Query psy10639
Match_columns 189
No_of_seqs 154 out of 1225
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.8 3.8E-21 1.3E-25 136.0 3.4 70 46-115 5-74 (77)
2 2d9n_A Cleavage and polyadenyl 99.4 4.6E-14 1.6E-18 100.6 4.0 62 47-119 4-65 (77)
3 2cqe_A KIAA1064 protein; CCCH 99.4 4.2E-14 1.4E-18 105.4 3.5 54 49-117 9-62 (98)
4 2rhk_C Cleavage and polyadenyl 99.3 2.2E-13 7.6E-18 96.2 2.1 61 47-118 10-70 (72)
5 3d2q_A Muscleblind-like protei 99.1 1.6E-11 5.3E-16 86.0 2.4 59 51-114 4-63 (70)
6 1m9o_A Tristetraproline; Cys3H 99.1 2.5E-11 8.4E-16 85.3 0.9 60 6-79 17-76 (77)
7 2e5s_A Otthump00000018578; ZF- 99.0 6.1E-11 2.1E-15 88.4 -0.0 62 49-115 16-78 (98)
8 3d2n_A Muscleblind-like protei 98.8 1.8E-09 6E-14 78.3 2.8 62 47-115 3-65 (83)
9 2d9m_A Zinc finger CCCH-type d 98.7 6.2E-10 2.1E-14 78.3 -1.6 47 50-97 17-64 (69)
10 2rpp_A Muscleblind-like protei 98.6 1.5E-08 5E-13 74.4 2.6 62 47-115 11-73 (89)
11 2d9n_A Cleavage and polyadenyl 98.4 1.1E-07 3.7E-12 67.4 2.2 55 11-98 19-73 (77)
12 2d9m_A Zinc finger CCCH-type d 98.1 1.7E-07 5.7E-12 65.8 -1.2 34 87-123 16-49 (69)
13 2cqe_A KIAA1064 protein; CCCH 98.1 8.2E-07 2.8E-11 65.8 1.9 42 9-78 20-61 (98)
14 3d2q_A Muscleblind-like protei 97.8 5.3E-06 1.8E-10 57.6 1.7 55 9-81 13-68 (70)
15 2rhk_C Cleavage and polyadenyl 97.7 9E-06 3.1E-10 56.9 0.7 49 7-80 22-70 (72)
16 2e5s_A Otthump00000018578; ZF- 97.3 4.9E-05 1.7E-09 56.2 1.2 52 11-80 29-81 (98)
17 2fc6_A Nuclear, target of EGR1 97.2 5.7E-05 1.9E-09 49.7 0.5 27 89-115 18-44 (50)
18 2fc6_A Nuclear, target of EGR1 97.1 9.7E-05 3.3E-09 48.6 0.5 29 51-79 18-46 (50)
19 3d2n_A Muscleblind-like protei 96.5 0.00045 1.6E-08 49.6 0.2 53 7-80 15-68 (83)
20 3u9g_A Zinc finger CCCH-type a 96.0 0.0021 7.3E-08 54.2 1.8 27 52-79 88-118 (229)
21 3u9g_A Zinc finger CCCH-type a 95.6 0.0064 2.2E-07 51.2 3.0 51 46-115 144-197 (229)
22 2rpp_A Muscleblind-like protei 95.2 0.0056 1.9E-07 44.5 1.2 50 11-80 26-76 (89)
23 2lhn_A Nuclear polyadenylated 91.3 0.028 9.6E-07 40.1 0.0 22 52-77 8-29 (80)
24 3u1l_A PRE-mRNA-splicing facto 91.6 0.023 7.9E-07 47.8 -1.0 28 91-119 70-97 (240)
25 3u1l_A PRE-mRNA-splicing facto 91.6 0.037 1.3E-06 46.5 0.2 25 52-77 69-93 (240)
26 2lhn_A Nuclear polyadenylated 83.1 0.26 8.9E-06 35.1 0.0 41 53-114 31-71 (80)
27 3v33_A Ribonuclease ZC3H12A; r 68.3 1.2 4.2E-05 37.1 0.5 22 90-114 191-212 (223)
28 3v33_A Ribonuclease ZC3H12A; r 51.4 3.1 0.00011 34.7 0.0 25 51-78 190-214 (223)
29 2kqb_A Aprataxin and PNK-like 47.2 8.5 0.00029 27.8 1.7 16 100-115 56-71 (89)
30 2kuo_A Aprataxin and PNK-like 34.0 11 0.00037 27.3 0.6 13 100-112 61-73 (91)
31 1hy9_A Cocaine and amphetamine 33.3 27 0.00091 21.6 2.2 31 64-112 6-36 (41)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.82 E-value=3.8e-21 Score=136.03 Aligned_cols=70 Identities=47% Similarity=1.019 Sum_probs=35.7
Q ss_pred cCCCCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 46 LDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 46 ~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
+.+.+|||+||++|+..|.|++|++|+|+|+.++++....++.+++.+|+.|.+.|.|++|++|+|+|+.
