRK--VCRYRHSEIDKK-------RSEIPCYWENQPTGCQK-LNCGFRHNR 84 (667)
T ss_pred CcchhhhhhhcCcccc--cccchhhHHhhh-------cCcccceeecCCCccCC-CccccccCC
Confidence 4568999996666766 799999765542 23568986654444986 999999963
No 29
>KOG2494|consensus
Probab=90.12 E-value=0.19 Score=45.59 Aligned_cols=86 Identities=21% Similarity=0.460 Sum_probs=55.0
Q ss_pred Ccccccccc-chhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCc----
Q psy10639 10 PARFRLDQK-CQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV---- 84 (189)
Q Consensus 10 ~g~c~~g~~-C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~---- 84 (189)
.+-|+.|+. |.|. |.+ .. ..-.+-+...|..++ +|.|.+ |+|+|+|...+++.-.
T Consensus 45 rn~C~R~d~~Ckfa---HP~--~~-------------~~V~~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkdql~ing 104 (331)
T KOG2494|consen 45 RNTCSRGDRECKFA---HPP--KN-------------CQVSNGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKDQLKING 104 (331)
T ss_pred hccccCCCcccccc---CCC--CC-------------CCccCCeEEEEeccc-cCccCc-ccceecCCChhhhhhhhhcc
Confidence 467888888 9764 422 11 122234568999999 899988 6699999988765311
Q ss_pred c---------------cccc-cccccc--ccccccccCCC-CCCCCCCCCC
Q psy10639 85 R---------------HYRY-RTRLCR--NYHHNGVCNYG-TRCSFIHRVP 116 (189)
Q Consensus 85 ~---------------~p~~-kt~lCk--~f~~~G~C~~G-~~CrFaH~~~ 116 (189)
+ .... .+.+|+ .| ..+-|.-| ..|+|.+-.+
T Consensus 105 rn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f-~~~~~~~g~~~~s~~~y~~ 154 (331)
T KOG2494|consen 105 RNNLILQKTAAAMLAQQMQGPGTPICSVPMF-ATGPCLGGNTACSYWPYLP 154 (331)
T ss_pred cccHHHHHHHHhhhcccccCCCccccccccc-cccccccCCCccccccccC
Confidence 0 0112 456777 44 46667766 4588887754
No 30
>KOG4791|consensus
Probab=89.93 E-value=0.081 Score=50.38 Aligned_cols=51 Identities=25% Similarity=0.643 Sum_probs=40.2
Q ss_pred cccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 54 ELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 54 ~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
.-|.+|+ .-.|++++.|.|.|....+.. ...|.+|...--|. ..|+|-|..
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n--------~t~C~~w~~~~~C~--k~C~YRHSe 54 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALGN--------ETVCTLWQEGRCCR--KVCRYRHSE 54 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhcC--------cchhhhhhhcCccc--ccccchhhH
Confidence 4577787 789999999999998887632 35799998664455 399999995
No 31
>KOG1039|consensus
Probab=89.91 E-value=0.12 Score=47.12 Aligned_cols=25 Identities=32% Similarity=1.042 Sum_probs=20.2
Q ss_pred ccccccccccccCCCCCCCCCCCCCC
Q psy10639 92 RLCRNYHHNGVCNYGTRCSFIHRVPG 117 (189)
Q Consensus 92 ~lCk~f~~~G~C~~G~~CrFaH~~~~ 117 (189)
.+|++| ..|+|.||+.|||.|..+.
T Consensus 9 tic~~~-~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYY-QKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhc-ccccccccceeeeeccCch
Confidence 688876 4888888888888888774
No 32
>KOG1039|consensus
Probab=88.59 E-value=0.17 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.926 Sum_probs=22.7
Q ss_pred cccccccCcccCCCCCCccccccCc
Q psy10639 54 ELCRSLEGYRPCQYGERCRFAHSVE 78 (189)
Q Consensus 54 ~lCr~f~~~G~C~~Gd~C~FaH~~~ 78 (189)
.+|++|+ .|.|+||+.|+|.|..-
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 8999999 99999999999999876
No 33
>KOG1813|consensus
Probab=86.75 E-value=0.19 Score=45.11 Aligned_cols=25 Identities=36% Similarity=1.132 Sum_probs=22.9
Q ss_pred cccccccccccccCCCCCCCCCCCC
Q psy10639 91 TRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 91 t~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
.-+|+.|-.+|+|-||+.|.|+|..