T Consensus 5 ~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------
T ss_pred CCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 4567899999999987999999999999999999988777888999999999999999999999999994
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.6e-14 Score=100.57 Aligned_cols=62 Identities=26% Similarity=0.584 Sum_probs=52.6
Q ss_pred CCCCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCCC
Q psy10639 47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEE 119 (189)
Q Consensus 47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee 119 (189)
....+|+++|++|+ .|.|++|++|.|+|+.... ++.+|++|++.|.|. |++|+|+|..+...
T Consensus 4 ~~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 4 GSSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp CCSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CCCCCcceeCHhHc-cCcCCCCCCCCCccccccC---------cCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 44568999999999 6999999999999998753 456899998669999 89999999965443
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.43 E-value=4.2e-14 Score=105.38 Aligned_cols=54 Identities=31% Similarity=0.625 Sum_probs=48.7
Q ss_pred CCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCC
Q psy10639 49 IRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPG 117 (189)
Q Consensus 49 ~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ 117 (189)
..+|+++|++|+ .|.|++|++|+|+|+ +.+|++|++.|.|++|++|+|+|....
T Consensus 9 ~~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 9 LPKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CSCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 458999999997 899999999999998 458999988999999999999999543
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.34 E-value=2.2e-13 Score=96.23 Aligned_cols=61 Identities=26% Similarity=0.568 Sum_probs=51.5
Q ss_pred CCCCccccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCCCCC
Q psy10639 47 DPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGE 118 (189)
Q Consensus 47 ~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~e 118 (189)
+....++++|++|+ .|.|++|++|.|+|+.+.. ++.+|++|+..|.|.+ ++|+|.|..+..
T Consensus 10 ~~~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 10 HMSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp SSSCCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCCCCcCeeCHHHh-cCCCCCCCCCCCccccccc---------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 44568899999999 6999999999999997643 4678999986699999 999999996543
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.13 E-value=1.6e-11 Score=85.98 Aligned_cols=59 Identities=29% Similarity=0.701 Sum_probs=49.3
Q ss_pred ccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCC
Q psy10639 51 YKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
.|.++|++|+ .|.|.+|+ .|.|+|+.++... .....++.+|++|. .|.|.+| .|+|+|.
T Consensus 4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~--~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTMI--DTNDNTVTVCMDYI-KGRCSRE-KCKYFHP 63 (70)
T ss_dssp CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCC--BTTTTEEEBCHHHH-TTCCCCT-TCCSBCC
T ss_pred ccchhCHHHh-cCCCCCCCCCCCCccCcccccc--cccCCcceeccccC-cCCCCCC-CcCeeCC
Confidence 5778999998 89999999 5999999876522 22235788999997 6999999 9999998
No 6
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.06 E-value=2.5e-11 Score=85.29 Aligned_cols=60 Identities=33% Similarity=0.682 Sum_probs=18.2
Q ss_pred CCCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcc
Q psy10639 6 NWRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE 79 (189)
Q Consensus 6 ~~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~e 79 (189)
.|...|.|.+|.+|+|. |+..+++.+ ....++||++|++|...|.|++|++|+|+|+..|
T Consensus 17 ~f~~~G~C~~G~~C~f~---H~~~e~~~~-----------~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 17 TYSESGRCRYGAKCQFA---HGLGELRQA-----------NRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp GGGGTSCCTTTTTCSSC---SSSCCGGGT-----------C---------------------------------
T ss_pred HhhhCCCcCCCCCccCC---CCChhhccc-----------cccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 46678999999999986 444444322 2345789999998888999999999999999875
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=6.1e-11 Score=88.37 Aligned_cols=62 Identities=29% Similarity=0.633 Sum_probs=50.9
Q ss_pred CCccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 49 IRYKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 49 ~kyKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
...|.++|++|+ .|.|.+|+ .|+|+|+.++... .....++.+|.+|. .|.|.+| .|+|.|..
T Consensus 16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~--~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~ 78 (98)
T 2e5s_A 16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMI--DTSDNTVTVCMDYI-KGRCMRE-KCKYFHPP 78 (98)
T ss_dssp CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSC--CTTTCEEEBCHHHH-HTCCCCT-TCCSBCCC
T ss_pred ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhccc--cccCCccccchhhc-cCCCCCC-CcCccCCh
Confidence 345789999999 79999999 7999999987532 11235678999996 7999999 99999994
No 8
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=78.26 Aligned_cols=62 Identities=24% Similarity=0.551 Sum_probs=50.3
Q ss_pred CCCCccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 47 DPIRYKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 47 ~~~kyKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
+..+.+.++|+.|+ .|.|..|| .|+|+|....+.. ...+..+|.+|. .|.|.++ .|+|.|..
T Consensus 3 ~~~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~----~~~~~~vC~dfl-kG~C~r~-~C~y~H~~ 65 (83)
T 3d2n_A 3 DTKWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQV----ENGRVIACFDSL-KGRCSRE-NCKYLHPP 65 (83)
T ss_dssp -CGGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCE----ETTEEECCHHHH-TTCCCCS-SCSSCCCC
T ss_pred CcccccchhcHHHh-cCCCCCCCCCCCCcCCCccccc----cCCceeehhHhh-hccccCC-CcceeCCh
Confidence 45578899999999 69999997 9999999875421 123568999996 7999998 99999994
No 9
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6.2e-10 Score=78.27 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=36.8
Q ss_pred CccccccccccCcccCCCCCCccccccCcccCCCc-ccccccccccccc
Q psy10639 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV-RHYRYRTRLCRNY 97 (189)
Q Consensus 50 kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~-~~p~~kt~lCk~f 97 (189)
..|++||++|+ .|.|+||++|+|||+.+||+... +....++++++..
T Consensus 17 ~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar 64 (69)
T 2d9m_A 17 TGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS 64 (69)
T ss_dssp CSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred CCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence 34679999996 89999999999999999998753 3334567777643
No 10
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.60 E-value=1.5e-08 Score=74.38 Aligned_cols=62 Identities=24% Similarity=0.569 Sum_probs=50.8
Q ss_pred CCCCccccccccccCcccCCCCC-CccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 47 DPIRYKTELCRSLEGYRPCQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 47 ~~~kyKT~lCr~f~~~G~C~~Gd-~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
+..+.+.++|+.|+ .|.|..|+ .|+|+|........ ..+...|..|+ .|.|.++ .|+|.|..