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhh
Confidence 4589999999999999999999994
No 34
>KOG2333|consensus
Probab=83.14 E-value=0.54 Score=45.14 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=34.9
Q ss_pred CccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccc
Q psy10639 10 PARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAH 75 (189)
Q Consensus 10 ~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH 75 (189)
...|.+|.+|-|.|-+... +......-..-|..|...|.|+||-+|+|+-
T Consensus 87 ~~~C~f~d~Crf~HDi~ay----------------LatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 87 ISKCSFGDNCRFVHDIEAY----------------LATKAPDIGPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred CccCcccccccccccHHHH----------------HhccCcccCCccceeeccccCCccceeehhh
Confidence 3689999999887433211 1111112236799999999999999999974
No 35
>KOG2202|consensus
Probab=81.79 E-value=0.52 Score=41.47 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=23.5
Q ss_pred CccccccccccCcccCCCCCCccccccCcc
Q psy10639 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEE 79 (189)
Q Consensus 50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e 79 (189)
..-.+-|.+|.+.|.|++|+.|.=.|...+
T Consensus 12 ekdKv~c~fy~k~gacR~gdrcsR~h~kpt 41 (260)
T KOG2202|consen 12 EKDKVNCSFYFKIGACRHGDRCSRLHEKPT 41 (260)
T ss_pred cccccccchHHhhcccccccHHHHhhcccc
Confidence 344578999999999999999977775443
No 36
>KOG3702|consensus
Probab=80.89 E-value=2.4 Score=41.74 Aligned_cols=94 Identities=16% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCccccccccchhhhhcCCCCCCCCCCCCCcc-c---cccccCCCCccccccccccCcccCCCCCCccccccCccc----
Q psy10639 9 HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQE-S---DRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL---- 80 (189)
Q Consensus 9 ~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~-s---~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el---- 80 (189)
..-+|+|+..|...++. ...|+.+..- + .. -.....+-.+.|++= ..|.. ..|.|.|+..-.
T Consensus 543 ~l~~Cky~~~Ct~a~Ce-----~~HPtaa~~~~s~p~k~-fa~~~~ks~p~Ck~~---~kCta-sDC~~sH~~~~~pvq~ 612 (681)
T KOG3702|consen 543 ILTRCKYGPACTSAECE-----FAHPTAAENAKSLPNKK-FASKCLKSHPGCKFG---KKCTA-SDCNYSHAGRRIPVQP 612 (681)
T ss_pred eeccccCCCcCCchhhh-----hcCCcchhhhhcccccc-ccccceecccccccc---ccccc-ccCcccccCCCCCCcc
Confidence 34579999999765542 2334333110 0 00 011222333444422 23444 348899987653
Q ss_pred CCCcc-cc-ccccccccccccccccCCCCCCCCCCCCC
Q psy10639 81 RPPVR-HY-RYRTRLCRNYHHNGVCNYGTRCSFIHRVP 116 (189)
Q Consensus 81 r~~~~-~p-~~kt~lCk~f~~~G~C~~G~~CrFaH~~~ 116 (189)
..++. .+ .....+|+|+ +.|.+ ..|+|.|...
T Consensus 613 t~ip~~~~~~ti~~~CrY~---pnCrn-m~C~F~HPk~ 646 (681)
T KOG3702|consen 613 TRIPPPFPGGTIRGLCRYR---PNCRN-MQCKFYHPKT 646 (681)
T ss_pred ccCCCCCCCCCccccceec---cCcCC-ccccccCCcc
Confidence 11111 11 2245677753 56765 6788888843
No 37
>KOG1763|consensus
Probab=72.29 E-value=1.1 Score=40.55 Aligned_cols=27 Identities=26% Similarity=0.801 Sum_probs=23.8
Q ss_pred ccccccccccccccccCCCCCCCCCCCC
Q psy10639 88 RYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 88 ~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
..|+.+|-+| ..|.|.-|+.|.|+|+.
T Consensus 89 DPKSvvCafF-k~g~C~KG~kCKFsHdl 115 (343)
T KOG1763|consen 89 DPKSVVCAFF-KQGTCTKGDKCKFSHDL 115 (343)
T ss_pred CchHHHHHHH-hccCCCCCCcccccchH
Confidence 3478899988 58999999999999995
No 38
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=72.11 E-value=2.5 Score=24.10 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=9.4
Q ss_pred ccccccCcccCCCCCCccccc
Q psy10639 55 LCRSLEGYRPCQYGERCRFAH 75 (189)
Q Consensus 55 lCr~f~~~G~C~~Gd~C~FaH 75 (189)
||.+-...|.|.- +.|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 4555543335533 3355555
No 39
>KOG2202|consensus
Probab=69.20 E-value=2.6 Score=37.17 Aligned_cols=32 Identities=25% Similarity=0.618 Sum_probs=22.5
Q ss_pred ccCCCCccccccccccCcccCCCCCCccccccC
Q psy10639 45 LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSV 77 (189)
Q Consensus 45 ~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~ 77 (189)
.+.-...+..+|..|. .+.|.+|..|+|.|-.