T Consensus 11 ~~~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v~----~~~~~vC~dfl-kG~C~r~-~Cky~H~~ 73 (89)
T 2rpp_A 11 DTKWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQVE----NGRVIACFDSL-KGRCSRE-NCKYLHPP 73 (89)
T ss_dssp SCSSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCCB----TTBEEBCHHHH-HTCCCCT-TCCSBCCC
T ss_pred CCCcchhhhchHHh-cCCCCCCCCCCCCcCCCcccccc----CCceeeehhhh-hCcCCCC-CcceecCH
Confidence 45567889999999 69999998 99999988753211 23578999996 8999998 99999994
No 11
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.1e-07 Score=67.37 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=43.2
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccCCCccccccc
Q psy10639 11 ARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYR 90 (189)
Q Consensus 11 g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~k 90 (189)
|.|..|..|.|+|. .. ..++.+|++|+..|.|. |++|.|+|...+. +
T Consensus 19 G~C~~G~~C~fsH~---~~--------------------~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~---------~ 65 (77)
T 2d9n_A 19 GLCKKGDQCEFLHE---YD--------------------MTKMPECYFYSKFGECS-NKECPFLHIDPES---------K 65 (77)
T ss_dssp TCCSCTTSSSSBCS---CC--------------------TTTSCBCHHHHHTCCCC-CSSCSSBCCCTTS---------S
T ss_pred CcCCCCCCCCCccc---cc--------------------cCcCCCCcccCCCCccC-CCCeeccCCCccc---------c
Confidence 99999999998732 10 01456899999559999 9999999987654 5
Q ss_pred cccccccc
Q psy10639 91 TRLCRNYH 98 (189)
Q Consensus 91 t~lCk~f~ 98 (189)
+.+|+.|.
T Consensus 66 ~~~C~~f~ 73 (77)
T 2d9n_A 66 IKDCPWSG 73 (77)
T ss_dssp CSSSSCCT
T ss_pred CCCCcccc
Confidence 78999986
No 12
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.7e-07 Score=65.84 Aligned_cols=34 Identities=29% Similarity=0.593 Sum_probs=29.5
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCcCCC
Q psy10639 87 YRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPV 123 (189)
Q Consensus 87 p~~kt~lCk~f~~~G~C~~G~~CrFaH~~~~ee~~~~ 123 (189)
|..++++|+.| ..|.|+||++|.|||+ .+||+..
T Consensus 16 P~~k~~LC~~~-~~G~C~~G~~C~FAHG--~~ELr~~ 49 (69)
T 2d9m_A 16 PTGYFSICDRY-MNGTCPEGNSCKFAHG--NAELHEW 49 (69)
T ss_dssp CCSCCSBCHHH-HHSCCSSCSSCSSBSS--HHHHHHH
T ss_pred CCCCcccCccc-CcCCCCCCCccCCcCC--HHHHhhH
Confidence 44577999999 6899999999999999 8888774
No 13
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.11 E-value=8.2e-07 Score=65.77 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=36.2
Q ss_pred CCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCc
Q psy10639 9 HPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVE 78 (189)
Q Consensus 9 ~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~ 78 (189)
..|.|.+|.+|.|. |. +.+|++|...|.|++|++|+|+|...
T Consensus 20 ~~G~C~~G~~C~f~---H~-------------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 20 ITGFCARAENCPYM---HG-------------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp TTTCCSCSTTCSSB---SS-------------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred ccCcCCCCCCCCCC---CC-------------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 47999999999876 31 68899996689999999999999865
No 14
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.82 E-value=5.3e-06 Score=57.62 Aligned_cols=55 Identities=13% Similarity=0.387 Sum_probs=41.4
Q ss_pred CCccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCcccC
Q psy10639 9 HPARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELR 81 (189)
Q Consensus 9 ~~g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~elr 81 (189)
..|.|..|. .|.|+ |.+.+. .+.....++.+|++|+ .|.|.+| .|.|+|...+|+
T Consensus 13 ~~G~C~rg~~~C~f~---H~~~~~-------------~~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 13 QRGNCNRGENDCRFA---HPADST-------------MIDTNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp HTTCCSSCTTTCSSB---CCCTTS-------------CCBTTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred hcCCCCCCCCCCCCc---cCcccc-------------cccccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 359999999 49987 422222 1233457899999999 7999999 899999987763
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.65 E-value=9e-06 Score=56.93 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=36.6
Q ss_pred CCCCccccccccchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639 7 WRHPARFRLDQKCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 7 ~~~~g~c~~g~~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
|+. |.|..|..|.|++. .. ..++.+|++|+..|.|.+ ++|.|.|...+.
T Consensus 22 fl~-G~C~~G~~C~fsH~---~~--------------------~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 22 WLR-GLCKKGDQCEFLHE---YD--------------------MTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp HHT-TCCCCGGGSSSBCS---CC--------------------TTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred Hhc-CCCCCCCCCCCccc---cc--------------------cccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 344 99999999998732 10 015779999995499999 999999986543
No 16
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=4.9e-05 Score=56.24 Aligned_cols=52 Identities=13% Similarity=0.363 Sum_probs=40.2
Q ss_pred ccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639 11 ARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 11 g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
|+|..|. .|.|.|. +.... +.....++.+|++|+ .|.|.+| +|+|.|...++
T Consensus 29 G~C~rgd~~C~FsH~---~~~~~-------------~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 29 GNCARGETDCRFAHP---ADSTM-------------IDTSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp TCCSSHHHHCSSBCC---SSCCS-------------CCTTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred CcCCCCCCCCCCcCC---chhcc-------------ccccCCccccchhhc-cCCCCCC-CcCccCChHHH
Confidence 9999998 7998733 22221 233457899999999 7999999 89999998766
No 17
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.24 E-value=5.7e-05 Score=49.66 Aligned_cols=27 Identities=30% Similarity=0.726 Sum_probs=21.1
Q ss_pred cccccccccccccccCCCCCCCCCCCC
Q psy10639 89 YRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 89 ~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
.++.+|..|.+.|+|++|.+|.+.|++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cccchhhhccccccCCCCCCCCccccC
Confidence 456778888888888888888888874
No 18
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.10 E-value=9.7e-05 Score=48.56 Aligned_cols=29 Identities=24% Similarity=0.647 Sum_probs=27.1
Q ss_pred ccccccccccCcccCCCCCCccccccCcc
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAHSVEE 79 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH~~~e 79 (189)
.++.+|..|...|.|++|.+|.+.|+++-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 68999999999999999999999999873
No 19
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.51 E-value=0.00045 Score=49.62 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=39.1
Q ss_pred CCCCccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639 7 WRHPARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 7 ~~~~g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
|+. |.|..+. .|.|+|. +..+ .-...+..+|.+|+ .|.|..+ .|.|.|....+
T Consensus 15 Flr-G~C~r~d~~C~f~H~---~~~~---------------~~~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 15 FQR-GTCSRPDTECKFAHP---SKSC---------------QVENGRVIACFDSL-KGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp GGG-TCCCSCTTTCSSBCC---CTTC---------------CEETTEEECCHHHH-TTCCCCS-SCSSCCCCHHH
T ss_pred Hhc-CCCCCCCCCCCCcCC---Cccc---------------cccCCceeehhHhh-hccccCC-CcceeCChHHH
Confidence 455 9999995 9988633 2111 11135789999999 8999998 89999998765
No 20
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.02 E-value=0.0021 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=21.3
Q ss_pred cccccccccCcccCC----CCCCccccccCcc
Q psy10639 52 KTELCRSLEGYRPCQ----YGERCRFAHSVEE 79 (189)
Q Consensus 52 KT~lCr~f~~~G~C~----~Gd~C~FaH~~~e 79 (189)
.=.|||+|. .|.|. .+..|+|.|++..
T Consensus 88 ~LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 88 SLHLCKLNL-LGRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp SBCCCHHHH-TTCCGGGTCCSSCCSSCSCTTC
T ss_pred ceeechhhh-cCcCCcccCCCCCcccccccCc
Confidence 446899999 79993 3577999998864
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=95.59 E-value=0.0064 Score=51.25 Aligned_cols=51 Identities=25% Similarity=0.681 Sum_probs=42.1
Q ss_pred cCCCCccccccccccC---cccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCCC
Q psy10639 46 LDPIRYKTELCRSLEG---YRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115 (189)
Q Consensus 46 ~~~~kyKT~lCr~f~~---~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~~ 115 (189)
++....=.++|.+|.. .|.|.+++.|.-.| +|.+|. .|.|.| ..|.-.|+.