T Consensus 144 ~~pvT~~rea~C~~~e-~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 144 LSPVTDFREAICGQFE-RTECSRGGACNFMHVK 175 (260)
T ss_pred ecCcCchhhhhhcccc-cccCCCCCcCcchhhh
Confidence 3445566777787777 5578888888888855
No 40
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=63.63 E-value=2 Score=37.87 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=27.9
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCcCCCcc
Q psy10639 88 RYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKK 125 (189)
Q Consensus 88 ~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~~~ 125 (189)
..|+.+|-.|. .+.|..|+.|.|+|+ -+|.+..-+
T Consensus 82 dpK~~vcalF~-~~~c~kg~~ckF~h~--~ee~r~~eK 116 (299)
T COG5252 82 DPKTVVCALFL-NKTCAKGDACKFAHG--KEEARKTEK 116 (299)
T ss_pred CchhHHHHHhc-cCccccCchhhhhcc--hHHHhhhcc
Confidence 35788999995 999999999999999 555555433
No 41
>KOG3702|consensus
Probab=49.35 E-value=41 Score=33.53 Aligned_cols=44 Identities=34% Similarity=0.739 Sum_probs=30.7
Q ss_pred ccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCC
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVP 116 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~ 116 (189)
.-+.+|+|+- .|+. -.|.|.|.. .|++ ..+|++-..|-|.|..+
T Consensus 623 ti~~~CrY~p---nCrn-m~C~F~HPk---------------~cRf---~~~c~~~~sc~fYh~r~ 666 (681)
T KOG3702|consen 623 TIRGLCRYRP---NCRN-MQCKFYHPK---------------TCRF---NTNCPNNPSCTFYHERP 666 (681)
T ss_pred Cccccceecc---CcCC-ccccccCCc---------------cccc---cccCCCCcccccccCCc
Confidence 3467777663 4655 458899953 4663 56899889999999943
No 42
>KOG0153|consensus
Probab=40.38 E-value=18 Score=33.50 Aligned_cols=29 Identities=21% Similarity=0.569 Sum_probs=24.4
Q ss_pred CCccccccccccCcccCCCCCCccccccCc
Q psy10639 49 IRYKTELCRSLEGYRPCQYGERCRFAHSVE 78 (189)
Q Consensus 49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~ 78 (189)
.+....+|-+|. .|.|+.|+.|.|.|..-
T Consensus 157 krn~p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 157 KRNRPHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred cCCCCcccccee-eccccccccccccccCC
Confidence 344568999999 88999999999999664
No 43
>KOG0153|consensus
Probab=31.05 E-value=28 Score=32.25 Aligned_cols=25 Identities=28% Similarity=0.870 Sum_probs=21.9
Q ss_pred cccccccccccccCCCCCCCCCCCCC
Q psy10639 91 TRLCRNYHHNGVCNYGTRCSFIHRVP 116 (189)
Q Consensus 91 t~lCk~f~~~G~C~~G~~CrFaH~~~ 116 (189)
..+|.+|. .|.|.+|..|.|-|..+
T Consensus 161 p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred Ccccccee-eccccccccccccccCC
Confidence 35799885 78999999999999987
No 44
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=27.56 E-value=30 Score=24.94 Aligned_cols=31 Identities=35% Similarity=0.875 Sum_probs=14.7
Q ss_pred ccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCC
Q psy10639 63 RPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSF 111 (189)
Q Consensus 63 G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrF 111 (189)
-.|..|+.|-..|+.. +.++| .|+.|..|.|
T Consensus 37 P~Cd~GE~CAvrkG~R-----------IGklC-------dC~rG~~CN~ 67 (73)
T PF06373_consen 37 PSCDVGEQCAVRKGPR-----------IGKLC-------DCPRGTSCNF 67 (73)
T ss_dssp -B--SSS-SEEE-SSS-----------EEE---------B--TT--B-T
T ss_pred CCCCCCchhhhccccc-----------ccccc-------CCCCCCchhh
Confidence 3799999999999874 45566 5888888875
No 45
>KOG2135|consensus
Probab=25.49 E-value=34 Score=32.92 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=29.6
Q ss_pred ccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639 45 LLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 45 ~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
.....++....|+.|...|.|..|+.|.+.|+...+
T Consensus 204 gp~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 204 GPEKSRNSENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred CcccccccHHhhhhhHhhceeeecccccccccccee
Confidence 344556777899999999999999999999988753
No 46
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=20.45 E-value=28 Score=20.31 Aligned_cols=7 Identities=57% Similarity=1.977 Sum_probs=2.8
Q ss_pred CCCCCCc
Q psy10639 65 CQYGERC 71 (189)
Q Consensus 65 C~~Gd~C 71 (189)
|+||.+|
T Consensus 3 C~YG~~C 9 (26)
T PF10283_consen 3 CKYGAKC 9 (26)
T ss_dssp -TTGGG-
T ss_pred CCcchhh
Confidence 5555555
Done!