T Consensus 144 QnDp~lLPeiC~~YkG~g~~g~C~~~~~C~kLH-----------------IC~~Fl-~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 144 QSDPFFLPEICKSYKGEGRKQTCGQPQPCERLH-----------------ICEHFT-RGNCSY-LNCLRSHNL 197 (229)
T ss_dssp TTCGGGSCCBCTTCCCSSSCCSCSSSSCCCSBC-----------------SCHHHH-TTCCCC-SSCSSCCCT
T ss_pred cCCCccCchHHHHhCCCCCCCcCCCCCCCccee-----------------ccchhh-cCCcCC-CCccCccCc
Confidence 3455566899999932 26999999999988 698885 999999 899999995
No 22
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.19 E-value=0.0056 Score=44.48 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=36.9
Q ss_pred ccccccc-cchhhhhcCCCCCCCCCCCCCccccccccCCCCccccccccccCcccCCCCCCccccccCccc
Q psy10639 11 ARFRLDQ-KCQQEFHDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEEL 80 (189)
Q Consensus 11 g~c~~g~-~C~~~f~s~g~~~~~~p~~P~~~s~r~~~~~~kyKT~lCr~f~~~G~C~~Gd~C~FaH~~~el 80 (189)
|.|+.+. .|.|+|. +... .+. .-+..+|..|+ .|.|..+ .|+|.|....+
T Consensus 26 G~C~r~d~~CrfsH~---~~~~-------------~v~--~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 26 GTCSRSDEECKFAHP---PKSC-------------QVE--NGRVIACFDSL-KGRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp TCCCCCTTTSSSBCC---CSSS-------------CCB--TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred CCCCCCCCCCCCcCC---Cccc-------------ccc--CCceeeehhhh-hCcCCCC-CcceecCHHHH
Confidence 8899997 9988633 1111 011 33689999999 8999998 79999988765
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.27 E-value=0.028 Score=40.13 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=15.5
Q ss_pred cccccccccCcccCCCCCCccccccC
Q psy10639 52 KTELCRSLEGYRPCQYGERCRFAHSV 77 (189)
Q Consensus 52 KT~lCr~f~~~G~C~~Gd~C~FaH~~ 77 (189)
-.++|++|. .|.. +.|.|.|..
T Consensus 8 ~~e~CKf~~---~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 8 SLEQCKFGT---HCTN-KRCKYRHAR 29 (80)
Confidence 356787776 4777 778888854
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.59 E-value=0.023 Score=47.80 Aligned_cols=28 Identities=32% Similarity=0.955 Sum_probs=23.6
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCC
Q psy10639 91 TRLCRNYHHNGVCNYGTRCSFIHRVPGEE 119 (189)
Q Consensus 91 t~lCk~f~~~G~C~~G~~CrFaH~~~~ee 119 (189)
..+|.+|. .|.|.+|..|.|.|..|.++
T Consensus 70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt~~ 97 (240)
T 3u1l_A 70 LFFCLFFA-KGMCCLGPKCEYLHHIPDEE 97 (240)
T ss_dssp CSBCHHHH-TTCCSCGGGCSSBBSCCCHH
T ss_pred CeEcCccc-cCCCCCCCCCCccCCCCCcc
Confidence 35899886 69999999999999976643
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.57 E-value=0.037 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.586 Sum_probs=22.2
Q ss_pred cccccccccCcccCCCCCCccccccC
Q psy10639 52 KTELCRSLEGYRPCQYGERCRFAHSV 77 (189)
Q Consensus 52 KT~lCr~f~~~G~C~~Gd~C~FaH~~ 77 (189)
...+|.+|. .|.|++|+.|.|.|..
T Consensus 69 ~~~~C~ffa-kG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 69 QLFFCLFFA-KGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CCSBCHHHH-TTCCSCGGGCSSBBSC
T ss_pred CCeEcCccc-cCCCCCCCCCCccCCC
Confidence 356999999 6999999999999965
No 26
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=83.09 E-value=0.26 Score=35.05 Aligned_cols=41 Identities=29% Similarity=0.596 Sum_probs=31.3
Q ss_pred ccccccccCcccCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCCCC
Q psy10639 53 TELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 53 T~lCr~f~~~G~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
..+|+++. .|.. ..|.|+|-. .+.|+++. .|.+ ..|.|.|.
T Consensus 31 ~~~Cr~g~---~C~~-~~C~f~HP~-------------~~~Crf~~---~C~n-~~C~F~Hp 71 (80)
T 2lhn_A 31 HIMCREGA---NCTR-IDCLFGHPI-------------NEDCRFGV---NCKN-IYCLFRHP 71 (80)
Confidence 45788775 5887 669999953 24698653 8988 89999997
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=68.34 E-value=1.2 Score=37.12 Aligned_cols=22 Identities=36% Similarity=0.966 Sum_probs=0.0
Q ss_pred ccccccccccccccCCCCCCCCCCC
Q psy10639 90 RTRLCRNYHHNGVCNYGTRCSFIHR 114 (189)
Q Consensus 90 kt~lCk~f~~~G~C~~G~~CrFaH~ 114 (189)
+..+|++ ...|.||.+|.|.|.
T Consensus 191 ~~~~~~~---~~~~~~~~~~~~~~~ 212 (223)
T 3v33_A 191 RKQPCPY---GRKCTYGIKCRFFHP 212 (223)
T ss_dssp -------------------------
T ss_pred CCCCCCC---CcccccCCcceecCC
Confidence 5678994 468999999999999
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=51.43 E-value=3.1 Score=34.67 Aligned_cols=25 Identities=36% Similarity=0.801 Sum_probs=0.0
Q ss_pred ccccccccccCcccCCCCCCccccccCc
Q psy10639 51 YKTELCRSLEGYRPCQYGERCRFAHSVE 78 (189)
Q Consensus 51 yKT~lCr~f~~~G~C~~Gd~C~FaH~~~ 78 (189)
.+..+|.|- ..|.||.+|+|.|...
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 190 HRKQPCPYG---RKCTYGIKCRFFHPER 214 (223)
T ss_dssp ----------------------------
T ss_pred cCCCCCCCC---cccccCCcceecCCcc
Confidence 367889963 4699999999999764
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=47.23 E-value=8.5 Score=27.79 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCC
Q psy10639 100 NGVCNYGTRCSFIHRV 115 (189)
Q Consensus 100 ~G~C~~G~~CrFaH~~ 115 (189)
.-.|+||..|--....
T Consensus 56 ~p~C~YG~~CYRkNp~ 71 (89)
T 2kqb_A 56 RPECPYGPSCYRKNPQ 71 (89)
T ss_dssp ----------------
T ss_pred CCCCCCchhhhcCCHH
Confidence 4569999999755443
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=34.03 E-value=11 Score=27.32 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.4
Q ss_pred ccccCCCCCCCCC
Q psy10639 100 NGVCNYGTRCSFI 112 (189)
Q Consensus 100 ~G~C~~G~~CrFa 112 (189)
.-.|+||..|--.
T Consensus 61 ~p~C~YG~~CYRk 73 (91)
T 2kuo_A 61 RPECPYGPSCYRK 73 (91)
T ss_dssp SCBCTTGGGCCCC
T ss_pred CCCCCCchhhhcC
Confidence 4468899999643
No 31
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=33.30 E-value=27 Score=21.63 Aligned_cols=31 Identities=32% Similarity=0.769 Sum_probs=22.3
Q ss_pred cCCCCCCccccccCcccCCCccccccccccccccccccccCCCCCCCCC
Q psy10639 64 PCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFI 112 (189)
Q Consensus 64 ~C~~Gd~C~FaH~~~elr~~~~~p~~kt~lCk~f~~~G~C~~G~~CrFa 112 (189)
.|.-|+.|-..++.. +.++| .|+.|..|.|-
T Consensus 6 ~Cd~GeqCAvRkG~R-----------igklC-------~C~rg~~Cn~f 36 (41)
T 1hy9_A 6 MCDAGEQCAVRKGAR-----------IGKLC-------DCPRGTSCNSF 36 (41)
T ss_dssp BCCSSSCSEEECSSS-----------EEECC-------BCCTTCCBCTT
T ss_pred cCCccchhhhhcccc-----------cchhc-------CCCCCCcchhh
Confidence 688889998887764 34555 57888888763
Done!